Citrus Sinensis ID: 012666
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FE59 | 510 | Sucrose transport protein | yes | no | 0.971 | 0.872 | 0.737 | 0.0 | |
| A2ZN77 | 501 | Sucrose transport protein | N/A | no | 0.914 | 0.836 | 0.664 | 1e-164 | |
| Q0ILJ3 | 501 | Sucrose transport protein | yes | no | 0.917 | 0.838 | 0.663 | 1e-164 | |
| Q39231 | 512 | Sucrose transport protein | no | no | 0.958 | 0.857 | 0.521 | 1e-130 | |
| Q67YF8 | 491 | Sucrose transport protein | no | no | 0.949 | 0.885 | 0.527 | 1e-127 | |
| Q9FG00 | 491 | Sucrose transport protein | no | no | 0.954 | 0.890 | 0.513 | 1e-126 | |
| Q39232 | 513 | Sucrose transport protein | no | no | 0.969 | 0.865 | 0.518 | 1e-125 | |
| Q9ZVK6 | 492 | Sucrose transport protein | no | no | 0.936 | 0.871 | 0.534 | 1e-124 | |
| Q6A329 | 492 | Putative sucrose transpor | no | no | 0.956 | 0.890 | 0.523 | 1e-123 | |
| Q03411 | 525 | Sucrose transport protein | N/A | no | 0.943 | 0.822 | 0.546 | 1e-123 |
| >sp|Q9FE59|SUC4_ARATH Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/461 (73%), Positives = 386/461 (83%), Gaps = 16/461 (3%)
Query: 3 QDERQR--------SKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLL 54
QD R R ++ S+SR V PP R+KV R LL+VASVA GIQFGWALQLSLL
Sbjct: 6 QDRRHRVTRNRPPIARPSTSSSRPVVSPP-RSKVSKRVLLRVASVACGIQFGWALQLSLL 64
Query: 55 TPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114
TPYVQELGIPHAWAS+IWLCGP+SGLFVQPLVGH SDRCTS++GRRRPFIV GA++I+++
Sbjct: 65 TPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSSDRCTSKYGRRRPFIVAGAVAISIS 124
Query: 115 VLLIGLSADIGWLLGDR-GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHR 173
V++IG +ADIGW GDR G +PRAI FV GFWILDVANNMTQGPCRALLADLT D+R
Sbjct: 125 VMVIGHAADIGWAFGDREGKIKPRAIVAFVLGFWILDVANNMTQGPCRALLADLTENDNR 184
Query: 174 RTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIA 233
RTRVAN YFSLFMAVGN+LGYATGS++GW+KI FT T ACNV+CANLKSAF++DV+FIA
Sbjct: 185 RTRVANGYFSLFMAVGNVLGYATGSYNGWYKIFTFTKTVACNVECANLKSAFYIDVVFIA 244
Query: 234 ITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIV 293
ITT +S SAAHEVPL S + E H Q+S EAFL E+FGTFRYF G +WIIL+V
Sbjct: 245 ITTILSVSAAHEVPLAS------LASEAHGQTSGTDEAFLSEIFGTFRYFPGNVWIILLV 298
Query: 294 TALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353
TALTW+GWFPF+LFDTDWMGREIYGGEPN G +Y+ GV MGALGLMLNSV LGITSVLME
Sbjct: 299 TALTWIGWFPFILFDTDWMGREIYGGEPNIGTSYSAGVSMGALGLMLNSVFLGITSVLME 358
Query: 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILG 413
KLCRKWGAGF+WGISNILMA+CFL M+I +VA H+ Y GH+ PP IV AA++IFTILG
Sbjct: 359 KLCRKWGAGFVWGISNILMAICFLGMIITSFVASHLGYIGHEQPPASIVFAAVLIFTILG 418
Query: 414 GPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
PLAITYSVPYAL+SIR ESLGLGQGLSLGVLNLAIVIPQV
Sbjct: 419 IPLAITYSVPYALISIRIESLGLGQGLSLGVLNLAIVIPQV 459
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Arabidopsis thaliana (taxid: 3702) |
| >sp|A2ZN77|SUT2_ORYSI Sucrose transport protein SUT2 OS=Oryza sativa subsp. indica GN=SUT2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 580 bits (1494), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/438 (66%), Positives = 353/438 (80%), Gaps = 19/438 (4%)
Query: 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLV 86
KVPLRKLL+ ASVA G+QFGWALQLSLLTPYVQELGIPHA+AS++WLCGP+SGL VQPLV
Sbjct: 21 KVPLRKLLRAASVACGVQFGWALQLSLLTPYVQELGIPHAFASLVWLCGPLSGLLVQPLV 80
Query: 87 GHFSDR---CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIA 140
GH SDR S GRRRPFI GA SIA AVL +G SAD+G + GD G R AI
Sbjct: 81 GHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRIFGDSITPGSTRLGAII 140
Query: 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200
V++ GFW+LDV NN TQGPCRA LADLT D RRTR+ANAYFSLFMA+GNILGYATG++S
Sbjct: 141 VYLVGFWLLDVGNNATQGPCRAFLADLTENDPRRTRIANAYFSLFMALGNILGYATGAYS 200
Query: 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE-VPLGSHDQSAPFSE 259
GW+KI PFT+T +C++ CANLKSAF LD+I + +TTCI+ ++ E LGS + P +E
Sbjct: 201 GWYKIFPFTVTPSCSISCANLKSAFLLDIIILVVTTCITVASVQEPQSLGSDEADHPSTE 260
Query: 260 EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG 319
+ EAFLWELFG+FRYF+ +W++LIVTALTW+GWFPF+LFDTDWMGREIY G
Sbjct: 261 Q---------EAFLWELFGSFRYFTLPVWMVLIVTALTWIGWFPFILFDTDWMGREIYRG 311
Query: 320 EPNE---GQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCF 376
P++ Q+Y GVRMG+ GLMLNSV+LG TS+++EKLCRKWGAG +WG+SNILMALCF
Sbjct: 312 SPDDPSITQSYHDGVRMGSFGLMLNSVLLGFTSIVLEKLCRKWGAGLVWGVSNILMALCF 371
Query: 377 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436
+AML++ YVA +MDY +PP GIVIA+L++FTILG PLAITYS+PYA+ + R E+LGL
Sbjct: 372 VAMLVITYVAKNMDYPPSGVPPTGIVIASLVVFTILGAPLAITYSIPYAMAASRVENLGL 431
Query: 437 GQGLSLGVLNLAIVIPQV 454
GQGL++G+LNLAIVIPQV
Sbjct: 432 GQGLAMGILNLAIVIPQV 449
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q0ILJ3|SUT2_ORYSJ Sucrose transport protein SUT2 OS=Oryza sativa subsp. japonica GN=SUT2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 578 bits (1491), Expect = e-164, Method: Compositional matrix adjust.
Identities = 290/437 (66%), Positives = 351/437 (80%), Gaps = 17/437 (3%)
Query: 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLV 86
KVPLRKLL+ ASVA G+QFGWALQLSLLTPYVQELGIPHA+AS++WLCGP+SGL VQPLV
Sbjct: 21 KVPLRKLLRAASVACGVQFGWALQLSLLTPYVQELGIPHAFASLVWLCGPLSGLLVQPLV 80
Query: 87 GHFSDR---CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIA 140
GH SDR S GRRRPFI GA SIA AVL +G SAD+G + GD G R AI
Sbjct: 81 GHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRIFGDSITPGSTRLGAII 140
Query: 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200
V++ GFW+LDV NN TQGPCRA LADLT D RRTR+ANAYFSLFMA+GNILGYATG++S
Sbjct: 141 VYLVGFWLLDVGNNATQGPCRAFLADLTENDPRRTRIANAYFSLFMALGNILGYATGAYS 200
Query: 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 260
GW+KI PFT+T +C++ CANLKSAF LD+I + +TTCI+ ++ E QS F +
Sbjct: 201 GWYKIFPFTVTPSCSISCANLKSAFLLDIIILVVTTCITVASVQE------PQS--FGSD 252
Query: 261 GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGE 320
+ S EAFLWELFG+FRYF+ +W++LIVTALTW+GWFPF+LFDTDWMGREIY G
Sbjct: 253 EADHPSTEQEAFLWELFGSFRYFTLPVWMVLIVTALTWIGWFPFILFDTDWMGREIYRGS 312
Query: 321 PNE---GQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFL 377
P++ Q+Y GVRMG+ GLMLNSV+LG TS+++EKLCRKWGAG +WG+SNILMALCF+
Sbjct: 313 PDDPSITQSYHDGVRMGSFGLMLNSVLLGFTSIVLEKLCRKWGAGLVWGVSNILMALCFV 372
Query: 378 AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437
AML++ YVA +MDY +PP GIVIA+L++FTILG PLAITYS+PYA+ + R E+LGLG
Sbjct: 373 AMLVITYVAKNMDYPPSGVPPTGIVIASLVVFTILGAPLAITYSIPYAMAASRVENLGLG 432
Query: 438 QGLSLGVLNLAIVIPQV 454
QGL++G+LNLAIVIPQV
Sbjct: 433 QGLAMGILNLAIVIPQV 449
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q39231|SUC2_ARATH Sucrose transport protein SUC2 OS=Arabidopsis thaliana GN=SUC2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 310/466 (66%), Gaps = 27/466 (5%)
Query: 2 PQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQEL 61
P ++ S T P R LRK++ V+S+A G+QFGWALQLSLLTPYVQ L
Sbjct: 5 PMEKAANGASALETQTGELDQPER----LRKIISVSSIAAGVQFGWALQLSLLTPYVQLL 60
Query: 62 GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121
GIPH WAS+IWLCGP+SG+ VQP+VG+ SDRCTSRFGRRRPFIV GA + VAV LIG +
Sbjct: 61 GIPHKWASLIWLCGPISGMLVQPIVGYHSDRCTSRFGRRRPFIVAGAGLVTVAVFLIGYA 120
Query: 122 ADIGWLLGDRGDFRP--RAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVAN 179
ADIG +GD+ D P RAIA+F GFWILDVANN QGPCRA LADL+ + ++TR AN
Sbjct: 121 ADIGHSMGDQLDKPPKTRAIAIFALGFWILDVANNTLQGPCRAFLADLSAGNAKKTRTAN 180
Query: 180 AYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239
A+FS FMAVGN+LGYA GS+ +K++PFT+T +C++ CANLK+ FFL + + I T +S
Sbjct: 181 AFFSFFMAVGNVLGYAAGSYRNLYKVVPFTMTESCDLYCANLKTCFFLSITLLLIVTFVS 240
Query: 240 ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWL 299
E P++ E + F E+FG F+ +W++LIVTAL W+
Sbjct: 241 LCYVKE---------KPWTPEPTADGKASNVPFFGEIFGAFKELKRPMWMLLIVTALNWI 291
Query: 300 GWFPFLLFDTDWMGREIYGGEPN------EGQNYATGVRMGALGLMLNSVVLGITSVLME 353
WFPFLLFDTDWMGRE+YGG + + Y GVR GALGLMLN++VLG S+ +E
Sbjct: 292 AWFPFLLFDTDWMGREVYGGNSDATATAASKKLYNDGVRAGALGLMLNAIVLGFMSLGVE 351
Query: 354 KLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGH----DLPPNGIVIAALII 408
+ RK GA +WGI N ++A+C LAM ++ R H PP + AL +
Sbjct: 352 WIGRKLGGAKRLWGIVNFILAIC-LAMTVVVTKQAENHRRDHGGAKTGPPGNVTAGALTL 410
Query: 409 FTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
F ILG P AIT+S+P+AL SI + + G GQGLSLGVLNLAIV+PQ+
Sbjct: 411 FAILGIPQAITFSIPFALASIFSTNSGAGQGLSLGVLNLAIVVPQM 456
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport other glucosides such as maltose, arbutin (hydroquinone-beta-D-glucoside), salicin (2-(hydroxymethyl)phenyl-beta-D-glucoside), alpha-phenylglucoside, beta-phenylglucoside, alpha-paranitrophenylglucoside, beta-paranitrophenylglucoside, and paranitrophenyl-beta-thioglucoside. May also transport biotin. Required for apoplastic phloem sucrose loading in source tissues (e.g leaves) in order to transport it to sink tissues (e.g. roots, flowers). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q67YF8|SUC7_ARATH Sucrose transport protein SUC7 OS=Arabidopsis thaliana GN=SUC7 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/461 (52%), Positives = 315/461 (68%), Gaps = 26/461 (5%)
Query: 4 DERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGI 63
++ + + R S+S P+ PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+
Sbjct: 7 NKDETTVDRQSSSSVDLDGPS----PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGV 62
Query: 64 PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123
PH W S IWLCGPVSGL VQP VG+FSDRCTSRFGRRRPFI GA+ +AV+V+LIG +AD
Sbjct: 63 PHKWPSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVSVVLIGYAAD 122
Query: 124 IGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY 181
G +GD+ D + RA+ +F GFWILDVANN QGPCRA L DL D ++TR ANA+
Sbjct: 123 FGHSMGDKIDKPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAQKTRTANAF 182
Query: 182 FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241
FS FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 183 FSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIALW 242
Query: 242 AAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGW 301
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+ W
Sbjct: 243 YVED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIAW 291
Query: 302 FPFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCR 357
FPFLL+DTDWMGRE+YGG+ Y G+ +GALGLMLNS+VLG+ S+ +E + R
Sbjct: 292 FPFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGALGLMLNSIVLGVMSLGIEGISR 351
Query: 358 KW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTILG 413
K GA +WG NI++A+C LAM +L R LP +GI AL +F +LG
Sbjct: 352 KMGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLG 410
Query: 414 GPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
PLAIT+S+P+AL SI + S G GQ LSLGVLN+AIVIPQ+
Sbjct: 411 IPLAITFSIPFALASIISSSSGAGQRLSLGVLNMAIVIPQM 451
|
May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG00|SUC9_ARATH Sucrose transport protein SUC9 OS=Arabidopsis thaliana GN=SUC9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 236/460 (51%), Positives = 313/460 (68%), Gaps = 23/460 (5%)
Query: 3 QDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELG 62
+++ ++S+S V P+ PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG
Sbjct: 7 KEDAAPVDRQSSSSVVVPDEPS----PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLG 62
Query: 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122
+PH W+S IWLCGP+SGL VQP VG+FSDRC SRFGRRRPFI GA+ +A+AV+LIG +A
Sbjct: 63 VPHKWSSFIWLCGPISGLLVQPTVGYFSDRCKSRFGRRRPFIATGALLVALAVILIGFAA 122
Query: 123 DIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
D G +GD+ D + RA+ FV GFWILDVANN QGPCRA L DL D ++TR ANA
Sbjct: 123 DFGHTMGDKLDEAVKIRAVGFFVVGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANA 182
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
FS FMAVGN+LGYA GS++ KI PFT+T AC++ CANLKS F + + + + T I+
Sbjct: 183 IFSFFMAVGNVLGYAAGSYTNLHKIFPFTVTKACDIYCANLKSCFIISITLLIVLTIIAL 242
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+ Q +P ++ +E++ F E+FG F+ +W++L VTAL W+
Sbjct: 243 WYVED------KQWSPNADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLAVTALNWIA 291
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLC 356
WFPFLL+DTDWMGRE+YGG+ Y G+++G+LGLMLNS+VLG+ S+++ +
Sbjct: 292 WFPFLLYDTDWMGREVYGGDSAGDDKMKKLYNHGIQVGSLGLMLNSIVLGVMSLVIGVIS 351
Query: 357 RKWGAGFIWGISNILMALCF-LAMLILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGG 414
+K GA +WG NI++A+C + +L+ H G LP N I AL +F ILG
Sbjct: 352 KKIGAKRLWGAVNIILAVCLAMTVLVTKKAEEHRKIAGRMALPTNAIRDGALSLFAILGI 411
Query: 415 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
PLAIT+S+P+AL SI + S G GQGLSLGVLN+AIVIPQ+
Sbjct: 412 PLAITFSIPFALASIISSSSGAGQGLSLGVLNMAIVIPQM 451
|
High-affinity sucrose transporter. Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport a wide range of glucosides, such as helicin, salicin, arbutin, maltose, fraxin, esculin, uranose, alpha-methylglucoside, alpha-phenylglucoside and beta-phenylglucoside. Plays a role in flowering time transition delay. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39232|SUC1_ARATH Sucrose transport protein SUC1 OS=Arabidopsis thaliana GN=SUC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/459 (51%), Positives = 306/459 (66%), Gaps = 15/459 (3%)
Query: 5 ERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
E ++ A+ + PLRK++ VAS+A G+QFGWALQLSLLTPYVQ LGIP
Sbjct: 5 ETEKPTKDAAALETQSPEDFDQPSPLRKIISVASIAAGVQFGWALQLSLLTPYVQLLGIP 64
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H W+S+IWLCGPVSG+ VQP+VG SDRC S+FGRRRPFI GA +AVAV LIG +AD
Sbjct: 65 HKWSSLIWLCGPVSGMIVQPIVGFHSDRCRSKFGRRRPFIATGAALVAVAVFLIGYAADF 124
Query: 125 GWLLGDR--GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182
G+ +GD+ + RAI +F GFWILDVANN QGPCRA LADL D +RTRVANA+F
Sbjct: 125 GYKMGDKLEEKVKVRAIGIFALGFWILDVANNTLQGPCRAFLADLAAGDAKRTRVANAFF 184
Query: 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242
S FMAVGN+LGYA GS++ K+ PFT+T AC++ CANLK+ FFL + + I T S
Sbjct: 185 SFFMAVGNVLGYAAGSYTNLHKMFPFTMTKACDIYCANLKTCFFLSITLLLIVTVTSLWY 244
Query: 243 AHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF 302
++ P + + E++S V E+FG F+ +W++LIVTAL W+ WF
Sbjct: 245 VND----KQWSPPPRNADDDEKTSSV--PLFGEIFGAFKVMKRPMWMLLIVTALNWIAWF 298
Query: 303 PFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358
PFLLFDTDWMGRE++GG+ + + Y+ GV+ GA+GLM NS+VLG S+ +E + RK
Sbjct: 299 PFLLFDTDWMGREVFGGDSDGNERSKKLYSLGVQSGAMGLMFNSIVLGFMSLGVEWIGRK 358
Query: 359 W-GAGFIWGISN-ILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIA-ALIIFTILGGP 415
GA +WGI N IL A + +L+ + H G P+ V A AL +F +LG P
Sbjct: 359 LGGAKRLWGIVNFILAAGLAMTVLVTKFAEDHRKTAGDLAGPSASVKAGALSLFAVLGIP 418
Query: 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
LAIT+S P+AL SI + G GQGLSLGVLNLAIVIPQ+
Sbjct: 419 LAITFSTPFALASIFSSCSGAGQGLSLGVLNLAIVIPQM 457
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). This transport is both voltage- and energy-dependent. Can also transport other glucosides such as maltose, alpha-phenylglucoside and beta-phenylglucoside. May also transport biotin. Required for normal pollen germination and anthocyanin accumulation induced by sucrose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVK6|SUC8_ARATH Sucrose transport protein SUC8 OS=Arabidopsis thaliana GN=SUC8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 246/460 (53%), Positives = 313/460 (68%), Gaps = 31/460 (6%)
Query: 5 ERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
+RQ S S A PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+P
Sbjct: 14 DRQSSSSLADLD---------GPSPLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVP 64
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H W+S IWLCGPVSGL VQP VG+FSDRCTSRFGRRRPFI GA+ +AVAV+LIG +AD
Sbjct: 65 HKWSSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVAVVLIGYAADF 124
Query: 125 GWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182
G +GD+ D + RA+ +F GFWILDVANN QGPCRA L DL D ++TR ANA+F
Sbjct: 125 GHSMGDKIDKPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFF 184
Query: 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242
S FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 185 SFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWY 244
Query: 243 AHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF 302
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+ WF
Sbjct: 245 VED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWF 293
Query: 303 PFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358
PFLL+DTDWMGRE+YGG+ Y G+ +GALGLMLNS+VLGI S+ +E + +K
Sbjct: 294 PFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGALGLMLNSIVLGIVSLGIEGISKK 353
Query: 359 -WGAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTILGG 414
GA +WG NI++A+C LAM +L R LP +GI AL +F +LG
Sbjct: 354 IGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGI 412
Query: 415 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
PLAIT+S+P+AL SI + S G GQGLSLGVLN+AIVIPQ+
Sbjct: 413 PLAITFSIPFALASIISSSSGAGQGLSLGVLNMAIVIPQM 452
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6A329|SUC6_ARATH Putative sucrose transport protein SUC6 OS=Arabidopsis thaliana GN=SUC6 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/462 (52%), Positives = 313/462 (67%), Gaps = 24/462 (5%)
Query: 5 ERQRSKSRASTSRAVARPPA--RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELG 62
+ Q +K A+ +R + A P+RK++ VAS+A GIQFGWALQLSLLTPYVQ LG
Sbjct: 3 DLQANKDAAAVNRQSSSSSADLNGPSPMRKMISVASIAAGIQFGWALQLSLLTPYVQLLG 62
Query: 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122
+PH W+S IWLCGPVSGL VQP VG+FSDRC SRFGRRRPFI GA+ +AVAV+LIG +A
Sbjct: 63 VPHKWSSFIWLCGPVSGLLVQPSVGYFSDRCKSRFGRRRPFIAMGALLVAVAVVLIGYAA 122
Query: 123 DIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
D G +GD+ D + RA+ +F GFWILDVANN QGPCRA L DL D ++TR ANA
Sbjct: 123 DFGHSMGDKVDEPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANA 182
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
+FS FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 183 FFSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIAL 242
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+
Sbjct: 243 WYVED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIA 291
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLC 356
WFPFLL+DTDWMGRE+YGG+ Y G+ +G LGLMLNS+VLG S+ +E +
Sbjct: 292 WFPFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGGLGLMLNSIVLGFMSLGIEGIS 351
Query: 357 RKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTIL 412
RK GA +WG NI++A+C LAM +L R LP +GI AL +F +L
Sbjct: 352 RKMGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALL 410
Query: 413 GGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
G PLAIT+S+P+AL SI + S G GQGLSLGVLN+ IVIPQ+
Sbjct: 411 GIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMTIVIPQM 452
|
May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q03411|SUT_SPIOL Sucrose transport protein OS=Spinacia oleracea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/443 (54%), Positives = 301/443 (67%), Gaps = 11/443 (2%)
Query: 23 PARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFV 82
P A+ L+KL VASVA G+QFGWALQLSLLTPYVQ LGIPH WA+ IWLCGP+SG+ V
Sbjct: 28 PPEAEATLKKLGLVASVAAGVQFGWALQLSLLTPYVQLLGIPHTWAAYIWLCGPISGMIV 87
Query: 83 QPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD-RGDF-RPRAIA 140
QPLVG++SDRCTSRFGRRRPFI GA +AVAV LIG +ADIG GD G+ +PRAIA
Sbjct: 88 QPLVGYYSDRCTSRFGRRRPFIAAGAALVAVAVGLIGFAADIGAASGDPTGNVAKPRAIA 147
Query: 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200
VFV GFWILDVANN QGPCRALLAD+ +TR ANA+FS FMA+GNI GYA GS+S
Sbjct: 148 VFVVGFWILDVANNTLQGPCRALLADMAAGSQTKTRYANAFFSFFMALGNIGGYAAGSYS 207
Query: 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 260
+ + PFT T+AC+V CANLKS FF+ + + + T ++ S E + + +
Sbjct: 208 RLYTVFPFTKTAACDVYCANLKSCFFISITLLIVLTILALSVVKERQITIDEIQEEEDLK 267
Query: 261 GHEQSSDVHE-AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG 319
SS F +L G + + I+L+VTAL W+ WFPFLLFDTDWMG+E+YGG
Sbjct: 268 NRNNSSGCARLPFFGQLIGALKDLPKPMLILLLVTALNWIAWFPFLLFDTDWMGKEVYGG 327
Query: 320 EPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGFIWGISNILMALCFLA 378
EG+ Y GV GALGLM+NSVVLG+ S+ +E L R GA +WGI NI++A+C
Sbjct: 328 TVGEGKLYDQGVHAGALGLMINSVVLGVMSLSIEGLARMVGGAKRLWGIVNIILAVCLAM 387
Query: 379 MLILYYVAIHMDYRGHDLPP-------NGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
+++ A H H + G+ AL IF +LG PLAIT+S+P+AL SI +
Sbjct: 388 TVLVTKSAEHFRDSHHIMGSAVPPPPPAGVKGGALAIFAVLGIPLAITFSIPFALASIFS 447
Query: 432 ESLGLGQGLSLGVLNLAIVIPQV 454
S G GQGLSLGVLNLAIV+PQ+
Sbjct: 448 ASSGSGQGLSLGVLNLAIVVPQM 470
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. Spinacia oleracea (taxid: 3562) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| 49609488 | 498 | putative sucrose-H+ symporter [Datisca g | 0.967 | 0.889 | 0.805 | 0.0 | |
| 118132677 | 498 | sucrose transporter 4 [Hevea brasiliensi | 0.967 | 0.889 | 0.792 | 0.0 | |
| 224063331 | 510 | sucrose proton symporter [Populus tricho | 0.967 | 0.868 | 0.766 | 0.0 | |
| 38327323 | 499 | sucrose transporter [Malus x domestica] | 0.975 | 0.895 | 0.771 | 0.0 | |
| 74476785 | 496 | sucrose transporter type 4 [Manihot escu | 0.962 | 0.889 | 0.774 | 0.0 | |
| 225458976 | 501 | PREDICTED: sucrose transport protein SUC | 0.978 | 0.894 | 0.781 | 0.0 | |
| 5882292 | 501 | sucrose transporter [Vitis vinifera] | 0.978 | 0.894 | 0.779 | 0.0 | |
| 321531554 | 510 | sucrose transporter 4 [Populus tremula x | 0.967 | 0.868 | 0.757 | 0.0 | |
| 6434829 | 501 | putative sucrose transporter [Vitis vini | 0.978 | 0.894 | 0.777 | 0.0 | |
| 408384444 | 606 | sucrose transporter 1 [Fragaria x ananas | 0.971 | 0.734 | 0.751 | 0.0 |
| >gi|49609488|emb|CAG70682.1| putative sucrose-H+ symporter [Datisca glomerata] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/443 (80%), Positives = 392/443 (88%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
A RA ARPP +A+V LRKLL+V+SVA GIQFGWALQLSLLTPYVQELGIPHAWAS+I
Sbjct: 5 EADRHRARARPPVQARVSLRKLLRVSSVACGIQFGWALQLSLLTPYVQELGIPHAWASVI 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGLFVQPLVGH SDRCTSRFGRRRPFIV GA+SI VAVL+IG SADIG L+GDR
Sbjct: 65 WLCGPLSGLFVQPLVGHMSDRCTSRFGRRRPFIVVGALSITVAVLIIGYSADIGSLIGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191
G +P AIA FV GFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN+
Sbjct: 125 GTVKPGAIATFVVGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNV 184
Query: 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251
LGYATGS+SGWFKI P TLTSACNV+CANLKSAF LD++FIAITT +S SAA E PL
Sbjct: 185 LGYATGSYSGWFKIFPLTLTSACNVNCANLKSAFLLDIVFIAITTYLSISAAQESPLDPT 244
Query: 252 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 311
D+SA +EEG SS EAFLWELFG FRYFS +IW+I VTALTW+GWFPFLLFDTDW
Sbjct: 245 DRSANITEEGPGPSSHTEEAFLWELFGAFRYFSASIWVIFFVTALTWIGWFPFLLFDTDW 304
Query: 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 371
MGREIYGG+PNEGQNY+TGVRMGALGLMLNSVVLGITSVLMEKLCR WGAGF+WG+SNIL
Sbjct: 305 MGREIYGGKPNEGQNYSTGVRMGALGLMLNSVVLGITSVLMEKLCRYWGAGFVWGVSNIL 364
Query: 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
M+LCFLAML++ +VA +DY GH LPP+ IV+AAL+IF ILG PLAITYSVPYAL+S R
Sbjct: 365 MSLCFLAMLVVTFVAKRIDYIGHKLPPDVIVVAALVIFAILGIPLAITYSVPYALISTRI 424
Query: 432 ESLGLGQGLSLGVLNLAIVIPQV 454
ESLGLGQGLS+GVLNLAIVIPQV
Sbjct: 425 ESLGLGQGLSMGVLNLAIVIPQV 447
|
Source: Datisca glomerata Species: Datisca glomerata Genus: Datisca Family: Datiscaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118132677|gb|ABK60191.1| sucrose transporter 4 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/443 (79%), Positives = 381/443 (86%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
+A + RA ARPP +VPLR+LL+V SVAGGIQFGWALQLSLLTPYVQELGIPH WASII
Sbjct: 5 QAESHRARARPPVVRRVPLRQLLRVTSVAGGIQFGWALQLSLLTPYVQELGIPHKWASII 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGL VQPLVGH SDRC SRFGRRRPFI GA I AVL+IG SADIGWLLGDR
Sbjct: 65 WLCGPLSGLVVQPLVGHMSDRCNSRFGRRRPFIFAGAGLICFAVLIIGHSADIGWLLGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191
G+ RPRAI VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI
Sbjct: 125 GNTRPRAIGVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 184
Query: 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251
LGYATG+FS WFK+ PFT+TSACN DCANLKSAF+LD++F+ ITT +S +AA E PLG
Sbjct: 185 LGYATGAFSNWFKVFPFTVTSACNADCANLKSAFYLDIVFMVITTYLSITAAQESPLGLS 244
Query: 252 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 311
D+S P + + QSS EAFLWELFGTFRYF +W IL+VTAL W+GWFPFLLFDTDW
Sbjct: 245 DRSTPIAADVSGQSSHAQEAFLWELFGTFRYFPWPVWTILLVTALNWIGWFPFLLFDTDW 304
Query: 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 371
MGREIYGG+PNEGQNY GVR GA LMLNSV LGITSVLMEKLCRKWGAGFIWGISNIL
Sbjct: 305 MGREIYGGKPNEGQNYNIGVRTGAFALMLNSVFLGITSVLMEKLCRKWGAGFIWGISNIL 364
Query: 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
MALCFLAMLI YVA H+ Y GHDLPPNGIVI A++IF +LG PLAITYSVPYAL+S R
Sbjct: 365 MALCFLAMLITSYVANHIGYLGHDLPPNGIVITAVVIFAVLGVPLAITYSVPYALISSRI 424
Query: 432 ESLGLGQGLSLGVLNLAIVIPQV 454
E LGLGQGLS+GVLNLAIV PQV
Sbjct: 425 EPLGLGQGLSMGVLNLAIVTPQV 447
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063331|ref|XP_002301100.1| sucrose proton symporter [Populus trichocarpa] gi|222842826|gb|EEE80373.1| sucrose proton symporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/450 (76%), Positives = 389/450 (86%), Gaps = 7/450 (1%)
Query: 12 RASTSRAVARPPA-------RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
RAS SR RPP+ ++VPLR+LL+V S+AGGIQFGWALQLSLLTPYVQELGIP
Sbjct: 10 RASRSRQTNRPPSTRHQQQQSSRVPLRQLLRVTSIAGGIQFGWALQLSLLTPYVQELGIP 69
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H WASIIWLCGP+SGLFVQPLVG SDRCTSRFGRRRPFIV G++ IA++VL+IG SADI
Sbjct: 70 HKWASIIWLCGPLSGLFVQPLVGVMSDRCTSRFGRRRPFIVAGSLLIAISVLIIGHSADI 129
Query: 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184
GW LGDRG RPRAI FVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL
Sbjct: 130 GWWLGDRGGVRPRAIGAFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 189
Query: 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244
FMA+GNILG+ATGS++GW+K+ PFT+TSACN+DCANLKSAF+LDV+F+AIT CIS SAA
Sbjct: 190 FMAIGNILGFATGSYNGWYKVFPFTVTSACNIDCANLKSAFYLDVVFMAITACISISAAQ 249
Query: 245 EVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPF 304
E PL +S EE QS+ EAFLWELFGTFR F T+WIIL+VTAL W+GWFPF
Sbjct: 250 ESPLDLPARSMLADEEMPGQSNSEQEAFLWELFGTFRCFPSTVWIILLVTALNWIGWFPF 309
Query: 305 LLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364
LLFDTDWMGREIYGG+PNEGQNY TGVRMGA GLM NSV+LG+TSVLMEKLC KWGAGF+
Sbjct: 310 LLFDTDWMGREIYGGKPNEGQNYNTGVRMGAFGLMFNSVILGVTSVLMEKLCSKWGAGFL 369
Query: 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424
WG+SNILMALCFL+ML+L YVA H+ Y GH+LPP+ IV+ AL+IF +LG PLAITYSVPY
Sbjct: 370 WGLSNILMALCFLSMLVLSYVASHIGYMGHNLPPDSIVVIALVIFAVLGMPLAITYSVPY 429
Query: 425 ALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
A+VS R ESLGLGQGLS+GVLNLAIV+PQV
Sbjct: 430 AMVSSRIESLGLGQGLSMGVLNLAIVLPQV 459
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38327323|gb|AAR17700.1| sucrose transporter [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/455 (77%), Positives = 393/455 (86%), Gaps = 8/455 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
MP + R R ARP R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 1 MPAPDTDRH-------RVGARPAVRTRVPLRQLLRVASVACGIQFGWALQLSLLTPYVQE 53
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAWAS+IWLCGP+SGL VQPLVGH SDRCTSR+GRRRPFIV GA IAV+VL+IG
Sbjct: 54 LGIPHAWASVIWLCGPLSGLVVQPLVGHMSDRCTSRYGRRRPFIVVGAACIAVSVLIIGF 113
Query: 121 SADIGWLLGDRGD-FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVAN 179
SADIGWLLGDRG RPRAIAVFVFGFWILDVANN+TQGPCRALLADLT KD+RRTRVAN
Sbjct: 114 SADIGWLLGDRGGGVRPRAIAVFVFGFWILDVANNVTQGPCRALLADLTEKDYRRTRVAN 173
Query: 180 AYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239
AYFSLFMAVGN+LGYATGS S FK+ PF++T ACNV+CANLKSAFF+D FIAITT IS
Sbjct: 174 AYFSLFMAVGNVLGYATGSISYLFKVFPFSITPACNVNCANLKSAFFVDTAFIAITTWIS 233
Query: 240 ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWL 299
SAA PLGS +++ PF++EG QSS + EAFLWELFGTFRYF G++W+IL+V AL W+
Sbjct: 234 ISAAQVTPLGSSNRTTPFADEGPGQSSHIEEAFLWELFGTFRYFPGSVWLILLVIALNWI 293
Query: 300 GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359
GWFPFLLFDTDWMGREIYGG+PNEG NY+TGVRMGALGLMLNSV+LGITSVLMEKLCRKW
Sbjct: 294 GWFPFLLFDTDWMGREIYGGKPNEGINYSTGVRMGALGLMLNSVILGITSVLMEKLCRKW 353
Query: 360 GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419
GAGF+WGIS+ILM LCF AML++ +V + RGHDLPP+GIVIAAL++F +LG PLAIT
Sbjct: 354 GAGFVWGISSILMTLCFFAMLVITFVNKSIGVRGHDLPPDGIVIAALVVFAVLGIPLAIT 413
Query: 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
YSVPYALVS R ESLGLGQGLS+GVLNLAIVIPQV
Sbjct: 414 YSVPYALVSSRIESLGLGQGLSMGVLNLAIVIPQV 448
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74476785|gb|ABA08443.1| sucrose transporter type 4 [Manihot esculenta] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/443 (77%), Positives = 387/443 (87%), Gaps = 2/443 (0%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
+A + RA ARPP +VPLR+LL+V S+AGGIQFGWALQLSLLTPYVQELGIPHAWAS+I
Sbjct: 5 QAESHRARARPPVVRRVPLRQLLRVTSIAGGIQFGWALQLSLLTPYVQELGIPHAWASVI 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGL VQPLVG SDRC SRFGRRRPFI+ GAI I VAVL+IG SADIGWLLGDR
Sbjct: 65 WLCGPLSGLVVQPLVGPMSDRCASRFGRRRPFILAGAILIVVAVLIIGHSADIGWLLGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191
G+ RPRAI VFVFGFW+LDVANN TQGPCRALLADLTGKDHRRTRVANAYFSLFMA+GNI
Sbjct: 125 GNTRPRAIVVFVFGFWVLDVANNTTQGPCRALLADLTGKDHRRTRVANAYFSLFMAIGNI 184
Query: 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251
LG+ATG+FS WFK+ PFT+T+ACNVDCANLKSAF+LD++F+ IT+ +S +AA E PLG
Sbjct: 185 LGFATGAFSNWFKVFPFTVTTACNVDCANLKSAFYLDIVFMVITSYLSITAAQESPLGLS 244
Query: 252 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 311
++S P +E+ +SS EAFLWELFGTFRYF +W IL+VTAL W+GWFPFLLFDTDW
Sbjct: 245 NRSTPLAEDVSVESS--QEAFLWELFGTFRYFPWPVWTILLVTALNWIGWFPFLLFDTDW 302
Query: 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 371
MGREIYGG+PNEGQNY GVR G+ LMLNSV LGITSVLMEKLCRKWGAGFIWG+SNIL
Sbjct: 303 MGREIYGGKPNEGQNYNVGVRAGSFALMLNSVFLGITSVLMEKLCRKWGAGFIWGLSNIL 362
Query: 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
MALCFLAMLI YVA H+ Y GHDLPP+GIVI+A++IF +LG PLAITYSVPYAL+S R
Sbjct: 363 MALCFLAMLITSYVANHIGYLGHDLPPSGIVISAVVIFAVLGVPLAITYSVPYALISSRI 422
Query: 432 ESLGLGQGLSLGVLNLAIVIPQV 454
E LGLGQGLS+GVLNLAIVIPQV
Sbjct: 423 EPLGLGQGLSMGVLNLAIVIPQV 445
|
Source: Manihot esculenta Species: Manihot esculenta Genus: Manihot Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458976|ref|XP_002285568.1| PREDICTED: sucrose transport protein SUC4 [Vitis vinifera] gi|147802485|emb|CAN77414.1| hypothetical protein VITISV_000474 [Vitis vinifera] gi|302142125|emb|CBI19328.3| unnamed protein product [Vitis vinifera] gi|310877780|gb|ADP37121.1| sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/454 (78%), Positives = 390/454 (85%), Gaps = 6/454 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
SADIG LLGD D RPRA+A FV GFW+LDVANN+TQGPCRALLADLT KDHRRTRVANA
Sbjct: 118 SADIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
WFPFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 WFPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
SVPYAL+S R ESLGLGQGLS+GVLNLAIVIPQV
Sbjct: 417 SVPYALISTRIESLGLGQGLSMGVLNLAIVIPQV 450
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5882292|gb|AAD55269.1|AF182445_1 sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/454 (77%), Positives = 389/454 (85%), Gaps = 6/454 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
S DIG LLGD D RPRA+A FV GFW+LDVANN+TQGPCRALLADLT KDHRRTRVANA
Sbjct: 118 STDIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
WFPFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 WFPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
SVPYAL+S R ESLGLGQGLS+GVLNLAIVIPQV
Sbjct: 417 SVPYALISTRIESLGLGQGLSMGVLNLAIVIPQV 450
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|321531554|gb|ADW94617.1| sucrose transporter 4 [Populus tremula x Populus alba] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/450 (75%), Positives = 386/450 (85%), Gaps = 7/450 (1%)
Query: 12 RASTSRAVARPPA-------RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
R S SR RPP+ ++VPLR+LL+V S+AGGIQFGWALQLSLLTPYVQELGIP
Sbjct: 10 RVSRSRQTNRPPSTRHHQQQSSRVPLRQLLRVTSIAGGIQFGWALQLSLLTPYVQELGIP 69
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H WASIIWLCGP+SGLFVQPLVG SDRCTSRFGRRRPFI G++ IA++VL+IG SADI
Sbjct: 70 HKWASIIWLCGPLSGLFVQPLVGVMSDRCTSRFGRRRPFIFAGSLLIAISVLIIGHSADI 129
Query: 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184
GW LGDRG RPRAI FVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL
Sbjct: 130 GWWLGDRGGVRPRAIGAFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 189
Query: 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244
FMAVGNILG+ATGS++GW+K+ PFT+TSACN+DCANLKSAF+LDV+F+AIT CIS +AA
Sbjct: 190 FMAVGNILGFATGSYNGWYKVFPFTVTSACNIDCANLKSAFYLDVVFMAITACISIAAAQ 249
Query: 245 EVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPF 304
E PL +S EE S+ EAF+WELFGTFR F T+WIIL+VTAL W+GWFPF
Sbjct: 250 ESPLDLPARSMLADEETPGHSNSEQEAFIWELFGTFRCFPSTVWIILLVTALNWIGWFPF 309
Query: 305 LLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364
LLFDTDWMGREIYGG+PNEGQNY TGVRMGA GLM NSV+LG+TSVLMEKLC KWGAGF+
Sbjct: 310 LLFDTDWMGREIYGGKPNEGQNYNTGVRMGAFGLMFNSVILGVTSVLMEKLCSKWGAGFL 369
Query: 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424
WG+SNILMALCFL+ML+L YVA H+ Y GH+LPP+ IV+ AL+IF +LG PLAITYSVPY
Sbjct: 370 WGLSNILMALCFLSMLVLSYVASHIGYMGHNLPPDSIVVIALVIFAVLGMPLAITYSVPY 429
Query: 425 ALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
A+VS R ESLGLGQGLS+GVLNLAIV+PQV
Sbjct: 430 AMVSSRIESLGLGQGLSMGVLNLAIVLPQV 459
|
Source: Populus tremula x Populus alba Species: Populus tremula x Populus alba Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6434829|gb|AAF08329.1|AF021808_1 putative sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/454 (77%), Positives = 388/454 (85%), Gaps = 6/454 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
SADIG LLGD D RPRA+A FV GFW+LDVANN+TQGPCRALLADLT KDHRRTRVANA
Sbjct: 118 SADIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
PFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 LLPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
SVPYAL+S R ESLGLGQGLS+GVLNLAIVIPQV
Sbjct: 417 SVPYALISTRIESLGLGQGLSMGVLNLAIVIPQV 450
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|408384444|gb|AFU61907.1| sucrose transporter 1 [Fragaria x ananassa] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/454 (75%), Positives = 389/454 (85%), Gaps = 9/454 (1%)
Query: 4 DERQRSKSRASTSR---AVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
D + R T+R AV RP A+ LR+L +VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 25 DPERHHHHRGRTTRPPAAVVRP---ARPSLRQLFRVASVACGIQFGWALQLSLLTPYVQE 81
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAWAS+IWLCGP+SGL VQP+VGH SDR TSRFGRRRPFIV GA IAV+VL+IG
Sbjct: 82 LGIPHAWASVIWLCGPLSGLIVQPMVGHMSDRSTSRFGRRRPFIVAGAACIAVSVLIIGY 141
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
SADIGWLLGDRG RPRAI VFVFGFWILDVANN+TQGPCRALLADLTGKDHRRTRVANA
Sbjct: 142 SADIGWLLGDRGGVRPRAIGVFVFGFWILDVANNVTQGPCRALLADLTGKDHRRTRVANA 201
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLFMAVGNILGYATG+FS W+K+ PFTLTSAC+V+CANLKSAF +D+ FIA+TT +S
Sbjct: 202 YFSLFMAVGNILGYATGAFSYWYKVFPFTLTSACDVNCANLKSAFIIDIAFIALTTYLST 261
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
SAA E+PLGS D++ PF++E SS EAFLWELFGTFRYFS +IW+IL+VT L W+G
Sbjct: 262 SAAQELPLGSSDRNTPFADEEPGHSSQAEEAFLWELFGTFRYFSASIWLILLVTGLNWIG 321
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
WFPFLLFDTDWMGREIYGGEPNEG+NY+ GVRMGA GLMLNS++LG TS+LME+LCRKWG
Sbjct: 322 WFPFLLFDTDWMGREIYGGEPNEGRNYSDGVRMGAFGLMLNSIMLGATSLLMERLCRKWG 381
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
+GF+WGISN +MAL FLAML++ +V + GHD PP GIVIA+L++FTILG PLAITY
Sbjct: 382 SGFVWGISNFIMALSFLAMLVITFVNKSI---GHDSPPLGIVIASLVVFTILGIPLAITY 438
Query: 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
SVPYAL+S R ESLGLGQGLS+GVLNLAIV+PQV
Sbjct: 439 SVPYALISSRIESLGLGQGLSMGVLNLAIVVPQV 472
|
Source: Fragaria x ananassa Species: Fragaria x ananassa Genus: Fragaria Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| TAIR|locus:2024422 | 510 | SUT4 "AT1G09960" [Arabidopsis | 0.912 | 0.819 | 0.712 | 3.8e-165 | |
| TAIR|locus:2064253 | 492 | SUC8 "AT2G14670" [Arabidopsis | 0.903 | 0.841 | 0.520 | 5e-115 | |
| TAIR|locus:2028947 | 491 | SUC7 "AT1G66570" [Arabidopsis | 0.903 | 0.843 | 0.518 | 1.3e-114 | |
| TAIR|locus:2158352 | 492 | SUC6 "AT5G43610" [Arabidopsis | 0.903 | 0.841 | 0.511 | 2.5e-113 | |
| TAIR|locus:2160732 | 491 | SUC9 "AT5G06170" [Arabidopsis | 0.903 | 0.843 | 0.505 | 7.6e-112 | |
| TAIR|locus:2199633 | 512 | SUC2 "AT1G22710" [Arabidopsis | 0.908 | 0.812 | 0.512 | 1.2e-111 | |
| TAIR|locus:2016069 | 513 | SUC1 "AT1G71880" [Arabidopsis | 0.914 | 0.816 | 0.513 | 2.9e-110 | |
| TAIR|locus:2016074 | 512 | SUC5 "AT1G71890" [Arabidopsis | 0.910 | 0.814 | 0.486 | 8.3e-106 | |
| TAIR|locus:2056675 | 594 | SUT2 "AT2G02860" [Arabidopsis | 0.473 | 0.365 | 0.535 | 1.6e-98 | |
| UNIPROTKB|Q10R54 | 538 | SUT1 "Sucrose transport protei | 0.912 | 0.776 | 0.438 | 5.9e-89 |
| TAIR|locus:2024422 SUT4 "AT1G09960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1607 (570.8 bits), Expect = 3.8e-165, P = 3.8e-165
Identities = 303/425 (71%), Positives = 343/425 (80%)
Query: 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFS 90
R LL+VASVA GIQFGWALQLSLLTPYVQELGIPHAWAS+IWLCGP+SGLFVQPLVGH S
Sbjct: 41 RVLLRVASVACGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSS 100
Query: 91 DRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR-GDFRPRAIAVFVFGFWIL 149
DRCTS++GRRRPFIV GA++I+++V++IG +ADIGW GDR G +PRAI FV GFWIL
Sbjct: 101 DRCTSKYGRRRPFIVAGAVAISISVMVIGHAADIGWAFGDREGKIKPRAIVAFVLGFWIL 160
Query: 150 DVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209
DVANNMTQGPCRALLADLT D+RRTRVAN YFSLFMAVGN+LGYATGS++GW+KI FT
Sbjct: 161 DVANNMTQGPCRALLADLTENDNRRTRVANGYFSLFMAVGNVLGYATGSYNGWYKIFTFT 220
Query: 210 LTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSSDVH 269
T ACNV+CANLKSAF++DV HEVPL S + E H Q+S
Sbjct: 221 KTVACNVECANLKSAFYIDVVFIAITTILSVSAAHEVPLAS------LASEAHGQTSGTD 274
Query: 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYAT 329
EAFL E+FGTFRYF G +WIIL+VTALTW+GWFPF+LFDTDWMGREIYGGEPN G +Y+
Sbjct: 275 EAFLSEIFGTFRYFPGNVWIILLVTALTWIGWFPFILFDTDWMGREIYGGEPNIGTSYSA 334
Query: 330 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHM 389
GV MGALGLMLNSV LGITSVLMEKLCRKWGAGF+WGISNILMA+CFL M+I +VA H+
Sbjct: 335 GVSMGALGLMLNSVFLGITSVLMEKLCRKWGAGFVWGISNILMAICFLGMIITSFVASHL 394
Query: 390 DYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXXXXXXXXXXXAI 449
Y GH+ PP IV AA++IFTILG PLAITYSVPYAL+SIR ES AI
Sbjct: 395 GYIGHEQPPASIVFAAVLIFTILGIPLAITYSVPYALISIRIESLGLGQGLSLGVLNLAI 454
Query: 450 VIPQV 454
VIPQV
Sbjct: 455 VIPQV 459
|
|
| TAIR|locus:2064253 SUC8 "AT2G14670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 227/436 (52%), Positives = 294/436 (67%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGPVSGL VQP VG+
Sbjct: 29 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRCTSRFGRRRPFI GA+ +AVAV+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 89 FSDRCTSRFGRRRPFIATGALLVAVAVVLIGYAADFGHSMGDKIDKPVKMRAVVIFALGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 209 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 262
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 316
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGFIWGISNILMALCF-LAM 379
Y G+ +GALGLMLNS+VLGI S+ +E + +K GA +WG NI++A+C + +
Sbjct: 317 KMKKLYNQGIHVGALGLMLNSIVLGIVSLGIEGISKKIGGAKRLWGAVNIILAVCLAMTV 376
Query: 380 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 438
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S
Sbjct: 377 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 436
Query: 439 XXXXXXXXXAIVIPQV 454
AIVIPQ+
Sbjct: 437 GLSLGVLNMAIVIPQM 452
|
|
| TAIR|locus:2028947 SUC7 "AT1G66570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 226/436 (51%), Positives = 293/436 (67%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W S IWLCGPVSGL VQP VG+
Sbjct: 28 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWPSFIWLCGPVSGLLVQPSVGY 87
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRCTSRFGRRRPFI GA+ +AV+V+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 88 FSDRCTSRFGRRRPFIATGALLVAVSVVLIGYAADFGHSMGDKIDKPVKMRAVVIFALGF 147
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 148 WILDVANNTLQGPCRAFLGDLAAGDAQKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 207
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 208 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 261
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 262 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 315
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 379
Y G+ +GALGLMLNS+VLG+ S+ +E + RK G A +WG NI++A+C + +
Sbjct: 316 KMKKLYNQGIHVGALGLMLNSIVLGVMSLGIEGISRKMGGAKRLWGAVNIILAVCLAMTV 375
Query: 380 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 438
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S
Sbjct: 376 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 435
Query: 439 XXXXXXXXXAIVIPQV 454
AIVIPQ+
Sbjct: 436 RLSLGVLNMAIVIPQM 451
|
|
| TAIR|locus:2158352 SUC6 "AT5G43610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
Identities = 223/436 (51%), Positives = 290/436 (66%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
P+RK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGPVSGL VQP VG+
Sbjct: 29 PMRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRC SRFGRRRPFI GA+ +AVAV+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 89 FSDRCKSRFGRRRPFIAMGALLVAVAVVLIGYAADFGHSMGDKVDEPVKMRAVVIFALGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 209 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 262
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 316
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 379
Y G+ +G LGLMLNS+VLG S+ +E + RK G A +WG NI++A+C + +
Sbjct: 317 KMKKLYNQGIHVGGLGLMLNSIVLGFMSLGIEGISRKMGGAKRLWGAVNIILAVCLAMTV 376
Query: 380 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 438
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S
Sbjct: 377 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 436
Query: 439 XXXXXXXXXAIVIPQV 454
IVIPQ+
Sbjct: 437 GLSLGVLNMTIVIPQM 452
|
|
| TAIR|locus:2160732 SUC9 "AT5G06170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 220/435 (50%), Positives = 288/435 (66%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGP+SGL VQP VG+
Sbjct: 29 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPISGLLVQPTVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRC SRFGRRRPFI GA+ +A+AV+LIG +AD G +GD+ D + RA+ FV GF
Sbjct: 89 FSDRCKSRFGRRRPFIATGALLVALAVILIGFAADFGHTMGDKLDEAVKIRAVGFFVVGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA FS FMAVGN+LGYA GS++ KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAIFSFFMAVGNVLGYAAGSYTNLHKIF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS F + + + Q +P ++ +E++
Sbjct: 209 PFTVTKACDIYCANLKSCFIISITLLIVLTIIALWYVED------KQWSPNADSDNEKTP 262
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++L VTAL W+ WFPFLL+DTDWMGRE+YGG+ + G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLAVTALNWIAWFPFLLYDTDWMGREVYGGD-SAGDD 316
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCF-LAML 380
Y G+++G+LGLMLNS+VLG+ S+++ + +K GA +WG NI++A+C + +L
Sbjct: 317 KMKKLYNHGIQVGSLGLMLNSIVLGVMSLVIGVISKKIGAKRLWGAVNIILAVCLAMTVL 376
Query: 381 ILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXXX 439
+ H G LP N I AL +F ILG PLAIT+S+P+AL SI + S
Sbjct: 377 VTKKAEEHRKIAGRMALPTNAIRDGALSLFAILGIPLAITFSIPFALASIISSSSGAGQG 436
Query: 440 XXXXXXXXAIVIPQV 454
AIVIPQ+
Sbjct: 437 LSLGVLNMAIVIPQM 451
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| TAIR|locus:2199633 SUC2 "AT1G22710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
Identities = 224/437 (51%), Positives = 293/437 (67%)
Query: 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
LRK++ V+S+A G+QFGWALQLSLLTPYVQ LGIPH WAS+IWLCGP+SG+ VQP+VG+
Sbjct: 29 LRKIISVSSIAAGVQFGWALQLSLLTPYVQLLGIPHKWASLIWLCGPISGMLVQPIVGYH 88
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRP--RAIAVFVFGFW 147
SDRCTSRFGRRRPFIV GA + VAV LIG +ADIG +GD+ D P RAIA+F GFW
Sbjct: 89 SDRCTSRFGRRRPFIVAGAGLVTVAVFLIGYAADIGHSMGDQLDKPPKTRAIAIFALGFW 148
Query: 148 ILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207
ILDVANN QGPCRA LADL+ + ++TR ANA+FS FMAVGN+LGYA GS+ +K++P
Sbjct: 149 ILDVANNTLQGPCRAFLADLSAGNAKKTRTANAFFSFFMAVGNVLGYAAGSYRNLYKVVP 208
Query: 208 FTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSSD 267
FT+T +C++ CANLK+ FFL + E P + + +A +G ++S+
Sbjct: 209 FTMTESCDLYCANLKTCFFLSITLLLIVTFVSLCYVKEKPW-TPEPTA----DG--KASN 261
Query: 268 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN- 326
V F E+FG F+ +W++LIVTAL W+ WFPFLLFDTDWMGRE+YGG +
Sbjct: 262 V--PFFGEIFGAFKELKRPMWMLLIVTALNWIAWFPFLLFDTDWMGREVYGGNSDATATA 319
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 379
Y GVR GALGLMLN++VLG S+ +E + RK G A +WGI N ++A+C + +
Sbjct: 320 ASKKLYNDGVRAGALGLMLNAIVLGFMSLGVEWIGRKLGGAKRLWGIVNFILAICLAMTV 379
Query: 380 LILYYVAIHM-DYRGHDL-PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXX 437
++ H D+ G PP + AL +F ILG P AIT+S+P+AL SI + +
Sbjct: 380 VVTKQAENHRRDHGGAKTGPPGNVTAGALTLFAILGIPQAITFSIPFALASIFSTNSGAG 439
Query: 438 XXXXXXXXXXAIVIPQV 454
AIV+PQ+
Sbjct: 440 QGLSLGVLNLAIVVPQM 456
|
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| TAIR|locus:2016069 SUC1 "AT1G71880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
Identities = 224/436 (51%), Positives = 286/436 (65%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A G+QFGWALQLSLLTPYVQ LGIPH W+S+IWLCGPVSG+ VQP+VG
Sbjct: 29 PLRKIISVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPVSGMIVQPIVGF 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
SDRC S+FGRRRPFI GA +AVAV LIG +AD G+ +GD+ + + RAI +F GF
Sbjct: 89 HSDRCRSKFGRRRPFIATGAALVAVAVFLIGYAADFGYKMGDKLEEKVKVRAIGIFALGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA LADL D +RTRVANA+FS FMAVGN+LGYA GS++ K+
Sbjct: 149 WILDVANNTLQGPCRAFLADLAAGDAKRTRVANAFFSFFMAVGNVLGYAAGSYTNLHKMF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLK+ FFL + ++ P + + E++S
Sbjct: 209 PFTMTKACDIYCANLKTCFFLSITLLLIVTVTSLWYVND----KQWSPPPRNADDDEKTS 264
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEP--NEG 324
V E+FG F+ +W++LIVTAL W+ WFPFLLFDTDWMGRE++GG+ NE
Sbjct: 265 SV--PLFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLFDTDWMGREVFGGDSDGNER 322
Query: 325 QN--YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCFLAMLI 381
Y+ GV+ GA+GLM NS+VLG S+ +E + RK G A +WGI N ++A LAM +
Sbjct: 323 SKKLYSLGVQSGAMGLMFNSIVLGFMSLGVEWIGRKLGGAKRLWGIVNFILA-AGLAMTV 381
Query: 382 LY--YVAIHMDYRGHDLPPNGIVIA-ALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 438
L + H G P+ V A AL +F +LG PLAIT+S P+AL SI +
Sbjct: 382 LVTKFAEDHRKTAGDLAGPSASVKAGALSLFAVLGIPLAITFSTPFALASIFSSCSGAGQ 441
Query: 439 XXXXXXXXXAIVIPQV 454
AIVIPQ+
Sbjct: 442 GLSLGVLNLAIVIPQM 457
|
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| TAIR|locus:2016074 SUC5 "AT1G71890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
Identities = 212/436 (48%), Positives = 280/436 (64%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A G+QFGWALQLSLLTPY+Q LGIPH W+S +WLCGP+SG+ VQP+VG+
Sbjct: 30 PLRKIISVASIAAGVQFGWALQLSLLTPYIQLLGIPHKWSSYMWLCGPISGMIVQPIVGY 89
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR--GDFRPRAIAVFVFGF 146
SDRC SRFGRRRPFI G +AV+V LIG +AD+G GD+ R RAI +F+ GF
Sbjct: 90 HSDRCESRFGRRRPFIAAGVALVAVSVFLIGFAADMGHSFGDKLENKVRTRAIIIFLTGF 149
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
W LDVANN QGPCRA LADL D ++TRVANA FS FMAVGN+LGYA GS++ K+
Sbjct: 150 WFLDVANNTLQGPCRAFLADLAAGDAKKTRVANACFSFFMAVGNVLGYAAGSYTNLHKMF 209
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLK+ FFL + + Q +P + E++S
Sbjct: 210 PFTMTKACDIYCANLKTCFFLSITLLLIVTFSSLWYVKD------KQWSPPQGDKEEKTS 263
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
+ F E+FG R+ + ++LIVT + W+ WFPF+L+DTDWMGRE+YGG + +
Sbjct: 264 SLF--FFGEIFGAVRHMKRPMVMLLIVTVINWIAWFPFILYDTDWMGREVYGGNSDGDER 321
Query: 327 ----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCFLAMLI 381
Y GV+ GALGLM NS++LG S+ +E + RK G A +WG N ++A+ LAM +
Sbjct: 322 SKKLYDQGVQAGALGLMFNSILLGFVSLGVESIGRKMGGAKRLWGCVNFILAIG-LAMTV 380
Query: 382 LYYVAI--HMDYRGHDL-PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 438
L + H + G P +GI +FT+LG PLAITYS+P+AL SI + +
Sbjct: 381 LVTKSAEHHREIAGPLAGPSSGIKAGVFSLFTVLGIPLAITYSIPFALASIFSTNSGAGQ 440
Query: 439 XXXXXXXXXAIVIPQV 454
AI IPQ+
Sbjct: 441 GLSLGVLNIAICIPQM 456
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| TAIR|locus:2056675 SUT2 "AT2G02860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
Identities = 121/226 (53%), Positives = 155/226 (68%)
Query: 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR 92
L+ +VA G+QFGWALQLSLLTPY+Q LGI HA++S IWLCGP++GL VQP VG +SD+
Sbjct: 63 LVLSCTVAAGVQFGWALQLSLLTPYIQTLGISHAFSSFIWLCGPITGLVVQPFVGIWSDK 122
Query: 93 CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDF-------RPRAIAVFVFG 145
CTS++GRRRPFI+ G+ I++AV++IG SADIG+LLGD + R RA VF+ G
Sbjct: 123 CTSKYGRRRPFILVGSFMISIAVIIIGFSADIGYLLGDSKEHCSTFKGTRTRAAVVFIIG 182
Query: 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205
FW+LD+ANN QGP RALLADL+G D R T ANA F L+MA+GNILG++ G+ W +
Sbjct: 183 FWLLDLANNTVQGPARALLADLSGPDQRNT--ANAVFCLWMAIGNILGFSAGASGKWQEW 240
Query: 206 LPFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSH 251
PF + AC C NLK+AF L V E+P S+
Sbjct: 241 FPFLTSRACCAACGNLKAAFLLAVVFLTICTLVTIYFAKEIPFTSN 286
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| UNIPROTKB|Q10R54 SUT1 "Sucrose transport protein SUT1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
Identities = 193/440 (43%), Positives = 261/440 (59%)
Query: 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
L +L+ VAGG+Q+GWALQLSLLTPYVQ LG+ HA S +WLCGP++G+ VQP VG +
Sbjct: 50 LGRLILSGMVAGGVQYGWALQLSLLTPYVQTLGLSHALTSFMWLCGPIAGMVVQPCVGLY 109
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD-------FRPRAIAVF 142
SDRCTS++GRRRP+I+ G + I +AV++IG SADIG+ +GD + R A V+
Sbjct: 110 SDRCTSKWGRRRPYILTGCVLICLAVVVIGFSADIGYAMGDTKEDCSVYHGSRWHAAIVY 169
Query: 143 VFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 202
V GFW+LD +NN QGP RAL+ADL+G+ T AN+ F +MA+GNILGY++GS + W
Sbjct: 170 VLGFWLLDFSNNTVQGPARALMADLSGRHGPGT--ANSIFCSWMAMGNILGYSSGSTNNW 227
Query: 203 FKILPFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGH 262
K PF T AC CANLK AF + V EVP + A + +
Sbjct: 228 HKWFPFLKTRACCEACANLKGAFLVAVIFLSLCLVITLIFAKEVPFKGN---AALPTKSN 284
Query: 263 EQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPN 322
E + L L G FR + +LIVT LTWL WFPF+L+DTDWMGREIY G+P
Sbjct: 285 EPAEPEGTGPLAVLKG-FRNLPTGMPSVLIVTGLTWLSWFPFILYDTDWMGREIYHGDPK 343
Query: 323 ----EGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLA 378
+ + + GVR GA GL+LNS+VLG +S L+E +CRK G +W SN L+ + A
Sbjct: 344 GTDPQIEAFNQGVRAGAFGLLLNSIVLGFSSFLIEPMCRKVGPRVVWVTSNFLVCIAMAA 403
Query: 379 MLILYYVAIHMDYRGHD----LPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESX 434
++ + ++ D+ G I L++F LG PLA+ YSVP+A+ + +
Sbjct: 404 TALISFWSLK-DFHGTVQKAITADKSIKAVCLVLFAFLGVPLAVLYSVPFAVTAQLAATR 462
Query: 435 XXXXXXXXXXXXXAIVIPQV 454
+IVIPQV
Sbjct: 463 GGGQGLCTGVLNISIVIPQV 482
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FE59 | SUC4_ARATH | No assigned EC number | 0.7375 | 0.9716 | 0.8725 | yes | no |
| Q03411 | SUT_SPIOL | No assigned EC number | 0.5462 | 0.9432 | 0.8228 | N/A | no |
| A2ZN77 | SUT2_ORYSI | No assigned EC number | 0.6643 | 0.9148 | 0.8363 | N/A | no |
| Q0ILJ3 | SUT2_ORYSJ | No assigned EC number | 0.6636 | 0.9170 | 0.8383 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pm.C_LG_II0488 | sucrose proton symporter (510 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 458 | |||
| TIGR01301 | 477 | TIGR01301, GPH_sucrose, GPH family sucrose/H+ symp | 0.0 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-08 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 5e-08 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 1e-06 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.004 |
| >gnl|CDD|233349 TIGR01301, GPH_sucrose, GPH family sucrose/H+ symporter | Back alignment and domain information |
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Score = 661 bits (1707), Expect = 0.0
Identities = 287/434 (66%), Positives = 331/434 (76%), Gaps = 9/434 (2%)
Query: 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVG 87
VPLRKLL+VASVA G+QFGWALQLSLLTPYVQELGIPHAWASIIWLCGP+SGL VQPLVG
Sbjct: 1 VPLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVG 60
Query: 88 HFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD--RGDFRPRAIAVFVFG 145
+ SDRCTSRFGRRRPFI GA +A AV+LIG +ADIG L GD +PRAI VFV G
Sbjct: 61 YLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVG 120
Query: 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205
FWILDVANNM QGPCRA LADLTG D RRTR+ANAYFS FMA+GN+LGYA G++SG +KI
Sbjct: 121 FWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI 180
Query: 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265
PFT T AC V CANLKS F +D+I +AI T I+ SA E PL D + E S
Sbjct: 181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI--NSEAAPPS 238
Query: 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQ 325
EAF ELFG F+Y +WI+L+VT L W+ WFPF+LFDTDWMGRE+YGG N+G
Sbjct: 239 KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA 298
Query: 326 NYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG-FIWGISNILMALCFLAMLILYY 384
Y GVR GA GLMLNSVVLGITS+ MEKLCR WGAG +WGI NI++A+C A +++ Y
Sbjct: 299 KYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTY 358
Query: 385 VAIHMDYRGHDL----PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGL 440
VA + Y D PP GI +ALI+F ILG PLAITYS+P+AL SIR+ +LG GQGL
Sbjct: 359 VAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL 418
Query: 441 SLGVLNLAIVIPQV 454
S+GVLNLAIVIPQ+
Sbjct: 419 SMGVLNLAIVIPQI 432
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. Length = 477 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 77/460 (16%), Positives = 145/460 (31%), Gaps = 72/460 (15%)
Query: 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCG--------PVSGLFVQPLVG 87
VA++ GG FG+ + + + + I C VS V L+G
Sbjct: 4 VAAL-GGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 88 HFSDR-CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGF 146
RFGR++ ++ + + + LL G + + + R I G
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFV-IGALLQGFAKGKSFYM----LIVGRVIVGLGVGG 117
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG----- 201
+ V ++++ K R + + L + G ++ G
Sbjct: 118 ISVLVPM---------YISEIAPKKLRGALGS--LYQLGITFGILVAAIIGLGLNKYSNS 166
Query: 202 ----WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF 257
L F + L + V+ + A A G D
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLE---EARAVLAKLRGVSDVDQEI 223
Query: 258 SEE--GHEQSSDVHEAFLWELFGTFRYF-----SGTIWIILIVTALTWLGWFPFLLFDTD 310
EE E+S + +A ELF + I +T + + ++ +F+T
Sbjct: 224 QEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETL 283
Query: 311 WMGREIYGGEPNEGQNYAT-----------GVR----MGALGLMLNSVVLGITSVLMEKL 355
+ + N+ G R +GA G+ + +VLG+ + + K
Sbjct: 284 GLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK- 342
Query: 356 CRKWGAGFIWGISNILMALCFLAML-ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414
GAG + + +L F + +V + +L P G+ A+ I T
Sbjct: 343 --SKGAGIVAIVFILLFIAFFALGWGPVPWVIV------SELFPLGVRPKAMAIATAANW 394
Query: 415 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454
+ + + I G + G+L L I+
Sbjct: 395 --LANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFF 432
|
Length = 449 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 75/382 (19%), Positives = 142/382 (37%), Gaps = 79/382 (20%)
Query: 57 YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116
Y LG+ A I+L + F P+VG DR +R+G+ RP+++ GA I +A+
Sbjct: 26 YTDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDRTRTRWGKFRPWLLIGA--IPLAIS 83
Query: 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL-DVANNMTQGPCRALLADLTGKDHRRT 175
L+ L A L A ++ F +IL +A P +L+ LT RT
Sbjct: 84 LVLLFATPFGLSM-------TAKLIYAFITYILLGLAYTFVNIPYWSLIPVLTRDPKERT 136
Query: 176 RVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAI- 234
+A +Y + +G +L I P + N +FL + IAI
Sbjct: 137 SLA-SYRRIGATIGGLLVAV---------IAPPLVALLGG---GNGAKGYFLAALIIAIL 183
Query: 235 ---TTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGT-FRYFSGTIWII 290
I + E +Q S L ++F F+ + + I+
Sbjct: 184 AVVGFLICFAGTKERVSVPPEQKEKVS--------------LRDMFKALFK--NRPLLIL 227
Query: 291 LIVTALTWLGWF----PFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346
L++ L L L + T +G + ++ L++ ++
Sbjct: 228 LLLYLLNALAMAVRNGLLLYYFTYVLGNA----------------GLFSVLLLIGTIAAI 271
Query: 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAAL 406
+ + L L +++G + + +L A+ + + L P G + L
Sbjct: 272 LGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL---------------PPGSLWLFL 316
Query: 407 IIFTILGGPLAITYSVPYALVS 428
++ + G L + +P+A+++
Sbjct: 317 VLVVLAGIGLGLATLLPWAMLA 338
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 79/420 (18%), Positives = 145/420 (34%), Gaps = 82/420 (19%)
Query: 22 PPARAKVPLRKLLKVAS--VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSG 79
+ K+ L++ + A FG + L LL Y G+ A A I+L +
Sbjct: 3 NSSSKKLSLKEKIGYGLGDFASNFAFG-IVVLYLLFFYTDVFGLSAALAGTIFLVARIID 61
Query: 80 LFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAI 139
P++G DR SR+GR RP+++ GAI A+ +L+ ++ D G
Sbjct: 62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD----FSMTGKL----- 112
Query: 140 AVFVFG-FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL-GYATG 197
++ + +L + + P AL ++T R + ++ +F ++G +L
Sbjct: 113 -IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASL-TSWRMVFASLGGLLVAVLFP 170
Query: 198 SFSGWF----KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253
F K L + T A L VI + I E +
Sbjct: 171 PLVKLFGGGDKALGYQGT------------ALVLGVIGV-ILLLFCFFNVKERVV----- 212
Query: 254 SAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLL-----FD 308
E + V F+ ++L++ L F +
Sbjct: 213 ------ETQPTKTGVKLKLKDSFLLIFK---NRPLLLLLLMNLLLFIAFNIRGSIMVYYV 263
Query: 309 TDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGIS 368
T +G L L+ + L I +L +L +K+G ++ I
Sbjct: 264 TYVLGDPE---------------LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIG 308
Query: 369 NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428
+L+A+ +L + P G V+ ++ I G I +P+A+V+
Sbjct: 309 LLLLAVGYLLLYFT---------------PAGSVVLIVVALIIAGVGTGIANPLPWAMVA 353
|
Length = 467 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 27/181 (14%)
Query: 30 LRKLLKVASVAGGIQFGWALQLSLLTPY-----VQELGIPHAWASIIWLCGPVSGLFVQP 84
L K K + G+ L+T Y Q LG+ A ++ + + P
Sbjct: 214 LTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIP 273
Query: 85 LVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVF 144
L G SD R GRR I+ ++ +AV L+ D G +F F
Sbjct: 274 LSGALSD----RIGRRPVLIIFTVLAALLAVPLLMALLDSGS------------FTLFFF 317
Query: 145 GFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF-SGWF 203
+ + M GP + L +L + R T + AY + + + +
Sbjct: 318 LVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLAY-----NLAGAIFGGFAPYIAAAL 372
Query: 204 K 204
Sbjct: 373 V 373
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 71/419 (16%), Positives = 134/419 (31%), Gaps = 78/419 (18%)
Query: 36 VASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCT 94
+ A G +L L Y+ ++LGI ++ + QPL G SDR
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR-- 58
Query: 95 SRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANN 154
FGRRR ++ G + A+ +LL+ ++ + LL + + G
Sbjct: 59 --FGRRR-VLLIGLLLFALGLLLLLFASSLWLLL----------VLRVLQGL-----GGG 100
Query: 155 MTQGPCRALLADLTGKDHRRTRVA--NAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 212
AL+AD + R + +A F L A+G +LG S GW
Sbjct: 101 ALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGW---------- 150
Query: 213 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272
++AF + I + ++A P S + +
Sbjct: 151 ---------RAAFLILAILALLAAVLAALLLPRPPPESKRPKP---------AEEAPAPL 192
Query: 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVR 332
+ R + + L++ + +L P +
Sbjct: 193 VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYL---------------PLYQEVLGLSAL 237
Query: 333 MGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR 392
+ L L L ++ I +L+ +L + G ++ +L+ L L + +L
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALL---------- 287
Query: 393 GHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI 451
+ ++ AL++ G + + E G GL +L +
Sbjct: 288 -SLTESSLWLLVALLLLGFGAGLVFPALNA-LVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 22/155 (14%)
Query: 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104
L L ++LG+ + A +I + L G+ SD RFGRRR +
Sbjct: 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD----RFGRRRVLL 68
Query: 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALL 164
+ + ++LL ++ + + G ++L + AL+
Sbjct: 69 LGLLLFALGSLLL----------------AFASSLWLLLVGRFLLGLGGGALYPAAAALI 112
Query: 165 ADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199
A+ R A FS +G +LG G
Sbjct: 113 AEWFPPKERGR--ALGLFSAGFGLGALLGPLLGGL 145
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 19/193 (9%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P+ + + + + PA + +L + F + L+ L Y +
Sbjct: 172 LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV 231
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LG+ A ++ + G + L+G SD R GRRR ++ + I A+ L L
Sbjct: 232 LGLSALLAGLLLGLAGLLGAIGRLLLGRLSD----RLGRRRRLLLALLLLILAALGLALL 287
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
S L +A+ + GF + AL++DL K+ R T A+
Sbjct: 288 SLTESSLWL--------LVALLLLGF-----GAGLVFPALNALVSDLAPKEERGT--ASG 332
Query: 181 YFSLFMAVGNILG 193
++ ++G LG
Sbjct: 333 LYNTAGSLGGALG 345
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 100.0 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.97 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.97 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.96 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.96 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.96 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.95 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.95 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.95 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.95 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.94 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.94 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.94 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.94 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.94 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.94 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.94 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.94 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.94 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.94 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.94 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.93 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.93 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.93 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.93 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.93 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.93 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.92 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.92 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.92 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.92 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.92 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.92 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.91 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.91 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.91 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.91 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.9 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.88 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.87 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.87 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.86 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.85 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.85 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.85 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.84 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.83 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.82 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.82 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.81 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.81 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.81 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.8 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.8 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.79 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.76 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.75 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.73 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.69 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.67 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.66 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.63 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.55 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.54 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.54 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.46 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.45 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.45 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.4 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.39 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.39 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.37 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.36 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.36 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.35 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.35 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.34 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.34 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.32 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.31 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.3 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.27 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.27 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.27 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.27 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.27 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.26 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.26 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.25 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.25 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.25 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.24 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.24 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.22 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.21 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.2 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.19 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.19 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.19 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.18 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.18 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.16 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 99.15 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.14 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.13 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.13 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.13 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.12 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.12 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.11 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.11 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.1 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.1 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.09 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.08 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.08 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.07 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.05 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.04 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.04 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.04 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.03 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.01 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.0 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.0 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.98 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.97 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.97 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.94 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.93 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.93 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.91 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.9 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.9 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.9 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.89 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.86 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.86 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.84 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.84 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.84 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.83 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.83 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.82 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.82 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.82 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.81 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.8 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.79 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.77 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.76 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.75 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.74 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.72 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.72 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.71 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.71 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.7 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.68 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.68 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.66 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.64 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.62 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.62 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.61 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.61 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.6 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.6 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.57 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.53 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.51 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.51 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.43 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.43 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.41 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.39 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.38 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.36 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.33 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.33 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.3 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.27 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.23 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.23 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.22 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.21 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.19 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.09 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.96 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.95 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.93 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.91 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.89 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.86 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.84 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.79 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.66 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.64 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 97.64 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.6 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.44 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.91 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.83 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.75 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.75 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.59 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.56 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.48 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.28 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.21 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.98 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 95.94 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.11 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 94.91 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 94.63 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 94.26 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 93.97 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 92.86 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.54 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 92.5 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 92.5 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.56 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 90.25 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 90.25 | |
| PF11947 | 153 | DUF3464: Protein of unknown function (DUF3464); In | 89.82 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 89.02 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 88.58 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 87.91 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 87.24 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 86.17 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 82.75 |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=331.32 Aligned_cols=427 Identities=67% Similarity=1.162 Sum_probs=344.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
+.++++.++...++.++++....+++++|++++|.+..+.+++..+..+.+.+.+|+.|+++||+++|+||||++++.+.
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999878
Q ss_pred HHHHHHHHHHhhccccccccCCC--CCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHH
Q 012666 109 ISIAVAVLLIGLSADIGWLLGDR--GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (458)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (458)
+..++++.++.++++....+.+. +.......+..+++..+..++.+...++..++++|.+|+++|.++.+.++.+.+.
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence 87888888877776653332221 1122233355566677778899999999999999999998764337999999999
Q ss_pred HHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccccc
Q 012666 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (458)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (458)
++|+++|+.++++..+...+|+.....++..+.+.+..|++.+++.+++.++..+..||.+..++++.++++ .++.++
T Consensus 162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~--~~~~~~ 239 (477)
T TIGR01301 162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE--AAPPSK 239 (477)
T ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh--cccccc
Confidence 999999999999865555566665554555556899999999999999999999999997653322211111 111111
Q ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHH
Q 012666 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (458)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (458)
.+.++.++++++.+++.||.+|.+++++++.|++++++..|.++|+++++|+.++.....|+.|...+.++++.+++...
T Consensus 240 ~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~ 319 (477)
T TIGR01301 240 HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG 319 (477)
T ss_pred cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 12345678999999999999999999999999999999999999999999999888778899998999999999999988
Q ss_pred HHHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccCCC---CCCCchHHHHHHHHHHHHhhHHHHHhh
Q 012666 347 ITSVLMEKLCRKWGA-GFIWGISNILMALCFLAMLILYYVAIHM-DYRGH---DLPPNGIVIAALIIFTILGGPLAITYS 421 (458)
Q Consensus 347 ~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (458)
+.+++..++.+|+|+ |++...+.++.++++....+.+..+.+. +++++ ..|.....+..++.+.+.|+.++..++
T Consensus 320 i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~s 399 (477)
T TIGR01301 320 ITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYS 399 (477)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999985 6777899999999999888776432211 11111 122222347788899999999999999
Q ss_pred chhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 422 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+||+++++..+++.+++|.++|+.|++.+++|++.+
T Consensus 400 iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~s 435 (477)
T TIGR01301 400 IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVS 435 (477)
T ss_pred HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHH
Confidence 999999999997668889999999999999999875
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=269.87 Aligned_cols=418 Identities=56% Similarity=0.989 Sum_probs=314.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
++++.++...++.++++.....++++|++++|++..+.+.++.+..+.+.+.+|+.|..+||+++|+||||+++..+...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 77888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCCC--CCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
..+++.++.++.+++..++++.. .......+.+++..+..+.....+.++.+++.|+..++++.+ +++++...+..+
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~-~Ans~f~~f~av 190 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT-RANSVFSFFMAV 190 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh-ccchhHHHHHHh
Confidence 99999999999998887776543 345677888899999999999999999999999998888872 299999999999
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccch
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (458)
|+.+|..++++..+...+|+.....+...+...+..+.....+..+..........|+|...+. .+.+....
T Consensus 191 GnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~--------~~~~~~~~ 262 (498)
T KOG0637|consen 191 GNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKG--------TTARSKSS 262 (498)
T ss_pred cceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCc--------cccccccc
Confidence 9999999998877766666554332222222222222222211111111111111111111110 00111112
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccc------cccccchhHHHHHHHHH
Q 012666 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQ------NYATGVRMGALGLMLNS 342 (458)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 342 (458)
+.....+....++++|+++|.+++...+.|++++++..|.++|+++++|++|+.... .|+.|...+.+++++++
T Consensus 263 ~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins 342 (498)
T KOG0637|consen 263 KLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNS 342 (498)
T ss_pred CcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHH
Confidence 233444677788999999999999999999999999999999999999999998875 79999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHH--HHHHHHHHHHHHHHHHhh-hcccCC-CCCCCchHHHHHHHHHHHHhhHHHH
Q 012666 343 VVLGITSVLMEKLCRKWGAGFIWGISN--ILMALCFLAMLILYYVAI-HMDYRG-HDLPPNGIVIAALIIFTILGGPLAI 418 (458)
Q Consensus 343 ~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (458)
+...+.+....++.||+|-|+.+..+. +..+.++..+....+... +....+ ...+.....+.+...+...|+-++.
T Consensus 343 ~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~ 422 (498)
T KOG0637|consen 343 IVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAI 422 (498)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCcccc
Confidence 999999999999999999544443333 333444444333322221 111122 1123333445666777777888888
Q ss_pred HhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 419 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.+.++++..+.....+++.+|...|+.|+...++|++.+
T Consensus 423 t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs 461 (498)
T KOG0637|consen 423 TFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVS 461 (498)
T ss_pred ccccccccccccccCccCCCCceeeeeeeeeeehhheee
Confidence 888888888877777778889999999999999999875
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=235.58 Aligned_cols=346 Identities=19% Similarity=0.179 Sum_probs=271.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchh
Q 012666 24 ARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPF 103 (458)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~ 103 (458)
.+++..+..++.+.+..|............+|++.+++|+|..+.|++.++|.++..++.|+...+.| |+.||+.+
T Consensus 6 ~~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~----r~~Rr~lL 81 (394)
T COG2814 6 TARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTG----RLERRRLL 81 (394)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccchHHHH
Confidence 34455677788888888888888999999999999999999999999999999999999999999999 99998887
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHH
Q 012666 104 IVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (458)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (458)
+. ...+.+++-++..+++|+ +.++++|.+.++..+..++...++..|+.|+++|+ ++.++..
T Consensus 82 l~-~l~lFi~~n~l~alAp~f---------------~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~--~Aiaiv~ 143 (394)
T COG2814 82 LG-LLALFIVSNLLSALAPSF---------------AVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG--RALALVF 143 (394)
T ss_pred HH-HHHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh--hHHHHHH
Confidence 77 666677777888899998 99999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc
Q 012666 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (458)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (458)
.+..++.++|..+|.++.... |||..|+..+.+.+++.+..+..+| |++..++
T Consensus 144 ~G~tlA~v~GvPLGt~ig~~~---------------GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~---------- 196 (394)
T COG2814 144 TGLTLATVLGVPLGTFLGQLF---------------GWRATFLAIAVLALLALLLLWKLLP--PSEISGS---------- 196 (394)
T ss_pred HHHHHHHHHhccHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC----------
Confidence 999999999999998865544 9999999999999999999999998 2111111
Q ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHH
Q 012666 264 QSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (458)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
++...++..+.+|+ +..+...+..++...+.+..++|..+++. ++.+.+. +...+.++.+++
T Consensus 197 -----~~~~~~~~~~~l~~--p~v~~~l~~t~l~~~g~F~~ftYi~P~L~-~v~g~s~----------~~vs~~Ll~~Gv 258 (394)
T COG2814 197 -----LPGPLRTLLRLLRR--PGVLLGLLATFLFMTGHFALYTYIRPFLE-SVAGFSV----------SAVSLVLLAFGI 258 (394)
T ss_pred -----CCcchhHHHHHhcC--chHHHHHHHHHHHHcchhhhHHhHHHHHH-HccCCCH----------hHHHHHHHHHHH
Confidence 11223455677888 88999999999999999999999999985 4433322 223456667899
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhch
Q 012666 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (458)
Q Consensus 344 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (458)
+.+++++++|++.|| +.|+.+.....+.++.++.+.+.. . +.+...+...+.|++........
T Consensus 259 ~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~--------------~--~~~~~~~~~~~wg~a~~~~~~~~ 321 (394)
T COG2814 259 AGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG--------------A--SPALALALLFLWGFAFSPALQGL 321 (394)
T ss_pred HHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc--------------c--hHHHHHHHHHHHHHHhhhhhhHH
Confidence 999999999999999 899999888888888888777663 2 33445555555565555444444
Q ss_pred hHhHHhhhcccccccchhhhH----HHHHHHhhhhhc
Q 012666 424 YALVSIRTESLGLGQGLSLGV----LNLAIVIPQVSS 456 (458)
Q Consensus 424 ~~~~~~~~~~~~~~~g~~~g~----~~~~~~~~~~i~ 456 (458)
....++..| +.++.+.++ +|+.+.+|..++
T Consensus 322 ~~~~a~~~p---~~~~~a~sl~~aa~nlgia~GA~lG 355 (394)
T COG2814 322 QTRLARLAP---DAADLAGSLNVAAFNLGIALGAALG 355 (394)
T ss_pred HHHhcccCC---CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333 455555555 455555544443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-28 Score=223.72 Aligned_cols=375 Identities=16% Similarity=0.233 Sum_probs=283.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcch
Q 012666 24 ARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRP 102 (458)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~ 102 (458)
...+.+.++.+..+...++.++.+.....++..|. +..|+++..+|.+..+.-+..++..|+.|.++||+++|+||||+
T Consensus 5 ~~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP 84 (467)
T COG2211 5 SSKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRP 84 (467)
T ss_pred ccCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccH
Confidence 34578889999999999999888888888888876 77999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccc-ccchhhhhhHH
Q 012666 103 FIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAY 181 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~ 181 (458)
+++.+.+-.++...+.+.+++. +.........+...+.+++++....+..++.+|++++ ++|. +..++
T Consensus 85 ~lL~g~ip~~i~~~l~F~~p~~---------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~--~l~s~ 153 (467)
T COG2211 85 WLLWGAIPFAIVAVLLFITPDF---------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERA--SLTSW 153 (467)
T ss_pred HHHHHhHHHHHHHHHHHcCCCc---------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHH--HHHHH
Confidence 9998877777777777676653 2234446667778888999999999999999999975 5666 78999
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccc-cccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc
Q 012666 182 FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNV-DCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 260 (458)
Q Consensus 182 ~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 260 (458)
...+.++|..+...+... +....++. ...+|+..-.+.+++..+..+++++..+|+..+..+.++
T Consensus 154 R~~~~~~g~~l~~~~~~p---------lv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~----- 219 (467)
T COG2211 154 RMVFASLGGLLVAVLFPP---------LVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT----- 219 (467)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-----
Confidence 999999987776665321 11111221 245888888888888888888888889988763332210
Q ss_pred ccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHH
Q 012666 261 GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML 340 (458)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
..+++...++...++| |+++.+++..++.+.+..........|.. ...+.+. ......+..
T Consensus 220 ------~~~~~~~~~~~~~~~N--rp~~~~l~~~l~~~~~~~i~~s~~~yy~~-y~lg~~~----------l~~~~~~~~ 280 (467)
T COG2211 220 ------GVKLKLKDSFLLIFKN--RPLLLLLLMNLLLFIAFNIRGSIMVYYVT-YVLGDPE----------LFAYLLLLA 280 (467)
T ss_pred ------cccccHHHHHHHHHcc--chHHHHHHHHHHHHHHHHHHhhhhheeEE-EEcCChH----------HHHHHHHHH
Confidence 0011222233445667 78888888777777666555544444442 2222111 122234444
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHh
Q 012666 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (458)
Q Consensus 341 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (458)
.....+++.++.+++.+|+|+|+++.++.++.+++.+++.+.+ ++ +.+..++..++.+++.+...
T Consensus 281 ~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-------------~~--~~~l~~~~~~i~~~g~~~~~ 345 (467)
T COG2211 281 SGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-------------AG--SVVLIVVALIIAGVGTGIAN 345 (467)
T ss_pred HHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-------------Cc--chHHHHHHHHHHHHHhhccc
Confidence 5555666689999999999999999999999999999888873 11 45666777788899999999
Q ss_pred hchhHhHHhhhccc-----ccccchhhhHHHHHHHhhhhhcC
Q 012666 421 SVPYALVSIRTESL-----GLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 421 ~~~~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+.++++++|.++.+ +|..|...|.++++..+|+.+++
T Consensus 346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~ 387 (467)
T COG2211 346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG 387 (467)
T ss_pred cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999998863 47789999999999999998875
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=220.93 Aligned_cols=342 Identities=14% Similarity=0.123 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccccc
Q 012666 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (458)
Q Consensus 49 ~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (458)
......|.+.++.++|.+|+|++.+.+.+.+.++..+.|.++| |.+.|+.+-. +.++.++..++++++++.
T Consensus 47 nF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD----r~npr~fm~~-gLilsai~nil~Gfs~s~---- 117 (448)
T COG2271 47 NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSD----RSNPRYFMAF-GLILSAIVNILFGFSPSL---- 117 (448)
T ss_pred hHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc----cCCCceeehH-HHHHHHHHHHHHhhhhHH----
Confidence 3445667778899999999999999999999999999999999 9999776555 777788888888887776
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhh--ccccccccc
Q 012666 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG--SFSGWFKIL 206 (458)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~--~~~~~~~~~ 206 (458)
..+.+...+.|...+...|++...+..++|+++|| +..++.+...++|..+.+.+. +.....
T Consensus 118 -----------~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG--~~~siWn~shNiGGal~~~~~~la~~~~~--- 181 (448)
T COG2271 118 -----------FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERG--TWWSIWNTSHNIGGALAPLVALLAFFAFH--- 181 (448)
T ss_pred -----------HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccC--ceEEEehhhhhcccchHHHHHHHHHHHhc---
Confidence 88888999999999999999999999999999999 999999999999999988886 432211
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCC----CCCCccc-cccccchHHHHHH-HHHHHH
Q 012666 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQS----APFSEEG-HEQSSDVHEAFLW-ELFGTF 280 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 280 (458)
.+||..|++.+++.++..++.++..+|+|+...-+. +++..+. +++++.+.....+ -....+
T Consensus 182 ------------~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL 249 (448)
T COG2271 182 ------------GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVL 249 (448)
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHH
Confidence 289999999999999999999999999987543221 1111111 1111111011111 123456
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 012666 281 RYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW- 359 (458)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~- 359 (458)
+| |..|.+++..++....-+.+..+.|.|+.+ ..+.+. ..+.....++-++++++++++|+++||+
T Consensus 250 ~N--k~iW~la~a~vfvYivR~gi~dW~p~YL~e-~k~~s~----------~~a~~a~~lfE~agl~G~Ll~GwlSDklf 316 (448)
T COG2271 250 KN--KLIWLLALANVFVYVVRYGINDWGPLYLSE-VKGFSL----------VKANWAISLFEVAGLPGTLLAGWLSDKLF 316 (448)
T ss_pred cC--hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hcCCCH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 67 999999999999999999999999999975 333222 2334556667899999999999999997
Q ss_pred -cChhhHH-HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccc
Q 012666 360 -GAGFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (458)
Q Consensus 360 -g~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
|||.... +.++...++++.+... |+. +.+...+++...|+..-...-+.-....|..|. +.
T Consensus 317 kgrR~p~~~i~~~~i~~~~~~~w~~--------------~~~-~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK--~A 379 (448)
T COG2271 317 KGRRGPMALIFMLLITASLVLYWLA--------------PNG-SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK--KA 379 (448)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcC--------------CCc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH--hh
Confidence 6776664 4444555555555544 332 445566666666654333333444567788888 89
Q ss_pred cchhhhHHHHHHHh-hhhhcC
Q 012666 438 QGLSLGVLNLAIVI-PQVSSC 457 (458)
Q Consensus 438 ~g~~~g~~~~~~~~-~~~i~~ 457 (458)
.|++.|..+++..+ |...++
T Consensus 380 aGtA~Gf~Glf~Yl~Ga~~a~ 400 (448)
T COG2271 380 AGTATGFVGLFAYLIGAALAG 400 (448)
T ss_pred ccchhchhhhHHHHhhHHhcC
Confidence 99999999999999 665543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-28 Score=228.90 Aligned_cols=337 Identities=15% Similarity=0.098 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
...+.+....+..........+.+|.+.+++|.|+.+.+++.+.+.++..+++++.|.++| |+||||.+.. +...
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~ 83 (390)
T PRK03545 9 LRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTS----NVERRKLLIG-LFVL 83 (390)
T ss_pred HHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCChHHHHHH-HHHH
Confidence 3444444444443344445556788889999999999999999999999999999999999 9999998877 4555
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
..++.+...+++++ +.+++.+.+.|++.+...+...+++.|++|+++|+ +++++.....++|.
T Consensus 84 ~~~~~~~~~~~~~~---------------~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~g~~~~~~~~g~ 146 (390)
T PRK03545 84 FIASHVLSALAWNF---------------TVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKA--QALSLLATGTALAM 146 (390)
T ss_pred HHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh--hHHHHHHHHHHHHH
Confidence 55666666677776 78888999999998888888899999999999999 99999999999999
Q ss_pred HHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHH
Q 012666 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 270 (458)
Q Consensus 191 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
.+++.+++...... +||+.|++.+++.++..+......||.+++++
T Consensus 147 ~ig~~l~~~l~~~~---------------gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~------------------- 192 (390)
T PRK03545 147 VLGLPLGRVIGQYL---------------GWRTTFLAIGGGALITLLLLIKLLPLLPSEHS------------------- 192 (390)
T ss_pred HHHhhHHHHHHHHh---------------cHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc-------------------
Confidence 99999887643222 89999999988777766666565665432110
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHH
Q 012666 271 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (458)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (458)
+..++..+.+|+ +.++......++..........+.++++.+ .++.++.. ........+++.+++++
T Consensus 193 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~~~----------~~~~~~~~~~~~~~g~~ 259 (390)
T PRK03545 193 GSLKSLPLLFRR--PALVSLYLLTVVVVTAHFTAYSYIEPFVQQ-VAGLSENF----------ATLLLLLFGGAGIIGSV 259 (390)
T ss_pred chHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccH----------HHHHHHHHHHHHHHHHH
Confidence 011234456666 666655555554444444445566666632 23322211 12223345677889999
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhh
Q 012666 351 LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (458)
Q Consensus 351 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (458)
+.+++.||+++|... .+..+..++...+.... + +.+..++...+.|++.+...+...+.+.+.
T Consensus 260 ~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~-------------~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 322 (390)
T PRK03545 260 LFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA-------------N---SEWHLSVLSIFWGIAIMCIGLAMQVKVLKL 322 (390)
T ss_pred HHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh-------------c---hHHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 999999999987654 44444444443332221 1 345556677777877765555566677776
Q ss_pred hcccccccchhhhHHHHHHHhhhhhc
Q 012666 431 TESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 431 ~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
.| +.+|++.|+++....+|+.++
T Consensus 323 ~~---~~~~~~~g~~~~~~~~g~~~G 345 (390)
T PRK03545 323 AP---DATDVAMALFSGIFNIGIGAG 345 (390)
T ss_pred CC---CcHHHHHHHHHHHHHHHHHHH
Confidence 55 456788887777776666554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-28 Score=234.11 Aligned_cols=359 Identities=15% Similarity=0.179 Sum_probs=251.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHH
Q 012666 38 SVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (458)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~ 116 (458)
...++.++.+.....+++++. +++|+++.++|++.++..+.+++.+|+.|+++||+++|+||||++++.+.+...++..
T Consensus 6 ~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~ 85 (437)
T TIGR00792 6 FGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLV 85 (437)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHH
Confidence 344556666777777777776 6799999999999999999999999999999999999999999988877777776666
Q ss_pred HHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcc-cccchhhhhhHHHHHHHHHHHHHHHh
Q 012666 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFSLFMAVGNILGYA 195 (458)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (458)
.+...++. . .......+++...+.+++.+....+..++..|+.+ +++|+ +..++...+..+|..+++.
T Consensus 86 ~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~--~~~~~~~~~~~~g~~l~~~ 154 (437)
T TIGR00792 86 LLFTTPDF--------S-ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERE--SLSTFRRFGATLGGLLVAV 154 (437)
T ss_pred HHHhCCCC--------C-cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 66555543 1 11234566667777888888888899999999985 57788 8999998888888877766
Q ss_pred hhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHH
Q 012666 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (458)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (458)
+.+.... .... .....+|++.+.+.+++..+..++..+..||++++.+++ ++++ .+..+.
T Consensus 155 ~~~~l~~-----~~~~---~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~-------~~~~-----~~~~~~ 214 (437)
T TIGR00792 155 IVLPLVS-----YFGG---GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN-------IEKK-----LSLKQI 214 (437)
T ss_pred HHHHHHH-----HhCC---CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc-------cccC-----CCHHHH
Confidence 5433110 0000 011238999999998888887777777788765221110 0000 011223
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 012666 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (458)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 355 (458)
+++.+++ |+++.+++..++.+.+......+.+.|. +..++ ++ ...........+..+++.++.+++
T Consensus 215 ~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~----------~~~~~~~~~~~i~~ii~~~~~~~l 280 (437)
T TIGR00792 215 FKALFKN--DQLLILCLAYLFYNLAFNIKNGVQVYYF-TYVLG-DP----------ELFSYMGSIAIVAGLIGVLLFPRL 280 (437)
T ss_pred HHHHhCC--HHHHHHHHHHHHHHHHHHHHcchhheeE-eeecC-Ch----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566 7888877777777766555444444333 22222 11 111122233567778889999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccc-
Q 012666 356 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL- 434 (458)
Q Consensus 356 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 434 (458)
.||+|+|+.+..+..+.+++.+.+.+.. + +.+...+...+.|++.+...+..+++++|..|.+
T Consensus 281 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (437)
T TIGR00792 281 VKKFGRKILFAGGILLMVLGYLIFFFAG--------------S--NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGE 344 (437)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHcc--------------h--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999999999888888777776665541 1 3445566677788888888888999999988742
Q ss_pred ----ccccchhhhHHHHHHHhhhhhcC
Q 012666 435 ----GLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 435 ----~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+|.+|.+.|+.+++..+++.++.
T Consensus 345 ~~~~~~~~G~~~~~~~~~~~~g~~lg~ 371 (437)
T TIGR00792 345 WKTGVRAEGLVYSVRTFVRKLGQALAG 371 (437)
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999887763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-27 Score=229.72 Aligned_cols=369 Identities=14% Similarity=0.117 Sum_probs=251.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhH
Q 012666 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (458)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~ 104 (458)
.+.+.++.+..++..++.++.+.....+++.|. +.+|+|+.++|.+..+..+.+++..|+.|+++||+++|+||||+++
T Consensus 4 ~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~i 83 (444)
T PRK09669 4 SQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYL 83 (444)
T ss_pred CcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhH
Confidence 356778888888877777776666677777766 7799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcc-cccchhhhhhHHHH
Q 012666 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFS 183 (458)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~ 183 (458)
+.+.+...++..+....|+. +.....+++.+...+.+.+.+....+..++.+|+.+ +++|. +..++..
T Consensus 84 l~~~~~~~i~~~l~f~~p~~---------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~--~l~~~r~ 152 (444)
T PRK09669 84 LWFAIPFGVVCLLTFYTPDF---------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERH--SLQSWRF 152 (444)
T ss_pred HHHHHHHHHHHHHHHhCCCC---------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHH--HHHHHHH
Confidence 87766666666555555442 112334555666667777788888899999999985 46677 7888888
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc
Q 012666 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (458)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (458)
....+|..+++.+...+.. .++. +....+|+..+.+.+++..++.+++++..||++.+++++
T Consensus 153 ~~~~~G~~i~~~~~~pl~~--~~~~------~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~---------- 214 (444)
T PRK09669 153 ALSFIGGLIVSVIALPLVD--ILGK------GDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDN---------- 214 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhCC------CchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcC----------
Confidence 8888888887765322100 0000 011237888888888777777666667777753321100
Q ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHH
Q 012666 264 QSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (458)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.+..+++++.++| |+++.++...++...+..........|. +...+ ++ +..........+
T Consensus 215 -----~~~~~~~~~~~~~n--~~~~~l~~~~~~~~~~~~~~~~~~~y~~-~~~~~-~~----------~~~~~~~~~~~i 275 (444)
T PRK09669 215 -----SSSVWKDLKLLLGN--SQWRIMFIFNVVLLTAVVTRGGATLYYV-NYVLL-RP----------DLATLFLVTGMI 275 (444)
T ss_pred -----CCCHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHhhhhheee-eeecC-CH----------HHHHHHHHHHHH
Confidence 01123455566677 7888877766666555443333232222 22221 00 111122223456
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhch
Q 012666 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (458)
Q Consensus 344 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (458)
..+++.++.+++.||+|+|+.+..+.++.+++.+.+.+.. ++ +.+..++..++.|++.+...+..
T Consensus 276 ~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~i~g~~~~~~~~~~ 340 (444)
T PRK09669 276 AGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP-------------PS--NVWLIFALNILFNFIQNLTTPLQ 340 (444)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC-------------cc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788999999999999999887766555444333331 11 45556667778899999999999
Q ss_pred hHhHHhhhccc-----ccccchhhhHHHHHHHhhhhhcC
Q 012666 424 YALVSIRTESL-----GLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 424 ~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+++++|.+|.+ +|..|...|..+++..+|+.+++
T Consensus 341 ~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~ 379 (444)
T PRK09669 341 WSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGG 379 (444)
T ss_pred HHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHH
Confidence 99999998742 25568889999888888887763
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=229.24 Aligned_cols=342 Identities=16% Similarity=0.078 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHH
Q 012666 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (458)
.....+...+.........|.+.+++|.++.+.+++.+...++..++.++.|+++| |+||||.++.... ...++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~~~-~~~~~~ 94 (406)
T PRK11551 20 CFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLAD----RIGRKRILIVSVA-LFGLFS 94 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHHHHH-HHHHHH
Confidence 33344444555666677788888999999999999999999999999999999999 9999999887444 444444
Q ss_pred HHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHh
Q 012666 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (458)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (458)
+...+.+++ +.+++.+.+.|++.+...+...+++.|++|+++|+ +++++......+|..+++.
T Consensus 95 ~~~~~~~~~---------------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~ 157 (406)
T PRK11551 95 LATAQAWDF---------------PSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRG--TAVSLMYCGVPFGGALASV 157 (406)
T ss_pred HHHHHhccH---------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 555555555 77788999999999988899999999999999999 9999999999999999988
Q ss_pred hhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHH
Q 012666 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (458)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (458)
+++..... .+|++.|++.+++.++..++..+++||+++..+++.+ + + ++++..+.
T Consensus 158 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~---~-----~~~~~~~~ 212 (406)
T PRK11551 158 IGVLAAGD---------------AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA--G---K-----QRAPVLRA 212 (406)
T ss_pred HHHHHccc---------------cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc--c---h-----hhhhhHHH
Confidence 87553221 2799999988776666666666677887543222100 0 0 01111111
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 012666 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (458)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 355 (458)
..+..+. +..+.+....++..........+.+.++.+ .+.++.. .........++.+++.++.|++
T Consensus 213 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~~----------~~~~~~~~~~~~~~~~~~~g~l 278 (406)
T PRK11551 213 LFGEGRA--TATLLLWISYFFTLIVLYFLLNWLPSLLVG--QGLSRSQ----------AGLVQIAFNIGGALGSLLIGAL 278 (406)
T ss_pred Hhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCChhh----------hhHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 223333333334334444555566776642 2222211 1223334567788999999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccc
Q 012666 356 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (458)
Q Consensus 356 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
.||+|+|+.+..+.....++++++...+ +.+...+...+.|++.+...+..+++..|.+|+
T Consensus 279 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-- 339 (406)
T PRK11551 279 MDRLRPRRVVLLIYAGILASLAALAAAP-----------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT-- 339 (406)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcC-----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch--
Confidence 9999999988876666666555444431 234455566677777777778888999999999
Q ss_pred cccchhhhHHHHHHHhhhhhcC
Q 012666 436 LGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+.+|+..|+.+....++..+++
T Consensus 340 ~~~g~~~g~~~~~~~~g~~~g~ 361 (406)
T PRK11551 340 QVRGTGVGAAVAVGRLGSMAGP 361 (406)
T ss_pred hhhhhhhhHHHHhhhHHHHHHh
Confidence 8899999999998888877653
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-28 Score=235.02 Aligned_cols=361 Identities=13% Similarity=0.051 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
..+..++...+...+........+|.+.+++|.+..+.+|+.+.+.++..+..++.|+++| |+|||+.++. +...
T Consensus 6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D----~~Grk~~l~~-~~~~ 80 (495)
T PRK14995 6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD----RIGFKRLLML-GGTL 80 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHH-HHHH
Confidence 3445566666667778888888999999999999999999999999999999999999999 9999998877 5455
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhc-ccccchhhhhhHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLT-GKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~g 189 (458)
..++.+....+++. +.++++|.++|++.+...+.....+.+.+ |+++|+ +++++......+|
T Consensus 81 ~~~~~~~~~~a~~~---------------~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~--~~~g~~~~~~~~g 143 (495)
T PRK14995 81 FGLASLAAAFSPTA---------------SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN--MALGVWAAVGSGG 143 (495)
T ss_pred HHHHHHHHHHcCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHH
Confidence 55666666677776 88889999999999988887777777765 678899 9999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc----------
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE---------- 259 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---------- 259 (458)
..+||.+++.+.... +||+.|++...+.++..++..+.+||+++++.++.+....
T Consensus 144 ~~~gp~lgg~l~~~~---------------gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l 208 (495)
T PRK14995 144 AAFGPLVGGILLEHF---------------YWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLL 208 (495)
T ss_pred HHHHHHHHHHhhccC---------------ChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHH
Confidence 999999988754332 8999999988887777777777778765332211110000
Q ss_pred ----cccccccchHHH---------------HHHHH--------HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012666 260 ----EGHEQSSDVHEA---------------FLWEL--------FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWM 312 (458)
Q Consensus 260 ----~~~~~~~~~~~~---------------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
++..+....... ..++. .+.+|+ |.++...+..++...+......+.+.|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (495)
T PRK14995 209 VYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTH--RIILSGVVMAMTAMITLVGFELLMAQEL 286 (495)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCC--cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 00111 234555 5666666666666666666666777777
Q ss_pred hceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 012666 313 GREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR 392 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (458)
+ ..++.++.. ....+....+...++.++.|++.||+|+|+.+..+.++.+++..++....
T Consensus 287 q-~v~g~s~~~----------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~--------- 346 (495)
T PRK14995 287 Q-FVHGLSPLE----------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD--------- 346 (495)
T ss_pred H-HHcCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc---------
Confidence 3 334433322 22334446777888999999999999999988888888777776655442
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 393 GHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
... +.+......++.|++.+...+.....+.+.+|+ +++|.+.++.|+...+|+.++.
T Consensus 347 ----~~~-~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~lG~~~G~ 404 (495)
T PRK14995 347 ----FST-QQWQAWGLMALLGFSAASALLASTSAIMAAAPP--EKAAAAGAIETMAYELGAGLGI 404 (495)
T ss_pred ----CCC-chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH--HhcchHHHHHHHHHHHHHHHHH
Confidence 111 234455677888999998888888888898998 8899999999999999887653
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-28 Score=231.84 Aligned_cols=367 Identities=10% Similarity=-0.064 Sum_probs=239.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
.++..+...+.++...+.........|.+.+++|.+..+.+++.+++.++..+++++.|+++| |+||||.+.. +.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~G~r~~~~~-~~ 80 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA----IIGARRWIAG-IM 80 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH----HhChHHHHHH-HH
Confidence 344444455555554556666666777777999999999999999999999999999999999 9999998776 45
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
+...++.....++++. +.+++.|++.|++.+...+....++.|++|+++|+ +++++......+
T Consensus 81 ~~~~~~~~~~~~~~~~---------------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg--~~~~~~~~~~~~ 143 (412)
T TIGR02332 81 VLWGIASTATMFATGP---------------ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRA--RANALFMIAMPV 143 (412)
T ss_pred HHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHH
Confidence 5555556666677776 78889999999999998888889999999999999 999999999999
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCC---CCCCC--------C
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH---DQSAP--------F 257 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~--------~ 257 (458)
|..+++.+++...... ... ...+||+.|.+.++..++..++.++++||+|++.+ +++++ +
T Consensus 144 g~~~~~~~~~~l~~~~---~~~------~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~ 214 (412)
T TIGR02332 144 TMALGLILSGYILALD---GLM------ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDND 214 (412)
T ss_pred HHHHHHHHHHHHHhCC---CCC------CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhc
Confidence 9999999877532100 000 01289999999888877777777778888875421 10000 0
Q ss_pred Cc--cccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHH
Q 012666 258 SE--EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGA 335 (458)
Q Consensus 258 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (458)
+. ++.++..++++...++..+.+++ +.+|...+..++.......+..|.|.++.+...+.++. ...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~----------~~~ 282 (412)
T TIGR02332 215 QLTLEQPEGAFAHAAMPQRSMLREIFT--PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNI----------MIG 282 (412)
T ss_pred cccccccccccccccccHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----------HhH
Confidence 00 00000000000011122233344 56777777777777777788888999885311121111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhh
Q 012666 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFI-WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414 (458)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (458)
.......++.+++.++.|+++||+++|+. .....++..+++++ .... +. . ........+.+.
T Consensus 283 ~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~-~~~~-------------~~--~-~~~~~~~~~~~~ 345 (412)
T TIGR02332 283 LLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL-ASAT-------------DH--N-LIQLLGIIMASM 345 (412)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH-HHhc-------------CC--H-HHHHHHHHHHHH
Confidence 22344577788899999999999997774 33344344433322 2111 11 1 111222222233
Q ss_pred HHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 415 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+.....+..+....|..|+ +.+|++.|+.|....+|+++++
T Consensus 346 g~~~~~~~~~~~~~~~~~~--~~~~~a~g~~~~~~~~g~~~~p 386 (412)
T TIGR02332 346 GSFSAMAIFWTTPDQSISL--QARAIAIAVINATGNIGSALSP 386 (412)
T ss_pred HhhhhhhHHHhhcccccch--HHHHHHHHHHHHhhhhhhhhhh
Confidence 3322223334455667787 8899999999999999887764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=225.34 Aligned_cols=346 Identities=16% Similarity=0.096 Sum_probs=243.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHH
Q 012666 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (458)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (458)
..+...++.......+|.+..+.+.++.+.+++.++..++..+.+++.|+++| |+||||.++....+..+. ....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~~~~~~~~~~~~-~~~~ 81 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALAD----RYDRKKVMIGADLIRAVL-VAVL 81 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHH----hhchhHHHHHHHHHHHHH-HHHH
Confidence 34445566777778889999999999999999999999999999999999999 999999888755443333 3333
Q ss_pred hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhc
Q 012666 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (458)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (458)
.+.+.. .....+.+++.+.+.|++.+...+...+++.|++|+++|+ +++++.+....+|..+++.+++
T Consensus 82 ~~~~~~----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~~ 149 (365)
T TIGR00900 82 PFVALL----------GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLT--QANSLSQAVRSLFYIVGPGIGG 149 (365)
T ss_pred HHHHHc----------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHhHHHHHHHHHHHHHHHHHH
Confidence 333310 0012377888899999999999999999999999999999 9999999999999999999987
Q ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhcc-ccCCCCCCCCCCCCCccccccccchHHHHHHHHH
Q 012666 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA-HEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 277 (458)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (458)
...... +|++.|++.++..++..+...... ||+++++ ++ + .+ ++..++..+..+
T Consensus 150 ~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~--~~---~~~~~~~~~~~~ 204 (365)
T TIGR00900 150 LMYATL---------------GIKWAIWVDAVGFAISALLIVSVRIPELAASE-IQ----A--LS---NAVLRDTREGIK 204 (365)
T ss_pred HHHHHh---------------hHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-cc----c--cc---hhHHHHHHhHHH
Confidence 743222 899999887766555544433322 2221111 00 0 00 001112223334
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012666 278 GTFRYFSGTIWIILIVTALTWLGWFPFL-LFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (458)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 356 (458)
..+++ |.++..+...++......... .+.+.+.. +.++.++. ..........++.+++.++.+++.
T Consensus 205 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~ 271 (365)
T TIGR00900 205 FVLKN--PLLRTLLLLALLFNLVFAPAIVALFPYVQS-KYLGRGST----------HYGWVLAAFGLGALLGALLLGLLG 271 (365)
T ss_pred HHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhCCchH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 677776666666655554444 45555553 22332221 112233345677788899999999
Q ss_pred HhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccccc
Q 012666 357 RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (458)
Q Consensus 357 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
||.+||+.+..+..+.+++...+.+.. . +.+...+..++.|++.+...+...+++.|.+|+ +
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~ 333 (365)
T TIGR00900 272 RYFKRMALMTGAIFVIGLAILVVGLTP--------------P--NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA--E 333 (365)
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHhhc--------------h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--H
Confidence 999999988887777777766665552 1 245566778888999998888889999999999 8
Q ss_pred ccchhhhHHHHHHHhhhhhcC
Q 012666 437 GQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 437 ~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.+|+..|+.+....+++.+++
T Consensus 334 ~~g~~~~~~~~~~~~~~~~g~ 354 (365)
T TIGR00900 334 LLGRVFGAQFSLSHAAWPLGL 354 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998887653
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=235.71 Aligned_cols=359 Identities=23% Similarity=0.305 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHH
Q 012666 38 SVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (458)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~ 116 (458)
...++.++.+.....++++|. +.+|+++...|.+..+..+.+++..|+.|.++||+++|+||||++++.+.+...++..
T Consensus 8 ~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~ 87 (428)
T PF13347_consen 8 IGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFF 87 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHH
Confidence 344556666666666666655 7789999999999999999999999999999999999999999999989888888888
Q ss_pred HHhhc-cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccc-ccchhhhhhHHHHHHHHHHHHHHH
Q 012666 117 LIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFSLFMAVGNILGY 194 (458)
Q Consensus 117 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~g~~ig~ 194 (458)
+++.. |.- .+......++.+...+..++.+....+..++.+|+.++ ++|. +..+....+..+|.++..
T Consensus 88 llf~~~p~~--------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~--~l~~~~~~~~~~g~~l~~ 157 (428)
T PF13347_consen 88 LLFSPPPAG--------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERT--RLSSWRMIFSMIGSLLAS 157 (428)
T ss_pred Hhhccccch--------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhh--hHHHHHHHHHHHHHHHHH
Confidence 88655 311 12222334456677777899999999999999999985 5777 899999999999887666
Q ss_pred hhhccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHH
Q 012666 195 ATGSFSGWFKILPFTLTSACNVDC-ANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 273 (458)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (458)
.+.+.+. ...++... .+|++...+.+++..++.++..+..||++++.+++ +++.+..
T Consensus 158 ~~~~~l~---------~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~-------------~~~~~~~ 215 (428)
T PF13347_consen 158 FLAPILV---------SWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ-------------EKKISLR 215 (428)
T ss_pred HHhhhhh---------hhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccc-------------ccccccc
Confidence 6644321 11122222 27999999999999998888889999822211111 0011222
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012666 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (458)
+.+++.++| |+++.++...++.+.+......+.+.|.. .+.+.+. ..........+..+++.++.+
T Consensus 216 ~~~~~~~~n--r~~~~l~~~~~~~~~~~~~~~~~~~y~~~-~vl~~~~-----------~~~~~~~~~~~~~~v~~~~~~ 281 (428)
T PF13347_consen 216 DSLRSLFRN--RPFRILLLAFFLQWLAFALMNTFLPYYFT-YVLGNEG-----------LISIFMLIFFVASIVGSPLWG 281 (428)
T ss_pred cchhhhccc--chHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHhcCch-----------hhHHHHHHHHHHHHHHHHHHH
Confidence 344555666 78888888888887776665555554442 3222221 111223345677788899999
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcc
Q 012666 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (458)
Q Consensus 354 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (458)
+++||+|+|+.+..+..+.+++.+++.+.. +. +.+..++...+.|++.+.....++++.+|..+.
T Consensus 282 ~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~ 346 (428)
T PF13347_consen 282 RLSKRFGKKKVYIIGLLLAALGFLLLFFLG-------------PG--SPWLVLILFILAGIGYGAFFVIPWAMLADVIDY 346 (428)
T ss_pred HHHHHccceeehhhhHHHHHHHHHHHHHHH-------------hh--hHHHHHHHHHHhHhhhcccccccccccccchhh
Confidence 999999999999999999999998888774 21 577888899999999999999999999999986
Q ss_pred c-----ccccchhhhHHHHHHHhhhhhcC
Q 012666 434 L-----GLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 434 ~-----~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+ +|..|...|+.++...+++.+++
T Consensus 347 ~e~~tg~r~~g~~~s~~~~~~k~~~~la~ 375 (428)
T PF13347_consen 347 DEWKTGRRREGMYFSVNSFFIKIGQGLAG 375 (428)
T ss_pred HHHhcCCCchHHHHHhhhhhhHHHHHHHH
Confidence 4 36679999999999999988764
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-27 Score=227.29 Aligned_cols=375 Identities=14% Similarity=0.169 Sum_probs=254.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHH
Q 012666 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (458)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~ 105 (458)
+.+.++.+..++..++.++.+.....+++.|. +.+|+++..+|.+..+..+..++..|+.|+++||+++|+||||++++
T Consensus 2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il 81 (473)
T PRK10429 2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL 81 (473)
T ss_pred CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence 34567777788888888888888888888877 55799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhc-ccccchhhhhhHHHHH
Q 012666 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLT-GKDHRRTRVANAYFSL 184 (458)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~ 184 (458)
.+.+..++++.++...++. +....++++++...+.+++.+....+..++.+|+. ++++|. +..++...
T Consensus 82 ~g~i~~~i~~~llf~~p~~---------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~--~l~~~~~~ 150 (473)
T PRK10429 82 IGTLANSVVLFLLFSAHLF---------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRERE--QLVPYPRF 150 (473)
T ss_pred hhhHHHHHHHHHHHcCCCC---------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHH--HHHHHHHH
Confidence 8888777776666544432 11223455566666778889999999999999999 477788 88888777
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccc
Q 012666 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (458)
Q Consensus 185 ~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (458)
+.++|..+.+.+..... ..... .....+|+....+.+++..++.++.++..||++..+.++.+ +++
T Consensus 151 ~~~ig~~~~~~~~~~~~-----~~~g~---~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~-----~~~- 216 (473)
T PRK10429 151 FASLAGFVTAGFTLPFV-----NYVGG---GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSA-----EGS- 216 (473)
T ss_pred HHHHHHHHHHHHHHHHH-----HHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccc-----ccc-
Confidence 77777666554422100 00000 01112577777777777666666776767776432211100 000
Q ss_pred ccchHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHH
Q 012666 265 SSDVHEAFLWEL-FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (458)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.+ .++. +..++| |+++.++...++.+.+......+...|. +...+ +. ...........+
T Consensus 217 ----~~~-~~~~~~~~~~n--~~~~~ll~~~~~~~~~~~~~~~~~~y~~-~y~~~-~~----------~~~~~~~~~~~i 277 (473)
T PRK10429 217 ----HLT-LKDIVALIYKN--DQLSCLLGMALAYNIASNIINGFAIYYF-TYVIG-DA----------DLFPYYLSYAGA 277 (473)
T ss_pred ----CCC-HHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHhhheeeEE-EEECC-CH----------HHHHHHHHHHHH
Confidence 011 2222 334466 8888888777777766665555555443 22211 11 111122233456
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhch
Q 012666 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (458)
Q Consensus 344 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (458)
..+++.++.+++.||+|+|+.+..+..+..++.+.+...... + ..+.+..++..++.|++.+......
T Consensus 278 ~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~i~~~l~g~~~~~~~~~~ 345 (473)
T PRK10429 278 ANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA-----------A-PHNALLIVIAGILLNIGTALFWVLQ 345 (473)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-----------C-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999988877666655554432100 1 1134555666777888999888899
Q ss_pred hHhHHhhhccc-----ccccchhhhHHHHHHHhhhhhcC
Q 012666 424 YALVSIRTESL-----GLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 424 ~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+++++|.+|.+ +|..|..+|..+++..+++.+++
T Consensus 346 ~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~ 384 (473)
T PRK10429 346 VIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA 384 (473)
T ss_pred HHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence 99999998743 46678899999999998887764
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=221.33 Aligned_cols=326 Identities=13% Similarity=0.079 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcc
Q 012666 43 IQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (458)
Q Consensus 43 ~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (458)
.+..+..+.+.+|.+.+++|+|+.+.|++.+.+.+++.+++++.|+++| |+|||+.++. .....+.+.......+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~D----r~grr~~~~~-~~~~~~~~~~~~~~~~ 77 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLD----RAFKRWFLFG-SLATFAAAAGRLLDPF 77 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccchHHHHH-HHHHHHHHHHHHHHhc
Confidence 4567778888999999999999999999999999999999999999999 9998876543 4444434333222224
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccc
Q 012666 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 202 (458)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 202 (458)
++ ..+++.|++.|++.+. ..+....+.|++|+++|+ +++++......+|..+++.+++.+..
T Consensus 78 ~~---------------~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~--~a~~~~~~~~~lG~~l~~~~~~~l~~ 139 (368)
T TIGR00903 78 NY---------------EWLLACQLLAALGQPF-LLNAFAPAASQIREERRD--LVISLLSFAMYLGIIFALAAGLKIYT 139 (368)
T ss_pred cH---------------HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 7889999999999886 455666679999999999 99999999999999999988776433
Q ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhc
Q 012666 203 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRY 282 (458)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (458)
. .+||+.|.+.+++.++..++.++.+||+|+++.++ . + .++..+++++.+++
T Consensus 140 ~---------------~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~-------~-~-----~~~~~~~~~~ll~~ 191 (368)
T TIGR00903 140 A---------------GGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEG-------F-G-----FKDAVKEFGALAGR 191 (368)
T ss_pred c---------------cchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-------c-c-----hHHHHHHHHHHHcC
Confidence 2 29999999988888777777788889876542110 0 0 01112345667777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Q 012666 283 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA- 361 (458)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~- 361 (458)
|.+|.+.+..++....+..+..|.+.|+.+. +.+. ..+.. . .+....+.+..+++.||..|
T Consensus 192 --~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~--g~s~----------~~~~~-~---~l~~~~g~~g~~~~~d~~~r~ 253 (368)
T TIGR00903 192 --KDLWIIGAILGFGVALFDNLAIWLEAALRPA--GLED----------IAGDA-V---ALAILAGLIGVAVIPDRVARA 253 (368)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCh----------HHHHH-H---HHHHHHHHHHHHHhhHHhhhh
Confidence 8889998888888888888889999998532 2211 11111 1 12222233334677777654
Q ss_pred --hhhHHH-HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccccccc
Q 012666 362 --GFIWGI-SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (458)
Q Consensus 362 --r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (458)
|+.... ..++.++....+.... +.........+.++......+..+++.+|.+|+ +.+
T Consensus 254 ~~r~~~~~~~~~~~a~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--~~r 314 (368)
T TIGR00903 254 GLRSIYIRAAALLIAAFFLALAFEL-----------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK--ELH 314 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcc-----------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch--hhc
Confidence 333322 3333333333333221 122233444455555555666677899999999 899
Q ss_pred chhhhHHHHHHHhhhhhc
Q 012666 439 GLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 439 g~~~g~~~~~~~~~~~i~ 456 (458)
|++.|+.|....++..++
T Consensus 315 gt~~G~~~~~g~~~~~~~ 332 (368)
T TIGR00903 315 GKAAGAIGFTSRAISVAL 332 (368)
T ss_pred CcccchhhHHHHHHHHHH
Confidence 999999999888887554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=220.95 Aligned_cols=344 Identities=15% Similarity=0.137 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
+..+..+...+...++.....+.+|.+.+++|.++.+.+++.+++.++..+++++.|+++| |+||||.++. +...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~-~~~~ 79 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSD----RYGRRPVLLL-GLFI 79 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH----hcCChHHHHH-HHHH
Confidence 3344444444445566677777888889999999999999999999999999999999999 9999998877 4444
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
..++.+.....++. +.+++.+++.|++.+...+...+++.|++|+++|+ ++.++.+....+|.
T Consensus 80 ~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 142 (385)
T TIGR00710 80 FALSSLGLALSNNI---------------ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELS--RIYSILMPVLALAP 142 (385)
T ss_pred HHHHHHHHHHHccH---------------HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHH
Confidence 55555555566655 77788899999999999999999999999999999 99999999999999
Q ss_pred HHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHH
Q 012666 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 270 (458)
Q Consensus 191 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
.+++.+++...... +|++.|++.+++.++..+...+..||++++++++ +.+
T Consensus 143 ~~g~~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 193 (385)
T TIGR00710 143 AVAPLLGGYILVWL---------------SWHAIFAFLSLAGILLSALIFFILPETLPYEARI--------------QIS 193 (385)
T ss_pred HHHHHHHHHHHHHc---------------CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC--------------CHH
Confidence 99999887633222 8999999888777777666666667654322110 112
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHH
Q 012666 271 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (458)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (458)
+..++.++.+++ ++++...+...+..........+.+.++. +.++.++. ..........+..+++.+
T Consensus 194 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~----------~~g~~~~~~~~~~~~~~~ 260 (385)
T TIGR00710 194 TYFETFLLLLKS--KMFWGYALIYGASFGGFFAFFSGAPFVYI-DIMGVSPS----------VFGLLFALNIIAMIFGGF 260 (385)
T ss_pred HHHHHHHHHHcC--chhHHHHHHHHHHHHHHHHHHHcChHHHH-HHcCCCHH----------HHHHHHHHHHHHHHHHHH
Confidence 223345556666 67776666655555555555556666553 22222221 112223345677788999
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhh
Q 012666 351 LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (458)
Q Consensus 351 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (458)
+.+++.||+|+|+.+..+..+..++.+++..... +.............+.|++.+...+.......|.
T Consensus 261 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 328 (385)
T TIGR00710 261 LNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI------------LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALED 328 (385)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH------------hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988887777777666554421 1101233445556677888888887777777777
Q ss_pred hcccccccchhhhHHHHHHHhhh
Q 012666 431 TESLGLGQGLSLGVLNLAIVIPQ 453 (458)
Q Consensus 431 ~~~~~~~~g~~~g~~~~~~~~~~ 453 (458)
.| +.+|++.++.+.......
T Consensus 329 ~~---~~~g~~~~~~~~~~~~~g 348 (385)
T TIGR00710 329 FP---HVAGTASALFGTLRLVLG 348 (385)
T ss_pred Cc---ccchHHHHHHHHHHHHHH
Confidence 65 457888998887765433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=227.97 Aligned_cols=346 Identities=22% Similarity=0.319 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHH
Q 012666 39 VAGGIQFGWALQLSLLT-PYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (458)
Q Consensus 39 ~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~ 117 (458)
..+...+......+.+| .+.+++|.+..+.+++.+++.++..+..++.|+++| |+||||.++. +.+...++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~l~~-~~~~~~~~~~~ 78 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSD----RFGRRRVLII-GLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHH----HS-HHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCeeeEee-hhhhhhhHHHH
Confidence 34445566677777888 666889999999999999999999999999999999 9999997666 44545555343
Q ss_pred HhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 012666 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (458)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (458)
..++++. +.+++.+++.|++.+...+...+++.|++|+++|+ +++++......+|..+++.++
T Consensus 79 ~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~ 141 (352)
T PF07690_consen 79 LAFASNF---------------WLLLIARFLLGIGSGFFSPASNALIADWFPPEERG--RAFGILSAGFSLGSILGPLLG 141 (352)
T ss_dssp HHHHCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhH---------------HHHhhhccccccccccccccccccccccchhhhhh--hccccccchhhhhhhcccchh
Confidence 3344554 67889999999999999999999999999999999 999999999999999999998
Q ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHH-H
Q 012666 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE-L 276 (458)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 276 (458)
+...... +|++.|++.+++.++..++..++.++++++++++++.+++ +++++..++ .
T Consensus 142 ~~l~~~~---------------~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 199 (352)
T PF07690_consen 142 GFLISYF---------------GWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGF 199 (352)
T ss_dssp HHCCCHC---------------HHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-C
T ss_pred hhhhhcc---------------ccccccccccchhhhhhhhHhhhhhhcccccccccccccc-------ccccccccccc
Confidence 8754322 8999999999888888776556666555444333222111 001111111 2
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012666 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (458)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 356 (458)
+...++ +.+|......+...........+.+.|+. +.++.+ +............+...++.++.+++.
T Consensus 200 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (352)
T PF07690_consen 200 KSLFKN--PVLWILLIAFFLFFFVFSGFSFFLPLYLQ-EVLGFS---------GPSQAGLLFSIFGIVGIIGSLLAGRLS 267 (352)
T ss_dssp THHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHCC---------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc--chhhhhhhhhhHHHHHHHHhhcccchhhh-hccCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233 44554444444444455566667777643 223322 011122224445667777899999999
Q ss_pred HhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccccc
Q 012666 357 RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (458)
Q Consensus 357 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
||+++|+..........+..+.+...... .+....+....+.|++.+...+...+++.|.+|+ +
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~ 331 (352)
T PF07690_consen 268 DRFGRRRRLLIAILLLILGALGLLLLPFS--------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP--E 331 (352)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCSHHH--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT--C
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--H
Confidence 99999887776666666655555443210 0345556677788999999899999999999999 9
Q ss_pred ccchhhhHHHHHHHhhhhhc
Q 012666 437 GQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 437 ~~g~~~g~~~~~~~~~~~i~ 456 (458)
.+|++.|+.+....++..++
T Consensus 332 ~~g~~~g~~~~~~~~~~~ig 351 (352)
T PF07690_consen 332 YRGTAFGLFNSIGSLGGIIG 351 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999998876
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=225.42 Aligned_cols=351 Identities=14% Similarity=0.058 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHH
Q 012666 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (458)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (458)
..+...+.......+.|.+.+++|.+..+.+++.++..++..++.++.|+++| |+|||+.++. +.+...++.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~-~~~~~~~~~~~~ 99 (398)
T TIGR00895 25 IMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLAD----RIGRKRVLLW-SILLFSVFTLLC 99 (398)
T ss_pred HHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhhhHHHHHH-HHHHHHHHHHHH
Confidence 33333445556666788888999999999999999999999999999999999 9999888777 444455555555
Q ss_pred hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhc
Q 012666 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (458)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (458)
.+.++. +.+++.+.+.|++.+...+...+++.|++|+++|+ ++.++......+|..+++.+++
T Consensus 100 ~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 100 ALATNV---------------TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRG--TAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHccch---------------HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhc--hhHhhHhhHHHHHHHHHHHHHH
Confidence 555555 67778899999999999999999999999999999 9999999999999999999877
Q ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC--------------Ccccccc
Q 012666 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF--------------SEEGHEQ 264 (458)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--------------~~~~~~~ 264 (458)
...... +|+..|++.+++..+..++...+.||+++...++++++ +.+++..
T Consensus 163 ~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (398)
T TIGR00895 163 WLIPVF---------------GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALP 227 (398)
T ss_pred HHhhcc---------------cceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhcccccccccc
Confidence 643222 78888888876666666666677777654211110000 0000000
Q ss_pred ccchHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHH
Q 012666 265 SSDVHEAFLWELFGTFRYF--SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNS 342 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
+++.+++..++..+.+++. .+..+.+....++..........+.+.+.. + ++.++. ..........
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~----------~~~~~~~~~~ 295 (398)
T TIGR00895 228 EQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV-E-LGFSLS----------LAATGGALFN 295 (398)
T ss_pred ccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-cCCCHH----------HHHHHHHHHH
Confidence 0000111112222222211 133333333444444444455555553332 1 222211 1123334456
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhc
Q 012666 343 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 422 (458)
Q Consensus 343 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 422 (458)
++.+++.++.+++.||+|+|+..... .+.++...+..... + +.+...+..++.|++.+...+.
T Consensus 296 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~g~~~~~~~~~ 358 (398)
T TIGR00895 296 FGGVIGSIIFGWLADRLGPRVTALLL-LLGAVFAVLVGSTL-------------F---SPTLLLLLGAIAGFFVNGGQSG 358 (398)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHHh-------------h---CHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999998544433 33333333332211 1 2445566777888888888889
Q ss_pred hhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 423 PYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
..+++.|.+|+ +.+|+..|+.+....++..++.
T Consensus 359 ~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~g~ 391 (398)
T TIGR00895 359 LYALMALFYPT--AIRATGVGWAIGIGRLGAIIGP 391 (398)
T ss_pred HHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 8899999999998888887764
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=223.91 Aligned_cols=352 Identities=13% Similarity=0.034 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHH
Q 012666 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (458)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (458)
..+...+........+|.+.+++|+|..+.+++.+.+.++..+++++.|+++| |+|||+.+.+ +.+...++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~~~~-~~~~~~~~~~~~ 105 (434)
T PRK11663 31 GYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSD----RSNARYFMGI-GLIATGIINILF 105 (434)
T ss_pred HHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHh----hcCCchhHHH-HHHHHHHHHHHH
Confidence 33333344445667889999999999999999999999999999999999999 9999988766 555555566666
Q ss_pred hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhc
Q 012666 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (458)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (458)
.+.+++ +.+++.+.+.+++.+...+...+++.|++|+++|+ +++++.+...++|..+++.+++
T Consensus 106 ~~~~~~---------------~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~~~~ 168 (434)
T PRK11663 106 GFSSSL---------------WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERG--GWWAIWNTAHNVGGALIPLVVG 168 (434)
T ss_pred HHHhHH---------------HHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 566665 67777888888888888888999999999999999 9999999999999999998877
Q ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC-Ccc-ccc-cccchHHHHHHH
Q 012666 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF-SEE-GHE-QSSDVHEAFLWE 275 (458)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~-~~~-~~~~~~~~~~~~ 275 (458)
..... .+||+.|.+.+++.++..++..+.+||+|++...+..++ +++ ++. ++.++++...++
T Consensus 169 ~l~~~---------------~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (434)
T PRK11663 169 AIALH---------------YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKE 233 (434)
T ss_pred HHHHc---------------ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhh
Confidence 64322 289999998887766665555566777654321111100 000 000 000000011222
Q ss_pred HH--HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012666 276 LF--GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (458)
Q Consensus 276 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (458)
.. ..+++ +.++.+....++.......+..+.+.|+.++ ++.+... .........++..++.++.|
T Consensus 234 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~~~----------a~~~~~~~~~~~~~g~~~~g 300 (434)
T PRK11663 234 ILTKYVLLN--PYIWLLSFSYVLVYVVRAAINDWGNLYMSET-LGVDLVT----------ANSAVSMFELGGFIGALVAG 300 (434)
T ss_pred hHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHH----------HHHHHHHHHHHHHHHHHHHh
Confidence 22 13445 6777776666666666666667788887432 3333222 12334445677889999999
Q ss_pred HHHHhh--cChhhH-HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhh
Q 012666 354 KLCRKW--GAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (458)
Q Consensus 354 ~l~dr~--g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (458)
++.||+ ++|+.. ....+...+....+... +.. +...........|++.............|.
T Consensus 301 ~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 365 (434)
T PRK11663 301 WGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM--------------PFA-SYVMQAACFFTIGFFVFGPQMLIGMAAAEC 365 (434)
T ss_pred hhHHHhccCCccHHHHHHHHHHHHHHHHHHHc--------------ccc-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 999998 333332 22222222222222222 110 122222223333332211122334566788
Q ss_pred hcccccccchhhhHHHHHHHhhhhhcC
Q 012666 431 TESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 431 ~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.|+ +.+|+..|+.+....+|+.++.
T Consensus 366 ~~~--~~~g~~~g~~~~~~~~g~~~~p 390 (434)
T PRK11663 366 SHK--EAAGAATGFVGLFAYLGAALSG 390 (434)
T ss_pred ccH--hhHHhHHHHHHHHHHHHHHHhc
Confidence 887 8899999999999999988764
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=231.78 Aligned_cols=358 Identities=15% Similarity=0.139 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (458)
.++...+...+........+|.+.+++|.+..+.+++.+.+.++..++.++.|+++| |+|||+.++... ....++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~~-~~~~~~ 80 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK----RFGTRRLFLIST-FAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHH----HhCcHHHHHHHH-HHHHHH
Confidence 344455555667777888899999999999999999999999999999999999999 999999887744 445555
Q ss_pred HHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHH
Q 012666 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (458)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (458)
.+....++++ +.+++.+.+.|++.+...+...+++.|++|+++|+ ++.++......+|..+++
T Consensus 81 ~~~~~~~~~~---------------~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 81 SLLCGVAPNL---------------ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRG--RAMAIWGLTVLVAPALGP 143 (485)
T ss_pred HHHHhCcCCH---------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHhhhhh
Confidence 5555566665 78889999999999999999999999999999999 999999999999999999
Q ss_pred hhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC---------------c
Q 012666 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS---------------E 259 (458)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---------------~ 259 (458)
.+++...... +|++.|++.+.+.++..++..+..||+++++.++.+... .
T Consensus 144 ~~~~~l~~~~---------------~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~ 208 (485)
T TIGR00711 144 TLGGWIIENY---------------HWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLS 208 (485)
T ss_pred ccHhHhccCc---------------CceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 9987643322 899999998877777777666777765432221110000 0
Q ss_pred cccccccchHHHH---------------HHH--------HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcee
Q 012666 260 EGHEQSSDVHEAF---------------LWE--------LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREI 316 (458)
Q Consensus 260 ~~~~~~~~~~~~~---------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (458)
+.++......+.. .++ -.+.+++ +.++...+..++..........+.+.|+. +.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~ 285 (485)
T TIGR00711 209 EGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKY--RNFTIGCVYMSLLGLGLYGSFYLLPLYLQ-QV 285 (485)
T ss_pred hCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 0000000000000 000 0234455 56666666667766676777777777774 33
Q ss_pred ccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012666 317 YGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDL 396 (458)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (458)
++.++.. .........++.+++.++.|++.||+|+|+.+..+..+.+++..++.+.. .
T Consensus 286 ~g~s~~~----------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~----~-------- 343 (485)
T TIGR00711 286 LGYTALQ----------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF----T-------- 343 (485)
T ss_pred cCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC----C--------
Confidence 3333322 12334446677888999999999999999999888888777777665321 0
Q ss_pred CCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 397 PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 397 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+.. ..+.......+.|++.+...+.......+..|+ +.+|++.|+.++...+|+.++.
T Consensus 344 ~~~-~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~ 401 (485)
T TIGR00711 344 PDT-PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP--HKIARGSSLSNFTRQLGGSIGT 401 (485)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHhHHHHHHHHHHHHHHHHHH
Confidence 111 234455567788888888776666777788888 8899999999999999888764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=233.70 Aligned_cols=369 Identities=11% Similarity=0.076 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
+........+|.+.+++|++..+.+++.++..++.+++.+++|+++| |+|||+.+++...+ ..++.++..+++++
T Consensus 181 ~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsD----R~GRR~~lii~lil-~~i~~ll~afa~s~ 255 (742)
T TIGR01299 181 VEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLAD----KLGRKQCLLICLSV-NGFFAFFSSFVQGY 255 (742)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHHHH-HHHHHHHHHHHhhH
Confidence 33445566778888999999999999999999999999999999999 99999998874444 44444555566665
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccc
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (458)
+.+++++++.|++.+...+...+++.|++|++.|+ +..++...+..+|.++++.++......
T Consensus 256 ---------------~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg--~~~g~~~~~~~iG~ila~~la~~il~~- 317 (742)
T TIGR01299 256 ---------------GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRG--EHLSWLCMFWMIGGIYAAAMAWAIIPH- 317 (742)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 78888999999999999999999999999999999 999999999999999988876542100
Q ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC-----------------cc-------
Q 012666 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS-----------------EE------- 260 (458)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-----------------~~------- 260 (458)
+.+...........+||+.+++.++..++ .++..+++||+|+....+.+.++ .+
T Consensus 318 -~G~~~~~g~~~~~~gWR~l~~i~~lp~ll-~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~ 395 (742)
T TIGR01299 318 -YGWSFQMGSAYQFHSWRVFVIVCAFPCVF-AIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVN 395 (742)
T ss_pred -ccchhccccccccccHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHH
Confidence 00000000001123799988887765444 45556778999764221111000 00
Q ss_pred -------cc-----ccccc--------hH----HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhce
Q 012666 261 -------GH-----EQSSD--------VH----EAFLWELFGTFRYF-SGTIWIILIVTALTWLGWFPFLLFDTDWMGRE 315 (458)
Q Consensus 261 -------~~-----~~~~~--------~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (458)
.+ ++... +. ...+.++++.++.. .++.+.+.+..+...++++.+..|.|..+...
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~ 475 (742)
T TIGR01299 396 HIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHL 475 (742)
T ss_pred HHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 00 00111233333221 13344455566666677778888877654220
Q ss_pred ----------ecc----------CCCc--------------------------------------cc-------------
Q 012666 316 ----------IYG----------GEPN--------------------------------------EG------------- 324 (458)
Q Consensus 316 ----------~~~----------~~~~--------------------------------------~~------------- 324 (458)
.++ .+.. ..
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 555 (742)
T TIGR01299 476 QADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTL 555 (742)
T ss_pred HHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhh
Confidence 000 0000 00
Q ss_pred -------------------------ccccccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Q 012666 325 -------------------------QNYATGV-------RMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILM 372 (458)
Q Consensus 325 -------------------------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 372 (458)
.+.+... ........+.+++.+++.++.++++||+|||+++..+.++.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~ls 635 (742)
T TIGR01299 556 FENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLS 635 (742)
T ss_pred ccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 0000000 01112233456778899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhh
Q 012666 373 ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIP 452 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 452 (458)
+++.+++.+.. +...+++..+++++..+...+..+++++|.+|+ +.||+++|+.+....+|
T Consensus 636 ai~~ll~~~~~-----------------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt--~~Rgta~Gi~~~~~rlG 696 (742)
T TIGR01299 636 CISCFFLSFGN-----------------SESAMIALLCLFGGLSIAAWNALDVLTVELYPS--DKRATAFGFLNALCKAA 696 (742)
T ss_pred HHHHHHHHHHc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHH
Confidence 88888777653 233444555566777777778889999999999 88999999999999888
Q ss_pred hhhcC
Q 012666 453 QVSSC 457 (458)
Q Consensus 453 ~~i~~ 457 (458)
.++++
T Consensus 697 aiigp 701 (742)
T TIGR01299 697 AVLGI 701 (742)
T ss_pred HHHHH
Confidence 88764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=223.63 Aligned_cols=330 Identities=15% Similarity=0.108 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 47 ~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
.+....+.|.+.+++|+|..+.+++.+++.++..+++++.|+++| |+|||++++.. .....++.+...+++++
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d----~~G~r~~~~~~-~~~~~~~~~~~~~~~~~-- 91 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLAD----KFGPRAVAMLG-GILYGLGFTFYAIADSL-- 91 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH----HcCccchhHHh-HHHHHHHHHHHHHHHHH--
Confidence 344556788888999999999999999999999999999999999 99999998874 44555556666677666
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccc
Q 012666 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (458)
+.+++.+.+.|++.+..++.....+.|++| ++|+ ++.++.....++|..+++.+.+.....
T Consensus 92 -------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~--- 152 (377)
T TIGR00890 92 -------------AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRG--LASGIIIGGYGLGSFILSPLITSVINL--- 152 (377)
T ss_pred -------------HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccH--HHHHHHHHhcchhHhHHHHHHHHHHhc---
Confidence 778888889999988887777888888887 5788 899999999999987765554331111
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHH
Q 012666 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGT 286 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (458)
.+||+.|++.+++.++..+..+++.||+++++.+++ + +. + .++ ++.++.+++ +.
T Consensus 153 ------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-~----~~~---~~~~~~~~~--~~ 206 (377)
T TIGR00890 153 ------------EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTN--I--EV-S----VKD---YTVWEMLRT--PQ 206 (377)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHheecCchhccccC--c--cc-c----hhh---hhHHHHHcC--cc
Confidence 289999999988887777777677766543221110 0 00 0 011 123345555 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHH
Q 012666 287 IWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG 366 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 366 (458)
++......++..........+.+.|.. + ++.+. ...........+..++++++.+++.||+|||+.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 274 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYGQ-S-LGLSD----------GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS 274 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-H-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 666555555444443333344444432 2 11111 11122334457778889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHH
Q 012666 367 ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLN 446 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 446 (458)
.+.++.+++.+++...+ .. ..........+.+++.+...+...++++|.+|+ +++|+..|+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~g~~~ 337 (377)
T TIGR00890 275 IVFGISAVGMAAMLFIP--------------ML-NDVLFLATVALVFFTWGGTISLFPSLVSDIFGP--ANSAANYGFLY 337 (377)
T ss_pred HHHHHHHHHHHHHHHcc--------------cc-hhHHHHHHHHHHHHHhccchhccHHHHHHHhhh--hhhhhHhHHHH
Confidence 88888888777665542 11 122233445566777777677777899999998 88999999999
Q ss_pred HHHHhhhhhcC
Q 012666 447 LAIVIPQVSSC 457 (458)
Q Consensus 447 ~~~~~~~~i~~ 457 (458)
....+++.+++
T Consensus 338 ~~~~~g~~~~~ 348 (377)
T TIGR00890 338 TAKAVAGIFGG 348 (377)
T ss_pred HHHHHHHHHHH
Confidence 99998887653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=221.43 Aligned_cols=363 Identities=12% Similarity=0.060 Sum_probs=230.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
.++......+..+...+.........|.+.+++|.+..+.+++.++..++..+++++.|.++| |+|||++++.. .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~g~r~~~~~~-~ 84 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGD----RYGRRLPMVTS-I 84 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHH-H
Confidence 344445555566666677777888889999999999999999999999999999999999999 99999988874 4
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
+..+++.+...+.+++ +.+++.+++.|++.+...+...+++.|++|+++|+ ++.++......+
T Consensus 85 ~~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~ 147 (405)
T TIGR00891 85 VLFSAGTLACGFAPGY---------------ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN--KASGLLISGYAV 147 (405)
T ss_pred HHHHHHHHHHHHhccH---------------HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhh--HHHHHHHHHHHH
Confidence 4455555555566665 77888999999999999999999999999999999 999999999999
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccc----cc
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH----EQ 264 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~----~~ 264 (458)
|..+++.+++...... ..+|++.|.+.++..++ .++.....||+++.+++++++++..+. .+
T Consensus 148 g~~~~~~l~~~l~~~~-------------~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (405)
T TIGR00891 148 GAVVAAQVYSLVVPVW-------------GDGWRALFFISILPIIF-ALWLRKNIPEAEDWKEKHAGKALVRTMVDILYG 213 (405)
T ss_pred HHHHHHHHHHHHHHhc-------------CccHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc
Confidence 9999998876632111 01599988876554443 334445567765322211111000000 00
Q ss_pred ccchHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHH
Q 012666 265 SSDVHEAFLWELFGTFRYF----SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML 340 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
+++..+...++.....++. ++.+........+..........+.+.|+.++ ++.+.. ........
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~----------~~~~~~~~ 282 (405)
T TIGR00891 214 GEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-LGLSPH----------TVANIVVF 282 (405)
T ss_pred cchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-hCCCHH----------HHHHHHHH
Confidence 0000011111111111111 11122222222222333333444556665322 222211 11222334
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHh
Q 012666 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (458)
Q Consensus 341 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (458)
..++.+++.++.+++.||+|||+.+..+..+..+......... + +.+...+...+.+...+...
T Consensus 283 ~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~ 346 (405)
T TIGR00891 283 SNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG-------------A---NVAVLGLGLFFQQMLVQGIW 346 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC-------------C---chHHHHHHHHHHHHHHccch
Confidence 5777889999999999999999988877665533332222211 1 22333344344555555555
Q ss_pred hchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+...+++.|.+|+ +.+|++.|+.+....++..++
T Consensus 347 ~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g 380 (405)
T TIGR00891 347 GILPKHLGEYFPT--DQRAAGLGFTYQLGNLGGALA 380 (405)
T ss_pred hhHHHHHhhhCCc--chhHHHhhHHHHHHHHHHHHH
Confidence 6667889999998 889999999998888887765
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-26 Score=218.88 Aligned_cols=368 Identities=14% Similarity=0.140 Sum_probs=245.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhH
Q 012666 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (458)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~ 104 (458)
++.+.++.+..++.-++.++.+.....++..|. +.+|+++..+|.+..+..+.+++..|+.|+++||+++|+||||+++
T Consensus 4 ~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~i 83 (460)
T PRK11462 4 EVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWV 83 (460)
T ss_pred CcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhH
Confidence 356778888888887777777777777777766 7799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcc-cccchhhhhhHHHH
Q 012666 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFS 183 (458)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~ 183 (458)
+.+.+...++..+++..|+. +......++.+...+..++......+..++.+|+.+ +++|. +..++..
T Consensus 84 l~g~i~~~i~~~llf~~p~~---------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt--~l~s~r~ 152 (460)
T PRK11462 84 LFGALPFGIVCVLAYSTPDL---------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRI--SLQSWRF 152 (460)
T ss_pred hHHHHHHHHHHHHHHhCCCC---------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHH--HHHHHHH
Confidence 98877777777766555542 222334556666677789999999999999999998 56677 8999999
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc
Q 012666 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (458)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (458)
.+..+|..+++.+... .......+....+|+....+.+++.+++.++++...||+++.+.++
T Consensus 153 ~~~~iG~~~~~~~~~p--------lv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~---------- 214 (460)
T PRK11462 153 VLATAGGMLSTVLMMP--------LVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTT---------- 214 (460)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccC----------
Confidence 9999888777666322 1100000011136777777777766666666666666653221100
Q ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHH
Q 012666 264 QSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (458)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
.+..+.++..++| |+++.++...++..............|.. ..++. + ......+....+
T Consensus 215 ------~~~~~~l~~~~~N--k~~~~l~~~~~~~~~~~~~~~~~~~y~~~-y~~g~-~----------~~~~~~l~~~~i 274 (460)
T PRK11462 215 ------TSMREDLRDIWQN--DQWRIVGLLTIFNILAVCVRGGAMMYYVT-WILGT-P----------EVFVAFLTTYCV 274 (460)
T ss_pred ------CCHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhHhhhhhh-hhcCC-h----------HHHHHHHHHHHH
Confidence 0122344556666 77777765555555443333222222221 11211 0 011122334567
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhch
Q 012666 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (458)
Q Consensus 344 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (458)
..+++.++++++.||+++|+.+..+..+.++..+++.+. |.. +.+..++..++.|++.+...+..
T Consensus 275 ~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~l~g~~~~~~~~l~ 339 (460)
T PRK11462 275 GNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV--------------PMQ-ASITMFVFIFVIGVLHQLVTPIQ 339 (460)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--------------chh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999988765555444433333333 211 22233444556677777777788
Q ss_pred hHhHHhhhccc-----ccccchhhhHHHHHHHhhhhhcC
Q 012666 424 YALVSIRTESL-----GLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 424 ~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+++++|..+.+ +|..|..++..+++..+++.+++
T Consensus 340 ~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~ 378 (460)
T PRK11462 340 WVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGG 378 (460)
T ss_pred HHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 89999988842 46678888888888888877664
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=230.04 Aligned_cols=345 Identities=10% Similarity=0.043 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhh-----c
Q 012666 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL-----S 121 (458)
Q Consensus 47 ~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~-----~ 121 (458)
-.......|.+.+++|+++.+.|++.+.+.+++.+++++.|+++| |+||||.+...... ..+....... +
T Consensus 45 r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~r~~l~~~~~~-~~~~~~~~~~~~~~~~ 119 (467)
T PRK09556 45 RKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD----GKNTKQFLPFLLIL-SAICMLGFGASLGSGS 119 (467)
T ss_pred hcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh----ccCccchHHHHHHH-HHHHHHHHHHHHhccc
Confidence 344456688888999999999999999999999999999999999 99999987663333 2222222222 3
Q ss_pred cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccc
Q 012666 122 ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG 201 (458)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 201 (458)
+++ +.+++.|.+.|++.+...+...+++.|++|+++|+ +++++.....++|..+++.+.....
T Consensus 120 ~~~---------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg--~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 120 VSL---------------GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRG--RFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred chH---------------HHHHHHHHHHHHHHhccchHHHHHHHHHcCcccee--eeEEeeecccchhhhHHHHHHHHHH
Confidence 343 78888999999999999999999999999999999 9999999999999999988754321
Q ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC--Ccc--ccccccchHHHHHHH-H
Q 012666 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF--SEE--GHEQSSDVHEAFLWE-L 276 (458)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~-~ 276 (458)
... + ..+|+..|.+.+++.++..++.+++.+|+|++....++++ +++ ++++..++++...++ .
T Consensus 183 ~~~-~-----------~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (467)
T PRK09556 183 NYF-F-----------DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIF 250 (467)
T ss_pred Hhh-c-----------cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHH
Confidence 100 0 0258888888777776666666666666554321110000 000 000000000000111 1
Q ss_pred H-HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 012666 277 F-GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (458)
Q Consensus 277 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 355 (458)
. +.+++ +.+|...+..++..........+.|.|+.+ .++.++.. .........++.+++.++.|++
T Consensus 251 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~-~~g~s~~~----------a~~~~~~~~~~~~ig~~~~G~l 317 (467)
T PRK09556 251 VEYVLKN--PVIWLLCFANIFLYIVRIGIDNWSPVYAFQ-ELGFSKED----------AINTFTLFEIGALVGSLLWGWL 317 (467)
T ss_pred HHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24566 788888888777777777777888888843 34433322 1233344566788999999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccc
Q 012666 356 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (458)
Q Consensus 356 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
+||+++|+.+.....+..++........ .. +.+...+...+.|+..............|.+|+
T Consensus 318 sDr~g~r~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~-- 380 (467)
T PRK09556 318 SDLANGRRALVACIALALIIFTLGVYQH-------------AT--SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK-- 380 (467)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHHHHHh-------------cC--cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch--
Confidence 9999999877655444333332222221 11 233344445555543322222334567799998
Q ss_pred cccchhhhHHHHHHHh-hhhh
Q 012666 436 LGQGLSLGVLNLAIVI-PQVS 455 (458)
Q Consensus 436 ~~~g~~~g~~~~~~~~-~~~i 455 (458)
+.+|++.|+.|....+ |..+
T Consensus 381 ~~~g~a~gi~~~~g~l~g~~~ 401 (467)
T PRK09556 381 KAIGVANGIKGTFAYLFGDSF 401 (467)
T ss_pred hhHHHHHHHHHHHHHHHhHHH
Confidence 8999999999998886 5343
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-26 Score=215.92 Aligned_cols=340 Identities=15% Similarity=0.125 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
++.+.......+............+|++.+++|.++.+.++..++..+...+++++.|+++| |+||||.++....+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D----r~grr~~~~~~~~~ 94 (394)
T PRK10213 19 WSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQ----ATDRRYVVILFAVL 94 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCcHHHHHHHHHH
Confidence 34344444443333334445556788899999999999999999999999999999999999 99999988775544
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
..++.+...+.+++ +.+++.|.+.|++.+...+...+++.|++|+++|+ ++.++.....++|
T Consensus 95 -~~~~~~~~~~~~~~---------------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~--~a~~~~~~~~~~g 156 (394)
T PRK10213 95 -LTLSCLLVSFANSF---------------SLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVP--KALSVIFGAVSIA 156 (394)
T ss_pred -HHHHHHHHHHHChH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHH--HHHHHHHHHHHHH
Confidence 45555555566666 88889999999999999999999999999999999 9999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchH
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (458)
..+++.+++.+.... +||+.|++.+++.+++.+......||+++++++ ..
T Consensus 157 ~~ig~~l~~~l~~~~---------------gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~---------------~~ 206 (394)
T PRK10213 157 LVIAAPLGSFLGELI---------------GWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH---------------QK 206 (394)
T ss_pred HHHHHHHHHHHHhhc---------------CHHHHHHHHHHHHHHHHHHHHHHCCCCCccccc---------------ch
Confidence 999999988743322 899999998876666555554455664321100 01
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHH
Q 012666 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (458)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (458)
++.++.+++ |.++...+..++...+......+.++++.+ .++.++.. ........+++.+++.
T Consensus 207 ----~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~----------~g~~~~~~~~~~iig~ 269 (394)
T PRK10213 207 ----QNTFRLLQR--PGVMAGMIAIFMSFAGQFAFFTYIRPVYMN-LAGFGVDG----------LTLVLLSFGIASFVGT 269 (394)
T ss_pred ----hHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhH----------HHHHHHHHHHHHHHHH
Confidence 122345566 777776555555555555555555333322 22322211 1223334567788888
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHH-HHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHH
Q 012666 350 VLMEKLCRKWGAGFIWGISNILMALC-FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (458)
Q Consensus 350 ~~~g~l~dr~g~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (458)
++.+++.||.+ |+.+..+..+..++ +++....+ +.+.......+.|++.+...+...+++.
T Consensus 270 ~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 331 (394)
T PRK10213 270 SLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGS-----------------DKIVATGVAIIWGLTFALVPVGWSTWIT 331 (394)
T ss_pred HHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999964 44443333333333 33333321 3455566778889888888888888888
Q ss_pred hhhcccc-cccchhhhHHHHHHHhhhhhc
Q 012666 429 IRTESLG-LGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 429 ~~~~~~~-~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+..|++. +..+...+..++...+|..++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~lg~~~G~~l~ 360 (394)
T PRK10213 332 RSLADQAEKAGSIQVAVIQLANTCGAAIG 360 (394)
T ss_pred HHCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887521 111223444455555555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=226.39 Aligned_cols=346 Identities=16% Similarity=0.063 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 012666 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (458)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (458)
.........|.+.+++|.++.+.+++.+++.++..++.++.|+++| |+|||+.++. +.+...++.....+.++.
T Consensus 9 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~-~~~~~~~~~~~~~~~~~~- 82 (399)
T TIGR00893 9 DRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLD----RFGARKTLAV-FIVIWGVFTGLQAFAGAY- 82 (399)
T ss_pred HHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHH----hcCcceeeHH-HHHHHHHHHHHHHHHcCH-
Confidence 4455556677788999999999999999999999999999999999 9999998877 444455555555566665
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccc
Q 012666 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (458)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (458)
+.+++.+.+.|++.+...+...+++.|++|+++|+ +++++......+|..+++.+++......
T Consensus 83 --------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~- 145 (399)
T TIGR00893 83 --------------VSLYILRVLLGAAEAPFFPGIILIVASWFPASERA--TAVSIFNSAQGLGGIIGGPLVGWILIHF- 145 (399)
T ss_pred --------------HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHH--HHHHHHHHhchHHHHHHHHHHHHHHHhC-
Confidence 78889999999999999999999999999999999 9999999999999999999877533222
Q ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc---cc---cccccchHHHHHHHHHHH
Q 012666 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE---EG---HEQSSDVHEAFLWELFGT 279 (458)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~ 279 (458)
+|++.|.+.+++.++..++..+..||+++++....+++++ +. +.+++++++...++.++.
T Consensus 146 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (399)
T TIGR00893 146 --------------SWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKEL 211 (399)
T ss_pred --------------CchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHH
Confidence 7999999888877777776666777765432211111000 00 000000111112234555
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012666 280 FRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 359 (458)
+++ |+++..++..++.......+..+.+.|+.+. ++.++.. .........+..+++.++.+++.||+
T Consensus 212 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~ 278 (399)
T TIGR00893 212 LKD--RRVWGLALGQFLVNIGLGFFLTWFPTYLVQE-RGLSILE----------AGFMASLPGIVGFIGMILGGRLSDLL 278 (399)
T ss_pred hcC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hcccHHH----------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 7788888777777777777777888877432 2222211 12223345677788999999999999
Q ss_pred cChhhH-HHHHHHHHHHHH---HHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccc
Q 012666 360 GAGFIW-GISNILMALCFL---AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (458)
Q Consensus 360 g~r~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
+||+.. ........++.+ ...... +.....+.......+.+.+.+ ..+..+++.+|.+|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-- 342 (399)
T TIGR00893 279 LRRGKSLVFARKTAIIAGLVLSLLMFAT-------------NYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPG-- 342 (399)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHh-------------ccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh--
Confidence 998621 111111111111 111111 000022223333333333333 677888999999999
Q ss_pred cccchhhhHHHHHHHhhhhhcC
Q 012666 436 LGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+.+|++.|+.+....++..++.
T Consensus 343 ~~~g~~~~~~~~~~~~g~~~~~ 364 (399)
T TIGR00893 343 NIAGLTGGLINSLGNLGGIVGP 364 (399)
T ss_pred hHHHHHHHHHHHHHHHhhhhhh
Confidence 8899999999999998887764
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=224.80 Aligned_cols=361 Identities=14% Similarity=0.102 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
.+..+..+...+...+..+...+.+|.+.+++|.++.+.+++.+.+.++..++.++.|+++| |+||||.++.. ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~~-~~ 83 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLAD----RVGVRNIFFTA-IV 83 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHH-HH
Confidence 44566666666766777778888999999999999999999999999999999999999999 99999988764 44
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
...++.+...+.++. +.+++.+.+.|++.+...+...+++.|.+|+++|+ ++.++.....++|
T Consensus 84 ~~~~~~~~~~~~~~~---------------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g 146 (471)
T PRK10504 84 LFTLGSLFCALSGTL---------------NELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYM--AAMTFVTLPGQVG 146 (471)
T ss_pred HHHHHHHHHHHhCCH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHH
Confidence 444454555555554 67788899999999999899999999999999999 9999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC-----------
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS----------- 258 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----------- 258 (458)
..+++.+++.+.... +|++.|.+......+..+......|+.+..+.+.+....
T Consensus 147 ~~~g~~~~g~l~~~~---------------gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 211 (471)
T PRK10504 147 PLLGPALGGLLVEYA---------------SWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLT 211 (471)
T ss_pred HHhhhHHHHHHHhhc---------------cHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHH
Confidence 999999987743322 899999998877766666666655554322111000000
Q ss_pred --ccccccc-cch-----------------------HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012666 259 --EEGHEQS-SDV-----------------------HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWM 312 (458)
Q Consensus 259 --~~~~~~~-~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
.++.+.. ... .++...+ .+.++| |+++..+...++.+.+......+.+.|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (471)
T PRK10504 212 LALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRT--RTFSLGLAGSFAGRIGSGMLPFMTPVFL 288 (471)
T ss_pred HHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000 0000001 134556 7777777777777766655555566665
Q ss_pred hceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 012666 313 GREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR 392 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (458)
. ..++.++. ...+......+...++.++.+++.||+|+|+++..+..+.++...++.+..
T Consensus 289 ~-~~~g~~~~----------~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--------- 348 (471)
T PRK10504 289 Q-IGLGFSPF----------HAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA--------- 348 (471)
T ss_pred H-HHcCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc---------
Confidence 3 22232221 112233335566667778999999999999999888887777766655542
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 393 GHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+. .+.+......++.|++.+...+....+..+.+|+ +.+|...|+.++...+|+.++.
T Consensus 349 ----~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~ 406 (471)
T PRK10504 349 ----LL-GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD--NLASSGNSLLSMIMQLSMSIGV 406 (471)
T ss_pred ----cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HhccchHHHHHHHHHHHHHHHH
Confidence 11 1233334456666788887787888899999998 8899999999999888887653
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-26 Score=216.03 Aligned_cols=342 Identities=16% Similarity=0.176 Sum_probs=228.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHH
Q 012666 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC 106 (458)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~ 106 (458)
..++++.......+...++.....+.+|.+. +++|.|+.+.|++.+++.++..+.+++.|+++| |+||||.++..
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D----r~g~r~~l~~~ 87 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYAD----TLGPKKAVVFG 87 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHh----ccCCcchHHHH
Confidence 3445566666666777778888888999875 789999999999999999999999999999999 99999998874
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHH
Q 012666 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (458)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (458)
.....+.+..+. +..... +........+++.+++.|++.+...+...+++.|+.|+++|+ +++++.....
T Consensus 88 ~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~ 157 (399)
T PRK05122 88 LCGCALSGLLYL-LAGLLA-------AWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTG--RVISWNGIAT 157 (399)
T ss_pred HHHHHHHHHHHH-Hhhhhh-------ccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhc--cchhhhhhhh
Confidence 444333333222 211100 001123467889999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccccc
Q 012666 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (458)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (458)
.+|..+|+.+++.+.... +|+..+.+.+++.++..+ .....|+.+ .++ + +
T Consensus 158 ~~g~~~g~~l~~~l~~~~---------------g~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~-------~-~--- 207 (399)
T PRK05122 158 YGALAIGAPLGVLLYHWG---------------GLAGLGLLIMLLALLGLL-LARPRPAVP---PVK-------G-E--- 207 (399)
T ss_pred hHHHHHHHHHHHHHHHcc---------------cHHHHHHHHHHHHHHHHH-HHhcCCCCC---CCC-------c-c---
Confidence 999999999887643222 788877765554332222 111112211 000 0 0
Q ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHH
Q 012666 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (458)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (458)
+++ .++ .+++ .+.......+...++.....+.+.|+.+. +. ...........++.+
T Consensus 208 --~~~-~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~ 263 (399)
T PRK05122 208 --RLP-FRR---VLGR----VWPYGMGLALASIGFGTIATFITLYYAAR--GW------------DGAALALTLFGVAFV 263 (399)
T ss_pred --chh-HHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc------------ccchHHHHHHHHHHH
Confidence 000 111 1111 11111112222333334444555554321 11 011122334566677
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHh
Q 012666 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (458)
Q Consensus 347 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (458)
++.++.+++.||+++|+.+..+..+.+++.+++...+ +.+..++..++.|++.+...+.....
T Consensus 264 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~G~~~~~~~~~~~~~ 326 (399)
T PRK05122 264 GARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP-----------------SPWMALIGAALTGFGFSLVFPALGVE 326 (399)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8889999999999999998888887777776666542 34455667788888888877777777
Q ss_pred HHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 427 VSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 427 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
..|..|+ +.+|++.|+++....+++.++
T Consensus 327 ~~~~~~~--~~~g~~~g~~~~~~~~g~~~~ 354 (399)
T PRK05122 327 AVKRVPP--QNRGAALGAYSVFLDLSLGIT 354 (399)
T ss_pred HHHhCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888 889999999999888887654
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-26 Score=215.45 Aligned_cols=332 Identities=12% Similarity=0.091 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHH
Q 012666 40 AGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (458)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (458)
.+...++.....+.+|.++ +++|.|+.+.|++.+.+.+...+.+|+.|+++| |+||||.++..+.....++....
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D----r~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSD----YQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHHHHHH
Confidence 4555667778888899876 679999999999999999999999999999999 99999987765655555555555
Q ss_pred hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhh--hHHHHHHHHHHHHHHHhh
Q 012666 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVA--NAYFSLFMAVGNILGYAT 196 (458)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~g~~ig~~~ 196 (458)
.+++++ +.+++.+.+.+.+.+...+...++..|..|+++|+ +. .+......++|..+++.+
T Consensus 82 ~~~~~~---------------~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~ig~~~ 144 (375)
T TIGR00899 82 AWNRNY---------------FLLLVLGVLLSSFASTANPQLFALAREHADRTGRE--AVMFSSVMRAQISLAWVIGPPL 144 (375)
T ss_pred HhcchH---------------HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchh--hHHHHHHHHHHHhHHHHHhhhH
Confidence 566554 56666777777766677777788888988877766 44 577777888999999988
Q ss_pred hccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHH
Q 012666 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 276 (458)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (458)
++...... +||+.|++.+++.++..++.++.+||.++++.+++ ++ .+.
T Consensus 145 ~~~l~~~~---------------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----------~~~ 192 (375)
T TIGR00899 145 AFWLALGF---------------GFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL-------TR----------LEV 192 (375)
T ss_pred HHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc-------Cc----------chh
Confidence 77643222 89999999988777777777677787654322110 00 011
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012666 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (458)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 356 (458)
.+.+++ ++++......++.+........+.+.|+.+ .++.++.. ............+++.++.+++.
T Consensus 193 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~----------~g~~~~~~~~~~~~~~~~~g~l~ 259 (375)
T TIGR00899 193 RGLLAS--RDTRLLFVACTLMWGCNILYIINMPLLIIH-ELGLPDKL----------AGLMMGTAAGLEIPFMLLAGYLI 259 (375)
T ss_pred hhhhcC--cchHHHHHHHHHHHHHHHHHHhhhHHHHHH-HcCCCHHH----------HHHHHHHHHHHHHHHHHhHHHHH
Confidence 123344 555555544444444444444455655532 22322211 11122223445566778999999
Q ss_pred HhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccccc
Q 012666 357 RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (458)
Q Consensus 357 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
||+|+|+.+..+.++..+....+...+ +.+...+...+.|++.+...+....+..|..|+
T Consensus 260 ~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--- 319 (375)
T TIGR00899 260 KRFGKRRLMLLAALAGVAFYTGLAADN-----------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG--- 319 (375)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc---
Confidence 999999988777666555544443332 344455566677888887777778888888875
Q ss_pred ccchhhhHHHHHHHhhhhhcC
Q 012666 437 GQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 437 ~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+++++.|+.+....+|+.+++
T Consensus 320 ~~~~~~~~~~~~~~~g~~~g~ 340 (375)
T TIGR00899 320 RAGAATTLYTNTGRVGWIIAG 340 (375)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 356888998888887776653
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=217.58 Aligned_cols=348 Identities=14% Similarity=0.096 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcc
Q 012666 43 IQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (458)
Q Consensus 43 ~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (458)
............|.+.+++|.+..+.+++.++..++..++.++.|+++| |+|||+.++. +.+...++.++..+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 7 YYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSD----RSNPRVFLPI-GLILCAIVNLFFGFST 81 (379)
T ss_pred HHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHH----hhCCeehhHH-HHHHHHHHHHHHHHhh
Confidence 3345555666778888999999999999999999999999999999999 9999998877 4445555556665666
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHh-hhcccc
Q 012666 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA-TGSFSG 201 (458)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~-~~~~~~ 201 (458)
+. +.+++.+.+.|++.+...+...+++.|++|+++|+ ++.++......+|..+++. +++...
T Consensus 82 ~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 82 SL---------------WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG--TWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred hH---------------HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhhe--eeEeehhccchhHHHHHHHHHHHHHH
Confidence 65 78888999999999999999999999999999999 9999999999999999983 443322
Q ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC---Cc-ccc-ccccchHHHHHHHH
Q 012666 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF---SE-EGH-EQSSDVHEAFLWEL 276 (458)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~-~~~-~~~~~~~~~~~~~~ 276 (458)
.. .+|++.|++.+++.++..++.++..||+++.+..+..++ ++ +++ ++++++.+......
T Consensus 145 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (379)
T TIGR00881 145 EL---------------YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFL 209 (379)
T ss_pred hc---------------CCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHH
Confidence 11 289999998887777776777777777654322111111 00 000 00000001111123
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012666 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (458)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 356 (458)
.+.+++ +.++.+.+..++.......+..+.+.|+.+ .++.++. ..........+..+++.++.+++.
T Consensus 210 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~ 276 (379)
T TIGR00881 210 QYVLLN--KVLWYISLGYVFVYVVRTGILDWSPLYLTQ-EKGFSKE----------KASWAFTLYELGGLVGTLLAGWLS 276 (379)
T ss_pred HHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHH----------HHHHHHHHHHHHcchhHHHHHHHH
Confidence 344555 677777777777777767777777877743 2232221 112333345677788999999999
Q ss_pred HhhcChhhHHHHHHH---HHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcc
Q 012666 357 RKWGAGFIWGISNIL---MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (458)
Q Consensus 357 dr~g~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (458)
||..+|+........ ..++....... +. .+.+...+...+.|.......+....+..|.+|+
T Consensus 277 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 341 (379)
T TIGR00881 277 DKLFNGRRGPLAVFFMALIIVSLLVYWLN--------------PA-ANPLMDLICLFALGFLVYGPQMLIGVIASELAPK 341 (379)
T ss_pred HHHcCCcchHHHHHHHHHHHHHHHHHhcC--------------cc-hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc
Confidence 987443322222211 11121111111 11 1233344445555554444445556788999998
Q ss_pred cccccchhhhHHHHHHHhhhhhcC
Q 012666 434 LGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 434 ~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+.+|++.|+.+....+++.+++
T Consensus 342 --~~~g~~~g~~~~~~~~g~~~~~ 363 (379)
T TIGR00881 342 --KAAGTAAGFVGFFAYLGGILAG 363 (379)
T ss_pred --chhHHHHHHHHHhhhhhhhhhh
Confidence 8899999999999999887764
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=210.87 Aligned_cols=349 Identities=11% Similarity=0.053 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccC-CcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCT-SRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 48 ~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~-~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
......+|.+.++.|+|.++.++.... .+...+ .+++|+++||.+ +|+||||++++.+.+...+....+.+.++.
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~-- 80 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS-- 80 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc--
Confidence 345567888999999999999998755 444444 899999999653 345999998776666666665555444332
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccc
Q 012666 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (458)
...+.+....++.+.+.+...++..+++.|++|+|+|+ ++.++...+..+|.++++.+++.+....
T Consensus 81 ----------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~l~~~l~~~~-- 146 (356)
T TIGR00901 81 ----------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELG--YGSTIYIVGYRAGMLLSGSLALVLASPE-- 146 (356)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhc--hHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 12244555555667777888889999999999999999 9999999999999999999876632211
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcch-H
Q 012666 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS-G 285 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 285 (458)
+ .. +....+||..|++.++..++..++.++..||++++++++ ++ ++++..+.+.+.++++. +
T Consensus 147 g---~~--~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~ 209 (356)
T TIGR00901 147 F---AN--TGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP-------KP-----LTQAVLKPIREFFQRKNMI 209 (356)
T ss_pred c---cc--cccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc-------hh-----HHHHHHHHHHHHHHhcCch
Confidence 0 00 001125999999988877766655555566643211100 00 01111223333344411 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhH
Q 012666 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (458)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 365 (458)
+++.+.+..++...+......+.+.|+.+ ++.++.+ .+........+..+++.++++++.||+|+|+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~---------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l 278 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD--MGFSKEE---------IALVAKINGLLGAILGGLIGGIIMQPLNILYAL 278 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHH---------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 36666666666666666677777877743 3322211 111111122345678889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHH
Q 012666 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVL 445 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 445 (458)
..+.++.++...++.+......+. + . + ..+.+.+....++.+++.+...+...+++.|.+|+ +.+|+++|+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~ 350 (356)
T TIGR00901 279 LLFGIVQALTNAGFVWLASNGHHD---G-I-T-FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP--KFGATQMALL 350 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccc---c-c-c-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--CccHHHHHHH
Confidence 888877777666555432000000 0 0 0 01345566667777888899999999999999999 9999999998
Q ss_pred HHHHH
Q 012666 446 NLAIV 450 (458)
Q Consensus 446 ~~~~~ 450 (458)
+....
T Consensus 351 ~~~~~ 355 (356)
T TIGR00901 351 SSLSA 355 (356)
T ss_pred HHHHh
Confidence 87654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=212.32 Aligned_cols=336 Identities=16% Similarity=0.157 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
++......+...++.+...+.+|.+. +++|.|+.+.|++.+++.+...+.+|+.|+++| |+||||.++.......
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~D----r~g~r~~l~~~~~~~~ 92 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLAD----QYGAKRSALQGMLACG 92 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHH----hhcchHHHHHHHHHHH
Confidence 33444444555556777778888765 789999999999999999999999999999999 9999998877443322
Q ss_pred HHHHH--HHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 112 AVAVL--LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 112 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
+.... .....+ .......+.+++.+.+.|++.+...+...+++.|.+|+++|+ +++++.+.....|
T Consensus 93 ~~~~~~~~~~~~~----------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~a~~~~~~~~~~g 160 (392)
T PRK12382 93 LAGLAYLLAAILP----------VSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSG--KVMSWNGMAMYGA 160 (392)
T ss_pred HHHHHHHhhhccc----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc--hhhhHHHHHHHHH
Confidence 22211 111111 011223477889999999999988888889999999999999 9999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchH
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (458)
..+++.+++...... +|+..+.+..+..++... .....||.++ ++ + ++ .
T Consensus 161 ~~~g~~~~~~l~~~~---------------g~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~-------~-~~--~-- 209 (392)
T PRK12382 161 LAAGAPLGLLLHSHF---------------GFAALALTTMVLPLLAWA-FNGTVRKVPA---HA-------G-ER--P-- 209 (392)
T ss_pred HHHHHHHHHHHHhcc---------------ChHHHHHHHHHHHHHHHH-HHHhccCCCC---Cc-------c-cC--c--
Confidence 999999877643222 787766654433222211 1112222111 00 0 00 0
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHH
Q 012666 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (458)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (458)
..++..+.+.. +.+. .++..........+.+.|+.+. +. ...........++.+++.
T Consensus 210 --~~~~~~~~~~~--~~~~-----~~l~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~~~ 266 (392)
T PRK12382 210 --SLWSVVGLIWK--PGLG-----LALQGVGFAVIGTFVSLYFASK--GW------------AMAGFTLTAFGGAFVLMR 266 (392)
T ss_pred --hHHHHHHHHHH--hHHH-----HHHHHHHHhHHHHHHHHHHHhc--CC------------chhHHHHHHHHHHHHHHH
Confidence 01111221111 1111 1122233333444555555321 11 011123334566677888
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHh
Q 012666 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (458)
Q Consensus 350 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (458)
++.+++.||+|+|+.+..+..+.+++.+++...+ +.+...+...+.|++.+...+...+...|
T Consensus 267 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 329 (392)
T PRK12382 267 VLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP-----------------TAWVALAGAALTGAGCSLIFPALGVEVVK 329 (392)
T ss_pred HHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc-----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999888888887776655542 34455666777888888777777788888
Q ss_pred hhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 430 RTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 430 ~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
..|+ +.+|++.|+++....+++.+++
T Consensus 330 ~~~~--~~~g~~~g~~~~~~~~g~~ig~ 355 (392)
T PRK12382 330 RVPS--QVRGTALGGYAAFQDIAYGVSG 355 (392)
T ss_pred hcCH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 8899999999998888877653
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=213.25 Aligned_cols=343 Identities=15% Similarity=0.147 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-----hHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAW-----ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~-----~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~ 107 (458)
........+...++.....+++|.+.+++|.+..+ .+++.++..+...+++|+.|+++| |+|||+.++. +
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~ 90 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLAD----RKGRKIMLLR-S 90 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhCcHHHHHH-H
Confidence 33344455556667778888999999999988654 488889999999999999999999 9999998877 4
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHH
Q 012666 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (458)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (458)
.+...++..+....+++ +.+++.+.+.|++.+ ..+...+++.|..|+++|+ ++.++......
T Consensus 91 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 152 (408)
T PRK09874 91 ALGMGIVMVLMGLAQNI---------------WQFLILRALLGLLGG-FVPNANALIATQVPRNKSG--WALGTLSTGGV 152 (408)
T ss_pred HHHHHHHHHHHHHHhhH---------------HHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhh--HHHHHHHHHHH
Confidence 44455555555555554 677788888887654 4566778899999999999 99999999999
Q ss_pred HHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccc
Q 012666 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD 267 (458)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (458)
+|..+++.+++.+.... +|++.|++.+++.++..+...++.||++++.+++
T Consensus 153 ~g~~~~~~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 203 (408)
T PRK09874 153 SGALLGPLAGGLLADSY---------------GLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-------------- 203 (408)
T ss_pred HHHHHHHHHHHHHHHHh---------------CHHHHHHHHHHHHHHHHHHHHHHhccCcccccch--------------
Confidence 99999999877643222 8999999988877777776667777654221111
Q ss_pred hHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHH
Q 012666 268 VHEAFLWELFGTFRYFSGTIWI-ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (458)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (458)
++...++..+.+++ ++++. +....+...........+.+.|..+. .+ +.... . ..........++..+
T Consensus 204 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-----~-~~~g~~~~~~~l~~~ 272 (408)
T PRK09874 204 -EMLHMREVVTSLKN--PKLVLSLFVTTLIIQVATGSIAPILTLYVREL-AG-NVSNI-----A-FISGMIASVPGVAAL 272 (408)
T ss_pred -hhhHHHHHHHhCcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cchHH-----H-HHHHHHHHHHHHHHH
Confidence 00112233444555 44433 33333333333333444455554321 11 10000 0 001111222456667
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHh
Q 012666 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (458)
Q Consensus 347 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (458)
++.+..|++.||+|||+.+..+..+..++.+.....+ +.+...+..++.|++.+...+...++
T Consensus 273 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (408)
T PRK09874 273 LSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-----------------TPLQLGILRFLLGAADGALLPAVQTL 335 (408)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 7888899999999999999888777766665554442 34555666777888888888888888
Q ss_pred HHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 427 VSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 427 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+.+..|+ +.+|+.+++.+....+++.++.
T Consensus 336 ~~~~~~~--~~~g~~~~~~~~~~~~g~~~gp 364 (408)
T PRK09874 336 LVYNSSN--QIAGRIFSYNQSFRDIGNVTGP 364 (408)
T ss_pred HHHhCCc--ccceeeehHHHHHHHHHHHhhH
Confidence 8888887 7889999988888888777653
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-26 Score=214.13 Aligned_cols=358 Identities=13% Similarity=0.078 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTP-YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (458)
..+...+.....+....+++|. +.+++|+|+.+.+++.+++.++..+++++.|+++| |+|||+.+++ +.+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~i 79 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVD----KFGPRYTTTL-SLLLLAI 79 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHH----HhCchHHHHH-HHHHHHH
Confidence 3444444445567777888886 66899999999999999999999999999999999 9999998877 4455555
Q ss_pred HHHHHhhcc-ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Q 012666 114 AVLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (458)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (458)
+.+...+.+ ++ +.+++.+.+.|++.+. ..+..+++.|++|+++|+ ++.++.....++|..+
T Consensus 80 ~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~ 141 (366)
T TIGR00886 80 PCLWAGLAVQSY---------------SVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQG--TALGLAAGWGNMGGGV 141 (366)
T ss_pred HHHHHHHHhhhH---------------HHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhh--HHHHHHHHHhHHHHHH
Confidence 556555655 55 7777889888887554 466788999999999999 9999998888888887
Q ss_pred HHhhhccccccccccccccccccccccchhhHH-HHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHH
Q 012666 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAF-FLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (458)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (458)
++.+++.+... ......+....+|++.| ...+++..+..++.....+|.+++++++++.+.++.+.. .++.
T Consensus 142 ~~~i~~~l~~~-----~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 213 (366)
T TIGR00886 142 AQFVMPPIIGS-----LIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWS---VGTG 213 (366)
T ss_pred HHHHHHHHHHH-----HHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccccccccc---ccch
Confidence 77775542110 00000000113799988 444555555555555566665543222111111000000 0111
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHH
Q 012666 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 351 (458)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (458)
..++..+.+++ ++++...+..++.+.....+..+.+.|+.+ .++.++.. .........+..+++.++
T Consensus 214 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~----------~~~~~~~~~~~~~~~~~~ 280 (366)
T TIGR00886 214 ALGDQLKVFRD--RHTWILALLYSVTFGSFLGVSSIFAMFFKD-QFGLSKVT----------AGAYASLGGLLGSLARPL 280 (366)
T ss_pred hHHHHHHHHhc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHHH----------HHHHHHHHHHHHHHHhhc
Confidence 12244556666 667766666666665666666677777743 33333221 122233356667788899
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhh
Q 012666 352 MEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (458)
Q Consensus 352 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (458)
.+++.||+|+|+.+..+......+..++.... ....+.+.......+.++..+...+..+++.++..
T Consensus 281 ~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 347 (366)
T TIGR00886 281 GGAISDRLGGARKLLMSFLGVAMGAFLVVLGL-------------VSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIF 347 (366)
T ss_pred cchHHHhhccchhHHHHHHHHHHHHHHHHhcC-------------CCcchHHHHHHHHHHHHHHhccccchhhhcchhhc
Confidence 99999999999888777666666555554431 10002333334444445555555566677778877
Q ss_pred cccccccchhhhHHHHHHHhh
Q 012666 432 ESLGLGQGLSLGVLNLAIVIP 452 (458)
Q Consensus 432 ~~~~~~~g~~~g~~~~~~~~~ 452 (458)
| +.+|+..|+.+....+|
T Consensus 348 ~---~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 348 R---RATGAVSGLVGAIGNLG 365 (366)
T ss_pred h---hhcccHHHHHHHhccCC
Confidence 6 68999999999887765
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-25 Score=211.79 Aligned_cols=336 Identities=12% Similarity=0.076 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccc
Q 012666 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (458)
Q Consensus 44 ~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~ 123 (458)
.+......+.+|.+.+++|.+..+.++..+.+.++..++.++.|+++| |+||||.++. +.....++......+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~~~~ 100 (406)
T PRK15402 26 YIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSD----RIGRRPVMLA-GVAFFILTCLAILLAQS 100 (406)
T ss_pred HhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHHHHHHHHHHHHHHcc
Confidence 345566667788888999999999999999999999999999999999 9999998777 44445555555556665
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccc
Q 012666 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (458)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (458)
. +.+++.+++.|++.+...+...+.+.|.+|+++|. +..++......+|..+++.+++.....
T Consensus 101 ~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~l~~~ 163 (406)
T PRK15402 101 I---------------EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAI--KITALMANVALLAPLLGPLVGAALIHV 163 (406)
T ss_pred H---------------HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5 67778899999888888888889999999999998 888888888888888998887653222
Q ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Q 012666 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYF 283 (458)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (458)
.+|++.|++.+++.++..+...+..||++++..++ . +.++..++.++.+++
T Consensus 164 ---------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~- 214 (406)
T PRK15402 164 ---------------LPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK---------L----SLKELGRDYKLVLKN- 214 (406)
T ss_pred ---------------cCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc---------c----cHHHHHHHHHHHHcC-
Confidence 28999999888877776666656666654321110 0 012223445566666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChh
Q 012666 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF 363 (458)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 363 (458)
|+++...+...+..........+.+.++.+ .++.++.. .+ .......++.+++.++.+++.||+++|+
T Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~~~~---------~g-~~~~~~~~~~~~g~~~~g~l~~r~~~~~ 282 (406)
T PRK15402 215 -RRFVAGALALGLVSLPLLAWIALSPVILIS-GEQLSSYE---------YG-LLQVPVFGALIAGNLTLARLTSRRPLRS 282 (406)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HhCCCHHH---------HH-HHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 677776665555554444444445555432 22322211 11 1122234556778899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhh
Q 012666 364 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 443 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 443 (458)
.+..+.++..++..++...... ...+.+...+...+.|++.+...+........ .++ +.+|+..+
T Consensus 283 ~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~--~~~g~~~~ 347 (406)
T PRK15402 283 LIRMGLWPMVAGLLLAALATVI------------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSD--VSKGTVSA 347 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hcc--ccccHHHH
Confidence 9888888777777766654211 11134455667777888887776655554433 344 78899999
Q ss_pred HHHHHHHhhhhhcC
Q 012666 444 VLNLAIVIPQVSSC 457 (458)
Q Consensus 444 ~~~~~~~~~~~i~~ 457 (458)
++++...+++.+++
T Consensus 348 ~~~~~~~~~~~~g~ 361 (406)
T PRK15402 348 AMGMLSMLIFTVGI 361 (406)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888887653
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=215.63 Aligned_cols=349 Identities=13% Similarity=0.112 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (458)
........+...+........+|.+.+++|.++.+.+++.++..++..+++++.|+++| |+|||+.+++ +.+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~d----r~g~r~~l~~-~~~~~~ 94 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLAD----KFGRKPLMMW-SIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHHHHH
Confidence 33334444444556666667778888999999999999999999999999999999999 9999998877 444455
Q ss_pred HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Q 012666 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (458)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (458)
++.....++++. +.+++.+++.|++.+...+....++.|++|+++|+ ++.++......+|.++
T Consensus 95 ~~~~~~~~~~~~---------------~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~lg~~~ 157 (426)
T PRK12307 95 VGTGLSGLASGV---------------IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKS--KASAFLVSGFGIGNII 157 (426)
T ss_pred HHHHHHHHHhHH---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhh--HhhhHHHHHHhHHHHH
Confidence 555555566665 78889999999999999999999999999999999 9999999999999999
Q ss_pred HHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHH
Q 012666 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (458)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (458)
++.+.+..... .+||+.|++..+..++ .+......||+++..+++.+.+ + ++.+...+..
T Consensus 158 ~~~l~~~l~~~---------------~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~---~-~~~~~~~~~~ 217 (426)
T PRK12307 158 AAYFMPSFAEA---------------YGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEAKLSGK---G-KHSQSAWSVF 217 (426)
T ss_pred HHHHHHHHccc---------------CCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhhhcc---c-cccccchhhh
Confidence 98776543221 2899999875433322 2222222344332111110000 0 0000011111
Q ss_pred HHHHHHHHhcchHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHH
Q 012666 273 LWELFGTFRYFSGTIWIILIVT---ALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (458)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (458)
..+.++.+++ +.++...... +...........+.+.|+.+ .+.++ ...........++.+++.
T Consensus 218 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~----------~~~~~~~~~~~~~~~~g~ 283 (426)
T PRK12307 218 SLSMKGLFNR--AQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG--EGFDT----------GVVSNLMTAAAFGTVLGN 283 (426)
T ss_pred hHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH----------HHHHHHHHHHHHHHHHHH
Confidence 1233445555 4444332221 22222222345566766642 12211 111222344567788899
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHH--HHhhchhHhH
Q 012666 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA--ITYSVPYALV 427 (458)
Q Consensus 350 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~ 427 (458)
++.+++.||+|||+.+..+.++..+..+...... .. ... .+...+++.+.. ...+....++
T Consensus 284 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 346 (426)
T PRK12307 284 IVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP-------------QD--NYL--LLGACLFGLMATNVGVGGLVPKFL 346 (426)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-------------cc--cHH--HHHHHHHHHHHhcccHhHHHHHHH
Confidence 9999999999999988888777665554443331 11 111 122223333221 1223445678
Q ss_pred HhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 428 SIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 428 ~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
.|.+|+ +.+|+++|+.+....+++.++
T Consensus 347 ~~~~p~--~~~g~~~g~~~~~~~~~~~~g 373 (426)
T PRK12307 347 YDYFPL--EVRGLGTGLIYNLAATSGTFN 373 (426)
T ss_pred HHhCcH--HHHhhhhhHHHHHHhHHHHHH
Confidence 899998 888999998888777777654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=207.61 Aligned_cols=332 Identities=11% Similarity=0.114 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHH
Q 012666 38 SVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (458)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~ 116 (458)
...+....+.+...++++.++ +++|.|+.+.|++.+...+...+.+++.|+++| |+|||+.++. +.....++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~d----r~g~k~~l~~-~~~~~~~~~~ 91 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIAD----RFGAKPMIVT-GMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHH----HhCchHHHHH-HHHHHHHHHH
Confidence 334445566677778888776 789999999999999999999999999999999 9999888777 5455555556
Q ss_pred HHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Q 012666 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (458)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (458)
.....++. +.+.+.+.+.|++.+...++..+++.|.+|+++|+ ++.++.....++|..+|+.+
T Consensus 92 ~~~~~~~~---------------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~g~~ig~~l 154 (400)
T PRK11646 92 TMAIAHEP---------------WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRG--RFFSLLMMQDSAGAVIGALL 154 (400)
T ss_pred HHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 55555554 67778888899988888888899999999999999 99999999999999999999
Q ss_pred hccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHH
Q 012666 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 276 (458)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (458)
++.+. .. +|++.|++.++..++..++..+..||.+..+ + + ++..++.
T Consensus 155 ~g~l~-~~---------------g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~--~-------~--------~~~~~~~ 201 (400)
T PRK11646 155 GSWLL-QY---------------DFRLVCATGAVLFVLAAAFNAWLLPAYKLST--V-------R--------TPVREGM 201 (400)
T ss_pred HHHHH-Hh---------------hHHHHHHHHHHHHHHHHHHHHHhCCcccccc--c-------c--------hhhHHHH
Confidence 88743 22 8999999888776666555555555532110 0 0 0011233
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012666 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (458)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 356 (458)
++.+++ ++++......+...........+.|.|+.+ ..+ ++. ..+ ......++.........+++.
T Consensus 202 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~-~~~---------~~g-~l~~~~~~~~~~~~~~~~~~~ 267 (400)
T PRK11646 202 TRVLRD--KRFVTYVLTLTGYYMLAVQVMLMLPIMVND-IAG-SPS---------AVK-WMYAIEACLSLTLLYPIARWS 267 (400)
T ss_pred HHHHcC--chHHHHHHHHHHHHHHHHHHHHhhhhhHHh-hcC-Cch---------HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 445566 566554444333333323333455666532 211 111 111 112223333444444445555
Q ss_pred -HhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccc
Q 012666 357 -RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (458)
Q Consensus 357 -dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
||++.++.+..+..+.+++.+++...+ +.+...+...+++++.+...+...+++.+.+|+
T Consensus 268 ~~r~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~-- 328 (400)
T PRK11646 268 EKRFRLEHRLMAGLLIMSLSMFPIGMVS-----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADA-- 328 (400)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc--
Confidence 456666666777777777766665543 334445555667778877778888999999998
Q ss_pred cccchhhhHHHHHHHhhhhhcC
Q 012666 436 LGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+.+|+++|+.++...+++.++.
T Consensus 329 ~~~g~~~g~~~~~~~~g~~ig~ 350 (400)
T PRK11646 329 RARGSYMGFSRLGLALGGAIGY 350 (400)
T ss_pred ccchhhhhHHHHHHHHHHHhcc
Confidence 8999999999999998888775
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-25 Score=211.79 Aligned_cols=364 Identities=16% Similarity=0.134 Sum_probs=234.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHH
Q 012666 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (458)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~ 105 (458)
|.+.++.+..++..++.++......++++.|+ +.+|+++.++|.+.++..+..++.+|+.|+++||+++|+||||+++.
T Consensus 4 ~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~ 83 (448)
T PRK09848 4 QLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLL 83 (448)
T ss_pred cccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHH
Confidence 45677788888777777777777777777777 55799999999999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccc-ccchhhhhhHHHHH
Q 012666 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFSL 184 (458)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~ 184 (458)
.+.+...+...+....+.. .......+..++...+.+++.+...++..++..|+.++ ++|. +..++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~--~~~~~r~~ 153 (448)
T PRK09848 84 FGTAPLMIFSVLVFWVPTD--------WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRA--RLGAARGI 153 (448)
T ss_pred HHHHHHHHHHHHHHhCcCC--------CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHH--HHHHHHHH
Confidence 5655444433333222211 11112234445555667888888898999988888866 4566 66666654
Q ss_pred HHH-----HHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc
Q 012666 185 FMA-----VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE 259 (458)
Q Consensus 185 ~~~-----~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 259 (458)
+.+ ++..++|.+++.... ....++.....+.+++..++.++.....||++.++.++
T Consensus 154 ~~~~~~~~~~~~~~p~i~~~~g~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~------ 214 (448)
T PRK09848 154 AASLTFVCLAFLIGPSIKNSSPE-------------EMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ------ 214 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-------------chhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC------
Confidence 433 334444444322100 00001211122223333333334444455543211100
Q ss_pred cccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHH
Q 012666 260 EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLM 339 (458)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
....+++++.++| |+++...+..++.+.+........+.|+ ++.++.++ ..+.+...
T Consensus 215 ----------~~~~~~~~~l~~n--~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~----------~~~~~~~~ 271 (448)
T PRK09848 215 ----------PSLKISLQTLKRN--RPLFMLCIGALCVLISTFAVSASSLFYV-RYVLNDTG----------LFTVLVLV 271 (448)
T ss_pred ----------CCHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHhhhheeeE-eeecCChH----------HHHHHHHH
Confidence 0112234556677 7888887777777766666555545444 34433211 11112222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHH
Q 012666 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (458)
Q Consensus 340 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (458)
...+..+++.++.+++.||+|+|+.+..+.++.+++.+.+.+. +.. +.+...+...+.|++.+..
T Consensus 272 ~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~--------------~~~-~~~~~~~~~~l~g~G~~~~ 336 (448)
T PRK09848 272 QNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV--------------SVW-SLPVALVALAIASIGQGVT 336 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--------------Cch-hHHHHHHHHHHHHHHHHHH
Confidence 2345566788999999999999999999988888877666543 211 3445556677788999999
Q ss_pred hhchhHhHHhhhccc-----ccccchhhhHHHHHHHhhhhhcC
Q 012666 420 YSVPYALVSIRTESL-----GLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 420 ~~~~~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.+...++.+|..|++ +|.+|.+.|++++...+|+.+++
T Consensus 337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~ 379 (448)
T PRK09848 337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGG 379 (448)
T ss_pred HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999998863 24679999999999999988764
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-25 Score=211.85 Aligned_cols=346 Identities=12% Similarity=0.075 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CCchhhH---HHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 38 SVAGGIQFGWALQLSLLTPYVQELG---IPHAWAS---IIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~g---~s~~~~~---~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
+..+...+.........|.+.++++ .+..+.+ .+.+...++..++++++|+++| |+||||.++. +....
T Consensus 29 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~D----r~Grr~~l~~-~~~~~ 103 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIAD----KHGRKKSMLI-SVCMM 103 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHH-HHHHH
Confidence 3344444555665555666667774 4444433 3344555555699999999999 9999998877 55555
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (458)
.++.+...+++++.+ ........+++.|++.|++.+..++...+++.|++|+++|+ ++.++.......|..
T Consensus 104 ~~~~~~~~~~~~~~~-------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg--~~~~~~~~~~~~G~~ 174 (432)
T PRK10406 104 CFGSLVIACLPGYET-------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKG--FYASFQYVTLIGGQL 174 (432)
T ss_pred HHHHHHHhhcCCchh-------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCccc--HHHHHHHHHHHHHHH
Confidence 565566656665410 00122356888999999999999999999999999999999 888888888888888
Q ss_pred HHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHH
Q 012666 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (458)
Q Consensus 192 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (458)
+++.+....... .+ +.. ....+||+.|++.++..++. ++.....||+++.+.++ . + ++
T Consensus 175 ~~~~~~~~~~~~--~~---~~~--~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~~~~-------~--~----~~- 232 (432)
T PRK10406 175 LALLVVVVLQQT--LE---DAE--LREWGWRIPFALGAVLAVVA-LWLRRQLDETSQQETRA-------L--K----EA- 232 (432)
T ss_pred HHHHHHHHHHHh--CC---HHH--HhccchHHHHHHHHHHHHHH-HHHHhcCCCCchHHHhh-------h--c----cc-
Confidence 777664332110 00 000 00138999999877665543 33334455543321100 0 0 01
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHH
Q 012666 272 FLWELFGTFRYFSGTIWIILIVTAL-TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (458)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (458)
.++++.+++ ++.+..++...+ ....+..+..|.+.|+.+. ++.+.. ..........+...++.+
T Consensus 233 --~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-~g~s~~----------~~~~~~~i~~~~~~i~~~ 297 (432)
T PRK10406 233 --GSLKGLWRN--RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-AGMHAN----------VASGIMTAALFVFMLIQP 297 (432)
T ss_pred --ccHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH----------HHHHHHHHHHHHHHHHHH
Confidence 123334455 555555444333 2455666677788877432 222211 111222334455567778
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHHHHHH-HHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHh
Q 012666 351 LMEKLCRKWGAGFIWGISNILMALCFLAMLI-LYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (458)
Q Consensus 351 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (458)
+.|+++||++||+.+..+.++.++....+.. .. ... +.+.......+.....+...+....+.+|
T Consensus 298 ~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 363 (432)
T PRK10406 298 LIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-------------NVS-SPYAAFGLVMCALLIVSFYTSISGILKAE 363 (432)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-------------cCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999877665544333322221 11 000 12222222222222333334456678899
Q ss_pred hhcccccccchhhhHHHHHHH
Q 012666 430 RTESLGLGQGLSLGVLNLAIV 450 (458)
Q Consensus 430 ~~~~~~~~~g~~~g~~~~~~~ 450 (458)
.+|+ +.||+..|+.+....
T Consensus 364 ~fp~--~~r~t~~g~~~~~g~ 382 (432)
T PRK10406 364 MFPA--QVRALGVGLSYAVAN 382 (432)
T ss_pred HCCC--CccchhhhHHHHHHH
Confidence 9999 888888888775433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-25 Score=208.43 Aligned_cols=359 Identities=13% Similarity=0.121 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
++.++...+........+....+..+.+.+ ++|+|+.|.+++.+++.+.+.+..++.|++.| |+|.|+.+.+...
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D----r~G~R~v~~~~~l 108 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP----IFGGRRWTVFSTA 108 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHHHHH
Confidence 344444343433444467777777777765 89999999999999999999999999999999 9999998877444
Q ss_pred HHHHHHHHHHhhc-cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHH
Q 012666 109 ISIAVAVLLIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (458)
Q Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (458)
+ ..+..+...++ ++. ...++.+++.+.+.|++ +..+++....+++++|+++|| ++.|+.....+
T Consensus 109 l-~~i~~~~~~~a~~~~-----------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG--~A~Gi~~g~G~ 173 (462)
T PRK15034 109 I-LIIPCVWLGIAVQNP-----------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG--SALGINGGLGN 173 (462)
T ss_pred H-HHHHHHHHHHHHccc-----------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH--HHHHHHHHHHh
Confidence 4 45555555443 111 11237888999999987 667888899999999999999 99999977777
Q ss_pred HHHHHHHhhhcccccccccccccc---ccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccc
Q 012666 188 VGNILGYATGSFSGWFKILPFTLT---SACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (458)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (458)
+|..+++.+........++..... ........+|+..+++..++.++..++.+++.+|.+.. +
T Consensus 174 ~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-~------------- 239 (462)
T PRK15034 174 LGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-R------------- 239 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-c-------------
Confidence 777666555433110000000000 00000123688888888887777777777765554321 0
Q ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHH
Q 012666 265 SSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
...++..+.+|+ |+.|.+++.+++.+.++..+..+.|.|..+ .+. .. .. .....+..+.
T Consensus 240 ------~~~~~~~~vlk~--~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~----------~~-~~-l~~~~l~~l~ 298 (462)
T PRK15034 240 ------ASIADQLPVLQR--LHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFP----------DV-NI-LRLAFFGPFI 298 (462)
T ss_pred ------cCHHHHHHHhCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC----------hH-HH-HHHHHHHHHH
Confidence 113456678888 889999999988888888888788887643 221 00 00 1112224566
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC--chHHHHHHHHHHHHhhHHHHHhhc
Q 012666 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPP--NGIVIAALIIFTILGGPLAITYSV 422 (458)
Q Consensus 345 ~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~ 422 (458)
..+..+++|+++||+|+++++.++.+...++........ |. ..+.+...+.++...++.|..+..
T Consensus 299 ~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l-------------p~~~~~~~~~~~~~~~~l~~~~G~gngs 365 (462)
T PRK15034 299 GAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL-------------PGTGSGNFIAFYAVFMGLFLTAGLGSGS 365 (462)
T ss_pred HHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh-------------ccccccHHHHHHHHHHHHHHHhcccchH
Confidence 778889999999999999999888877776664433332 21 113444444444444455555555
Q ss_pred hhHhHHhhhcc-------------------cccccchhhhHHHHHHHhhhhh
Q 012666 423 PYALVSIRTES-------------------LGLGQGLSLGVLNLAIVIPQVS 455 (458)
Q Consensus 423 ~~~~~~~~~~~-------------------~~~~~g~~~g~~~~~~~~~~~i 455 (458)
.+.++.+++|+ .+++.|...|+.+....+|.++
T Consensus 366 vfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~ 417 (462)
T PRK15034 366 TFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFF 417 (462)
T ss_pred HHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccch
Confidence 66777777763 0125688888888888887654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=211.81 Aligned_cols=337 Identities=10% Similarity=0.075 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
.+.+....+....+++...+++|.++ +++|++..+.|++.+++.+...+.+++.|+++| |+|||+.+++ +....
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~k~~~~~-~~~~~ 83 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILAD----KFDKKRYMLL-AITAF 83 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCcchhHHH-HHHHH
Confidence 34444555666778888888998887 679999999999999999999999999999999 9999988776 44445
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (458)
.++.+...+.++. +.+++.+.+.+.+.+...+...++..|..|+++|+ ++.++.....++|..
T Consensus 84 ~~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~lg~~ 146 (395)
T PRK10054 84 ASGFIAIPLVNNV---------------TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKT--KIFSLNYTMLNIGWT 146 (395)
T ss_pred HHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHH--HHHHHHHHHHHHHHH
Confidence 5555556566554 55566666777776777777889999999999999 999999999999999
Q ss_pred HHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHH
Q 012666 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (458)
Q Consensus 192 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (458)
+++.+++.+.. .+|+..|.+.+++.++..++..+.+||++++++++ + + +
T Consensus 147 igp~l~~~l~~----------------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-------~-~-----~-- 195 (395)
T PRK10054 147 VGPPLGTLLVM----------------QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-------T-G-----S-- 195 (395)
T ss_pred HHHHHHHHHHH----------------hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-------h-h-----h--
Confidence 99999876421 17888999888777666555555565543221110 0 0 0
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHH--HHHHHHHHHHHHHH
Q 012666 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGA--LGLMLNSVVLGITS 349 (458)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 349 (458)
..+.++.+++ |+++...+..++.......+..+.+.|+.. ..+ .+.+... .....+++......
T Consensus 196 -~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~g~~~~~~~~~~~~~~ 261 (395)
T PRK10054 196 -VWSPSVLLQD--KALLWFTCSGFLASFVSGAFASCISQYVMV-VAD----------SDFAEKVVAVVLPVNAAMVVSLQ 261 (395)
T ss_pred -hhhhhhhccC--ceehHHHHHHHHHHHHHHHhhhhHHHHHHH-hcc----------cchHHHHHHHHHHhhhhheeeeh
Confidence 0112344566 777777666666555544444445554421 111 0111111 22223444445556
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHh
Q 012666 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (458)
Q Consensus 350 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (458)
...+++.||.++|+.+..+..+.+++...+.... + +.+...+...+++++.+...+..++++.+
T Consensus 262 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 325 (395)
T PRK10054 262 YSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG--------------N--SLLLWGMSAAVFTVGEIIYAPGEYMLIDH 325 (395)
T ss_pred hHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc--------------h--HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7889999999999998888877777776665431 0 34445566778888887777788889999
Q ss_pred hhcccccccchhhhHHHHHHHhhhhh
Q 012666 430 RTESLGLGQGLSLGVLNLAIVIPQVS 455 (458)
Q Consensus 430 ~~~~~~~~~g~~~g~~~~~~~~~~~i 455 (458)
..|+ +.+|++.+..+ ...+|..+
T Consensus 326 ~~p~--~~~~~~~~~~~-~~~~G~~~ 348 (395)
T PRK10054 326 IAPP--GMKASYFSAQS-LGWLGAAI 348 (395)
T ss_pred hCCc--ccceehHhHHH-HHHHHHHH
Confidence 9998 77888888665 33344433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-25 Score=216.30 Aligned_cols=363 Identities=9% Similarity=0.067 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hHH-----HHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAW-ASI-----IWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~-~~~-----~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
...+..+...+.........|.+.++++.+... .++ ..++..++..++++++|+++| |+|||+++++ +.
T Consensus 20 ~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~D----r~Grr~~l~~-~~ 94 (490)
T PRK10642 20 AASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGD----KYGRQKILAI-TI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccHHHHHH-HH
Confidence 334455555566666666777666777543322 122 146677888999999999999 9999998887 55
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
++..++.++.++++++.+. ......++++.|++.|++.+..++...+++.|++|+++|+ ++.++...+..+
T Consensus 95 ~l~~i~~~~~a~~~~~~~~-------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg--~~~~~~~~~~~~ 165 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATI-------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG--FMGSWLDFGSIA 165 (490)
T ss_pred HHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCc--HHHHHHHHHHHH
Confidence 5566666666677775110 0011124789999999999999999999999999999999 999998888888
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccch
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (458)
|..+++.+....... ..+... ...+||+.|++.+++.++ .++....+||+|+...++.+.++++++.. .+.
T Consensus 166 G~~lg~~~~~~~~~~-~~~~~~------~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~-~~~ 236 (490)
T PRK10642 166 GFVLGAGVVVLISTI-VGEANF------LDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQGDREGL-QDG 236 (490)
T ss_pred HHHHHHHHHHHHHHh-cCHHHh------cCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhhccccc-ccc
Confidence 888877654331100 000000 013899999987755443 34445567887653211110000000000 000
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHH
Q 012666 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (458)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (458)
++..+++ .+++.++.+.......++....++....|.+.|+.+. ++.+. ...........++.+++
T Consensus 237 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~----------~~~~~~~~~~~~~~~~~ 302 (490)
T PRK10642 237 PKVSFKE---IATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-LHYSE----------DHGVLIIIAIMIGMLFV 302 (490)
T ss_pred ccCCHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHH
Confidence 1111222 2222112333222333334455666667788877432 22221 11122233345667788
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHH-HHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhH
Q 012666 349 SVLMEKLCRKWGAGFIWGISNILMALCFLA-MLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427 (458)
Q Consensus 349 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (458)
.++.|+++||+|||+.+..+.++..++... +.... .. +...+++...+.+++.+........+.
T Consensus 303 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~g~~~~~~~g~~~~~~ 367 (490)
T PRK10642 303 QPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN-------------SN--VIGLIFAGLLMLAVILNCFTGVMASTL 367 (490)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-------------CC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999887776544333222 22221 11 233344455556666665556667788
Q ss_pred HhhhcccccccchhhhH-HHHHHHh
Q 012666 428 SIRTESLGLGQGLSLGV-LNLAIVI 451 (458)
Q Consensus 428 ~~~~~~~~~~~g~~~g~-~~~~~~~ 451 (458)
.|.+|+ +.||+.+|+ +|+....
T Consensus 368 ~~~~p~--~~Rg~~~g~~~~~~~~~ 390 (490)
T PRK10642 368 PAMFPT--HIRYSALAAAFNISVLV 390 (490)
T ss_pred HHHCCC--ccchHHHHHHHHHHHHH
Confidence 899999 888888886 5554433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-25 Score=209.23 Aligned_cols=281 Identities=16% Similarity=0.200 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (458)
++......+..........+.+|.+.+++|.+..+.+++.+...++..+++++.|+++| |+|||+.+.. +.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~ 79 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSS----RYSLKHILLF-LVALCV 79 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHc----cCccHHHHHH-HHHHHH
Confidence 44555555666666677788999999999999999999999999999999999999999 9999998877 545556
Q ss_pred HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Q 012666 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (458)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (458)
++.++..+++++ +.+++.+++.|++.+...+...+++.|++|+++|+ ++++.......+|..+
T Consensus 80 ~~~~l~~~~~~~---------------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~ 142 (382)
T PRK10091 80 IGNAMFTLSSSY---------------LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVT--AAVAGMVSGMTVANLL 142 (382)
T ss_pred HHHHHHHHhCcH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhh--HHHHHHHHHHHHHHHH
Confidence 666666677776 88888999999998888888888999999999999 8999999999999999
Q ss_pred HHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHH
Q 012666 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (458)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (458)
++.+++...... +||+.|.+.+++..+..+...+..||.+++++. +.++
T Consensus 143 g~~l~~~l~~~~---------------gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~---------------~~~~- 191 (382)
T PRK10091 143 GIPLGTYLSQEF---------------SWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG---------------GLRE- 191 (382)
T ss_pred hccHHHHHhhhc---------------cHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc---------------CHHH-
Confidence 988877643222 899999998887766666556667775321100 0111
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHH
Q 012666 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 352 (458)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (458)
..+.+++ ++.+......++...+.+....|.++++. +.++.++. ..........++.+++.++.
T Consensus 192 ---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~----------~~~~~~~~~~~~~~ig~~~~ 255 (382)
T PRK10091 192 ---QFHFLRS--PAPWLIFAATMFGNAGVFAWFSYIKPYMM-FISGFSET----------SMTFIMMLVGLGMVLGNLLS 255 (382)
T ss_pred ---HHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCHH----------HHHHHHHHHHHHHHHHhHHH
Confidence 1234455 45555544444444444444445555553 22232221 12233444677788999999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHHHH
Q 012666 353 EKLCRKWGAGFIWGISNILMALCFLAMLIL 382 (458)
Q Consensus 353 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 382 (458)
+++.||+|+|+.+..+..+.+++.+++...
T Consensus 256 g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~ 285 (382)
T PRK10091 256 GRLSGRYSPLRIAAVTDFIIVLALLMLFFF 285 (382)
T ss_pred heeccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888877777655443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=217.01 Aligned_cols=349 Identities=11% Similarity=0.049 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHH
Q 012666 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (458)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (458)
..+...+......+++|.+.+++|++..+.+++.+.+.++..+++++.|+++| |+|||+.+.. +.+...++.++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~G~r~~~~~-~~~~~~~~~~~~ 118 (476)
T PLN00028 44 SFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCD----LYGPRYGSAF-LLMLTAPAVFCM 118 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHHHHHHHHHHH
Confidence 33333444555667788888999999999999999999999999999999999 9999988776 445555555555
Q ss_pred hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhc
Q 012666 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (458)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (458)
.++++. +.+++.+++.|++.+.. .+...++.|++|+++|+ +++++.....++|..+++.+.+
T Consensus 119 ~~~~s~---------------~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg--~a~g~~~~~~~~g~~~~~~~~~ 180 (476)
T PLN00028 119 SLVSSA---------------TGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVG--TANGIAAGWGNLGGGVTQLLMP 180 (476)
T ss_pred HHhcCH---------------HHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhhee--HHHHHHHHHHHHHHHHHHHHHH
Confidence 566555 66677888888887754 34566889999999999 9999998887888877766643
Q ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHH
Q 012666 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFG 278 (458)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (458)
.... ..... ......+||+.|++.+++.++..++.+++.++.|+...++ .+++.+.+ +++..+.+++
T Consensus 181 ~i~~-----~~~~~-~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~----~~~~~~~~---~~~~~~~~~~ 247 (476)
T PLN00028 181 LVFP-----LIKDA-GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRE----LKKSGTMP---KDSFSKVLRY 247 (476)
T ss_pred HHHH-----HHHhc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhh----HHhcCccc---cccHHHHHHH
Confidence 3110 00000 0001128999999999887777666655554444321110 00000000 1111233445
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012666 279 TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 358 (458)
.+++ +++|.+.+..++.......+..+.+.|+.+ .++.++. ..........++.+++.++.|+++||
T Consensus 248 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~----------~a~~~~~~~~~~~~ig~~~~G~lsDr 314 (476)
T PLN00028 248 GVTN--YRTWILALTYGYSFGVELTMDNIIAEYFYD-RFGLSLE----------TAGAIAASFGLMNLFARPAGGYLSDV 314 (476)
T ss_pred HHcC--chhHHHHHHHHHHHHHHHHHHhHHHHHHHH-hcCCCHH----------HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5566 666766655554444444555566776632 2332221 11233334577788999999999999
Q ss_pred hcChh-------hHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhh
Q 012666 359 WGAGF-------IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (458)
Q Consensus 359 ~g~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (458)
++||+ ......++.+++.+++.... +.+...+.+++++++.+...+..+++..+..
T Consensus 315 ~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (476)
T PLN00028 315 AARRFGMRGRLWALWIVQTLGGVFCIWLGRAN-----------------SLGAAIVVMILFSIFVQAACGATFGIVPFVS 377 (476)
T ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHhcccc-----------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccC
Confidence 98652 22222222222222222221 2333344455556655555555666666654
Q ss_pred cccccccchhhhHHHHHHHhhhhhc
Q 012666 432 ESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 432 ~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
| +.+|+..|+.+....++..++
T Consensus 378 ~---~~~g~~~g~~~~~g~lg~~i~ 399 (476)
T PLN00028 378 R---RSLGVISGLTGAGGNVGAVLT 399 (476)
T ss_pred h---hhchhhhhhhhccccHHHHHH
Confidence 4 678999999988887777664
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=215.09 Aligned_cols=342 Identities=12% Similarity=0.070 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccC
Q 012666 50 QLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (458)
Q Consensus 50 ~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (458)
....+|.+.++ |+++.+.+++.+...++..+++++.|+++| |+|||+.++.+.. ...++.+...+.+..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~D----r~g~k~~l~~~~~-~~~i~~~~~~~~~~~----- 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPAGLI-LAAAVMLFMGFVPWA----- 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhh----ccCCchhHHHHHH-HHHHHHHHHHhhhcc-----
Confidence 34456665666 999999999999999999999999999999 9999998877444 444444444443211
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHH-HHHhhhccccccccccc
Q 012666 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI-LGYATGSFSGWFKILPF 208 (458)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~-ig~~~~~~~~~~~~~~~ 208 (458)
....+.+++.+.+.|++.+...+.....+.|++|+++|+ +++++.+....+|.. .++..+....+.
T Consensus 117 ------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~l~~~~~~~~----- 183 (452)
T PRK11273 117 ------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGGGLPPLLFLLGMAWF----- 183 (452)
T ss_pred ------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHh-----
Confidence 112356777888889988888888888899999999999 999999998888864 444432221111
Q ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCC---CCccccccccchHHHHHHHH-H-HHHhcc
Q 012666 209 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP---FSEEGHEQSSDVHEAFLWEL-F-GTFRYF 283 (458)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 283 (458)
.+||+.|++.+++.++..++..+++||++++...++++ ++.+++.++.+.++...++. . ..+++
T Consensus 184 ----------~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (452)
T PRK11273 184 ----------NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPN- 252 (452)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcC-
Confidence 28999999988877777777777778776532111100 00000000000000011121 1 23455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh--cC
Q 012666 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW--GA 361 (458)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~ 361 (458)
+.+|...+..++..........|.|.|+.++ ++.+.. ..........++.+++.++.|+++||+ +|
T Consensus 253 -~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-~g~s~~----------~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r 320 (452)
T PRK11273 253 -KLLWYIAIANVFVYLLRYGILDWSPTYLKEV-KHFALD----------KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN 320 (452)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 7888887777777777677778889888533 222221 112223345677778899999999999 44
Q ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccch
Q 012666 362 GFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGL 440 (458)
Q Consensus 362 r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 440 (458)
|... .....+..++.+.+... +.. +.+...+...+.|............+..|.+|+ +.+|+
T Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~ 383 (452)
T PRK11273 321 RGATGVFFMTLVTIATIVYWLN--------------PAG-NPTVDMACMIVIGFLIYGPVMLIGLHALELAPK--KAAGT 383 (452)
T ss_pred cchHHHHHHHHHHHHHHHHHHh--------------ccc-ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh--hhhhh
Confidence 4432 22223333333332221 110 122223333334433222222334567799998 88999
Q ss_pred hhhHHHHHHHhhhhh
Q 012666 441 SLGVLNLAIVIPQVS 455 (458)
Q Consensus 441 ~~g~~~~~~~~~~~i 455 (458)
+.|+.+....++..+
T Consensus 384 ~~g~~~~~~~~g~~~ 398 (452)
T PRK11273 384 AAGFTGLFGYLGGSV 398 (452)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998877776543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-24 Score=205.74 Aligned_cols=331 Identities=16% Similarity=0.077 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhh
Q 012666 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (458)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~ 120 (458)
+....+.......+|.+.+++|.++.+.++..+.+.++..+++++.|+++| |+|||+.++. +.+...++......
T Consensus 13 ~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D----r~g~r~~l~~-~~~~~~i~~~~~~~ 87 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIAD----RSGRKPVAIP-GAALFIIASLLCSL 87 (392)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHH----HhCChHHHHH-HHHHHHHHHHHHHH
Confidence 333456667778899999999999999999999999999999999999999 9999988776 44445555555555
Q ss_pred ccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
.++. +.+++.+.+.|++.+...+...+++.|.+|+++|+ ++.++.+....+|..+++.+++..
T Consensus 88 ~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 88 AETS---------------SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRA--KVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred hCcH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 66778888999998888888999999999999999 999999999999999998887653
Q ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHH
Q 012666 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTF 280 (458)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (458)
... .+|++.|++.+++.++..++..+..||++++++++ + ++..++.++.+
T Consensus 151 ~~~---------------~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~~ 200 (392)
T PRK10473 151 MLK---------------FPWQSLFYTMAAMGILVLLLSLFILKETRPARAPA-------A--------SSKPRENSESL 200 (392)
T ss_pred HhC---------------cChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC-------c--------cchHHHHHHHH
Confidence 222 28999999988877777777767777764322110 0 00112233455
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012666 281 RYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360 (458)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 360 (458)
++ ++++...+...+.......+..+.+.++. +.++.++ ...........+..+++.++.+++.||+|
T Consensus 201 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~----------~~~~~~~~~~~~~~i~~~~~~~~l~~r~g 267 (392)
T PRK10473 201 LN--RFFLSRLVITTLSVTVILTFVNTSPVLLM-EQMGFSR----------GEYAIIMALTAGVSMTVSFSTPFALGIFK 267 (392)
T ss_pred hC--HHHHHHHHHHHHHHHHHHHHHHhCHHHHH-HHcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56 55555444444443333344444444442 2222221 11122233457777888999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccch
Q 012666 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGL 440 (458)
Q Consensus 361 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 440 (458)
+|+.+..+..+..++.+.+.... ..........+.+.+.+...+. ....+..|.+ ++.|.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~-~~~g~ 327 (392)
T PRK10473 268 PRTLMLTSQVLFLAAGITLALSP-----------------SHAVSLFGITLICAGFSVGFGV--AMSQALGPFS-LRAGV 327 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCc-ccccH
Confidence 99999888888777777666553 1222333334444444443332 2334444542 44577
Q ss_pred hhhHHHHHHHhhhhhc
Q 012666 441 SLGVLNLAIVIPQVSS 456 (458)
Q Consensus 441 ~~g~~~~~~~~~~~i~ 456 (458)
+.++.++...++..++
T Consensus 328 ~~~~~~~~~~~g~~~~ 343 (392)
T PRK10473 328 ASSTLGIAQVCGSSLW 343 (392)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8787777776666554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-24 Score=205.54 Aligned_cols=348 Identities=15% Similarity=0.092 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (458)
+.......+...++......+++++.+++|.++.+.+++.+.+.++..++.++.|+++| |+||||.++....+..+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d----r~g~k~~l~~~~~~~~~ 90 (402)
T TIGR00897 15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAE----IIGPLKTMMIGLLLWCV 90 (402)
T ss_pred hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHH----HcCcHHHHHHHHHHHHH
Confidence 33344444445556666667888999999999999999999999999999999999999 99999988875544433
Q ss_pred HHHHHHh--hc-cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 113 VAVLLIG--LS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 113 ~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
....... .. ++ .+.+++.+.+.|++.+...+...+.+.|.+|+++|+ +++|+.....++|
T Consensus 91 ~~~~~~~~~~~~~~---------------~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g 153 (402)
T TIGR00897 91 GHAAFIVFGLGHAN---------------YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLS--SAVGWFWAVYSIG 153 (402)
T ss_pred HHHHHHHHhccCcc---------------HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHH--HHHHHHHHHHHHH
Confidence 3322211 11 22 256667888888888877777788889999999999 9999999999999
Q ss_pred H-HHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccch
Q 012666 190 N-ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (458)
Q Consensus 190 ~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (458)
. .+++.+++.+.... +|+..++.......+..++..+..+|.+++++++ + +++
T Consensus 154 ~~~~g~~~~~~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~---- 207 (402)
T TIGR00897 154 IGVFGSYYSSYAIPAF---------------GEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ----T---REK---- 207 (402)
T ss_pred HHHHHHHHHHhccccc---------------chHHHHHHHHHHHHHHHHHHHhccCCCCCccccc----C---Ccc----
Confidence 6 57888776532211 4444444333333333334444455432211110 0 000
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHH
Q 012666 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (458)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (458)
.++..++.+..+++ |.++...+..++..........|.|.|+.+ ++.++.. .........++..++
T Consensus 208 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~~----------~~~~~~~~~~~~~ig 273 (402)
T TIGR00897 208 FSELGKAATILFTN--PNVLLGGMVRIINTIGLFGFAVFLPMFVAE--LGFSTSE----------WLQIWGTFFFTNIVF 273 (402)
T ss_pred hhhHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCChhH----------HHHHHHHHHHHHHHH
Confidence 11112233445566 778877777777666777777788887742 3333221 112223356778899
Q ss_pred HHHHHHHHHhhcChhhHH-HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhH
Q 012666 349 SVLMEKLCRKWGAGFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427 (458)
Q Consensus 349 ~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (458)
.+..|+++||+|||+.+. .+.+..+++.+.+..... ....+.+...+...+.|++.+...+ .....
T Consensus 274 ~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~------------~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~ 340 (402)
T TIGR00897 274 NVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ------------HFGHSFAVALIIAIALGIFLAGYVP-LAAVF 340 (402)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH------------ccCCcHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999888763 333333333333322210 0001344455666777777665544 34455
Q ss_pred HhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 428 SIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 428 ~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.|. ++ +.+|++.|+.|....+++.+++
T Consensus 341 ~~~-~~--~~~g~~~g~~~~~~~lg~~~gp 367 (402)
T TIGR00897 341 PTL-AP--KHKGAAMSVLNLSAGLSAFLAP 367 (402)
T ss_pred Hhh-Cc--chhHHHHHHHHHHHHHHHHHHH
Confidence 564 44 5689999999999999887653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=208.86 Aligned_cols=350 Identities=12% Similarity=0.068 Sum_probs=229.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
....+..+...++...+........+|.+.+++|.|+.+.+++.+.+.++..+++++.|+++| |+||||.++.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~d----r~G~r~~l~~g~- 98 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIITGL- 98 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHH-
Confidence 344455556666666677777888899999999999999999999999999999999999999 999999888744
Q ss_pred HHHHHHHHHH---hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHH
Q 012666 109 ISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (458)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (458)
....++.++. ..++++ +.+++.+++.|++.+...+..+.++.|..|+++|. ..++..+..
T Consensus 99 ~~~~~~~~l~~~~~~a~~~---------------~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~--~~~s~~~~~ 161 (438)
T PRK10133 99 FLYALGAALFWPAAEIMNY---------------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQTF 161 (438)
T ss_pred HHHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHH--HHHHHHHHH
Confidence 4444554433 234554 78889999999999999999999999987777666 678889999
Q ss_pred HHHHHHHHHhhhccccccccccccc---------cc-ccc--ccccchhhHHHHHHHHHH-HHHHHHHhccccCCCCCCC
Q 012666 186 MAVGNILGYATGSFSGWFKILPFTL---------TS-ACN--VDCANLKSAFFLDVIFIA-ITTCISASAAHEVPLGSHD 252 (458)
Q Consensus 186 ~~~g~~ig~~~~~~~~~~~~~~~~~---------~~-~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~ 252 (458)
..+|..+++.+++...... .|... .. ... ....+||+.|+....+.. +..++.....||.+.+ +
T Consensus 162 ~~~G~~~g~~~g~~l~~~~-~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~--~ 238 (438)
T PRK10133 162 NSFGAIIAVVFGQSLILSN-VPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--N 238 (438)
T ss_pred HHHHHHHHHHHHHHHHhcC-CcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--c
Confidence 9999999998876421000 01000 00 000 000256777764443332 3222223333432111 0
Q ss_pred CCCCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccch
Q 012666 253 QSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVR 332 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
+ + +++ ..+..++.++.+++ |.++...+..++..........|.+.|+.++.++.++..
T Consensus 239 ~----~-~~~------~~~~~~~~~~ll~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~--------- 296 (438)
T PRK10133 239 H----S-DAK------QGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF--------- 296 (438)
T ss_pred c----c-ccc------ccchhhhHHHHHhC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHH---------
Confidence 0 0 000 01112233455666 666665555555555555555667766533444433322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHH
Q 012666 333 MGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTIL 412 (458)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (458)
.........++.++++++.+++.||+|+|+++..+..+.++.+++..+. +. . .....+.+.
T Consensus 297 -ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--------------~~---~-~~~~~~~l~ 357 (438)
T PRK10133 297 -AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--------------GG---H-VGLIALTLC 357 (438)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--------------CC---h-HHHHHHHHH
Confidence 2344555677888999999999999999999888777666555544433 22 1 234557778
Q ss_pred hhHHHHHhhchhHhHHhhhcccccccchhhhHHHH
Q 012666 413 GGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 447 (458)
Q Consensus 413 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 447 (458)
|++.+..+|..++...+..|+ +.+.+.++...
T Consensus 358 glg~~~i~P~~~s~a~~~~~~---~~~~as~l~~~ 389 (438)
T PRK10133 358 SAFMSIQYPTIFSLGIKNLGQ---DTKYGSSFIVM 389 (438)
T ss_pred HHHHHHHHHHHHHHHHcccch---hhccchhHHhH
Confidence 999999999999999998775 35566666543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=203.73 Aligned_cols=346 Identities=14% Similarity=0.069 Sum_probs=227.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
+++.++..........+......+.+|.+.+++|.|+.+.+++.+++.++..+++++.|+++| |+||||.++. +.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D----r~grr~~~~~-~~ 80 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSD----RVGRRPVILV-GM 80 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH----hcCChHHHHH-HH
Confidence 344444444444444556667777888899999999999999999999999999999999999 9999998877 44
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
....++.......+++ +.+++.+.+.|++.+...+....+..|..++++++ ++.+.......+
T Consensus 81 ~~~~~~~~~~~~~~~~---------------~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 143 (394)
T PRK11652 81 SIFILGTLVALFAHSL---------------TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLR--HANSLLNMGILV 143 (394)
T ss_pred HHHHHHHHHHHHHccH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHH
Confidence 4455555555555555 77788899999888877777788899999988999 899999999999
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccch
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (458)
+..+++.+++...... +|++.|++.++..++..++..++.||+++.++++
T Consensus 144 ~~~~g~~i~~~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 193 (394)
T PRK11652 144 SPLLAPLIGGLLTTLF---------------GWRACYLFLLLLGAGVTFSMARWMPETRPADARR--------------- 193 (394)
T ss_pred HHHHHHHHHHHHHhcc---------------ChHHHHHHHHHHHHHHHHHHHHhCCccCccccch---------------
Confidence 9999998877643222 8999999888776666555556677754321110
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHH
Q 012666 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (458)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (458)
++..+++++.+++ ++++..++..+....+...+..+.+.++. +.++.++. ...+......++.+++
T Consensus 194 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~----------~~~~~~~~~~~~~~~g 259 (394)
T PRK11652 194 -TRVLASYRTLLSN--RRFNCYLLMLIGTLAGIAVFEACSGVLMG-AVLGLSSM----------TVSILFILPIPAAFFG 259 (394)
T ss_pred -hHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHhChHHHH-HHcCCCHH----------HHHHHHHHHHHHHHHH
Confidence 1122344455566 66666555444444444444444555553 22222221 1112223345566677
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHH
Q 012666 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (458)
Q Consensus 349 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (458)
+.+.+++.||.+++... +.....++.+....... ....+.+.......+.+++.+...+...+...
T Consensus 260 ~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 325 (394)
T PRK11652 260 AWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGW------------FGVMNVWTLLVPAALFFFGAGMLFPLATSGAM 325 (394)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH------------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888733222 22222222222211110 00012345566677788888888888888888
Q ss_pred hhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 429 IRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 429 ~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
|..| +.+|+..++.+....++..+++
T Consensus 326 ~~~~---~~~g~~~~~~~~~~~lg~~~~~ 351 (394)
T PRK11652 326 EPFP---YLAGTAGALLGGLQNIGSGLAA 351 (394)
T ss_pred hhcc---ccchHHHHHHHHHHHHHHHHHH
Confidence 8876 5678999999888888877653
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=204.78 Aligned_cols=327 Identities=14% Similarity=0.154 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
++.....+.+|.+.+++|+|+.+.+++.+++.++..++.++.|+++| |+|||+.+.. +.+...++.......++.
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~-~~~~~~i~~~~~~~~~~~ 79 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMAD----SFGRKPVILG-GTLVFALAAVACALAQTI 79 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHh----hcCChHHHHH-HHHHHHHHHHHHHHHccH
Confidence 34566678899999999999999999999999999999999999999 9999888776 545555555555566655
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccc
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (458)
+.+.+.+++.|++.+...+...+++.|++|+++|+ ++.++......+|..+++.+++......
T Consensus 80 ---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 142 (377)
T PRK11102 80 ---------------DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFS--RMMSFVTLVMTIAPLLAPIIGGWLLVWF 142 (377)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67778889999999988889999999999999999 9999999999999999999877633222
Q ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcch
Q 012666 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS 284 (458)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (458)
+|++.|++.+++.++..++..+..||++++++++ + .+.++..++.++.+++
T Consensus 143 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~-- 193 (377)
T PRK11102 143 ---------------SWHAIFWVLALAAILAAALVFFFIPETLPKERRQ-------P-----FHLRTTIRNFASLFRH-- 193 (377)
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHHHHhCCccCcccccC-------C-----CChHHHHHHHHHHHcC--
Confidence 8999999888877777666667777754322111 0 0011223344556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhh
Q 012666 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (458)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 364 (458)
+.++..++..++...+...+..+.+.++. +.++.++. ..........+..+++.++.+++.||+|+|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~----------~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 262 (377)
T PRK11102 194 KRVLGYMLASGFSFAGMFSFLTAGPFVYI-ELNGVSPQ----------NFGYYFALNIVFLFVMTIINSRFVRRVGALNM 262 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHH-HHhCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 66666655555555555555555555443 22222221 11223334677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhH
Q 012666 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (458)
+..+..+..+..+.+...... +. ..+...+...+.+.+.+.........+.|..| +.+|...++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~ 326 (377)
T PRK11102 263 LRFGLWIQFIMGIWLVVSALL-----------DL--GFWALVVGVAAFVGCVSMISSNAMAVILDEFP---HMAGTASSL 326 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------hh--hHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc---ccchHHHHH
Confidence 887776544433333222100 00 22333333334444444444444455566544 567888887
Q ss_pred HHHHH
Q 012666 445 LNLAI 449 (458)
Q Consensus 445 ~~~~~ 449 (458)
.+...
T Consensus 327 ~~~~~ 331 (377)
T PRK11102 327 AGTLR 331 (377)
T ss_pred HHHHH
Confidence 76543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=217.35 Aligned_cols=376 Identities=14% Similarity=0.095 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHH
Q 012666 36 VASVAGGIQFGWALQLSLLTPYVQEL--------GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~ 107 (458)
.++..+...+......+..+.+.+++ +.++.+.+++.+++.++..+++++.|+++| |+||||++++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~d----r~Grr~~~~~~~ 92 (479)
T PRK10077 17 ATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKIAA 92 (479)
T ss_pred HHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHH
Confidence 33333333444444555555555554 888899999999999999999999999999 999999988855
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHH
Q 012666 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (458)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (458)
.+ ..++.+...++..... ............+++.|++.|++.+...+...+++.|++|+++|+ +++++.+....
T Consensus 93 ~l-~~i~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg--~~~~~~~~~~~ 166 (479)
T PRK10077 93 VL-FFISALGSAWPEFGFT---SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRG--KLVSFNQFAII 166 (479)
T ss_pred HH-HHHHHHHHHhhccccc---cccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhh--HHHHHHHHHHH
Confidence 44 4444443333210000 000112233466789999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc---cccc
Q 012666 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE---GHEQ 264 (458)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~ 264 (458)
+|..+++.+++...... .+... ...+||+.|++.++..++..+ ..+++||+|+...++.+.++.+ ++..
T Consensus 167 ~G~~~~~~~~~~~~~~~-~~~~~------~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~~~l~~~~~~~~~~~~~~~~~ 238 (479)
T PRK10077 167 FGQLVVYFVNYFIARSG-DASWL------NTDGWRYMFASEAIPALLFLM-LLYFVPETPRYLMSRGKQEQAEGILRKIM 238 (479)
T ss_pred HHHHHHHHHHHHHhccC-ccccc------ccCChHHHHHHHHHHHHHHHH-HHHcCCCCcHHHHHcCCHHHHHHHHHHHc
Confidence 99998877765421100 00000 113899999988776666544 4567888865321111111100 0000
Q ss_pred ccchHHHHHHHHHHHHhc---chHHHHHHHHHHHH---------HHHHHHHHHHhhhhhhhceeccCCCcccccccccch
Q 012666 265 SSDVHEAFLWELFGTFRY---FSGTIWIILIVTAL---------TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVR 332 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
...+.+...++..+..++ ..+..+......+. ...+......|.+.+.. + .+.+. .
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~-~g~~~----------~ 306 (479)
T PRK10077 239 GNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK-T-LGAST----------D 306 (479)
T ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH-H-cCCCC----------c
Confidence 000011111222222211 00111111000000 01111122223343332 1 22111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHH
Q 012666 333 MGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTIL 412 (458)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (458)
.........++..+++.++.+++.||+|||+++..+.++.+++.+++..... +.. ..........++
T Consensus 307 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~------------~~~-~~~~~~~~~~~~ 373 (479)
T PRK10077 307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------------TQA-PGIVALLSMLFY 373 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh------------cCc-ccHHHHHHHHHH
Confidence 1123333456677888999999999999999999999988888877765420 010 112233344444
Q ss_pred hhHHHHH-hhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 413 GGPLAIT-YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 413 g~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+.+++.. .+..+.+++|.+|+ +.||++.|+.+....++++++
T Consensus 374 ~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~ 416 (479)
T PRK10077 374 VAAFAMSWGPVCWVLLSEIFPN--AIRGKALAIAVAAQWIANYFV 416 (479)
T ss_pred HHHHhccccchhHHHhHhhCCh--hHHHHHHHHHHHHHHHHHHHH
Confidence 5555433 25678999999998 889999999988888887764
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=204.32 Aligned_cols=334 Identities=9% Similarity=-0.035 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH-HHH
Q 012666 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI-AVA 114 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~-~~~ 114 (458)
+....+.....+....+++|.+++++|.|..++|++.+++.+...+.++++|.++| |+|||+.......... ...
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIK----DANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHH
Confidence 34445555567788889999999999999999999999999999999999999999 8887543322111111 111
Q ss_pred HHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHH
Q 012666 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (458)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (458)
......++++ +.+++.+.+.+.+.+...+...++..|. +++|+ +..+......++|.++++
T Consensus 85 ~~~~~~~~~~---------------~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~--~~~g~~~~~~slG~~~g~ 145 (382)
T TIGR00902 85 AAFSAGAHNA---------------WLLFIAIGLFALFFSAGMPIGDALANTW--QKQFG--LDYGKVRLIGSAAFIIGS 145 (382)
T ss_pred HHHHHhhhhH---------------HHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcC--CCccHHHHHHHHHHHHHH
Confidence 1222233444 7777788888888887788888887664 46778 889999999999999999
Q ss_pred hhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHH
Q 012666 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (458)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (458)
.+++.+.... +|+..|.+...... ..+.... .+|++++++++ ++ +++ +..+
T Consensus 146 ~l~g~l~~~~---------------g~~~~f~~~~~~~~-~~~~~~~-~~~~~~~~~~~---~~---~~~------~~~~ 196 (382)
T TIGR00902 146 ALFGGLIGMF---------------DEQNILAILTAGLA-FMLIGFL-IKPTIPPKDAI---PE---DES------QGDS 196 (382)
T ss_pred HHHHHHHHHc---------------ChhHHHHHHHHHHH-HHHHHHH-cCCCCCCCccc---cc---ccc------ccch
Confidence 9888744332 89998887765432 2223323 33332111111 00 000 0112
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 012666 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (458)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 354 (458)
+..+.+|+ |+++.+.+..++.+.+...+..+.+.|+.+ .+.++.. .........+..++..++.++
T Consensus 197 ~~~~~l~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--~g~s~~~----------~g~l~~~~~~~~i~~~~~~~~ 262 (382)
T TIGR00902 197 AFIALLKN--PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA--AGISASA----------TGLLWGIGVLAEIIIFAFSNK 262 (382)
T ss_pred hHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHhH----------HHHHHHHHHHHHHHHHHHhHH
Confidence 34566677 888888888888888888888888888842 3332221 112233456777788899999
Q ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccc
Q 012666 355 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (458)
Q Consensus 355 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (458)
+.||+|+|+.+.++.+...+.+.++.+.+ +.+.++....+.|+.++...+....++++. |+
T Consensus 263 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~- 323 (382)
T TIGR00902 263 LFQNCSARDLLLISAIACVGRWAIIGAIE-----------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG- 323 (382)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHhHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH-
Confidence 99999999999999999999988887764 567788889999999999999888899987 77
Q ss_pred ccccchhhhHHHH-HHHhhhhh
Q 012666 435 GLGQGLSLGVLNL-AIVIPQVS 455 (458)
Q Consensus 435 ~~~~g~~~g~~~~-~~~~~~~i 455 (458)
+.+++..++++. ...+|..+
T Consensus 324 -~~~~~~q~~~~~~~~g~g~~~ 344 (382)
T TIGR00902 324 -SEIAKLQALYNALAMGGLIAI 344 (382)
T ss_pred -hhHHHHHHHHHHHHHHHHHHH
Confidence 677888888763 44444443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=204.50 Aligned_cols=334 Identities=11% Similarity=0.033 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHH
Q 012666 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (458)
..+..+............+|.+.+++|+|..+.+++.+...++..++.++.|+++| |+||||.++. +.+...++.
T Consensus 12 ~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~g~r~~~~~-~~~~~~i~~ 86 (394)
T PRK03699 12 SFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLME----IIPLKRQLIF-GFALMILAV 86 (394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHH-HHHHHHHHH
Confidence 33444444445566677889999999999999999999999999999999999999 9999998776 444555555
Q ss_pred HHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHh
Q 012666 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (458)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (458)
....+.++. +.+++.+.+.|++.+...+...+++.|.+|+++|+ ++.+..+....+|..+++.
T Consensus 87 ~l~~~~~~~---------------~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~ 149 (394)
T PRK03699 87 AGLMFSHSL---------------ALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRG--SRLLFTDSFFSMAGMIFPI 149 (394)
T ss_pred HHHHHcchH---------------HHHHHHHHHHHHhhHhhccchhHHhhhhcccchHH--HHHHHHHHHHHHHHHHHHH
Confidence 555565555 77788899999999988888899999999999999 8888888888888888887
Q ss_pred hhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHH
Q 012666 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (458)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (458)
+.+..... ..+||+.|.+.+++.++..++.++ ++.|+.+++++ + + +++ .
T Consensus 150 ~~~~l~~~--------------~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~---~--~-~~~---~------ 198 (394)
T PRK03699 150 IAAYLLAR--------------SIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHAP---K--A-DKP---V------ 198 (394)
T ss_pred HHHHHHhc--------------cccHHHHHHHHHHHHHHHHHHHHh--cCCccccccCc---c--c-cCc---c------
Confidence 76542110 028999999887766555444332 22221111110 0 0 000 0
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 012666 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (458)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 355 (458)
.+...+ +.++...+..++...+...+..|.+.|+.+ .++.++... ........++..++.++.+++
T Consensus 199 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~~~----------~~~~~~~~~~~~ig~~~~g~l 264 (394)
T PRK03699 199 -AKEKWG--IGVLFLAIAALLYILAQLTFISWVPEYAQK-KFGMSLEDA----------GNLVSNFWMAYMVGMWIFSFI 264 (394)
T ss_pred -ccccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChHHh----------hHHHHHHHHHHHHHHHHHHHH
Confidence 000112 455655555566556666777788888843 344333221 122333456678899999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccc
Q 012666 356 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (458)
Q Consensus 356 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
.||+++|+.+.....+..+...++... + +.+...+...+.|++.+..++...+...|..|.
T Consensus 265 ~dr~~~~~~l~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-- 325 (394)
T PRK03699 265 VRFFDLQRILTVLAGLALVLMYLFVNT--------------D---DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-- 325 (394)
T ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHc--------------C---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--
Confidence 999999998877666655554444332 1 233344456667777777777777777776664
Q ss_pred cccchhhhHHHHHHHhhhhhc
Q 012666 436 LGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~ 456 (458)
.++...|..+.+..+|+.++
T Consensus 326 -~~~~~~g~~~~~~~~g~~i~ 345 (394)
T PRK03699 326 -ASPKLVNFILTCGTIGTMLT 345 (394)
T ss_pred -CCHHHHHHHHHhhhHHHHHH
Confidence 34556677766666666554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=206.19 Aligned_cols=354 Identities=14% Similarity=0.105 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHh--CCCchhhHHHH-----hhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHH
Q 012666 41 GGIQFGWALQLSLLTPYV-QEL--GIPHAWASIIW-----LCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~-~~~--g~s~~~~~~~~-----~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (458)
+...+.........+.+. +++ +.++. .+++. ++..++..+++++.|+++| |+|||+.++. +.....
T Consensus 32 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~D----r~Grr~~l~~-~~~~~~ 105 (438)
T PRK09952 32 VVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGD----RLGRKRMLML-TVWMMG 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH----hhccHHHHHH-HHHHHH
Confidence 333344444444555544 444 66665 45443 2444556788888999999 9999998877 555666
Q ss_pred HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Q 012666 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (458)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (458)
++.++..+++++.. ......+.+++.|++.|++.+..++....++.|++|+++|+ +..+....+..+|..+
T Consensus 106 ~~~~~~~~~~~~~~-------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg--~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 106 IATALIGLLPSFST-------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKA--FYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHhcCCcHHH-------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCc--HHHHHHHHHHHHHHHH
Confidence 66666767777510 00111235778999999999999999999999999999999 8999999888999888
Q ss_pred HHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHH
Q 012666 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (458)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (458)
+..+...... ..... .....+||..|++.++..++. ++.....||+++..+++.+.+ ++++ +.+.
T Consensus 177 ~~~~~~~l~~-----~~~~~--~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~--~~~~-----~~~~ 241 (438)
T PRK09952 177 STGLVSLISM-----MTTDE--QFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQA--AAKK-----RIPV 241 (438)
T ss_pred HHHHHHHHHH-----hCCHH--HhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcc--cccc-----cCCH
Confidence 8766443110 00000 000138999999877654332 333344566553221110000 0000 0001
Q ss_pred HHHHHHHHhcchHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHH
Q 012666 273 LWELFGTFRYFSGTIWIIL-IVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 351 (458)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (458)
. ....++ ++.+... ...++.....+....+.+.|+.+. ++.+... .... ....++..+++.++
T Consensus 242 ~---~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~g~s~~~---------~~~~-~~~~g~~~~i~~~~ 305 (438)
T PRK09952 242 I---EALLRH--PGAFLKIIALRLCELLTMYIVTAFALNYSTQN-LGLPREL---------FLNI-GLLVGGLSCLTIPC 305 (438)
T ss_pred H---HHHHHc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHH---------HHHH-HHHHHHHHHHHHHH
Confidence 1 112233 3333333 334444445555566777776432 2222110 1111 22235566778889
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhh
Q 012666 352 MEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (458)
Q Consensus 352 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (458)
.|+++||+|||+.+..+.++..++.+.+.... ......+..+....+.+++.+...+..+++++|.+
T Consensus 306 ~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~ 372 (438)
T PRK09952 306 FAWLADRFGRRRVYITGALIGTLSAFPFFMAL-------------EAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMF 372 (438)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-------------HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999988877666555443332221 00002333344455557777777777889999999
Q ss_pred cccccccchhhhHH-HHHHHhhhhh
Q 012666 432 ESLGLGQGLSLGVL-NLAIVIPQVS 455 (458)
Q Consensus 432 ~~~~~~~g~~~g~~-~~~~~~~~~i 455 (458)
|. +.|++..|+. ++...++..+
T Consensus 373 p~--~~r~tg~g~~~~~~~~lgg~~ 395 (438)
T PRK09952 373 GA--SYRYSGAGVGYQVASVVGGGF 395 (438)
T ss_pred Cc--chhHHHHhHHHHHHHHHHHHH
Confidence 99 6676666663 3434455433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-24 Score=202.60 Aligned_cols=340 Identities=14% Similarity=0.122 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (458)
.+....+...++.......++.+.++++.++.+.+++.+.+.+...+..|+.|+++| |+||||+++....+..+ +
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laD----r~grr~vl~~~~~~~~~-~ 81 (393)
T PRK11195 7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFAD----SFPKGRVMFIANGIKLL-G 81 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhh----ccCCchhhHHHHHHHHH-H
Confidence 344444555555555556666778999999999999999999999999999999999 99999998885544433 3
Q ss_pred HHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHH
Q 012666 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (458)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (458)
.+...+..+ .++.+.++|++.+...+...+++.|++|+++|+ +++++.+....+|..+||
T Consensus 82 ~~~~~~~~~------------------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~--~a~~~~~~~~~~~~~~Gp 141 (393)
T PRK11195 82 CLLMLFGIH------------------PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLV--KANGWMEGSTIAAILLGT 141 (393)
T ss_pred HHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 333322211 146778899999999999999999999999999 999999999999999999
Q ss_pred hhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHH
Q 012666 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (458)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (458)
.+++++... .|+..+.+.+.+.++. ++..+.+||++.++++++ .+. ....++..+
T Consensus 142 ~lgG~l~~~----------------~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~------~~~--~~~~~~~~~ 196 (393)
T PRK11195 142 VLGGALADP----------------HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQS------WNP--IALLRDFFH 196 (393)
T ss_pred HHHHHHHHH----------------HHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccC------CCH--HHHHHHHHH
Confidence 999874221 3444555544433333 334456777543221110 000 000111122
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 012666 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (458)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 354 (458)
+.+..+++ |.++.......+.+..........+.|+ ++.++.++.. ........+++.++++++.++
T Consensus 197 ~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lg~s~~~----------~G~~~~~~~~g~i~g~~~~~~ 263 (393)
T PRK11195 197 ACRVLWRD--KLGRFSLAGTTLFWGAGATLRFLVLAWA-PVALGITLNQ----------PAYLQAVVAIGIAVGAGAAAR 263 (393)
T ss_pred HHHHHHhC--chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCChhH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 23344555 4554444333333443334433444455 2333333222 122334456778888999999
Q ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccc
Q 012666 355 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (458)
Q Consensus 355 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (458)
+.||.++++.+..+.. .++...++...+ +.+...+...+.|++.+...+...+.+.+..|+
T Consensus 264 l~~~~~~~~~~~~g~~-~~~~~~~~~~~~-----------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~- 324 (393)
T PRK11195 264 LVTLETVLRVLPAGIL-MGLVVLLMALQH-----------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV- 324 (393)
T ss_pred HhcCCcccchHHHHHH-HHHHHHHHHHHh-----------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-
Confidence 9999998887776643 333333333322 344455666678888887776677777776444
Q ss_pred ccccchhhhHHHHHHHhhhhhc
Q 012666 435 GLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 435 ~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+..+|...++.|+..++++.++
T Consensus 325 ~~~~g~~~a~~~~~~~~~~~~~ 346 (393)
T PRK11195 325 LVGAGHSIAVQNFNENLAMLLM 346 (393)
T ss_pred cccchhHHHHHhHHHHHHHHHH
Confidence 2237999999999999887765
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=207.23 Aligned_cols=321 Identities=12% Similarity=0.036 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 47 ~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
.....+.+|.+.+++|.|..+.+++.+.+.++..+++++.|+++| |+|||++++. +.....++.+...+++++
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~d----r~G~r~~l~~-~~~l~~~~~~~~~~a~~~-- 97 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQ----HVSERRSVAI-SLLLIAVGALMRELYPQS-- 97 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH----HhCchHHHHH-HHHHHHHHHHHHHHCcch--
Confidence 355667889999999999999999999999999999999999999 9999999888 656677777777788777
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccc
Q 012666 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (458)
+.+++.|.+.|++.+...+...+++.|++| ++|+ ++++.......+|..+++.+++.+....
T Consensus 98 -------------~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~--~~~g~~~~~~~~g~~~g~~~~~~l~~~~-- 159 (393)
T PRK09705 98 -------------ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTP--LVMGLWSAALMGGGGLGAAITPWLVQHS-- 159 (393)
T ss_pred -------------HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 778899999999999988888999999987 7788 9999999988889988888866532110
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHH
Q 012666 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGT 286 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (458)
.+||+.+.+.++..++..+..+...++.++++ ++ ++. +..+.+++ ++
T Consensus 160 ------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~-----------~~~~~l~~--~~ 206 (393)
T PRK09705 160 ------------ETWYQTLAWWALPAVVALFAWWWQSAREVASS-HK-------TTT-----------TPVRVVFT--PR 206 (393)
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-cC-------CCc-----------CCcccccC--Hh
Confidence 27888877665544333322222222221111 00 000 00122334 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHH
Q 012666 287 IWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG 366 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 366 (458)
.|.+....++...++.....+.+.|+.+ ++.+... .........++.++++++.+++.||+++|+.+.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s~~~----------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~ 274 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE--IGASAQY----------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLM 274 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCChhh----------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 6666665666666677777788888743 3433322 122334467788899999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHH
Q 012666 367 ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLN 446 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 446 (458)
.+..+..++..++...+ . +.... ...+.|++.+...+.......+..+++ +.+|+..|+.+
T Consensus 275 ~~~~l~~~~~~~~~~~~--------------~--~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~-~~~g~~~g~~~ 335 (393)
T PRK09705 275 LALVLQLVGFCGFIWLP--------------L--QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP-AIAGKLVAFMQ 335 (393)
T ss_pred HHHHHHHHHHHHHHHcc--------------c--hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH-HHHHHHHHHHH
Confidence 88777777666554332 1 11112 233456666666666666666766531 56789999888
Q ss_pred HHHHhhhhhc
Q 012666 447 LAIVIPQVSS 456 (458)
Q Consensus 447 ~~~~~~~~i~ 456 (458)
....+++.++
T Consensus 336 ~~~~~~~~~g 345 (393)
T PRK09705 336 GIGFIIAGLA 345 (393)
T ss_pred HHHHHHHHHH
Confidence 8887776554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=205.55 Aligned_cols=356 Identities=13% Similarity=0.061 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccc-cCCcCCCcchhHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR-CTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~-~~~r~Grr~~~~~~~~~ 109 (458)
++...+....+............+|.++++.|.+..+++.+..+... .+..+++|+++|| +.+|+||||.++..+.+
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 34555555566666777788889999999999999999987433332 2688999999995 34445999988876777
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
..+++...+.+.+.. ..++.+.+.+.+.+++.+...++..++..|++|+++|+ ++.++...+..+|
T Consensus 90 ~~~~~~~~~a~~~~~------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg--~~~~i~~~g~~lG 155 (491)
T PRK11010 90 LLLVAIAAMGFLEPG------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERG--AGAAISVLGYRLA 155 (491)
T ss_pred HHHHHHHHHHHcCCc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH--HHHHHHHHHHHHH
Confidence 776666655443221 12366777788888888888999999999999999999 9999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchH
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (458)
.++++.++..+... ..+||..|++.++..++..+..+ +.||+++.++++ ++. +
T Consensus 156 ~llg~~l~~~l~~~--------------~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~-------~~~-----~ 208 (491)
T PRK11010 156 MLVSGGLALWLADR--------------YLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVP-------KTL-----E 208 (491)
T ss_pred HHHHHHHHHHHHhc--------------ccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccc-------cch-----h
Confidence 99998876653221 02899999998877666644443 467754321100 000 1
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHH
Q 012666 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (458)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (458)
++..+++.+.+++ +..+......++...+......+.++|+.++ ++.++.+ .+........++.+++.
T Consensus 209 ~~~~~~l~~~~~~--~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-~G~s~~~---------~g~~~~~~g~i~~iiG~ 276 (491)
T PRK11010 209 QAVVAPLRDFFGR--NNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-VGFDAGE---------VGLVNKTLGLLATIVGA 276 (491)
T ss_pred hhHHHHHHHHHcC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHH---------HHHHHHHHHHHHHHHHH
Confidence 1112234444554 4455444444444444444445566665322 2322211 11111122345678889
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHh
Q 012666 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (458)
Q Consensus 350 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (458)
++.|++.||+|+|+.+..+.++.++..+.+..... . +. +.+.+.....+..+..+...+..+++..+
T Consensus 277 ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~---~--------~~--~~~~l~~~~~l~~~~~g~~~~~~~a~~~~ 343 (491)
T PRK11010 277 LYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI---T--------DK--NLYSMGAAVFFENLCGGMGTAAFVALLMT 343 (491)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---c--------cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877666555554433332210 0 10 23333334444444445455556788889
Q ss_pred hhcccccccchhhhHHHHHHHhhhhhc
Q 012666 430 RTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 430 ~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
..++ +..|+..|+.|....++..++
T Consensus 344 l~~~--~~~~t~~gl~~s~~~lg~~~~ 368 (491)
T PRK11010 344 LCNK--SFSATQFALLSALSAVGRVYV 368 (491)
T ss_pred HcCC--CCcHHHHHHHHHHHHHHHHHH
Confidence 9988 778899999998888877654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=202.51 Aligned_cols=333 Identities=12% Similarity=0.062 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
+.++.+....+...+......+++|.+.+++|.|..+.|++.+.+.++..+++++.|+++| |+||||.+.. +.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~d----r~g~k~~~~~-~~~~ 80 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIK----RIGFNRSYYL-ASLI 80 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHH-HHHH
Confidence 3355555556666677888889999999999999999999999999999999999999999 9999998877 4455
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
..++.....+++++ +.+++.+++.|++.+...+...+.+.|..++++|+ ++++......++|.
T Consensus 81 ~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 143 (381)
T PRK03633 81 FAAGCAGLGLMVGF---------------WSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRG--RLLAAYMMVYYLGT 143 (381)
T ss_pred HHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHH
Confidence 55555656666665 77888999999999888888888888889999999 99999999999999
Q ss_pred HHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHH
Q 012666 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 270 (458)
Q Consensus 191 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
.+|+.+++...... ++..++..+.+......+. +.+.+++++ ++ ++.
T Consensus 144 ~~g~~~~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~-------~~~------- 190 (381)
T PRK03633 144 VLGQLLVSKVSTEL----------------MSVLPWVTGLVLAAILPLL--FTRILNQQA-EN-------HDS------- 190 (381)
T ss_pred HHHHHHHhcccccc----------------cchHHHHHHHHHHHHHHHH--HhcccCCCC-CC-------CCC-------
Confidence 99999987642211 1111222222211111111 112111110 00 000
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHH
Q 012666 271 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (458)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (458)
++..+.+++ +.++......+...........+.+.|+.+ .+.++. ..........+..+++++
T Consensus 191 ---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~g~s~~----------~~g~~~~~~~~~~~~~~~ 253 (381)
T PRK03633 191 ---TSIWPMLKL--RQARLGVNGCIISGIVLGSLYGLMPLYLNH--QGMSDA----------SIGFWMALLVSAGILGQW 253 (381)
T ss_pred ---CCHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHH----------HHHHHHHHHHHHHHHHHh
Confidence 011233455 455544333333333444455566776642 121111 111223345667788899
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhh
Q 012666 351 LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (458)
Q Consensus 351 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (458)
..+++.||+|+|+.+..+..+..++.+... .. . .......+.|++.....+...+.+.|.
T Consensus 254 ~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~------------------~-~~~~~~~l~g~~~~~~~p~~~~~~~~~ 313 (381)
T PRK03633 254 PIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ------------------A-AMAPALFILGAAGFTLYPVAMAWACEK 313 (381)
T ss_pred hhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh------------------H-HHHHHHHHHHHHHHhHHHHHHHHHHcc
Confidence 999999999999998887777776655432 11 1 122334455666566677778888888
Q ss_pred hcccccccchhhhHHHHHHHhhhhhcC
Q 012666 431 TESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 431 ~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.|+ ++++...+.+++...+|+.+++
T Consensus 314 ~~~--~~~~~~~~~~~~~~~lG~~igp 338 (381)
T PRK03633 314 VEH--HELVAMNQALLLSYTVGSLLGP 338 (381)
T ss_pred CCH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 887 6667777777777777776653
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=199.72 Aligned_cols=338 Identities=12% Similarity=0.079 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (458)
......+...++.....+.+|.++ +++|.|+++.|++.+...+...+.+++.|.++| |+||||.++..+.+...+
T Consensus 19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~d----r~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSD----KRGDRKSLIVFCCLLGVL 94 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccchhHHHHHHHHHHHH
Confidence 333445566677777788888876 789999999999987776655555555555599 999999876655555445
Q ss_pred HHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHH
Q 012666 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG 193 (458)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig 193 (458)
......+++++ +.+++.+.+.+...+...+...++..|..+++.|..+...++.+...++|..++
T Consensus 95 ~~~~~~~~~~~---------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g 159 (393)
T PRK15011 95 ACTLFAWNRNY---------------FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIG 159 (393)
T ss_pred HHHHHHHhhHH---------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 45545555554 444444444444445566677788888776665531145578888899999999
Q ss_pred HhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHH
Q 012666 194 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 273 (458)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (458)
+.+++.+.... +||..|+..++..++..++.++..||.+++++++. ++.+
T Consensus 160 ~~i~~~l~~~~---------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--------- 209 (393)
T PRK15011 160 PPLAYALAMGF---------------SFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT------GTLE--------- 209 (393)
T ss_pred hHHHHHHHHhc---------------ChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc------cccc---------
Confidence 99988743322 89999999888777777777777787643322110 0000
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012666 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (458)
+.+ ++ ++..+.........+.....+..+.+.|+.++ ++.++.. .........++.+++.++.|
T Consensus 210 -~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~~~~~~~----------~g~~~~~~~~~~i~~~~~~G 273 (393)
T PRK15011 210 -APR---RN-RRDTLLLFVICTLMWGTNSLYIINMPLFIINE-LHLPEKL----------AGVMMGTAAGLEIPTMLIAG 273 (393)
T ss_pred -ccc---cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 000 11 12223333333333334444445566666432 2322211 11222233455677889999
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcc
Q 012666 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (458)
Q Consensus 354 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (458)
++.||+|+|+.+..+.....+.+......+ +.+...+...+.++..+...+....+..|..|+
T Consensus 274 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~ 336 (393)
T PRK15011 274 YFAKRLGKRFLMRVAAVAGVCFYAGMLMAH-----------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG 336 (393)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999987766655554443333221 233344445555555555555556777888875
Q ss_pred cccccchhhhHHHHHHHhhhhhcC
Q 012666 434 LGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 434 ~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
++|++.++++....+|+.+++
T Consensus 337 ---~~g~~~~~~~~~~~lg~~~g~ 357 (393)
T PRK15011 337 ---QAGSATTLYTNTSRVGWIIAG 357 (393)
T ss_pred ---CcchHHHHHHHHHHHHHHHHH
Confidence 488899988887777776653
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-23 Score=199.74 Aligned_cols=338 Identities=13% Similarity=0.074 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHH
Q 012666 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (458)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (458)
....+......+......+.+|.+.+++|.++.+.+++.+++.++..++.++.|+++| |+|||+.++. +.....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~ 83 (401)
T PRK11043 9 VYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSD----RYGRKPVLLA-GLSLFAL 83 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHh----hcCCcHHHHH-HHHHHHH
Confidence 3334344444456667777778888999999999999999999999999999999999 9999998876 4444555
Q ss_pred HHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHH
Q 012666 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG 193 (458)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig 193 (458)
+.....+.+++ +.+++.+.+.|++.+...+...+++.|.+|+++++ +..+.......+|..++
T Consensus 84 ~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g 146 (401)
T PRK11043 84 GSLGMLWVESA---------------AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKAN--RVFATIMPLVALSPALA 146 (401)
T ss_pred HHHHHHHhcCH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHHHH
Confidence 55555565555 77778888988888777777788999999998888 88888888888899999
Q ss_pred HhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHH
Q 012666 194 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 273 (458)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (458)
+.+++...... +|++.|++.+++.++..++..+ .+|++++++++ ++ .
T Consensus 147 ~~i~~~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~---~ 193 (401)
T PRK11043 147 PLLGAWLLNHF---------------GWQAIFATLFAITLLLILPTLR-LKPSKKARKQS--------------QD---A 193 (401)
T ss_pred HHHHHHHHhcC---------------ChHHHHHHHHHHHHHHHHHHHH-cCCCCCccccc--------------hH---H
Confidence 98877643222 8999998888777666555444 34332211000 01 1
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012666 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (458)
.+.++.+++ ++++...+...+.......+..+.+.++. + ++.++.. ..+......++..+++++.+
T Consensus 194 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-~g~s~~~----------~g~~~~~~~~~~~~g~~~~~ 259 (401)
T PRK11043 194 LTFKQLLKS--KTYLGNVLIFAACSAAFFAWLTGSPFILE-Q-MGYSPAD----------IGLSYVPQTIAFLVGGYGCR 259 (401)
T ss_pred HHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHHhHHHHH-H-cCCCHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 234455566 56655444444444444445555666553 2 2322211 11223334566677888899
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcc
Q 012666 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (458)
Q Consensus 354 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (458)
++.||+++|+.........+++.+.+...... +.. ..+...+...+.+++.+..++...+...|..|
T Consensus 260 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 326 (401)
T PRK11043 260 AALQKWGGEQLLPWLLVLFAVSVIAIWLASLL-----------SHP-SLVPLLIPFCVMAAANGAIYPIVVAQALRPFP- 326 (401)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-
Confidence 99999999887766555555554433332110 110 23444555667788888878777777666655
Q ss_pred cccccchhhhHHHHHHHhhhhh
Q 012666 434 LGLGQGLSLGVLNLAIVIPQVS 455 (458)
Q Consensus 434 ~~~~~g~~~g~~~~~~~~~~~i 455 (458)
+.+|++.|+++.....+..+
T Consensus 327 --~~~g~~~g~~~~~~~~~~~~ 346 (401)
T PRK11043 327 --QATGKAAALQNTLQLGLCFL 346 (401)
T ss_pred --ccChHHHHHHHHHHHHHHHH
Confidence 46899999999876655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-24 Score=205.44 Aligned_cols=348 Identities=12% Similarity=0.064 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHH-hhh-----hhhhhhhccccceeccccCCcCCCcchhHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIW-LCG-----PVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC 106 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~-~~~-----~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~ 106 (458)
.....+..+...+.........|.+.++++.++.+.+.+. +.. .+...+++++.|+++| |+||||.++..
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~D----r~Grr~~l~~~ 92 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYID----RVGRRKGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhh----hhchHHHHHHH
Confidence 3344455555666777778888888899998887765432 222 2223467888999999 99999988884
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHH
Q 012666 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (458)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (458)
. ....++..+..+++++..+ .......+++.|++.|++.+...+....++.|++|+++|+ +++++.....
T Consensus 93 ~-~~~~~~~~l~~~~~~~~~~-------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg--~~~~~~~~~~ 162 (434)
T PRK15075 93 L-SIMASGTLLIAFVPGYATI-------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKG--FYTSWQSASQ 162 (434)
T ss_pred H-HHHHHHHHHHHhCCcHHHH-------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccch--HHHHHHHHHH
Confidence 4 4455556666666664100 0001124678899999999998888899999999999999 9999999888
Q ss_pred HHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccccc
Q 012666 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (458)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (458)
++|..+++.+++...... .+..... .+||+.|++..... ...++.....||+++...++ ++.
T Consensus 163 ~~g~~~g~~~g~~l~~~~-~~~~~~~------~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~-------~~~--- 224 (434)
T PRK15075 163 QVAVVFAALLGYLLNQWL-SPAQMAE------WGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARK-------HRP--- 224 (434)
T ss_pred HHHHHHHHHHHHHHHHhC-CHHHHhc------cchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhh-------hcc---
Confidence 888888887766532110 1111111 38999998754332 11111112222321100000 000
Q ss_pred chHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHH
Q 012666 267 DVHEAFLWELFGTFRYFSGTIWII-LIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 345 (458)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (458)
+.++..+ +..++ ++.+.. +...++....+.....|.+.|+.+ .++.+.. ...+......++.
T Consensus 225 -~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~~~~----------~~~~~~~~~~~~~ 287 (434)
T PRK15075 225 -SMREIFR---SLAAN--WRIVLAGMLMVAMTTVSFYLITVYTPTFGKT-VLHLSAA----------DSLLVTLCVGVSN 287 (434)
T ss_pred -ccccHHH---HHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHH----------HHHHHHHHHHHHH
Confidence 0011111 11222 233322 233333444555666778887743 2332221 1122333456777
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHH-HHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchh
Q 012666 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFL-AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424 (458)
Q Consensus 346 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (458)
+++.++.|+++||+|||+.+..+.++..+... ...... +.. ..........+.+++.+...+..+
T Consensus 288 ~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 353 (434)
T PRK15075 288 FIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV-------------AAP-SFARMLAVELWLSFLYGSYNGAMV 353 (434)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-------------cCC-chHHHHHHHHHHHHHHHHHHhhHH
Confidence 88899999999999999988766544433221 111111 100 122233334445566666666667
Q ss_pred HhHHhhhcccccccchhhhHH
Q 012666 425 ALVSIRTESLGLGQGLSLGVL 445 (458)
Q Consensus 425 ~~~~~~~~~~~~~~g~~~g~~ 445 (458)
.+..|.+|+ +.+|+..|+.
T Consensus 354 ~~~~e~~p~--~~rg~~~g~~ 372 (434)
T PRK15075 354 VALTEVMPA--EVRTAGFSLA 372 (434)
T ss_pred HHHHHHCCC--CccchheeHH
Confidence 889999999 7778877774
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=206.75 Aligned_cols=339 Identities=13% Similarity=0.035 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhh
Q 012666 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (458)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~ 120 (458)
+...++.......+|.+.++++.++.+.|++.+...++..+++++.|+++| |+||||.++... ....++......
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~d----r~g~~~~l~~~~-~~~~~~~~~~~~ 101 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLAD----RYDRKKLILLAR-GTCGLGFIGLAL 101 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhh----hcCCceEEEehH-HHHHHHHHHHHH
Confidence 344556667777888888899999999999999999999999999999999 999999887633 333333332211
Q ss_pred ccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
..- . .....+.+.+.+.+.|++.+...++..+++.|+.|+++|+ ++.++.....++|..+|+.+++.+
T Consensus 102 ~~~---------~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~g~l 169 (417)
T PRK10489 102 NAF---------L-PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLM--QAGAITMLTVRLGSVISPALGGLL 169 (417)
T ss_pred HHH---------c-CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHH--HHHHHHHHHHhHHHHhHHHHHHHH
Confidence 000 0 0012266677888888888888888889999999999999 999999999999999999998764
Q ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHH
Q 012666 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTF 280 (458)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (458)
.... +|++.|++.++..++..++ .+.+||.+++++++ ++ ..++..+..+..+
T Consensus 170 ~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~---------~~---~~~~~~~~~~~~~ 221 (417)
T PRK10489 170 IAAG---------------GVAWNYGLAAAGTFITLLP-LLRLPALPPPPQPR---------EH---PLRSLLAGFRFLL 221 (417)
T ss_pred HHHH---------------hhHHHHHHHHHHHHHHHHH-HHhCCCCCCCCccc---------cc---chHHHHHHHHHHH
Confidence 3221 7888888777665554443 44556543221110 00 0111122333344
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012666 281 RYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360 (458)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 360 (458)
++ +.++...+..++... ......+.+.|.. +.++.++.. ..+......++.+++.++.+++.||.+
T Consensus 222 ~~--~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-~~~g~~~~~----------~g~~~~~~~~g~~ig~~~~~~l~~~~~ 287 (417)
T PRK10489 222 AS--PVVGGIALLGGLLTM-ASAVRVLYPALAD-EVWQMGAAQ----------IGLLYAAVPLGAALGALTSGWLAHSAR 287 (417)
T ss_pred cC--hHHHHHHHHHHHHHH-HHhHHHhhHHHHH-hccCCChhH----------hHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 44 555544443333222 2344556666664 323322211 122233456777888899999999987
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccch
Q 012666 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGL 440 (458)
Q Consensus 361 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 440 (458)
+++.+..+..+.+++++++...+ +.+...+...+.|++.+...+...+++.|..|+ +.+|+
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~ 348 (417)
T PRK10489 288 PGLLMLLSTLGSFLAVGLFGLMP-----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD--EMLGR 348 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHccc-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH--HHHHH
Confidence 77777777777777666554432 345556677777887777777778899999998 88999
Q ss_pred hhhHHHHHHHhhhhhcC
Q 012666 441 SLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 441 ~~g~~~~~~~~~~~i~~ 457 (458)
..|+++....+++.+++
T Consensus 349 ~~g~~~~~~~~g~~~g~ 365 (417)
T PRK10489 349 INGLWTAQNVTGDAIGA 365 (417)
T ss_pred HHHHHHHHHhhhHhHHH
Confidence 99999988888877653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=206.89 Aligned_cols=337 Identities=12% Similarity=0.053 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccC
Q 012666 50 QLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (458)
Q Consensus 50 ~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (458)
...+++.+.+++|.+..+.+++.+.+.+...++.|+.|+++| |+|||+.++. +.+...++.+...++++.
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~~~~~----- 107 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVN----RFGCRPVVIA-GGLLASLGMILASFSSNV----- 107 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHH----HcCchHHHHh-hHHHHHHHHHHHHHhhhH-----
Confidence 455778888999999999999999999999999999999999 9999998776 444455555555565554
Q ss_pred CCCCCCchhHHHHHH-HHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccc
Q 012666 130 DRGDFRPRAIAVFVF-GFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 208 (458)
Q Consensus 130 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~ 208 (458)
+.+++ .+.+.|++.+...++..+++.|+++ ++|+ ++.++.+....+|..+++.+++.+....
T Consensus 108 ----------~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~--~a~g~~~~~~~~g~~~~~~l~~~l~~~~---- 170 (455)
T TIGR00892 108 ----------IELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRP--LANGLAMAGSPVFLSTLAPLNQYLFESF---- 170 (455)
T ss_pred ----------HHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHH--HHHHHHHhcccHHHHHHHHHHHHHHHHh----
Confidence 44443 4567788888766777788889986 7889 9999999999999999988876633222
Q ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCC-CCC-ccc-cccc-c-chHHHHHHHH--HHHHh
Q 012666 209 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSA-PFS-EEG-HEQS-S-DVHEAFLWEL--FGTFR 281 (458)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~-~~~-~~~~-~-~~~~~~~~~~--~~~~~ 281 (458)
+||+.|++.+++.+++.+..++..++.+.+...+.+ ++. +++ ..++ + ....+..++. .+.++
T Consensus 171 -----------gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (455)
T TIGR00892 171 -----------GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFT 239 (455)
T ss_pred -----------ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhc
Confidence 899999999887766655544444432211100000 000 000 0000 0 0000111111 24556
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 012666 282 YFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-- 359 (458)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-- 359 (458)
+ +.++..+...++...+......+.+.|..+ ++.+.. .........+++.++++++.+++.||.
T Consensus 240 ~--~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~g~s~~----------~~g~~~~~~~~~~~~~~~~~g~l~d~~~~ 305 (455)
T TIGR00892 240 H--RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD--KGVDEY----------EAAFLLSIIGFVDIFARPSCGLIAGLKWI 305 (455)
T ss_pred C--chHHHHHHHHHHHHHHccchHHHHHHHHHH--cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6 778877776666666666666677777642 222221 122333345677778888999999973
Q ss_pred cChhhHHH--HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccc
Q 012666 360 GAGFIWGI--SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (458)
Q Consensus 360 g~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
++|+.... +.+..+++.++....+ +.+.+++..++.|++.+...+..++++.|.+|+ +.
T Consensus 306 ~~~~~~~~~~~~~~~~l~~ll~~~~~-----------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~--~~ 366 (455)
T TIGR00892 306 RPHVQYLFSFALLFNGLTHLLCALAG-----------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA--QR 366 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc-----------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH--HH
Confidence 33433333 2333333333333221 345566778888998888888889999999998 88
Q ss_pred cchhhhHHHHHHHhhhhhcC
Q 012666 438 QGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 438 ~g~~~g~~~~~~~~~~~i~~ 457 (458)
+|+.+|+++....++++++.
T Consensus 367 ~g~~~g~~~~~~~lg~~igp 386 (455)
T TIGR00892 367 FSSAVGLVTIVECCAVLIGP 386 (455)
T ss_pred HhhHHhHHHHHHHHHHHccc
Confidence 99999999999999988765
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-24 Score=205.80 Aligned_cols=339 Identities=14% Similarity=0.137 Sum_probs=207.9
Q ss_pred HHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCC
Q 012666 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (458)
Q Consensus 52 ~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (458)
...| +.++.|+++.+.+++.+++.++..++.++.|+++| |+|||+.++. +.+...++.+.....++.
T Consensus 48 ~~~p-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~------- 114 (438)
T TIGR00712 48 LAMP-YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILSAAVMLLMGFVPWA------- 114 (438)
T ss_pred hhhH-HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhh----ccCCceehHH-HHHHHHHHHHHHhccccc-------
Confidence 3444 44457999999999999999999999999999999 9999998776 444444444444333221
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc-ccccccccccc
Q 012666 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF-SGWFKILPFTL 210 (458)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~-~~~~~~~~~~~ 210 (458)
....+.+.+.+.+.|++.+...++....+.|++|+++|+ +++++.+....+|..+++.+.+. ....
T Consensus 115 ----~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~l~~~~~~~~------- 181 (438)
T TIGR00712 115 ----TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERG--TIVSIWNCAHNIGGGIPPLLVLLGMAWF------- 181 (438)
T ss_pred ----cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccch--hHHHHHHHHHHhHhHHHHHHHHHHHHHh-------
Confidence 112355667788889988888888889999999999999 99999999999999888876543 2111
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCC---CCccccccccchHHHHHHHH--HHHHhcchH
Q 012666 211 TSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP---FSEEGHEQSSDVHEAFLWEL--FGTFRYFSG 285 (458)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 285 (458)
.+||..|++.+++.++..++.++++||+++....++.+ ++.+++..++.+++...++. ...+++ +
T Consensus 182 --------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 251 (438)
T TIGR00712 182 --------NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPN--K 251 (438)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccC--c
Confidence 28999999988888777777777778765432111100 00000000000000001111 124455 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhH
Q 012666 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (458)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 365 (458)
.+|...+..++..........|.|.|+.+ .++.++.. ..+......+.++++.++.+++.||+++++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~~----------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~ 320 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKE-VKHFALDK----------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG 320 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHH-ccCCChhh----------HHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 78877776666666666777788888853 23333222 12233345677888999999999999654322
Q ss_pred HHHHHHHHHHHH--HHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhh
Q 012666 366 GISNILMALCFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 443 (458)
Q Consensus 366 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 443 (458)
..+.....+..+ +..... +.. +.+.......+.|.+.............|.+|+ +.+|++.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g 384 (438)
T TIGR00712 321 ATGVFFMTLVTIAVIVYWMN-------------PAG-NPLVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAG 384 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhc-------------CCC-chHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh--hheeeehh
Confidence 223222221111 111111 110 122222333333433211111223456788898 88999999
Q ss_pred HHHHHHHhhh
Q 012666 444 VLNLAIVIPQ 453 (458)
Q Consensus 444 ~~~~~~~~~~ 453 (458)
+.+....++.
T Consensus 385 ~~~~~~~~gg 394 (438)
T TIGR00712 385 FTGLFGYLGG 394 (438)
T ss_pred hhchHHHhhh
Confidence 9988776653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=214.68 Aligned_cols=355 Identities=14% Similarity=0.148 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHHHhCCC--------chhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHH
Q 012666 46 GWALQLSLLTPYVQELGIP--------HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (458)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s--------~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~ 117 (458)
........++....+++.+ ..+.+++.+++.++..+++++.|+++| |+|||+.+++...+ ..++..+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~~~~~~~~~-~~~~~~~ 117 (481)
T TIGR00879 43 DTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSD----RFGRKKSLLIIALL-FVIGAIL 117 (481)
T ss_pred ccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhh----hhhhHHHHHHHHHH-HHHHHHH
Confidence 3444555666666666666 789999999999999999999999999 99999988775544 4444444
Q ss_pred HhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 012666 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (458)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (458)
.....+. ...+.+++.+.+.|++.+...+...+++.|++|+++|+ ++.++.+....+|..+++.++
T Consensus 118 ~~~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 118 MGLAAFA------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRG--ALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHhccc------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhh--hhhhHHHHHHHHHHHHHHHHH
Confidence 4332221 12257888999999999999999999999999999999 999999999999999999987
Q ss_pred ---ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc--------ccccccc
Q 012666 198 ---SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE--------EGHEQSS 266 (458)
Q Consensus 198 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--------~~~~~~~ 266 (458)
...... .+||+.|++.++..++ .++..+++||+++....+++.++. +.++++.
T Consensus 184 ~~~~~~~~~---------------~~w~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (481)
T TIGR00879 184 SGKVSLNNT---------------LGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDK 247 (481)
T ss_pred HHhhcCCCC---------------ccHHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcH
Confidence 332111 2899999996554443 444556678765421111000000 0000000
Q ss_pred chHH-----------------HHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCccccccc
Q 012666 267 DVHE-----------------AFLWELFGTFRY-FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYA 328 (458)
Q Consensus 267 ~~~~-----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (458)
...+ ...++.++..++ .++.++..++..+...........+.+.+..+ ++.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~------- 318 (481)
T TIGR00879 248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN--AGVST------- 318 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH--cCCCc-------
Confidence 0000 000111111110 01122222222222222222333344444421 22222
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC-chHHHHHHH
Q 012666 329 TGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPP-NGIVIAALI 407 (458)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 407 (458)
...........++.+++.++.+++.||+|||+.+..+..+.+++++++........+ +. ....+....
T Consensus 319 ---~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 387 (481)
T TIGR00879 319 ---DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT--------GSSKSSGNVAIV 387 (481)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC--------CcccchhHHHHH
Confidence 112233334566778889999999999999999988888877777766533210000 00 000122222
Q ss_pred HHHHHhhHHHHH-hhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 408 IFTILGGPLAIT-YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 408 ~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
...+++.+++.. .+....+..|.+|+ +.+|++.|+.+....+++++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~lg~~i~~ 436 (481)
T TIGR00879 388 FILLFIAFFAMGWGPVPWVIVSEIFPL--SLRPKGISIAVAANWLANFIVG 436 (481)
T ss_pred HHHHHHHHHHccccCeehhhhhccCCh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 35667788999998 8899999999999999887653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=210.73 Aligned_cols=383 Identities=12% Similarity=0.006 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 36 VASVAGGIQFGWALQLSLLTPYVQE-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
.++..+...+.........|.+..+ .+.++.+.+++.+...++..++.++.|+++| |+|||+.+++...+
T Consensus 21 ~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d----~~Grr~~~~~~~~~- 95 (502)
T TIGR00887 21 AGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLAD----KLGRKRVYGMELII- 95 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHH-
Confidence 3334444444445555555655443 2345567789999999999999999999999 99999988774444
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
..++.++..++++. ........+++.|++.|++.+...+....++.|++|+++|+ ++.++......+|.
T Consensus 96 ~~v~~~~~~~~~~~---------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg--~~~~~~~~~~~~g~ 164 (502)
T TIGR00887 96 MIIATVASGLSPGS---------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG--AMMAAVFAMQGFGI 164 (502)
T ss_pred HHHHHHHHHHccCc---------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH--HHHHHHHHHHHHHH
Confidence 44444444444331 11122467889999999999999999999999999999999 99999999999999
Q ss_pred HHHHhhhccccccccccccccccc---------cccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC----
Q 012666 191 ILGYATGSFSGWFKILPFTLTSAC---------NVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF---- 257 (458)
Q Consensus 191 ~ig~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---- 257 (458)
.+++.++....... ......... .....+||+.+.+.++..++ .++..+++||+|+...++++++
T Consensus 165 ~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i-~~~~~~~lpESpr~l~~~~~~~~~a~ 242 (502)
T TIGR00887 165 LAGAIVALIVLAGF-KHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL-ALYFRLTIPETPRYTADVAKDVEQAA 242 (502)
T ss_pred HHHHHHHHHHHHHh-ccccccccccccccccccchhcccHHHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHhCcchHHHH
Confidence 99988865421100 000000000 00112799999776655543 4445577899987421111100
Q ss_pred -----------Cccccc--c---ccchHHHHHHHHHHHHhcchHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhceec
Q 012666 258 -----------SEEGHE--Q---SSDVHEAFLWELFGTFRYFSGTIWIILI----VTALTWLGWFPFLLFDTDWMGREIY 317 (458)
Q Consensus 258 -----------~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (458)
+++.++ + +++..+..++++++.... ++.+...+ ..+...+.++....+.+.++.+ .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~--~ 318 (502)
T TIGR00887 243 SDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFK--WRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA--I 318 (502)
T ss_pred HHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH--H
Confidence 000000 0 000011123333321111 22211111 1222222233333445555532 2
Q ss_pred cCCCccccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 012666 318 GGEPNEGQN--YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHD 395 (458)
Q Consensus 318 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (458)
+.++..... +..-............++.+++.++.+++.||+|||+++..+..+.+++..++.....
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~----------- 387 (502)
T TIGR00887 319 GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN----------- 387 (502)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 322221100 0000000001122234556678889999999999999998888877777766654420
Q ss_pred CCCchHHHHHHHHHHHHhhHHH-HHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 396 LPPNGIVIAALIIFTILGGPLA-ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 396 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+.. ...... ...+.....+ ...+..+.+.+|.+|+ +.||++.|+.+....++.+++
T Consensus 388 -~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~~p~--~~R~~~~g~~~~~~~~~~~~~ 444 (502)
T TIGR00887 388 -HLS-THGFLA-IYVLAQFFANFGPNATTFIVPGEVFPT--RYRSTAHGISAASGKAGAIIG 444 (502)
T ss_pred -hcc-hhHHHH-HHHHHHHHHhcCCCchhhhhhhccCch--hHHHHHHHHHHHHhhhHHHHH
Confidence 000 111111 1111111111 1234567788999999 899999999999888887765
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-23 Score=196.93 Aligned_cols=333 Identities=13% Similarity=0.097 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
+......+.+|.+.+++|.+..+.++..+++.++..+++++.|+++| |+|||+.++.. .....++.+...+++++
T Consensus 30 ~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~a~~~ 104 (413)
T PRK15403 30 LTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSD----RIGRRPVLITG-ALIFTLACAATLFTTSM 104 (413)
T ss_pred HHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHH----HcCchHHHHHH-HHHHHHHHHHHHHcCCH
Confidence 45556667777888999999999999999999999999999999999 99999988774 45555555666566665
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccc
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (458)
+.+++.|++.|++.+...+...+++.|.+|+++|+ +++++......+|..+|+.+++.+....
T Consensus 105 ---------------~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~lg~~l~~~~ 167 (413)
T PRK15403 105 ---------------TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGI--KLMAIITSIVLVAPIIGPLSGAALMHFV 167 (413)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78889999999988766666778899999999999 9999999999999999999987643222
Q ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcch
Q 012666 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS 284 (458)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (458)
+||+.|++.+++.++..+..++..||++++++++ ...+...++.++.++|
T Consensus 168 ---------------gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~-------------~~~~~~~~~~~~ll~~-- 217 (413)
T PRK15403 168 ---------------HWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP-------------FSAKSVLRDFRNVFRN-- 217 (413)
T ss_pred ---------------CHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCC-------------CChHHHHHHHHHHHcC--
Confidence 8999999988877777666566678764321110 0122334566677787
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhh
Q 012666 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (458)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 364 (458)
|.++...+...+.......+..+.|.++. +.++.++... .+.......+..+++.+.+++.+|..+++.
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~-~~~g~s~~~~----------gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILI-DAGGMTTSQF----------AWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHH-HhcCCCHHHH----------HHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 88888777777766666666666776664 3333322211 122222344555666677776655444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhH
Q 012666 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (458)
......+..++.+++....... ++ +++...+...+++++.+...+...+..- .+. ...+|++.++
T Consensus 287 ~~~~~~~~~ig~~l~~~~~~~~----------~~--~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~-~~~~G~a~a~ 351 (413)
T PRK15403 287 IWRAVPIQLVGLALLIVGNLLW----------PH--VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSN-NLPKGTVSAS 351 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----------cc--cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccC-CCCCcHHHHH
Confidence 4333333333333332221000 11 2333455666777777777665553222 222 1236777777
Q ss_pred HHHHHHhhhhh
Q 012666 445 LNLAIVIPQVS 455 (458)
Q Consensus 445 ~~~~~~~~~~i 455 (458)
.+........+
T Consensus 352 ~~~~~~~~~~~ 362 (413)
T PRK15403 352 LNMVILMVMAV 362 (413)
T ss_pred HHHHHHHHHHH
Confidence 77665554433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=194.05 Aligned_cols=348 Identities=14% Similarity=0.126 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
.+.++.-..........|....+..+.+.+++|+|+.|.+++.++..+.+.+..++.|.+.| |+|.|+...+ +.+
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~d----rfGgR~~~~~-s~~ 87 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTD----RFGGRKWTIL-SML 87 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhc----ccCchHHHHH-HHH
Confidence 34444333333333346677777777777999999999999999999999999999999999 9999998887 555
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
..++..+...++.+. ...+.+++...+.|++.+ .......++++++|+|++| .++|+.. ..|+|
T Consensus 88 l~~IP~~~~~~a~~~------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG--~AlGI~g-~GN~G 151 (417)
T COG2223 88 LLLIPCLGLAFAVTY------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQG--LALGIAG-AGNLG 151 (417)
T ss_pred HHHHHHHHHHHHccC------------CchHHHHHHHHHHhcccc-eehcccccccccCChhhhh--HHHHHhc-ccccc
Confidence 555666656565543 111577777777776644 4566778999999999999 9999999 88999
Q ss_pred HHHHHhhhccccccccccccccccccccccc---hhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccccc
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCAN---LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (458)
..+...++... .... + |+....+..+..++..+..++..+|.|..+...++
T Consensus 152 ~av~q~~~P~v---------~~~~------g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~----------- 205 (417)
T COG2223 152 VAVAQLVAPLV---------AVAF------GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP----------- 205 (417)
T ss_pred HHHHHHHHHHH---------HHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc-----------
Confidence 88887775442 2221 4 88888888888888888888888887654222100
Q ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHH
Q 012666 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (458)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (458)
..+ .+++...++ ++.|.+.+.++..+-++..+..+++.|+. +.|+.++..+ + .......+.+.
T Consensus 206 --~~~--~~~~~v~~~--~~~W~lsllY~~tFG~Fvgfs~~l~~~~~-~~fg~~~~~A---------g-~~a~~f~~~g~ 268 (417)
T COG2223 206 --QLP--AQLKAVFSN--KDTWLLSLLYFATFGGFVGFSAYLPMYLV-TQFGLSPVTA---------G-LIAFLFPLIGA 268 (417)
T ss_pred --cch--hHHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhhH---------H-HHHHHHHHHHH
Confidence 000 345556667 89999999999999999999999999984 5677666553 1 11223456677
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHh
Q 012666 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (458)
Q Consensus 347 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (458)
+.++++|+++||+|.+|++...+..++++..+..+...... ...+.+.....+...++..+......+.+
T Consensus 269 l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~ 338 (417)
T COG2223 269 LARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG----------HGGSFVVFVAVFLALFVFAGLGNGSVFKM 338 (417)
T ss_pred HHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccc----------cCcchHHHHHHHHHHHHHhccCcchheee
Confidence 88899999999999999998888888888877766521000 01134445555555556666666667788
Q ss_pred HHhhhcccccccchhhhHHHHHHHhhhh
Q 012666 427 VSIRTESLGLGQGLSLGVLNLAIVIPQV 454 (458)
Q Consensus 427 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 454 (458)
+..++| ++.|...|+......+|.+
T Consensus 339 Ip~if~---~~~G~v~G~vga~G~lGGf 363 (417)
T COG2223 339 IPVIFP---KETGAVTGIVGAIGGLGGF 363 (417)
T ss_pred chHHHH---hhhhHHHHHHHHhcccccc
Confidence 888888 4788889988888877754
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=198.57 Aligned_cols=313 Identities=19% Similarity=0.203 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHH
Q 012666 37 ASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (458)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~ 116 (458)
....+...+.........|.+.+++|.++.+.+++.+...++..++.++.|+++| |+||||.++. +.....++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d----~~g~r~~~~~-~~~~~~~~~~ 79 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD----RFGRRRVLLL-GLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhCCchhhHH-HHHHHHHHHH
Confidence 3444555667777888899999999999999999999999999999999999999 9999997766 5455555555
Q ss_pred HHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Q 012666 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (458)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (458)
.....++. +.+.+.+.+.|++.+...+...+++.|++|+|+|+ +.+++......+|..+++.+
T Consensus 80 ~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~ 142 (352)
T cd06174 80 LLAFASSL---------------WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG--RALGLFSAGFGLGALLGPLL 142 (352)
T ss_pred HHHHhccH---------------HHHHHHHHHHHcccccccHhHHHHHHHhCCccchh--hhhhHHHHHHHHHHHHHHHH
Confidence 55555555 77888999999999999999999999999999999 99999999999999999998
Q ss_pred hccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHH
Q 012666 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 276 (458)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (458)
++...... +|++.+++.++..++..+...+. +
T Consensus 143 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------------- 174 (352)
T cd06174 143 GGLLAESL---------------GWRWLFLILAILGLLLALLLLFL-L-------------------------------- 174 (352)
T ss_pred HHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHH-H--------------------------------
Confidence 87643222 68988988887766665554332 2
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012666 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (458)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 356 (458)
|.++......++..........+.+.+..+. ++.++ ...........+...++.++.+++.
T Consensus 175 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~i~~~~~~~~~ 235 (352)
T cd06174 175 --------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-LGLSA----------AEAGLLLSLFGLGGILGALLGGLLS 235 (352)
T ss_pred --------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666677777777776432 22211 1122334446777889999999999
Q ss_pred HhhcChh-hHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccc
Q 012666 357 RKWGAGF-IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (458)
Q Consensus 357 dr~g~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
||+|+|+ .+..+..+..++.+.....+ +.+...+...+.|++.+...+...++..|..|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-- 296 (352)
T cd06174 236 DRLGRRRLLLLIGLLLAALGLLLLALAP-----------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP-- 296 (352)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH--
Confidence 9999999 88888888888888777663 356677788888999999999999999999999
Q ss_pred cccchhhhHHHHHHHhhhhhcC
Q 012666 436 LGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+.+|+.+|+.+....+++.+++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~~ 318 (352)
T cd06174 297 EARGTASGLFNTFGSLGGALGP 318 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998887653
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=218.55 Aligned_cols=330 Identities=15% Similarity=0.144 Sum_probs=227.8
Q ss_pred HHHHHHHHhCCC---chhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccC
Q 012666 53 LLTPYVQELGIP---HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (458)
Q Consensus 53 ~l~~~~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (458)
+.+.+.++++++ ..+.+++.+++.++..++.++.|+++| |+|||+.+++ +.+...++.+...+++++
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~D----r~Grr~~~~~-~~~~~~i~~~~~~~~~~~----- 180 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSD----RFGRKKVLLL-STLVTAVSGVLTAFSPNY----- 180 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhh----hccchHHHHH-HHHHHHHHHHHHHHcccH-----
Confidence 456666889998 889999999999999999999999999 9999998877 444555555556677776
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccc
Q 012666 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209 (458)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~ 209 (458)
+.+++.+++.|++.+...+...+++.|++|+++|+ ++.++......+|.++++.++...
T Consensus 181 ----------~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~--------- 239 (505)
T TIGR00898 181 ----------TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRA--IVGTLIQVFFSLGLVLLPLVAYFI--------- 239 (505)
T ss_pred ----------HHHHHHHHHHHhhccchHHHHHHHhheecChhhhH--HHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 88889999999999999999999999999999999 999999999999999988876542
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc---------------cc--ccc-cch--H
Q 012666 210 LTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE---------------GH--EQS-SDV--H 269 (458)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---------------~~--~~~-~~~--~ 269 (458)
.+||+.+++.++..++..+.. +++||+|+....+.+.++.. ++ +.. +++ +
T Consensus 240 ---------~~wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (505)
T TIGR00898 240 ---------PDWRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSS 309 (505)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhh
Confidence 169999998887766655554 67888875422111111000 00 000 000 0
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHH
Q 012666 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (458)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (458)
+......++.+++ +.++...+...+.++.........+.+. ..++.+ . .......++..+++.
T Consensus 310 ~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------~-~~~~~~~~~~~i~~~ 372 (505)
T TIGR00898 310 SKKQYSFLDLFRT--PNLRKTTLCLMMLWFTTAFSYYGLVLDL--GNLGGN------------I-YLDLFISGLVELPAK 372 (505)
T ss_pred ccCCCcHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHhccc--cccCCC------------h-HHHHHHHHHHHHHHH
Confidence 0000133455555 6666655555444443322221122111 111111 1 122334567778889
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHh
Q 012666 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (458)
Q Consensus 350 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (458)
++.+++.||+|||+.+.++.++.+++.+++.+.+ .. ..+.......+.+++.+..++..+.+.+|
T Consensus 373 ~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 437 (505)
T TIGR00898 373 LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP--------------VD-LYFLRTALAVLGKFGITSAFQMVYLYTAE 437 (505)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC--------------CC-chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998888888877766652 11 12334444555566666677788899999
Q ss_pred hhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 430 RTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 430 ~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.+|+ +.|++++|+.+....+|.+++.
T Consensus 438 ~~p~--~~r~~~~g~~~~~~~ig~~i~p 463 (505)
T TIGR00898 438 LYPT--VVRNLGVGVCSTMARVGSIISP 463 (505)
T ss_pred cccH--HHHhhhHhHHHHHHHHHHHHHh
Confidence 9999 8889999999999999887763
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=207.06 Aligned_cols=359 Identities=13% Similarity=0.083 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
....+....+...+........+|.+.+++|.+..+.+++.+...++..++.++.|+++| |+|||+.++. +.+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~ 95 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGD----RYGRRLAMVI-SIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHH-HHHHH
Confidence 344445555555566677777888888999999999999999999999999999999999 9999998776 44445
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (458)
.++.+...+.+++ +.+.+.+.+.|++.+...+...+++.|.+|+++|+ ++.++......+|..
T Consensus 96 ~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~ 158 (496)
T PRK03893 96 SVGTLACGFAPGY---------------WTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRN--KASGFLISGFSIGAV 158 (496)
T ss_pred HHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHH
Confidence 5555666566665 77888999999999998999999999999999999 999999999999999
Q ss_pred HHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccc-ccchHH
Q 012666 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ-SSDVHE 270 (458)
Q Consensus 192 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~ 270 (458)
+++.+++..... .+|++.|++.++..+ ..++.....||+++.+++++++++.++..+ ....++
T Consensus 159 ~~~~~~~~l~~~---------------~~w~~~f~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (496)
T PRK03893 159 VAAQVYSLVVPV---------------WGWRALFFIGILPII-FALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH 222 (496)
T ss_pred HHHHHHHHHhcc---------------CCHHHHHHHHHHHHH-HHHHHHHhCCCchhhhhhccccccchhHHHHHhcchh
Confidence 999987763322 289998887543332 233333445554332111111100000000 000000
Q ss_pred HHHHH---------HHHHHhcc----------------------------hHHHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 012666 271 AFLWE---------LFGTFRYF----------------------------SGTIW-IILIVTALTWLGWFPFLLFDTDWM 312 (458)
Q Consensus 271 ~~~~~---------~~~~~~~~----------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
..... ....+... +.... ......+...........+.+.|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l 302 (496)
T PRK03893 223 RIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYL 302 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 00000 00000000 00000 000000000001112234556665
Q ss_pred hceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 012666 313 GREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR 392 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (458)
.+ .++.++ ...........++.+++.++.|++.||+|+|+.+..+..+..+..+......
T Consensus 303 ~~-~~g~~~----------~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--------- 362 (496)
T PRK03893 303 KT-DLGYDP----------HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG--------- 362 (496)
T ss_pred Hh-hcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc---------
Confidence 32 222221 1122333446777888999999999999999988877666555544333221
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 393 GHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
. .+.+.......+.+.......+...+++.|.+|+ +.+|+.+|+.+....++..++
T Consensus 363 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~lg 418 (496)
T PRK03893 363 -----G-ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT--EQRAAGLGFTYNVGALGGALA 418 (496)
T ss_pred -----c-cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH--HHhhcccchhhhhhhHHHHHH
Confidence 1 0222222222222222222234556788899998 788999998888877776654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-22 Score=193.35 Aligned_cols=326 Identities=15% Similarity=0.099 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcC-----CCcchhHHHHHHHHH
Q 012666 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-----GRRRPFIVCGAISIA 112 (458)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~-----Grr~~~~~~~~~~~~ 112 (458)
..++.+..........+|.++++.|+|.+++|++..+... .+..+++|+++| |+ ||||.++..+.+..+
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~D----r~~~~~~g~rr~~l~~~~~~~~ 79 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMD----RYTPPLLGRRRGWLLLTQVGLA 79 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHH----cccccCCCcchhHHHHHHHHHH
Confidence 3445566777888889999999999999999999777765 688999999999 76 898877776766666
Q ss_pred HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Q 012666 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (458)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (458)
++...+.+.+.. ..++.+.+..++.++..+...++..+++.|++|+++|+ ++.++...+..+|..+
T Consensus 80 l~~~~l~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~--~~~~~~~~g~~~g~i~ 145 (402)
T PRK11902 80 ASIAAMAFCPPH------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERG--AGAAVKVLGYRLAMLV 145 (402)
T ss_pred HHHHHHHhcCcc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh--HHHHHHHHHHHHHHHH
Confidence 666665554321 12355555556667778888889999999999999999 9999999999999999
Q ss_pred HHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHH
Q 012666 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (458)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (458)
++.+++.+.... .+||..|++.+++.++..+. .+..||++++++++ ++ .+++.
T Consensus 146 g~~l~~~l~~~~--------------~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~-------~~-----~~~~~ 198 (402)
T PRK11902 146 SGGLALWLADRV--------------LGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPP-------RS-----LGEAV 198 (402)
T ss_pred HhHHHHHHHhcc--------------cCHHHHHHHHHHHHHHHHHH-HHhcCCCccccccc-------ch-----hHHHH
Confidence 988766532110 28999999988776655443 45566654321111 00 01122
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHH---HHHHHHHHH
Q 012666 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML---NSVVLGITS 349 (458)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 349 (458)
.+++++.+++ |.++.+++..++..........+.+.++.++ ++.++ ...+... ..++.+++.
T Consensus 199 ~~~~~~l~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-~G~~~------------~~~g~~~~~~~~~~~i~g~ 263 (402)
T PRK11902 199 VGPLRDFFSR--RGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-AGFSA------------GEVGIVNKTLGLAATIVGA 263 (402)
T ss_pred HHHHHHHHhC--cCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCH------------HHHHHHHhHHHHHHHHHHH
Confidence 3345566666 6777666655555443332222333333221 22221 1222332 233467888
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHH----HHHhhHHHHHhhchhH
Q 012666 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIF----TILGGPLAITYSVPYA 425 (458)
Q Consensus 350 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~ 425 (458)
++.+++.||+|+|+.+..+..+..+..+.+...... ++ +.+.+.+.. +..|++.+...+....
T Consensus 264 ~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 330 (402)
T PRK11902 264 LAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-----------PK--HLWTMALAIGIENLCGGMGTAAFVALLMA 330 (402)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----------CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877666655554444322100 11 233333333 2345555555666666
Q ss_pred hHHhhhcccccccch
Q 012666 426 LVSIRTESLGLGQGL 440 (458)
Q Consensus 426 ~~~~~~~~~~~~~g~ 440 (458)
++.+..|. +.++.
T Consensus 331 ~~~~~~~~--~~~~~ 343 (402)
T PRK11902 331 LCNRSFSA--TQYAL 343 (402)
T ss_pred hcCCCCcH--HHHHH
Confidence 66666665 44443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-23 Score=196.14 Aligned_cols=354 Identities=12% Similarity=0.113 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
..+.+....+....++....+++|.++ +++|.++.+.+++.++..+...+++|+.|+++| |+||||.++......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D----r~grr~~~~~~~~~~ 78 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISD----KLGLKKHLLWIISGL 78 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHHHHH
Confidence 345555556666677788888999987 568999999999999999999999999999999 999999987644333
Q ss_pred HHHHHHH--HhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 111 IAVAVLL--IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 111 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
....... ....+.. .........+.+.+.+++.+...+....+..|..+ +++ ...+......++
T Consensus 79 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~--~~~g~~~~~~~~ 144 (396)
T TIGR00882 79 LVLFAPFFIYVFGPLL----------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSN--FEYGKARMFGCV 144 (396)
T ss_pred HHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcc--cccchhhhhccc
Confidence 2222211 1111100 00011334455666777777777777777666533 234 455667777788
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccch
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (458)
|..+++.+++.+.. .+|+..|++.+++.++..++.+...||+++++.++ ++.++++++
T Consensus 145 g~~~g~~~~g~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-- 202 (396)
T TIGR00882 145 GWALCASIAGILFS----------------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVA----NALGANASA-- 202 (396)
T ss_pred HHHHHHHHHhhhhc----------------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh----cccccccCC--
Confidence 99999988776421 17899998888777766655554445443221111 000000101
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHH
Q 012666 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (458)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (458)
+..++..+.+|+ |+++.+++..+.....+.....+.+.|+.+.. .. . + .+............+...++
T Consensus 203 --~~~~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~-~~-~----~--~~~~~~g~~~~~~~i~~~~~ 270 (396)
T TIGR00882 203 --FSLKLALELFRQ--RKFWMFVLYVVGVACVYDVFDQQFANFFTSFF-AT-P----Q--QGTRVFGYVTTMGELLNALI 270 (396)
T ss_pred --CCHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-c----c--cchHHHHHHHHHHHHHHHHH
Confidence 112345666777 67766655555544444444344555553221 10 0 0 01111112223345666777
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHH
Q 012666 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (458)
Q Consensus 349 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (458)
.+..+++.||+|+|+.+.++..+.++...+....+ +.+.+.+...+.|++..........+..
T Consensus 271 ~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 271 MFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT-----------------TALEVVILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888888777776655442 3455566667777776655555555666
Q ss_pred hhhcccccccchhhhH-HHHHHHhhhhhc
Q 012666 429 IRTESLGLGQGLSLGV-LNLAIVIPQVSS 456 (458)
Q Consensus 429 ~~~~~~~~~~g~~~g~-~~~~~~~~~~i~ 456 (458)
+..|+ |.+++..+. ++....+|+.++
T Consensus 334 ~~~~~--~~~at~~~~~~~~~~~lg~~~~ 360 (396)
T TIGR00882 334 SQFDV--RLSATIYLIGFQFAKQLAMIFL 360 (396)
T ss_pred HhCCc--ceEEEeehHHHHHHHHHHHHHH
Confidence 66676 666666555 566666665554
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-22 Score=193.40 Aligned_cols=321 Identities=12% Similarity=0.072 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHH-HHHHHHHHHHHH
Q 012666 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC-GAISIAVAVLLI 118 (458)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~-~~~~~~~~~~~~ 118 (458)
.++..++.+...+++|.+.+++|.|..++|++.+++.+...+++|+.|+++| |+|||+...-. .....+......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~d----r~g~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVK----DPSQLIPALRLLALLTLLFAVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHh----hhcchHHHHHHHHHHHHHHHHHHH
Confidence 4555567788889999999999999999999999999999999999999999 99984321111 111111122222
Q ss_pred hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhc
Q 012666 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (458)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (458)
...+++ +.+++.+.+.+++.+...+...++..++ .++|+ ++.+......++|..+|+.+++
T Consensus 89 ~~~~~~---------------~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~--~a~~~~~~~~~lg~~igp~lgg 149 (382)
T PRK11128 89 FGAHSF---------------WLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIG--LDYGKVRLWGSIAFVIGSALTG 149 (382)
T ss_pred HhcccH---------------HHHHHHHHHHHHHHcccccHHHHHHHHH--Hhhcc--CCcchHHHHHHHHHHHHHHHHH
Confidence 223333 6777788888888888888888887776 35567 7788888888999999999988
Q ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHH
Q 012666 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFG 278 (458)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (458)
.+.... +|+..|++.++..++..+ ..+..||++++++++ ++.+ +..++.++
T Consensus 150 ~l~~~~---------------g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~------~~~~~~~~ 200 (382)
T PRK11128 150 KLVSWF---------------GEQAILWILTAGVASMLL-GQLLRPTIMPQGESR-------QQES------AGWPAWKA 200 (382)
T ss_pred HHHHHc---------------ChhHHHHHHHHHHHHHHH-HHHccCCCCCccccc-------cccc------cccchHHH
Confidence 754332 899999877755444333 333444432211110 0000 00123455
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012666 279 TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 358 (458)
.+|+ |+++.++...++.......+..+.+.|+.+ .+.+... .+ .......+..++..++.+++.||
T Consensus 201 i~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~g~s~~~---------~g-~~~~~~~~~~~~~~~~~g~l~~r 266 (382)
T PRK11128 201 LLKE--PTVWRFLLCVSLLQGSHAAYYGFSAIYWQA--AGYSAST---------IG-YLWSLGVVAEVLIFAFSNRLFRR 266 (382)
T ss_pred HHcC--hhHHHHHHHHHHHHHHhHhHHHHHHHHHHH--CCCCHhH---------HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 788887777777666666666777777632 2222111 11 12223456677788899999999
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccccccc
Q 012666 359 WGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (458)
Q Consensus 359 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (458)
+|+|+.+..+.+..+++.+++...+ +.+..++..++.|++.+...+....+..+. ++ +++
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~--~~~ 326 (382)
T PRK11128 267 WSARDLLLLSAICGVVRWGLMGSTT-----------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG--SEV 326 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH--hhh
Confidence 9999999888888888777665553 456667788888998888777777777775 44 445
Q ss_pred chhhhHHH
Q 012666 439 GLSLGVLN 446 (458)
Q Consensus 439 g~~~g~~~ 446 (458)
++..++.+
T Consensus 327 ~~~~~~~~ 334 (382)
T PRK11128 327 IRLQALYS 334 (382)
T ss_pred HHHHHHHH
Confidence 77888776
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=200.71 Aligned_cols=354 Identities=11% Similarity=0.071 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
..+......+...++++...+++|.++++ +|+|+.+.|++.++..+...+++|+.|+++| |+||||.+++...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~D----r~g~r~~~~~~~~~~ 86 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISD----KLGLKKHLLWIISGL 86 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHHHHH
Confidence 34444445555566677788899998854 9999999999999999999999999999999 999999887643332
Q ss_pred HHHHHHHHhh--ccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 111 IAVAVLLIGL--SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 111 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
.......... .+.. .........++....+.+.....+....+..+. +++++ +..+......++
T Consensus 87 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g--~~~g~~~~~~~~ 152 (420)
T PRK09528 87 LVLFGPFFIYVFAPLL----------QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSG--FEYGRARMWGSL 152 (420)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--Hhhcc--ccchhhHHhhhH
Confidence 2221111111 1000 000001111222222222222222223332221 23455 677888888899
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccch
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (458)
|..+++.+++.+.. .+|+..|++.+++.+++.++.++..+|++++++.+ +++ ++++
T Consensus 153 g~~i~~~~~g~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~---- 208 (420)
T PRK09528 153 GWALCAFIAGILFN----------------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA--NAL--GANA---- 208 (420)
T ss_pred HHHHHHHHHHHHHh----------------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhc--cch--hccc----
Confidence 99999988776321 16888888887776666555544444433221111 000 0000
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHH
Q 012666 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (458)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (458)
++...++.++.+|+ |+++.+.+........+.....+.+.|+.+. ++... .+............+...++
T Consensus 209 ~~~~~~~~~~~l~~--~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~g~~~~~~~~~~~~~ 278 (420)
T PRK09528 209 SAVSLKDALALLKL--PKFWFLVLYVIGVACFYDVFDQQFPNFFASF-FATPE-------QGTRVFGYLNSFQVFLEALI 278 (420)
T ss_pred ccccHHHHHHHccC--CCeEeehHHHHHHHHHHHHHHHHHHHHHHHH-HhccC-------cchHHHHHHHHHHHHHHHHH
Confidence 11123445556666 6666555444444333333333445544321 11000 01011112233345666788
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHH
Q 012666 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (458)
Q Consensus 349 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (458)
.++.|++.||+|+|+.+..+.++.+++..+..+.+ +.+..+....+.+++.+...+....++.
T Consensus 279 ~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 341 (420)
T PRK09528 279 MFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT-----------------GPLEVSILKLLHAFEVPFLLVGVFKYIT 341 (420)
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999888888888777766553 3455566677777777777667778889
Q ss_pred hhhcccccccchhhhH-HHHHHHhhhhhc
Q 012666 429 IRTESLGLGQGLSLGV-LNLAIVIPQVSS 456 (458)
Q Consensus 429 ~~~~~~~~~~g~~~g~-~~~~~~~~~~i~ 456 (458)
|..|+ +.+++..+. +|....+|.+++
T Consensus 342 ~~~~~--~~~a~~~~~~~~~~~~lg~~ig 368 (420)
T PRK09528 342 LNFDV--RLSATIYLVGFQFAKQLGAVFL 368 (420)
T ss_pred HHcCc--cceeeeeeehHHHHHHHHHHHH
Confidence 99988 667766554 566666665553
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=193.46 Aligned_cols=337 Identities=12% Similarity=0.068 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (458)
++.++..++...+......+.+|.+.+++|.++.+.|++.+...++..+++++.|++.| |+|||+.++. +.....
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~----r~G~r~~~~~-g~~l~~ 79 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMK----KLSYKAGILL-GLFLYA 79 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHH-HHHHHH
Confidence 44556666666677778888999999999999999999999999999999999999999 9999998877 444455
Q ss_pred HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Q 012666 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (458)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (458)
++......+.. ...++.+++.+++.|++.+...+..+.++.+..|+++|+ +..++.+...++|..+
T Consensus 80 ~g~~l~~~~~~------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~~ 145 (410)
T TIGR00885 80 LGAFLFWPAAE------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTAT--RRLNLAQSFNPFGSII 145 (410)
T ss_pred HHHHHHHHHHh------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHH--HHHHHHHHHHHHHHHH
Confidence 55444322211 112277888999999999999999999999999999999 8999999999999999
Q ss_pred HHhhhccccccccccc-----------cccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccc
Q 012666 193 GYATGSFSGWFKILPF-----------TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG 261 (458)
Q Consensus 193 g~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 261 (458)
++.+++.......-+. ...........+||+.|.+.+++.++..++.. +.++++.+++++ +
T Consensus 146 g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~-------~ 217 (410)
T TIGR00885 146 GMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDA-------K 217 (410)
T ss_pred HHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccc-------c
Confidence 9998765311100000 00000001123799999888876655544432 222221111000 0
Q ss_pred cccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHH
Q 012666 262 HEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLN 341 (458)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
++ +. ..+..+.+|+ |+++..++..+++.........|.+.|..+...+.+. + .........
T Consensus 218 ~~----~~---~~~~~~~~~~--~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~--------~--~a~~~~~~~ 278 (410)
T TIGR00885 218 QI----SF---SASLSRLARI--RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTA--------G--FAANYNIGA 278 (410)
T ss_pred cc----cc---hhhHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCH--------H--HHHHHHHHH
Confidence 00 00 1122344555 6777766666776666666677788777432211110 1 111112222
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhh
Q 012666 342 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (458)
Q Consensus 342 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (458)
.....+++++.+++.||+++|+++.+..++..++.++....+ + .....++.+.|+..+..+|
T Consensus 279 ~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~--------------~----~~~~~~l~~~glf~s~~fp 340 (410)
T TIGR00885 279 MVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG--------------G----HVGLYCLTLCSAFMSLMFP 340 (410)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--------------C----hHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999998887777777766666542 1 2235667777888888889
Q ss_pred chhHhHHhhhcc
Q 012666 422 VPYALVSIRTES 433 (458)
Q Consensus 422 ~~~~~~~~~~~~ 433 (458)
..+++..+..++
T Consensus 341 ~i~sl~~~~~g~ 352 (410)
T TIGR00885 341 TIYGIALKGLGQ 352 (410)
T ss_pred HHHHHHHhhhhh
Confidence 999999999987
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=205.46 Aligned_cols=332 Identities=11% Similarity=-0.001 Sum_probs=214.2
Q ss_pred HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhc--cccccccCCCCCCCch
Q 012666 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS--ADIGWLLGDRGDFRPR 137 (458)
Q Consensus 60 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 137 (458)
+++.+..+.|++.+.+.+++.+++++.|+++| |+|||+.+.....+ ..++.++..+. .++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~l~~~~~~-~~~~~~~~~~~~~~~~------------- 131 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAG----KYVFKWSIGIGMFL-SSVISIVIPWAAGGGI------------- 131 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHH----HhCcchhhHHHHHH-HHHHHHHHHHHHHcCc-------------
Confidence 68899999999999999999999999999999 99999988774443 33333333222 222
Q ss_pred hHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Q 012666 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217 (458)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 217 (458)
+.+++.+++.|++.+...+....++.|++|+++|+ +++++......+|..+++.+++.+.+..
T Consensus 132 --~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~i~~~l~~~l~~~~------------- 194 (465)
T TIGR00894 132 --ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS--RLLGMSTSGFQLGTFIFLPISGWLCESW------------- 194 (465)
T ss_pred --hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 67888999999999999999999999999999999 9999999999999999999977643320
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc--ccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 012666 218 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE--GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTA 295 (458)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (458)
.+|++.|++.+++.++..++.+.+.+|+|+..+++.+++++. +..++++++.+....+++.+++ +.+|...+..+
T Consensus 195 -~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 271 (465)
T TIGR00894 195 -GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKS--LPVWAIWFAIF 271 (465)
T ss_pred -CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcC--HHHHHHHHHHH
Confidence 189999999988877776666666777664332221111000 0000000000001124455666 78888888888
Q ss_pred HHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhH--------HH
Q 012666 296 LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW--------GI 367 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~--------~~ 367 (458)
+.......+..|.|.|+.+ .++.+... ..+......++..++.++.|+++||+++|+.. ..
T Consensus 272 ~~~~~~~~~~~~lp~~l~~-~~g~s~~~----------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 340 (465)
T TIGR00894 272 GHFWLYTILPTYLPTFISW-VLRVSGKE----------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN 340 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCcChHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 8888888888889988853 33333322 12223334666788899999999998654321 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHH
Q 012666 368 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 447 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 447 (458)
+......+..++.... . .. ..+..++.+.+.+.+.+...+.......|..| +..|...|+.|+
T Consensus 341 ~~~~~~~~~~~~~~~~----~--------~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~g~~~g~~~~ 403 (465)
T TIGR00894 341 GIGGLGPGIFAYALPY----L--------SA--AFYLTIIILTLANAVSSGPLAGVLINSLDLAP---RFLGFIKGITGL 403 (465)
T ss_pred HHHHHHHHHHHHHHHH----c--------CC--chHHHHHHHHHHHHHhhhhhhhhhhchhhcCh---hHHHHHHHHHHH
Confidence 1111111111111110 0 00 22233333444444444333344445555554 578999999999
Q ss_pred HHHhhhhhcC
Q 012666 448 AIVIPQVSSC 457 (458)
Q Consensus 448 ~~~~~~~i~~ 457 (458)
...++.++++
T Consensus 404 ~~~l~~~i~p 413 (465)
T TIGR00894 404 PGFIGGLIAS 413 (465)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-22 Score=216.56 Aligned_cols=355 Identities=14% Similarity=0.079 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhCCCc--hhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHH
Q 012666 36 VASVAGGIQFGWALQLS-LLTPYVQELGIPH--AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~-~l~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (458)
+.+..+...++...... ..+.+..+++.+. ...+++.+++.++..++++++|+++| |+|||+++++...+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~D----r~grk~~l~~~~~~~~~ 89 (1146)
T PRK08633 14 LLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLAD----KFSKNRVIRIVKLFEVG 89 (1146)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcc----cccHHHHHHHHHHHHHH
Confidence 33344444443333333 3334445566554 34688889999999999999999999 99999988774433222
Q ss_pred HHHHHH--hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 113 VAVLLI--GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 113 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
...+.. ...+++ +.+++.+++.|++.+...++..+++.|++|+++|+ +++++......+|.
T Consensus 90 ~~~~~~~~~~~~~~---------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~ig~ 152 (1146)
T PRK08633 90 LTLLIVLAYYLGWF---------------WLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLS--RANGLLEAFTIVAI 152 (1146)
T ss_pred HHHHHHHHHHHccH---------------HHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccch--hhhhHHHHHHHHHH
Confidence 222221 122333 78889999999999999999999999999999999 99999999999999
Q ss_pred HHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHH
Q 012666 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 270 (458)
Q Consensus 191 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
++|+.+++++......+ ......++.+.+.+..+...+..++..+.+||.+.....+. ++ +.....+
T Consensus 153 ~lg~~l~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~ 219 (1146)
T PRK08633 153 LAGTALFSFLFESVNGN------TPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF--DK-----KKYLFPK 219 (1146)
T ss_pred HHHHHHHHHHHHhhccc------cccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc--cc-----cccccHH
Confidence 99999988743210000 00000134444444443333344444455676654322211 00 0001112
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHH
Q 012666 271 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (458)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (458)
...+.+...+++ +.++..++..++.+........+.+.|+.+. ++.+.. . ...+......++.+++.+
T Consensus 220 ~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~--------~-~~g~~~~~~~ig~~~g~~ 287 (1146)
T PRK08633 220 LLWRNLKLLRSD--RVLWLAIIGLSYFWFISQLAQANFPAYAKEV-LGLDNT--------F-QVQYLLAASAIGIGIGSL 287 (1146)
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hCCCcH--------H-HHHHHHHHHHHHHHHHHH
Confidence 223334444555 6667666666665555555556666666422 332221 0 112333445677788899
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhh
Q 012666 351 LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (458)
Q Consensus 351 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (458)
+.+++.||+++++.+.++.++.+++.+++.+.. +.+..++..+++|++.+...+...+++.+.
T Consensus 288 ~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 350 (1146)
T PRK08633 288 LAGRLSGRHIELGLVPLGALGLALSLFLLPTAP-----------------SLASVLVLFFLFGFSAGLFIVPLNALIQFR 350 (1146)
T ss_pred HHHHHhCCceEccchhHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Confidence 999999999999888888877777776666553 455666777888888888888888999999
Q ss_pred hcccccccchhhhHHHHHHHhhhhh
Q 012666 431 TESLGLGQGLSLGVLNLAIVIPQVS 455 (458)
Q Consensus 431 ~~~~~~~~g~~~g~~~~~~~~~~~i 455 (458)
.|+ +.+|+++|+.+++..++.++
T Consensus 351 ~p~--~~rg~~~~~~~~~~~lg~~~ 373 (1146)
T PRK08633 351 APE--KELGKVLAANNFLQNVGMLL 373 (1146)
T ss_pred CCc--cchhhhhHHHHHHHHHHHHH
Confidence 998 88999999999888887754
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=193.83 Aligned_cols=339 Identities=20% Similarity=0.216 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHH
Q 012666 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (458)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~ 117 (458)
......+++..+....++-+..++.-|+...+++..+..+...+..+++|.++| |+.|||.++..-.+..++...+
T Consensus 17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laD----r~drrrili~~~~~~~~~~~~L 92 (524)
T PF05977_consen 17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALAD----RFDRRRILILSQLLRALVALLL 92 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHHHHHHH
Confidence 344455666677766777777777889999999999999999999999999999 9999999888665544433333
Q ss_pred HhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 012666 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (458)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (458)
..+. . ......+.+++..++.|++.+...|+..++++|++|+++.. .++++.+...++..++||.++
T Consensus 93 ~~l~-~----------~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~--~A~al~s~~~niar~iGPalg 159 (524)
T PF05977_consen 93 AVLA-F----------FGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLP--AANALNSISFNIARIIGPALG 159 (524)
T ss_pred HHHH-H----------hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHH--HHHHHHHHHHHHHHhccchHH
Confidence 2221 1 11123467778888899999999999999999999999999 899999999999999999999
Q ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHH
Q 012666 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 277 (458)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (458)
|.+.... |..+.|.+.++..++..+.. ...+.++.+++.+ +++..++++
T Consensus 160 G~Lva~~---------------G~~~~f~inalsfl~~i~~l-~~~~~~~~~~~~~---------------~e~~~~~l~ 208 (524)
T PF05977_consen 160 GILVAFF---------------GAAAAFLINALSFLISILAL-LRWKPPPPPSSLP---------------RERFFSALR 208 (524)
T ss_pred HHHHHHH---------------HHHHHHHHHHHHHHHHHHHH-HHccccccccccc---------------hhhhhhhHH
Confidence 9854322 66777887776655544333 3333222111111 112223333
Q ss_pred HHHhcc--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHH--HHHHHHHHHHHHHHH
Q 012666 278 GTFRYF--SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGL--MLNSVVLGITSVLME 353 (458)
Q Consensus 278 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g 353 (458)
+.+|.. .|.++..++..++..+....+....|.+.. +.++.++ ..+++ ...+++.++++++.+
T Consensus 209 ~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~-~~l~~~a------------~~yGll~a~~gvGai~Gal~~~ 275 (524)
T PF05977_consen 209 EGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFAR-DVLGGGA------------SGYGLLLAAFGVGAILGALLLP 275 (524)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHH-HHhCCcH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333221 155555555444444444444444555543 3333222 12333 346788889999999
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcc
Q 012666 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (458)
Q Consensus 354 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (458)
++.+|+++++++..+.++.+++++.+.+.+ +.+..++.+++.|+++....+...+.+.+..|+
T Consensus 276 ~l~~~~~~~~lv~~~~~~~a~~~~~lal~~-----------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~ 338 (524)
T PF05977_consen 276 RLRRRLSSRRLVLLASLLFALALLLLALSP-----------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD 338 (524)
T ss_pred HhhcccCcchhhHHHHHHHHHHHHHHhcch-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 999999999988888888888888877764 567777888889999999888888999999999
Q ss_pred cccccchhhhHHHHHHHhhhhhc
Q 012666 434 LGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 434 ~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+.+|+.++++++....+..++
T Consensus 339 --~~~GRv~si~~~~~~g~~~lG 359 (524)
T PF05977_consen 339 --WVRGRVFSIYQMVFFGGMPLG 359 (524)
T ss_pred --HHHhHHHHHHHHHHHHHHHHH
Confidence 889999999888777666554
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-22 Score=192.75 Aligned_cols=373 Identities=12% Similarity=0.077 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCc-CCCcchhHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVCG 107 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r-~Grr~~~~~~~ 107 (458)
++.++.+....+...++++....+++.|+ +++|++..+.+++...+.....+..+++|+++| | +||||.++++.
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laD----r~~G~r~~~~~g~ 88 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGD----HLLGTKRTIVLGA 88 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhh----hccchHHHHHHHH
Confidence 45566666666677788888888888887 679999999999999999888888999999999 8 99999998855
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccccc--chhhhhhHHHHHH
Q 012666 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH--RRTRVANAYFSLF 185 (458)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~ 185 (458)
.+ ..++.+...++++. ...+++++.+.+++.+...+...+++.|.+|+++ |. ++.++....
T Consensus 89 ~~-~~~g~~~~~~~~~~--------------~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~--~~~~~~~~~ 151 (489)
T PRK10207 89 IV-LAIGYFMTGMSLLK--------------PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLD--GAFTLFYMS 151 (489)
T ss_pred HH-HHHHHHHHHHhccc--------------hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhh--cchhHHHHH
Confidence 55 44554544454432 0234467888899999999999999999998875 35 689999999
Q ss_pred HHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccc-
Q 012666 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ- 264 (458)
Q Consensus 186 ~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~- 264 (458)
.++|..+|+.+++++.... +|++.|++.++..++ .++.+...++..++..++.++++.+....
T Consensus 152 ~nig~~~g~~l~g~l~~~~---------------gw~~~F~i~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 215 (489)
T PRK10207 152 INIGSLISLSLAPVIADKF---------------GYSVTYNLCGAGLII-ALLVYFACRGMVKDIGSEPDHKPMSFSKLL 215 (489)
T ss_pred HHHHHHHHHHHHHHHHHhh---------------ChHHHHHHHHHHHHH-HHHHHHHcchhhcccCCCCCccchhhhhHH
Confidence 9999999999988754332 899999986653333 33333333433211110100000000000
Q ss_pred ----------------ccchHHHH--------------HHHHH---HHHhcchHHHHHHH--HHHHHHHHHHHHHHHhhh
Q 012666 265 ----------------SSDVHEAF--------------LWELF---GTFRYFSGTIWIIL--IVTALTWLGWFPFLLFDT 309 (458)
Q Consensus 265 ----------------~~~~~~~~--------------~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 309 (458)
.+...... ..+.+ +.+|+ |.+.... +...+.+..+.......+
T Consensus 216 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~--r~~~~~~l~~~~~~f~~~~~q~~~~l~ 293 (489)
T PRK10207 216 LVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRN--KMFVAFVLMLEAVVFYILYAQMPTSLN 293 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 00000000 00000 11222 2222211 112223333333333344
Q ss_pred hhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhh-------HHHHHHHHHHHHHHHHHH
Q 012666 310 DWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI-------WGISNILMALCFLAMLIL 382 (458)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~~~~~ 382 (458)
.|..+..-+ + . .++ ..... ....++.+..++.+++.+++.||+++|+. +.+|+++.+++++.+...
T Consensus 294 l~~~~~~~~-~--~-~G~--~i~~~-~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~ 366 (489)
T PRK10207 294 FFAINNVHH-E--I-LGF--SINPV-SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAA 366 (489)
T ss_pred HHHHHhccc-c--c-cce--EECHH-HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 444221111 0 0 011 11111 11223445566778888999999998873 667888877777655332
Q ss_pred HHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 383 YYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.....+ . ....+.++.+...++.|+|.+...+...+++.+..|+ +.+|..+|++++...+|+.+++
T Consensus 367 ~~~~~~-----~--~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~--~~~g~~~g~~~l~~~ig~~lg~ 432 (489)
T PRK10207 367 GMWFAD-----A--QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ--HLMGFILGMWFLTQAAAFLLGG 432 (489)
T ss_pred HHhhcC-----C--CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 110000 0 1112456677888899999999999999999999999 9999999999999999888764
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=193.93 Aligned_cols=357 Identities=13% Similarity=0.059 Sum_probs=232.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHH
Q 012666 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (458)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~ 105 (458)
.+.+.+.+..++.........-+.....++...+.+|++++..|++.+...+...+++|+.|+++| |+.||+++.+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLad----ryNR~~v~~v 103 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLAD----RYNRKRVIAV 103 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHh----hcCcceEEee
Confidence 344555566666666666667777777788888899999999999999999999999999999999 9999888777
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHH
Q 012666 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (458)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (458)
+..+..++.+...++.++ |++.+.|.+.|+|.+.+.+..+++++|.+|+++|+ ++++++++.
T Consensus 104 -G~~iW~~Av~~~~fs~~F---------------wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs--~~~~ify~~ 165 (493)
T KOG1330|consen 104 -GIFIWTLAVFASGFSNHF---------------WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRS--RVLGIFYFA 165 (493)
T ss_pred -HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhccchhhhcccchhHhhhcCcchhhh--HHHHHhhhh
Confidence 666677777766676665 99999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccc
Q 012666 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265 (458)
Q Consensus 186 ~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 265 (458)
..+|..+|.+.+....... ..|||.|...+++.+++.++..++.+|+++...++.+.+.+.
T Consensus 166 ipvGsglG~vvgs~va~~~--------------~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~----- 226 (493)
T KOG1330|consen 166 IPVGSGLGYVVGSVVASLT--------------FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM----- 226 (493)
T ss_pred cccccceeEEeeeeeccCc--------------cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC-----
Confidence 9999999988887643222 259999999999999999999999999876543332222111
Q ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ceeccCCCcccccccccchhHHHHHHHHHH
Q 012666 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMG--REIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (458)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
.+.....+++++...++ +.+..-.+......+....+..+.+.+.. .+.-+.+. . .+.+...+...
T Consensus 227 ~~~~ts~~kDl~~l~~~--~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~--------~--~~~ifg~vt~~ 294 (493)
T KOG1330|consen 227 VKPFTSVWKDLKVLAKI--KVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDH--------N--ATLIFGGVTCA 294 (493)
T ss_pred CCCccchHHHHHHHHcc--CceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCcc--------c--cchhhhhHHHh
Confidence 12234456666666665 33332222222222222222222222221 11111111 1 11122233466
Q ss_pred HHHHHHHHHHHHHHhhcCh----hhHHHHHHHHH-------HHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHH
Q 012666 344 VLGITSVLMEKLCRKWGAG----FIWGISNILMA-------LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTIL 412 (458)
Q Consensus 344 ~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (458)
++.++.+++|.++||+.++ .......+..+ ..+.+.... +. ......+.++++
T Consensus 295 ~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~--------------~~--~s~~~~~il~~~ 358 (493)
T KOG1330|consen 295 GGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF--------------TS--SSMIFGLILFLV 358 (493)
T ss_pred hchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh--------------hh--HHHHHHHHHHHH
Confidence 6778888888888884321 12222222211 111111111 11 223344455555
Q ss_pred hhHHHHHh-hchhHhHHhhhcccccccchhhhHHHHHHHhhh
Q 012666 413 GGPLAITY-SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQ 453 (458)
Q Consensus 413 g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 453 (458)
|....... ....-+..+++|+ +.|.++.++...+..+-.
T Consensus 359 g~~~~~~~~a~n~~i~l~vV~p--~~Rt~a~a~~~~~~h~fg 398 (493)
T KOG1330|consen 359 GETISWFNWATNNPIFLEVVPP--SRRTTAYALDTVFEHIFG 398 (493)
T ss_pred HHHHHhcccccccceeeEecCc--ccccHHHHHHHHHHHHhc
Confidence 65554444 3334577788899 778887777666655443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-22 Score=192.15 Aligned_cols=371 Identities=13% Similarity=0.133 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchhhHHHHhhhhhhhhhhccccceeccccCCc-CCCcchhHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE---LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVC 106 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r-~Grr~~~~~~ 106 (458)
+.++.+....+...++++...+++|.|+++ +|++..+.+++.+.+.+...++++++|+++| | +||||.+++
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laD----r~~G~~~~l~~- 84 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGD----RVWGTKKTMVL- 84 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH----hhcchHHHHHH-
Confidence 334555556666678888888999999854 8999999999999999999999999999999 8 899998887
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccccc---chhhhhhHHHH
Q 012666 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH---RRTRVANAYFS 183 (458)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~ 183 (458)
+.+...++.++..+.++. +.+.+.+.+.+++.+...+...+++.|++|+++ |+ ++.++..
T Consensus 85 ~~~~~~~g~~~~~~~~~~---------------~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~ 147 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYP---------------DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRD--GGFTLFY 147 (475)
T ss_pred HHHHHHHHHHHHHhcccH---------------hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccccc--ceehhHH
Confidence 445566666666555544 566678888899999889999999999998764 77 7899999
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc
Q 012666 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (458)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (458)
...++|..+|+.+++.+.... +|++.|.+.++..++..+.. +..++..++.+++.+..++++++
T Consensus 148 ~~~niG~~ig~~l~g~l~~~~---------------g~~~~f~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 211 (475)
T TIGR00924 148 MSINIGSFISPLLAGVIAENY---------------GYHVGFNLAAVGMVIGLLTF-FAGRHMLRDIGSVPDPLSGQGKT 211 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------ChHHHHHHHHHHHHHHHHHH-HHcccccccCCCCCCCcchhhhh
Confidence 999999999999987643222 89999998876554443333 33332211111110000000000
Q ss_pred cccchHH----------------------HH-------------HHHHH-----HHHhcchHHHHHHHHHHHHHHHHHHH
Q 012666 264 QSSDVHE----------------------AF-------------LWELF-----GTFRYFSGTIWIILIVTALTWLGWFP 303 (458)
Q Consensus 264 ~~~~~~~----------------------~~-------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (458)
...... +. .+... +.-|+....+..+++...+.+..+.-
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q 290 (475)
T TIGR00924 212 -YGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQ 290 (475)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 00000 00011001223333334444444433
Q ss_pred HHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----hhhH--HHHHHHHHHHH
Q 012666 304 FLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA-----GFIW--GISNILMALCF 376 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-----r~~~--~~~~~~~~~~~ 376 (458)
.....+.+..++. +.+.. .+ ....+ ....++.+..++..++..++..|++| +... .+|.++.++++
T Consensus 291 ~~s~l~l~~~~~~-~~~~~---~~--~ip~~-~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~ 363 (475)
T TIGR00924 291 MPTSLNFFADNNM-HHEML---GM--SVPVI-WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASF 363 (475)
T ss_pred hhhHHHHHHHHhc-ccccc---ce--EECHH-HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 3333344432221 11110 11 11122 22334555556665554443333333 3333 67888888888
Q ss_pred HHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 377 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+.+.+......+ +...+.++.++..++.++|.....+..++++.+..|+ +.+|+++|++.+...+|..++
T Consensus 364 ~~~~~~~~~~~~--------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~--~~~g~~~g~~~l~~~~g~~l~ 433 (475)
T TIGR00924 364 LTFAASIWFADA--------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ--RLMGQMLGMWFLAQAMGSLLG 433 (475)
T ss_pred HHHHHHHhhcCC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 777654221111 1123678888999999999999999999999999999 999999999999999988876
Q ss_pred C
Q 012666 457 C 457 (458)
Q Consensus 457 ~ 457 (458)
+
T Consensus 434 ~ 434 (475)
T TIGR00924 434 G 434 (475)
T ss_pred H
Confidence 4
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-22 Score=190.05 Aligned_cols=346 Identities=12% Similarity=0.084 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (458)
.++...+.....+....++++.++ +++|++..+.|++.++..++..+++++.|+++| |+||||..+..+.+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~d----r~g~~r~~~~~~~~~~~~ 81 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIAD----KWLSAQKVYAVCHFAGAL 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccHHHHHHHHHHHHH
Confidence 345556666677888888888887 668999999999999999999999999999999 997755444445444444
Q ss_pred HHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHH----h----hhcccccchhhhhhHHHHHH
Q 012666 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALL----A----DLTGKDHRRTRVANAYFSLF 185 (458)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~ 185 (458)
......+.+++ +.+.+.+.+.+++.+...+...++. . |...+..|. +..|
T Consensus 82 ~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~--r~~G----- 139 (418)
T TIGR00889 82 LLFFAAQVTTP---------------AGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPI--RVMG----- 139 (418)
T ss_pred HHHHHHHhcCH---------------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCe--eeeh-----
Confidence 44444454444 5555666666666555544444432 2 223333444 4444
Q ss_pred HHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccc
Q 012666 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265 (458)
Q Consensus 186 ~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 265 (458)
.+|..+++.+++..... ..|. .|++.+++.++..++ .+.+||.++.+++++ . +
T Consensus 140 -~lG~~ig~~l~g~l~~~---------------~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~------~--~- 192 (418)
T TIGR00889 140 -TIGFIAAMWAVSLLDIE---------------LSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAK------M--S- 192 (418)
T ss_pred -hHHHHHHHHHHHHhccc---------------chhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccc------c--C-
Confidence 35666777666543110 0233 355555555544443 456777643221110 0 0
Q ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHH
Q 012666 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 345 (458)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (458)
.++....+..+.+|+ |+++.+++..++..........+.+.|+.+ .+.++....++ +............+..
T Consensus 193 --~~~~~~~~~~~~~k~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~--~~~~~g~~~~~~~i~~ 264 (418)
T TIGR00889 193 --IKVMLGLDAFILFKN--KRMAIFFFFSMLLGAPLQITNIFGNGFLHE--FGRNPEFADSF--VVKNASIWMSLSQFSE 264 (418)
T ss_pred --HHHHhhhhHHHHhcC--CCeeeHHHHHHHHHhHHHHHHHhHHHHHHH--hcccccccchh--hhhhHHHHHHHHHHHH
Confidence 011111122345566 677766666666555554555566666632 22222110001 1112223344456677
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhH
Q 012666 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 425 (458)
Q Consensus 346 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (458)
+++.++.+++.||+|+|+++..+.++.++++.++.... +.....+.+++..++.|++.+...+....
T Consensus 265 i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~-------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~ 331 (418)
T TIGR00889 265 IFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD-------------PEYFGYALLFLSMIVYGCAFDFFNISGSV 331 (418)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-------------cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999988888776665531 11112344566778888888888888888
Q ss_pred hHHhhhcccccccchhhhHHH-HHHHhhhhhc
Q 012666 426 LVSIRTESLGLGQGLSLGVLN-LAIVIPQVSS 456 (458)
Q Consensus 426 ~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~i~ 456 (458)
++.|.+|+ +.+|+++|+.+ ....+|..++
T Consensus 332 ~i~~~~p~--~~~g~~~g~~~~~~~~lg~~iG 361 (418)
T TIGR00889 332 FVEKEVPV--HIRASAQGLFTLMCNGFGSLLG 361 (418)
T ss_pred HHHHHCCH--HHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999 88999999997 4566666554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=190.40 Aligned_cols=346 Identities=16% Similarity=0.121 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHHHhC--CCchhhHHHHhh-----hhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHh
Q 012666 47 WALQLSLLTPYVQELG--IPHAWASIIWLC-----GPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (458)
Q Consensus 47 ~~~~~~~l~~~~~~~g--~s~~~~~~~~~~-----~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (458)
.+......+.+.++.. .++.+.+.+.+. ..+...+++++.|+++| |+||||.++. +.+...++.....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~~~~~~ 83 (394)
T TIGR00883 9 FYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGD----RIGRKKTLVI-TLLMMGIGTLLIG 83 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh----hhhhHHHHHH-HHHHHHHHHHHHh
Confidence 3333334444444433 445555554443 33344568899999999 9999999887 4455555656665
Q ss_pred hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
+.+++.+ ........+++.+.+.|++.+...+...+++.|++|+++|+ +..+.......+|..+++.++..
T Consensus 84 ~~~~~~~-------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~G~~i~~~~~~~ 154 (394)
T TIGR00883 84 LLPSYAT-------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRG--FYGSFQQVGAPVGLLLAALTVLL 154 (394)
T ss_pred hCCChhh-------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccch--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665410 00111235778899999999999999999999999999999 99999999999999999887654
Q ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 012666 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGT 279 (458)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (458)
.... .. .. .....+||+.|.+.+++.++.. +.....||+++.+.+++++ ++ . .++.++.
T Consensus 155 ~~~~--~~---~~--~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~----~---~~~~~~~ 213 (394)
T TIGR00883 155 LSYL--LG---DD--ALLEWGWRIPFLVSAVLVLIGL-YLRRNLEETPVFEKAQEKH------KK----K---RGPIRET 213 (394)
T ss_pred HHHh--cC---HH--HhhccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHHHHhcc------cc----c---cCCHHHH
Confidence 2110 00 00 0011389999887766554433 3334455554322111000 00 0 0122333
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012666 280 FRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 359 (458)
+++.++.++......++..........+.+.|+.++ ++.++. ..........+...++.++.+++.||+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~dr~ 282 (394)
T TIGR00883 214 LTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-LGLSAN----------SALLVLMLSLILFFITIPLSGALSDRI 282 (394)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChh----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444323466666666666666666667777776422 222221 112223345667788889999999999
Q ss_pred cChhhHHHHHHHHHHHH-HHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccccccc
Q 012666 360 GAGFIWGISNILMALCF-LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (458)
Q Consensus 360 g~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (458)
|||+.+.....+..+.. ....... . +. +.+.......+.+++.+...+...+++.|.+|+ +.+
T Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~ 346 (394)
T TIGR00883 283 GRRPVLIIFTVLAALLAVPLLMALL----D--------SG--SFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT--EVR 346 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh----c--------CC--chHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc--cce
Confidence 99998765544433322 2222221 0 11 344455666777888888888889999999998 677
Q ss_pred chhhhH-HHHHHHhhhh
Q 012666 439 GLSLGV-LNLAIVIPQV 454 (458)
Q Consensus 439 g~~~g~-~~~~~~~~~~ 454 (458)
+++.|+ .++...+++.
T Consensus 347 ~~~~~~~~~~~~~~g~~ 363 (394)
T TIGR00883 347 YTGASLAYNLAGAIFGG 363 (394)
T ss_pred eeEeeehhHhHHHHHhh
Confidence 777776 3454555543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-22 Score=185.79 Aligned_cols=321 Identities=12% Similarity=0.096 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccc
Q 012666 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (458)
Q Consensus 48 ~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (458)
....+.+|.+.+++|.|..+.+++.+++.++..++.++.|+++| |+||||.+++... ...++.+.. ..++.
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~~~-~~~~~~~~~-~~~~~--- 87 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLAR----RFGEERSVAAGLL-LIAAGILIR-SAPGT--- 87 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhCchHHHHHHHH-HHHHHHHHH-HhccH---
Confidence 44567888999999999999999999999999999999999999 9999998877443 344444433 34443
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccc
Q 012666 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (458)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~ 207 (458)
+.+++.+++.|++.+...+.....+.|.+| ++|+ ++.++.+...++|..+++.+++......
T Consensus 88 ------------~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~i~~~~~~~l~~~~--- 149 (355)
T TIGR00896 88 ------------ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVG--LMTGLYSMALMGGAALAAAATVPLAQHS--- 149 (355)
T ss_pred ------------HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 667788889999988877778888889886 5788 9999999999999999988865532110
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHH
Q 012666 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTI 287 (458)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (458)
..+||+.|...+++.++... ...||.+++++++. +.++ .+.++.+|+ +.+
T Consensus 150 ----------~~~w~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~---------~~~~~~~~~--~~~ 199 (355)
T TIGR00896 150 ----------GGHWQQALAWWALPALLALL---AWIPQVRRRVAANQ------TTTR---------LTPVRIWRS--PLA 199 (355)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHH---HHhhhhccccCCCC------CCCC---------CCCchhhcC--HhH
Confidence 01488888776654433322 22344322111110 0000 011233455 666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhhHH
Q 012666 288 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAGFIWG 366 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~ 366 (458)
+...+..++....+.....+.+.|+.+ .+.+... .........++.++++++.|++.||+ +||+.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~lp~~~~~--~g~~~~~----------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~ 267 (355)
T TIGR00896 200 WQVTVFFGLQSGLYYSLIGWLPAILIS--HGASAAT----------AGSLLALMQLAQAASALLIPALARRVKDQRGIVA 267 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHH----------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH
Confidence 666555555556666666777877742 2332211 12233345777889999999999999 4566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHH
Q 012666 367 ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLN 446 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 446 (458)
.+.++.+++.+.+.+.. . ... .....+.|++.+...+...+.+.+..++ ++.+|...++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~--------------~--~~~--~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 328 (355)
T TIGR00896 268 VLAVLQLVGLCGLLFAP--------------M--HGL--WAWALVLGLGQGGAFPLALTLIGLRSRQ-AAQAAALSAMAQ 328 (355)
T ss_pred HHHHHHHHHHHHHHHhh--------------h--hHH--HHHHHHHHHhhhhHhHHHHHHHHHhccC-HHHHHHHHHHHH
Confidence 77777777766665542 1 111 1235677888888887766666655443 156688888877
Q ss_pred HHHHhhhhhc
Q 012666 447 LAIVIPQVSS 456 (458)
Q Consensus 447 ~~~~~~~~i~ 456 (458)
....++..++
T Consensus 329 ~~~~~~~~~g 338 (355)
T TIGR00896 329 SIGYLLAALG 338 (355)
T ss_pred HHHHHHHHHH
Confidence 7766655443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=187.58 Aligned_cols=334 Identities=16% Similarity=0.171 Sum_probs=218.2
Q ss_pred hHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHH
Q 012666 68 ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFW 147 (458)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (458)
.+.+.+++.+++++++.+.|.++| |+|||..+.+.. +...++.++..++... ....+++++|+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~----~~GRK~~l~~~~-~l~~~~~~~~~~s~~~------------~~~e~li~GR~ 124 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLAD----RFGRKNALLLSN-LLAVLAALLMGLSKSA------------PSFEMLILGRL 124 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhcchHHHHHHH-HHHHHHHHHHHHHHHh------------hhHHHHHHHHH
Confidence 455667889999999999999999 999998777744 4444444444443322 33489999999
Q ss_pred HHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHH
Q 012666 148 ILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFL 227 (458)
Q Consensus 148 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (458)
+.|+..+......+.++.|..|++.|| ........+..+|.+++..++. |.+..+. ..|.+.+..
T Consensus 125 i~Gl~~gl~~~~~pmyl~E~sP~~~RG--~~g~~~~~~~~~g~ll~~~~~l--------~~ilGt~-----~~W~~l~~~ 189 (485)
T KOG0569|consen 125 IVGLACGLSTGLVPMYLTEISPKNLRG--ALGTLLQIGVVIGILLGQVLGL--------PSLLGTE-----DLWPYLLAF 189 (485)
T ss_pred HHHHHhHHHHHHHHHHHhhcChhhhcc--HHHHHHHHHHHHHHHHHHHHcc--------HHhcCCC-----cchHHHHHH
Confidence 999999999999999999999999999 9999999999999999977753 3332211 267777777
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCC-CCCCCc----------c--cccc----ccch----HHHHHHHHHHHHhcc--h
Q 012666 228 DVIFIAITTCISASAAHEVPLGSHDQ-SAPFSE----------E--GHEQ----SSDV----HEAFLWELFGTFRYF--S 284 (458)
Q Consensus 228 ~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~----------~--~~~~----~~~~----~~~~~~~~~~~~~~~--~ 284 (458)
..+..+ ..++.+.++||+|+..-.+ +++++. + +++. ++.+ .++....+++.+++. +
T Consensus 190 ~~i~~~-~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR 268 (485)
T KOG0569|consen 190 PLIPAL-LQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLR 268 (485)
T ss_pred HHHHHH-HHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchh
Confidence 665554 4455667899999854321 111110 0 0000 0000 000112344555552 1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChh
Q 012666 285 GTIWIILIVTALTWL-GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF 363 (458)
Q Consensus 285 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 363 (458)
+.....+...+...+ +......|.+..+.+. +.+. ..+.+.....+++..+.++++.++.||.|||+
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a--G~~~----------~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp 336 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA--GFTP----------EEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP 336 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc--CCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 233334444444444 4455555555554311 1111 12234455567788899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHH-hhchhHhHHhhhcccccccchhh
Q 012666 364 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT-YSVPYALVSIRTESLGLGQGLSL 442 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~ 442 (458)
+++.+..++.++.+++..........+ ....+..+.+..++.+.++.. .|+++-+.+|++|+ +.|..+.
T Consensus 337 Lll~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~--~~R~aa~ 406 (485)
T KOG0569|consen 337 LLLISLSLMAVALLLMSIALFLSNSFG--------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ--SARSAAQ 406 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc--cchHHHH
Confidence 999999999988888776654333310 002233455556666666655 48899999999999 8888888
Q ss_pred hHHHHHHHhhhhhc
Q 012666 443 GVLNLAIVIPQVSS 456 (458)
Q Consensus 443 g~~~~~~~~~~~i~ 456 (458)
++......+..++.
T Consensus 407 s~~~~~~w~~~fiv 420 (485)
T KOG0569|consen 407 SVATAVNWLSNFIV 420 (485)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777766553
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-22 Score=212.69 Aligned_cols=331 Identities=16% Similarity=0.103 Sum_probs=217.6
Q ss_pred hhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHH--HHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHH
Q 012666 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV--CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFV 143 (458)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (458)
...++..+++.+...+++|+.|+++| |+|||+++.. ...+............+++ +.++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laD----r~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~---------------~~l~ 112 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLAD----KYDKAKLAKILKFAEIGIAALAIYGFHLNSV---------------PLLF 112 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhh----hccHHHHHHHHHHHHHHHHHHHHHHHHHhhH---------------HHHH
Confidence 45788888999999999999999999 9999997533 1212222211222222444 8888
Q ss_pred HHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhh
Q 012666 144 FGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKS 223 (458)
Q Consensus 144 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (458)
+.++++|++.+...+...+++.|++|+++|+ +++++.++..++|.++|+.+++++.... +|++
T Consensus 113 ~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~--~a~~~~~~~~~ig~~igp~l~g~l~~~~---------------~~~~ 175 (1140)
T PRK06814 113 AALFLMGIHSALFGPIKYSILPDHLNKDELL--GANALVEAGTFIAILLGTIIGGLATISG---------------NFVI 175 (1140)
T ss_pred HHHHHHHHHHHhhchHHHHhhHhhcCccccc--hhhHHHHHHHHHHHHHHHHHHHHHHhcc---------------ccHH
Confidence 9999999999999999999999999999999 9999999999999999999999854322 7888
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 012666 224 AFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFP 303 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (458)
.|.. .++..+..++..+.+|+++..+..... + ....++....++...++ +.++...+..++.++....
T Consensus 176 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 243 (1140)
T PRK06814 176 LVAL-LMGIAVLGWLASLFIPKTGNAAPDLKI------D---RNIIRSTITLLKYAKAD--KRIWLAILGISWFWLVGAV 243 (1140)
T ss_pred HHHH-HHHHHHHHHHHHhhCCCCCCCCCCCee------c---cchHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHH
Confidence 8844 333334444455566665432211100 0 00111222334444555 7788877777777777677
Q ss_pred HHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHH
Q 012666 304 FLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILY 383 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 383 (458)
+..+.+.|+. +.++.++. ...+.....+++.+++.++.+++.||.++++.+..+.++.+++.+.+.+..
T Consensus 244 ~~~~~p~~~~-~~~g~~~~----------~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (1140)
T PRK06814 244 VLSQLPLLAK-ETLGGDEN----------VATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFAS 312 (1140)
T ss_pred HHHHhHHHHH-HHcCCchH----------HHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcc
Confidence 7777888874 33333221 122334446777889999999999888777766655555555444333320
Q ss_pred HH--hhhcccCCCC-CCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 384 YV--AIHMDYRGHD-LPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 384 ~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.. .....+.... .....+.+.+++..+++|++.+...+...+++.+.+|+ +.+|+++|+.|+...++..+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~G~v~g~~~~~~~~~~~ig~ 387 (1140)
T PRK06814 313 SSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP--AHRARVIAANNVLNAAFMVAGT 387 (1140)
T ss_pred cccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc--ccceeeeHHHHHHHHHHHHHHH
Confidence 00 0000000000 00001345566777788888888888889999999999 8999999999999888776653
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=179.03 Aligned_cols=348 Identities=14% Similarity=0.022 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHH--Hhhhhhhhhhhccccc-eeccccCCcCCCcchhHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII--WLCGPVSGLFVQPLVG-HFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~--~~~~~~~~~~~~~~~G-~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
...+...++.+.+.++...+++|.++++.|.|.+++|++ ...+.+...+.+|+.+ +.+| |+||||.+++...+
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~----~~g~r~~~i~~~~~ 78 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSW----RLGRRRSWVLPMQC 78 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cCCcchhHHHHHHH
Confidence 344556677777888899999999999999999999997 3666888888888884 4788 99999998665533
Q ss_pred HHHHHHHHHh-hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 110 SIAVAVLLIG-LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
....+..... +.... ....+......+..+..+...+...++..|..++++++ ...+....+..+
T Consensus 79 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~--~~~~~~~~g~~l 144 (390)
T TIGR02718 79 LVSACLASLALVGPDV------------AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLA--KGNAVQIAGVMI 144 (390)
T ss_pred HHHHHHHHHHcCCcch------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhh--HHHHHHHHHHHH
Confidence 3332222222 11110 11122333444455667777778888888888888878 778888887788
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccch
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (458)
|..+|+...+...... +|+..|++.+++.++..+..++..||++++ +++ +
T Consensus 145 G~~~g~~~~~~l~~~~---------------gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~-~~~---------~----- 194 (390)
T TIGR02718 145 GFFGGGAGTLVLFGKF---------------GQRPAFLLVACVPLASLVCVLWLKDRAVAS-PEA---------P----- 194 (390)
T ss_pred HHHHHHHHHHHHHHHh---------------CHHHHHHHHHHHHHHHHHHHHHcCCCCcCc-ccc---------c-----
Confidence 8888886655432222 899999999987776666654444332211 000 0
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHH--HH-HHH
Q 012666 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML--NS-VVL 345 (458)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~ 345 (458)
++..++.++.+|+ |.++..+...++...+......+.+.|+.+ . +.++. ..+... .. ...
T Consensus 195 -~~~~~~~~~~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~-G~s~~------------~ig~~~~~~~~~~~ 257 (390)
T TIGR02718 195 -LARRASLFRFFRR--PLAWSLLALALLSAMTAVSGFGLSKLYLVD-A-GWPLE------------WIGRLGMAGGAVTV 257 (390)
T ss_pred -hhhHHHHHHHHcC--cCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-c-CCCHH------------HHHHHHhHHHHHHH
Confidence 0112245566676 667766666666666666666677777743 2 32221 122322 22 345
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhH
Q 012666 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 425 (458)
Q Consensus 346 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (458)
+++.++.|++.||+|+|+.+..+..+.++..+........ ..............+.++..+...+..++
T Consensus 258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 326 (390)
T TIGR02718 258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF-----------WLAPGIAVAWSCSAFGSLITGITSVAIYT 326 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc-----------ccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999887766653333322221100 00001222333344445556666666667
Q ss_pred hHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 426 LVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 426 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
...+..++ ++.+|+.+++.+....++..+++
T Consensus 327 ~~~~~~~~-~~~~g~~~~~~~~~~~lg~~~g~ 357 (390)
T TIGR02718 327 AFMRFAGD-GDQAGTDVTAVQSTRDLGELIAS 357 (390)
T ss_pred HHHHHhCc-ccchHHHHHHHHHHHHHHHHHHH
Confidence 76666553 26788988888888888877653
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=180.84 Aligned_cols=348 Identities=16% Similarity=0.185 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
+........++.+.+++|-+ ....|+.+...+...+..|+.|+++| .+|||..++. +.++.+++.+....+++.
T Consensus 58 ~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSD----lfGRr~~~i~-g~~l~vvG~Iv~atA~~~ 131 (599)
T PF06609_consen 58 FVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSD----LFGRRYFFII-GSLLGVVGSIVCATAQNM 131 (599)
T ss_pred HHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHH----HhcchHHHHH-HHHHHHhHHHHhhcCCcH
Confidence 34444455667777899865 56678888999999999999999999 9999888777 666677777777777776
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccc
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (458)
..++.+..+.|+|.+... .....++|..|.+.|. ...++.....-.....++.++.....
T Consensus 132 ---------------~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~--~~~~~~~~~~i~~~~~~~~ia~~~~~-- 191 (599)
T PF06609_consen 132 ---------------NTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRG--LGLAIASIPFIITTWISPLIAQLFAA-- 191 (599)
T ss_pred ---------------HHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhh--hHhHHHHHHHHhhhcccHHHHHHhcc--
Confidence 788899999999876655 4456689999999988 66665554444433344444332111
Q ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc------------------------
Q 012666 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE------------------------ 260 (458)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~------------------------ 260 (458)
..+|||.|++.+++..+.++..+++...+++++.+.++...++
T Consensus 192 -------------~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl 258 (599)
T PF06609_consen 192 -------------HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGL 258 (599)
T ss_pred -------------CCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 1389999999998877776655554433322211111100000
Q ss_pred --cc--ccccchHHH--------------HHHHH----------HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012666 261 --GH--EQSSDVHEA--------------FLWEL----------FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWM 312 (458)
Q Consensus 261 --~~--~~~~~~~~~--------------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
.. ....+..+- ...|. .+.+|+ +|.+...++..++....++....+.|...
T Consensus 259 ~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~ 337 (599)
T PF06609_consen 259 SWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKD-RRGFAALLVISFISGMNFFSVNILWPQQV 337 (599)
T ss_pred hccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000000 00010 233444 24555555666666656666656666554
Q ss_pred hceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012666 313 GREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA-GFIWGISNILMALCFLAMLILYYVAIHMDY 391 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (458)
..+|+.++.... . .+ +.....+++..++..+.+.+..|+++ |+.++++..++.+++.++....
T Consensus 338 -~~vf~~d~~~~~--~----~~-~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~-------- 401 (599)
T PF06609_consen 338 -VNVFGSDPISIT--E----IG-WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR-------- 401 (599)
T ss_pred -hhhccCCCcccc--e----ee-hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc--------
Confidence 245655543210 0 01 12223455566777888889988876 4455677777766666666553
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 392 RGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
|+. ....+...++.|++.+..........+-..|+ +..|++.|+...+..+|+.|+.
T Consensus 402 -----~~n--~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~--~~ig~a~gL~~s~R~~GGsIg~ 458 (599)
T PF06609_consen 402 -----PDN--KNAAIAFLVLAGFGIGGILVPAIVIAQLIVPD--EDIGTATGLTGSIRSIGGSIGY 458 (599)
T ss_pred -----CCC--cchHHHHHHHHHHhHHHHHHHHHHeeEeeeCc--hHHHHHHHHHHHHHHHhhHHHH
Confidence 332 22334556677777777776667777777888 8899999999999999988764
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-20 Score=178.83 Aligned_cols=376 Identities=15% Similarity=0.117 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCc-CCCcchhHHHHHH
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVCGAI 109 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r-~Grr~~~~~~~~~ 109 (458)
.++......+...++++....+++.|+ +++|++..+.+++.+.+........+++|+++| | +|||+.++.+..+
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaD----r~~G~r~~~~~g~~~ 97 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGD----KVLGTKRVIMLGAIV 97 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchHHHHHHHHHH
Confidence 355555566666778888888899887 789999999888888777666666778999999 9 5999988875444
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
..++..+..++++. ...+.+++.+.+++.+...+...+++.|++|+++++.+.+.++.+...++|
T Consensus 98 -~~ig~~l~~~~~~~--------------~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG 162 (500)
T PRK09584 98 -LAIGYALVAWSGHD--------------AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIG 162 (500)
T ss_pred -HHHHHHHHHHhccc--------------HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHH
Confidence 44455555443221 144556777888999988888889999999865432115788889999999
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHH---HhccccCCCCCCCCCCCCCcccc----
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS---ASAAHEVPLGSHDQSAPFSEEGH---- 262 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~~~---- 262 (458)
..+|+.+++++.... +|++.|.+.++..++..+.. ...++|..++++++..+......
T Consensus 163 ~~~gp~i~g~l~~~~---------------g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (500)
T PRK09584 163 SFFSMLATPWLAAKY---------------GWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVG 227 (500)
T ss_pred HHHHHHHHHHHHHhh---------------CHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHH
Confidence 999999988743322 89999998776544443322 22333322111110000000000
Q ss_pred -----------ccccchHHH------------HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhce-ecc
Q 012666 263 -----------EQSSDVHEA------------FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGRE-IYG 318 (458)
Q Consensus 263 -----------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 318 (458)
.+..+..+. ..++..+.-+..+++.+..+. .++....++......+.++... ...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~ 306 (500)
T PRK09584 228 VVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRN 306 (500)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 000000000 000000000010122222222 1122222222222233332110 000
Q ss_pred CCCcccccccccchhHHHHHHHHHHHHHHHHHHH----HHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 012666 319 GEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM----EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGH 394 (458)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (458)
.+.... ++ ....+.+ ..++.+..++..++. +++.||.+..+.+.+|+++.+++++.+.......+.
T Consensus 307 ~~~~~~-g~--~i~~~~~-~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~------ 376 (500)
T PRK09584 307 VEHSIL-GI--AVEPEQY-QALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFAND------ 376 (500)
T ss_pred cccccc-ce--EECHHHH-HHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 111000 11 1112212 223454455555555 444555555567788999999999887776422111
Q ss_pred CCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 395 DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
....+.++.+...++.+++.....+...+++.+..|+ +.+|+.+|++.+...++..++
T Consensus 377 --~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~--~~rg~~~g~~~l~~a~g~~~~ 434 (500)
T PRK09584 377 --AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ--RLMGFIMGSWFLTTAGAALIA 434 (500)
T ss_pred --CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHH
Confidence 1112355788889999999999999999999999999 999999999987777776654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-19 Score=169.95 Aligned_cols=369 Identities=13% Similarity=0.099 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcC-CCcchhHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFIVCG 107 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~-Grr~~~~~~~ 107 (458)
.+.++..........+.++....++|.|+ +++|+++.+.+.+.+.+.....++.+++|+++| |+ ||||.++++.
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaD----RilGrrr~iliG~ 83 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLAD----KVLGNRMAVMLGA 83 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccCcHHHHHHHH
Confidence 34455555555666778888888999997 568999999999999999999999999999999 98 9999887744
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccc--cchhhhhhHHHHHH
Q 012666 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD--HRRTRVANAYFSLF 185 (458)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~ 185 (458)
+...++.+++...++. . ....+...+..++.+...+...++++|.+|++ +|. .+.++....
T Consensus 84 -il~~lg~lll~~~~~~------------~--~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~--sgf~i~Y~~ 146 (493)
T PRK15462 84 -LLMAIGHVVLGASEIH------------P--SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRD--GGFSLMYAA 146 (493)
T ss_pred -HHHHHHHHHHHHhhcc------------h--hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccc--ceehHHHHH
Confidence 4444444444322110 0 11223333444666666777789999999876 577 789999999
Q ss_pred HHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccc
Q 012666 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265 (458)
Q Consensus 186 ~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 265 (458)
.++|..++|.+.+.+.... +|++.|.+.++..++..+..++..+..++....+.+ +.++++...
T Consensus 147 ~nlG~~iap~l~g~L~~~~---------------Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 210 (493)
T PRK15462 147 GNVGSIIAPIACGYAQEEY---------------SWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKK-VLRATNFLL 210 (493)
T ss_pred HHHHHHHHHHHHHHHHhhh---------------ChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC-CchhhhHHH
Confidence 9999999999987743322 899999987765544443333222111111000000 000000000
Q ss_pred c-----------------ch-HHHHHHH---------------HH-HHHh-cchHHHHHHHHHH---HHHHHHHH----H
Q 012666 266 S-----------------DV-HEAFLWE---------------LF-GTFR-YFSGTIWIILIVT---ALTWLGWF----P 303 (458)
Q Consensus 266 ~-----------------~~-~~~~~~~---------------~~-~~~~-~~~~~~~~~~~~~---~~~~~~~~----~ 303 (458)
. .. .++.... +. +... +-+++++.++... .+.|..+. .
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~s 290 (493)
T PRK15462 211 PNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSS 290 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 0 00 0000000 00 0000 0012333322222 22222211 1
Q ss_pred HHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC--hh-----hHHHHHHHHHHHH
Q 012666 304 FLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA--GF-----IWGISNILMALCF 376 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--r~-----~~~~~~~~~~~~~ 376 (458)
+..|.......++++.+ .... +.-.++.+..++.+++..++-.|..+ |. =+.+|+++.++++
T Consensus 291 l~lfa~~~vd~~~~g~~----------ip~~-~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f 359 (493)
T PRK15462 291 ISLYIDRFVNRDMFGYT----------VPTA-MFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGF 359 (493)
T ss_pred HHHHHHHhccchhccee----------eCHH-HHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 11122222211222211 1122 22334666666667776666566532 21 1567889999998
Q ss_pred HHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHH-Hhhhhh
Q 012666 377 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAI-VIPQVS 455 (458)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~i 455 (458)
+.+.+......+ ....+.++++....+.++|.-...|+..+++++..|+ +.+|..+|++.+.. .+++.+
T Consensus 360 ~~l~~~~~~~~~--------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~--~~~g~~mg~w~l~~~~~~~~~ 429 (493)
T PRK15462 360 CILTLSARWSAM--------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP--GVTGVLTGIYMLLSGAIANYL 429 (493)
T ss_pred HHHHHHHhhcCC--------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHH
Confidence 888765422111 1112567788888999999999999999999999999 99999999998744 677665
Q ss_pred c
Q 012666 456 S 456 (458)
Q Consensus 456 ~ 456 (458)
+
T Consensus 430 ~ 430 (493)
T PRK15462 430 A 430 (493)
T ss_pred H
Confidence 4
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=185.49 Aligned_cols=329 Identities=15% Similarity=0.170 Sum_probs=214.3
Q ss_pred hhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHH
Q 012666 67 WASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGF 146 (458)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (458)
+.+++.+...++..+++++.|+++| ++|||+.+++ +.+...++.++..++++. ..+.++|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d----~~GRk~~l~~-~~~~~~iG~ii~~~a~~~---------------~~l~~GR 149 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGD----RIGRKKTLLL-AVVLFLIGAIIIALAPSW---------------YQLIVGR 149 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHH-HHHHHHHHHHHHHHhhhH---------------HHHHHHH
Confidence 4489999999999999999999999 9999998888 555666777777788777 8999999
Q ss_pred HHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHH
Q 012666 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFF 226 (458)
Q Consensus 147 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (458)
.+.|+|.+......+.+++|..|++.|| ...+..+....+|..++..++...... + .+||..+.
T Consensus 150 ~l~G~g~G~~~~~~piy~sEiap~~~RG--~l~~~~~l~~~~Gi~~~~~~~~~~~~~---~-----------~~Wr~~~~ 213 (513)
T KOG0254|consen 150 ILTGLGVGGASVLAPVYISEIAPAHIRG--TLVSLYQLFITIGILLGYCINYGTSKV---Y-----------AGWRIPLG 213 (513)
T ss_pred HHhccchhhhhhcchhhHhhcCChhhhH--HHHHHHHHHHHHHHHHHHHHhhhhccC---C-----------ccHHHHHH
Confidence 9999999999999999999999999999 999999999999999996665542211 0 27998888
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccc--------cccccchHHHH-----------------HHHHHHHHh
Q 012666 227 LDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG--------HEQSSDVHEAF-----------------LWELFGTFR 281 (458)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----------------~~~~~~~~~ 281 (458)
+..+..++..+. .+++||+|+...++.+.++.+. ++.+...+... ++++.+ +
T Consensus 214 ~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 290 (513)
T KOG0254|consen 214 LALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS--P 290 (513)
T ss_pred HHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC--c
Confidence 888877777777 8899999886544322211000 00000000000 111111 1
Q ss_pred cchHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012666 282 YFSGTIWIILIVTALTWL-GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360 (458)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 360 (458)
...++....+....+.++ +.+....|.+..+. .. +.+.. . .......++...+++.+...+.||+|
T Consensus 291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~-~~---------g~~~~--~-~~~~~~~~~v~~~~t~~~~~lvd~~g 357 (513)
T KOG0254|consen 291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK-SA---------GLKSD--T-FLASIILGVVNFLGTLVATYLVDRFG 357 (513)
T ss_pred chHHHHHHHHHHHHHHHHhCCceEEeehHHHHH-hc---------CCCCc--h-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122333333334444443 33444444444432 21 11100 0 23444456777788888899999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHH-HhhchhHhHHhhhcccccccc
Q 012666 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI-TYSVPYALVSIRTESLGLGQG 439 (458)
Q Consensus 361 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g 439 (458)
||++++.+...+.++.+++........+... ......+..+....++-..++. ..++++.+.+|.+|. +.|+
T Consensus 358 Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~--~~r~ 430 (513)
T KOG0254|consen 358 RRKLLLFGAAGMSICLVILAVVGVFALYYPN-----SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL--RLRS 430 (513)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-----cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH--hHHh
Confidence 9999999999999999988876533322100 0001122223333333223332 346888899999999 7777
Q ss_pred hhhhHHHHHHHhhhh
Q 012666 440 LSLGVLNLAIVIPQV 454 (458)
Q Consensus 440 ~~~g~~~~~~~~~~~ 454 (458)
...++......+...
T Consensus 431 ~~~s~~~~~n~~~~~ 445 (513)
T KOG0254|consen 431 KGASLAVAVNWLWNF 445 (513)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777766665555443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-21 Score=189.53 Aligned_cols=314 Identities=13% Similarity=0.098 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
+........++.+.++++++..+.|++.+.+.++.++..++.|++.| |+||||.+.+ +.++..++.++.++++-.
T Consensus 47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~----r~~r~~~i~~-g~ll~~lg~ll~alphf~ 121 (633)
T TIGR00805 47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGT----KLHRPIVIGI-GCAIMGLGSFLLSLPHFL 121 (633)
T ss_pred HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhc----ccCcceEEEe-cHHHHHHHHHHHhChHHh
Confidence 34456667778888999999999999999999999999999999999 9999998777 555555666655554311
Q ss_pred cccc-------------------CCCCC---------------CC--chhHHHHHHHHHHHHHHhhhcchhhHHHHhhhc
Q 012666 125 GWLL-------------------GDRGD---------------FR--PRAIAVFVFGFWILDVANNMTQGPCRALLADLT 168 (458)
Q Consensus 125 ~~~~-------------------~~~~~---------------~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 168 (458)
...+ ..+.. .. ...+..+++++++.|+|.+..++...+++.|++
T Consensus 122 ~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~ 201 (633)
T TIGR00805 122 SGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFA 201 (633)
T ss_pred cCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccC
Confidence 1000 00000 00 123567778999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhccccccc-ccccc------ccccccccccchhhHHHHHHHHHHHHHHHHHh
Q 012666 169 GKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK-ILPFT------LTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 169 ~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (458)
|+++|+ ++.++......+|..+|+.+++...... -.+.. .+.......++|+..|++.+++.++..++.++
T Consensus 202 ~~~~~~--~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 202 KSKNSP--LYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred CccccH--HHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 9999999999999999999988733211 00000 00001111124777888888777666655444
Q ss_pred ccccCCCCCCCC-CCCCCccc----cccc----cchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012666 242 AAHEVPLGSHDQ-SAPFSEEG----HEQS----SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWM 312 (458)
Q Consensus 242 ~~~e~~~~~~~~-~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
+.++.|+...++ .+.++++. +++. ....++..+..++.+++ |.++...+..++.......+..|.+.|+
T Consensus 280 ~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n--~~f~~~~l~~~~~~~~~~~~~~~lP~yl 357 (633)
T TIGR00805 280 FPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCN--PIYMLVILAQVIDSLAFNGYITFLPKYL 357 (633)
T ss_pred CccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333221111 00000000 0000 01122334556677788 8889888888888888888889999998
Q ss_pred hceeccCCCcccccccccchhHHHHHHHHHH-HHHHHHHHHHHHHHhhcC--hhhHHHHHHHHHHHHHH
Q 012666 313 GREIYGGEPNEGQNYATGVRMGALGLMLNSV-VLGITSVLMEKLCRKWGA--GFIWGISNILMALCFLA 378 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~ 378 (458)
. +.++.++... .+......+ +.+++.+++|+++||++. |+.+.++.++..+++++
T Consensus 358 ~-~~~g~s~~~a----------g~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 358 E-NQYGISSAEA----------NFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred H-HHcCCcHHHH----------HHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 4 4455443332 111222232 346788999999999984 56666666655555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-18 Score=167.25 Aligned_cols=331 Identities=15% Similarity=0.056 Sum_probs=228.6
Q ss_pred hhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHH
Q 012666 67 WASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGF 146 (458)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (458)
..+...++..+..++..|+.|.++| +-|+||.++.....+++++...+.+.+.- .++...+..
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD----~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~-------------~~~~~~~l~ 133 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIAD----YGGRRKRFLLIFTLLGVLATALLWFVSPG-------------QWWLALVLF 133 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc----ccccchHHHHHHHHHHHHHHHHHHHhCcc-------------hHHHHHHHH
Confidence 3467788888999999999999999 99999988887777776666666553221 124445555
Q ss_pred HHHHHHhhhcchhhHHHHhhhcccccc--------------------------hhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 147 WILDVANNMTQGPCRALLADLTGKDHR--------------------------RTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 147 ~~~g~~~~~~~~~~~~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
.+..++.+......+++++|+.+++.+ + +..+.-.....+|.++.-.+.-..
T Consensus 134 iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vS~~G~a~Gy~G~~v~l~i~l~~ 211 (477)
T PF11700_consen 134 IIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRG--RVSGLGWALGYIGGLVALLISLLL 211 (477)
T ss_pred HHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566688888889999999999999888 7 888888888888887776654331
Q ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHH
Q 012666 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTF 280 (458)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (458)
... .........+.|..+.+.++..++..+..++.+||+|+.+..+.. ....+..++++++.+
T Consensus 212 ~~~-------~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~----------~~~~~~g~~~l~~t~ 274 (477)
T PF11700_consen 212 VIS-------PGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG----------SSYLRFGFKRLWRTF 274 (477)
T ss_pred HHc-------CCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc----------hhHHHHHHHHHHHHH
Confidence 100 000011223678999999999999999999999998764222100 011223344444333
Q ss_pred hcc--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012666 281 RYF--SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358 (458)
Q Consensus 281 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 358 (458)
|+. .|....+++..++..-+...+......|..+ .++.+..+ -....+...+.+++++++.+++.||
T Consensus 275 k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~-~lg~s~~~----------l~~~~l~~~i~a~~Ga~~~g~l~~r 343 (477)
T PF11700_consen 275 KEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATE-VLGMSTTQ----------LIVFGLVVQIVAIIGALLFGWLQDR 343 (477)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 2677778888888888888887777777643 33333222 1223334678888999999999999
Q ss_pred hcCh--hhHHHHHHHHHHHHHHHHH--HHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccc
Q 012666 359 WGAG--FIWGISNILMALCFLAMLI--LYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (458)
Q Consensus 359 ~g~r--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (458)
+|.| +++..+.++..+..+.-.+ ... . ....+.+.+++..++.|+..|..++...++.+|+.|+
T Consensus 344 ~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~---~--------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~- 411 (477)
T PF11700_consen 344 FGPKTKRTLLISLILWIIIPLYGLFGFWPS---F--------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP- 411 (477)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHhhhc---c--------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-
Confidence 9999 7776666555332222222 110 0 0111456688888899999999999999999999999
Q ss_pred ccccchhhhHHHHHHHhhhhhcC
Q 012666 435 GLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 435 ~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
++.+..+|++++.......++.
T Consensus 412 -g~e~efFgly~i~gk~ss~lGP 433 (477)
T PF11700_consen 412 -GREAEFFGLYAITGKASSWLGP 433 (477)
T ss_pred -chhhHHHHHHHHHHHHHHHHHH
Confidence 7789999999999888777653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-21 Score=182.32 Aligned_cols=332 Identities=15% Similarity=0.133 Sum_probs=230.9
Q ss_pred HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhH
Q 012666 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAI 139 (458)
Q Consensus 60 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (458)
+++.+..+.+++.+....++.+++.+.|++.| |+|-|+++...+ +...++.++...+.+. ..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~----k~G~r~v~~~~~-~~sa~~t~l~P~aa~~-------------~~ 128 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLAD----KFGARRVFFISG-LISALLTLLTPLAASI-------------GF 128 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHH----HcCchHHHHHHH-HHHHHHHHHHHHHHHh-------------cc
Confidence 46778889999999999999999999999999 999999988844 4455555555554443 11
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Q 012666 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCA 219 (458)
Q Consensus 140 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (458)
+.+++.|+++|++.+...+....+..+|.|+++|+ +..++...+..+|.+++..++|++-... .
T Consensus 129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers--~~~ail~~g~q~g~v~~mp~sg~lc~s~--------------~ 192 (466)
T KOG2532|consen 129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERS--TFIAILTAGSQLGTIITMPVSGLLCESS--------------L 192 (466)
T ss_pred hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHhccC--------------C
Confidence 46789999999999999999999999999999999 9999999999999999998888743321 2
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc--cccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 012666 220 NLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE--EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALT 297 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (458)
||+..|++.+++.++..++.+++..|+|.+.+.-.++|.+ ++++.+++.+++..-.+++.+++ +++|...+..+..
T Consensus 193 GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts--~~vwai~~~~f~~ 270 (466)
T KOG2532|consen 193 GWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTS--PPVWAIWISAFGG 270 (466)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcC--HHHHHHHHHHHHH
Confidence 9999999999999998888888888887663322111111 00000000010011234556677 8999999999999
Q ss_pred HHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCh--------hhH-HHH
Q 012666 298 WLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG--------FIW-GIS 368 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--------~~~-~~~ 368 (458)
..+...+..|.|.|+. ++++.+..+. .+...+-.+...+..++.|.++||+-+| +.+ .++
T Consensus 271 ~~~~~~l~~y~PtY~~-~VL~f~v~~~----------G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~ 339 (466)
T KOG2532|consen 271 NWGFYLLLTYLPTYLK-EVLGFDVRET----------GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA 339 (466)
T ss_pred HHHHHHHHHHhhHHHH-HHhCCChhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence 9999999999999995 5666655543 1222234556677888999999988552 333 456
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchh-HhHHhhhcccccccchhhhHHHH
Q 012666 369 NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY-ALVSIRTESLGLGQGLSLGVLNL 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~ 447 (458)
....+++++.+.+.+ ... . + ..+.+.....+........+ .-..|..| +..+..+|+.|.
T Consensus 340 ~~~~ai~l~~l~~~~-------------~~~-~-~-~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap---q~a~~l~g~~~~ 400 (466)
T KOG2532|consen 340 FGGPAVFLLVLAFTS-------------DEH-R-L-LAVILLTIAIGLSGFNISGFYKNHQDIAP---QHAGFVMGIINF 400 (466)
T ss_pred HHHHHHHHHeeeecC-------------CCc-c-h-HHHHHHHHHHHHcccchhhhHhhhhhccc---hHHHHHHHHHHH
Confidence 777777777777663 111 1 1 11112222222222222222 22223233 788999999999
Q ss_pred HHHhhhhhcC
Q 012666 448 AIVIPQVSSC 457 (458)
Q Consensus 448 ~~~~~~~i~~ 457 (458)
..+++++++.
T Consensus 401 ~~~~~~~~~P 410 (466)
T KOG2532|consen 401 VGALAGFIAP 410 (466)
T ss_pred HHHHHHHHHH
Confidence 9999887754
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-19 Score=165.40 Aligned_cols=347 Identities=13% Similarity=0.162 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (458)
.++...+...+.++...++++.|+++.|+|..|+|.+.++..+...+.++++|.++| |.++++..+....+...+.
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aD----r~~~~~~~l~~~~l~~~~~ 81 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIAD----RFGSAKRILALLSLLSALA 81 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----HhhhHHHHHHHHHHHHHHH
Confidence 345555666667788889999999999999999999999999999999999999999 8765554444344444444
Q ss_pred HHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHH
Q 012666 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (458)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (458)
.......+++ +.++....+..+......+...++..+...+++ .-.|-.....++|-.++.
T Consensus 82 ~~~~~~~~~f---------------~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~----~~YG~iRlwGSiGf~~~~ 142 (400)
T PF03825_consen 82 LLLLAFSSSF---------------WWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG----KDYGRIRLWGSIGFIVAA 142 (400)
T ss_pred HHHHHHhccH---------------HHHHHHHHHHHHHHccHHHHHHHHHHHHccccc----CCCCcchhhhhHHHHHHH
Confidence 4444344343 444555555666666667777777777766332 233445556666666554
Q ss_pred hhh-ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHH
Q 012666 195 ATG-SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 273 (458)
Q Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (458)
... +...... ...+....+++.+....+... ..+.+|+.|+++.++.+ .++...
T Consensus 143 ~~~~~~~~~~~------------~~~~~~~~~~i~~~~~~ll~~-~~l~lp~~~~~~~~~~~------------~~~~~~ 197 (400)
T PF03825_consen 143 LAFGGLLGGYL------------GISGTSLIFYIAAILSLLLAG-FALFLPKTPPKRSAKES------------VKKLLG 197 (400)
T ss_pred HHHHHHHHhhh------------ccccccHHHHHHHHHHHHHHH-HHHhCCCCccccccCCC------------cccccc
Confidence 321 1100000 001223345554444333332 23445666522221100 011222
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012666 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (458)
++..+.+|+ |++..+++..++...+...+..|.+.|+.+.- + ++. ........+..++.++.-...+
T Consensus 198 ~~~~~llk~--~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g-g--------~~~--~~~g~~~~l~~~aEi~~f~~~~ 264 (400)
T PF03825_consen 198 LDALKLLKN--PRFLVFLLAAFLIGISHAAYYTFFSIYLQELG-G--------YSG--STIGILWALGVVAEIPFFFFSG 264 (400)
T ss_pred hHHHHHhcC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c--------chh--hHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888 78888888888888888888888888884221 0 110 1111222345677788888999
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcc
Q 012666 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (458)
Q Consensus 354 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (458)
++.+|+|.++++.++.+..++-+.++.... + |.........+...+.|+.++........++.+.+|+
T Consensus 265 ~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~----~--------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~ 332 (400)
T PF03825_consen 265 RFLKRFGIKWLLLLALVAYAVRWLLYAYFS----D--------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP 332 (400)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHhc----C--------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999988873 0 1110111122334679999999999999999999999
Q ss_pred cccccchhhhHHHHH-HHhhhhhc
Q 012666 434 LGLGQGLSLGVLNLA-IVIPQVSS 456 (458)
Q Consensus 434 ~~~~~g~~~g~~~~~-~~~~~~i~ 456 (458)
+.++++.|+++.. ..+|..++
T Consensus 333 --~~~at~Q~l~~~~~~Glg~~iG 354 (400)
T PF03825_consen 333 --ELRATAQGLYSALSFGLGGAIG 354 (400)
T ss_pred --cchHHHHHHHHHHHhhHHHHHH
Confidence 7788888887653 34555443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=165.50 Aligned_cols=354 Identities=12% Similarity=0.107 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
+..+..+...+...+.++...++.+.++++ .|+|.+++|.+.++..+...+.+|+.|.++| |.|.||.++....+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~D----klg~kK~Ll~~i~~ 82 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISD----KLGLKKHLLWFIAI 82 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHH----HCTTCSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcc----hhhhhHHHHHHHHH
Confidence 455666666777777899999999999965 9999999999999999999999999999999 99988876553332
Q ss_pred HH-H-HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHH
Q 012666 110 SI-A-VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (458)
Q Consensus 110 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (458)
+. . ..+....+.|-.. ...+...+++....++......+...+++.+.... .+ .=.|-..++.+
T Consensus 83 l~~l~~pff~~v~~pll~----------~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--~~--feYG~~R~wGS 148 (412)
T PF01306_consen 83 LLLLFGPFFIYVFGPLLQ----------SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--NG--FEYGRARMWGS 148 (412)
T ss_dssp HHHTCHHHHHHTHHHHHH----------TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--HS--S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--hc--CCcchHHHHhh
Confidence 22 2 2222221221110 00011222222233344444455555665554432 22 33555677788
Q ss_pred HHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccc
Q 012666 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD 267 (458)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (458)
+|.+++..++|.+.. .+.+..|++.....++..++.++..|+.+++.+..+... .+
T Consensus 149 ig~ai~s~~~G~L~~----------------i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~--------~~ 204 (412)
T PF01306_consen 149 IGFAIASLLAGILFN----------------INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG--------AK 204 (412)
T ss_dssp HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS--------S-
T ss_pred HHHHHHHHHhheeee----------------eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc--------cC
Confidence 888888888776321 145567777665555555554444444433222111100 11
Q ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHH
Q 012666 268 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGI 347 (458)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (458)
+++...+++.+.+|+ |++|.+.+........+..+....+.|.. ..+. +. +.+...-........+..++
T Consensus 205 ~~~~~~~~~~~l~k~--~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~-~~f~-~~------~~g~~~~G~l~s~~v~~E~~ 274 (412)
T PF01306_consen 205 KDKVSLKDVLSLFKM--RNFWFFVLFVIGVAAIYDVFDQQFPIYFA-SFFQ-SA------GQGNQMYGYLWSVQVFLEAL 274 (412)
T ss_dssp -----HHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSS-SH------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-cc------ccChhHHhHHHHHHHHHHHH
Confidence 123346778888888 89998877666665555555444444442 1111 00 01111111222234566777
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhH
Q 012666 348 TSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427 (458)
Q Consensus 348 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (458)
.-.+.+++.+|+|.|+.++++..++++-..+..+.+ +++.+.+.-.+.++-.+.......-++
T Consensus 275 ~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-----------------~~~~i~~~klLH~~e~~l~lva~fkYI 337 (412)
T PF01306_consen 275 MMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-----------------NPWVISLIKLLHALEFPLLLVAAFKYI 337 (412)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999886 678899999999999999998999999
Q ss_pred HhhhcccccccchhhhHH-HHHHHhhhhh
Q 012666 428 SIRTESLGLGQGLSLGVL-NLAIVIPQVS 455 (458)
Q Consensus 428 ~~~~~~~~~~~g~~~g~~-~~~~~~~~~i 455 (458)
++.+|+ |..++...+. +++..+++.+
T Consensus 338 ~~~fd~--rlsAt~y~v~~~~~~~~~~~i 364 (412)
T PF01306_consen 338 TAHFDK--RLSATLYLVGFQFAKQIGIII 364 (412)
T ss_dssp HHHS-G--GGHHHHHHHHHTTTHHHHHHH
T ss_pred HHhCCH--hHHHHHHHHHHHHHHHHHHHH
Confidence 999998 7666666653 4555555544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-20 Score=160.72 Aligned_cols=332 Identities=15% Similarity=0.139 Sum_probs=199.3
Q ss_pred CCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHH
Q 012666 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVF 142 (458)
Q Consensus 63 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (458)
.+..-.|.+.+.+.+.+.+.+|.+|.++| |+|||.++++ +.+..++.+.+.+.+.++ ..+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD----~yGRkpvll~-c~~~va~s~ll~~~S~~F---------------~af 124 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSD----RYGRKPVLLA-CLIGVALSYLLWALSRNF---------------AAF 124 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhh----hhCchHHHHH-HHHHHHHHHHHHHHHHHH---------------HHH
Confidence 34556789999999999999999999999 9999887776 667777788888887776 566
Q ss_pred HHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchh
Q 012666 143 VFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLK 222 (458)
Q Consensus 143 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (458)
++.|++.|+.-+ ......++++|+.++|.|+ ++++..+..+++|.++||.+|+++.. ++ ... +.+.
T Consensus 125 v~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~--l~ms~v~~a~~lGfilGPmIGgyla~---f~---~~~-----g~~p 190 (451)
T KOG2615|consen 125 VLARFLGGIFKG-NLSVIRAIISDVVSEKYRP--LGMSLVGTAFGLGFILGPMIGGYLAQ---FS---SIS-----GSYP 190 (451)
T ss_pred HHHHHhhhhccC-chHHHHHHHHhhcChhhcc--ceeeeeehhhhcchhhcchhhhHHHh---hH---hhh-----ccCc
Confidence 677888887765 4577899999999999999 99999999999999999999998543 11 000 0111
Q ss_pred hHH--HHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccch-HHHHHHHHHHHHhcchH----HHHHHHHHHH
Q 012666 223 SAF--FLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV-HEAFLWELFGTFRYFSG----TIWIILIVTA 295 (458)
Q Consensus 223 ~~~--~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 295 (458)
..+ ++..+..........+++||+-+.+++++++.+..+..+.+.+ .+....+-...+||.|. ..+..+....
T Consensus 191 ~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~ 270 (451)
T KOG2615|consen 191 FALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHY 270 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence 111 1112222221344556788875443333111110110000000 00011222334455321 1222222333
Q ss_pred HHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhc--ChhhHHHHHHHHH
Q 012666 296 LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG--AGFIWGISNILMA 373 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~ 373 (458)
+.+...+..+.+...++.+.-++.++... ++ .+...++...+......+..||.. .+..+..+..++.
T Consensus 271 ~ly~~l~s~~~~t~~~l~~~rfg~ss~~~-G~---------vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 271 FLYLELFSGLENTVLFLTHGRFGYSSMQQ-GK---------VLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHhhHHHhhcCccCCChhhh-ee---------eeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 33333444444555555455566655543 11 111223334444444444444443 2333444444444
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhh
Q 012666 374 LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQ 453 (458)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 453 (458)
-.++++.... ....+.+...+..+.-+...+....++....|+ +++|+.+|+.....+++.
T Consensus 341 P~~llls~~~-----------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~--~qrG~~~Gi~~Sl~alaR 401 (451)
T KOG2615|consen 341 PAFLLLSLAR-----------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQ--SQRGTLNGIFRSLGALAR 401 (451)
T ss_pred HHHHHHhccc-----------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCc--ccchHHHHHHHHHHHHHH
Confidence 4444443332 345566777777777777778889999999999 889999998888777777
Q ss_pred hhcC
Q 012666 454 VSSC 457 (458)
Q Consensus 454 ~i~~ 457 (458)
+++.
T Consensus 402 aiGP 405 (451)
T KOG2615|consen 402 AIGP 405 (451)
T ss_pred Hhhh
Confidence 6653
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=175.59 Aligned_cols=270 Identities=12% Similarity=0.027 Sum_probs=195.6
Q ss_pred HHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCch
Q 012666 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPR 137 (458)
Q Consensus 58 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (458)
.++.++...+.+.+.+++.++++++.++.|.+.| |++-.+.+...++...+.+++.. ...++
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~----r~~ls~~l~~~~~~w~~~~~~~~-~~~s~------------- 134 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGD----RFPLSKGLSVSGILWGLFGFLTA-AVHSF------------- 134 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHH----hCChHHHHHHHHHHHHHHHHHHH-HHhhh-------------
Confidence 3678888899999999999999999999999999 99866666554444433333333 24454
Q ss_pred hHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Q 012666 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217 (458)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 217 (458)
+.+++.|++.|+..+..+|....++..++.+++|+ ..++++....++|+++|++++..+.... ....
T Consensus 135 --~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g--~r~~~~~a~~~~g~i~ggliA~g~~~~~---------~~~~ 201 (495)
T KOG2533|consen 135 --PGLIALRFLLGLFESGGWPGVVAILGNWYGKSERG--LRMGIWYASASLGNIFGGLIAYGVFKLN---------GSGG 201 (495)
T ss_pred --HHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhh--hhHHHHHHhcchhhHHHHHHHHHhhhhc---------CCCC
Confidence 88999999999999999999999999999999999 9999999999999999999866521100 0001
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC------CccccccccchHHHHHHHHHHHHhcchHHHHHHH
Q 012666 218 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF------SEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIIL 291 (458)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (458)
..+|||.|.+.+++.++..++.++++|+.|.+..-..+++ +.+++.+....++....++++.+++ +..|.+.
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d--p~vw~~~ 279 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKD--PGVWPFS 279 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhc--hhHHHHH
Confidence 1399999999999999999999999999887432111111 0111111111111445677888888 8999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hcChhhHHH
Q 012666 292 IVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK----WGAGFIWGI 367 (458)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~ 367 (458)
+..++.......+..|.+.++.+ ..+.+...+. ...+...++++++.++.|.++|| ..+|.....
T Consensus 280 l~~~~~~lv~~~~~~~lpl~l~~-~~~~s~~~a~----------~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~ 348 (495)
T KOG2533|consen 280 LCYFFLKLVNYGFSYWLPLYLKS-NGGYSELQAN----------LLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIV 348 (495)
T ss_pred HHHHHHhhccccHHHHHHHHHHc-CCCcChHHhc----------cccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999865 2222222221 11233567788999999999999 445554444
Q ss_pred HHHH
Q 012666 368 SNIL 371 (458)
Q Consensus 368 ~~~~ 371 (458)
...+
T Consensus 349 ~~~~ 352 (495)
T KOG2533|consen 349 FLCL 352 (495)
T ss_pred HHHH
Confidence 4433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-18 Score=157.87 Aligned_cols=329 Identities=13% Similarity=0.102 Sum_probs=207.8
Q ss_pred HHHHHHHHhCCCchh-hHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCC
Q 012666 53 LLTPYVQELGIPHAW-ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (458)
Q Consensus 53 ~l~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (458)
..|.+.+++|+++.+ .|.+.+++..++++..++.|+++| |+|.|+.+.+ +.+...+..++.+++.++
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaD----rlG~K~vL~l-~~l~Wsl~t~L~~fa~Sl------- 115 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTD----YLRYKPVLVL-QALSFVCVWLLLLLGTSV------- 115 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHH-HHHHHHHHHHHHHHHHHH-------
Confidence 445556899999999 999999999999999999999999 9999988777 555566666666666665
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccccc
Q 012666 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT 211 (458)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~ 211 (458)
..+.+.++++|++.+... +...++..++|+++|+ +++++...+..+|.++++++++.+. ..
T Consensus 116 --------~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~--ratsi~~sg~~vG~~Ia~~L~qll~-s~------- 176 (511)
T TIGR00806 116 --------WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQ--RAAAYSRAAVLLGVFLSSVLGQLLV-TL------- 176 (511)
T ss_pred --------HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-hc-------
Confidence 889999999999999999 9999999999999999 9999999999999999999987621 11
Q ss_pred ccccccccchhhH---HHHHHHHHHHHHHHHHhccccCCCC-----CCC-C--C--CCCC---ccccccc--cc-h----
Q 012666 212 SACNVDCANLKSA---FFLDVIFIAITTCISASAAHEVPLG-----SHD-Q--S--APFS---EEGHEQS--SD-V---- 268 (458)
Q Consensus 212 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~-~--~--~~~~---~~~~~~~--~~-~---- 268 (458)
+|++- .++......++.+ ..+++|..++. ++. + . +.++ ++..+.. .+ .
T Consensus 177 --------gWr~y~~Ln~Isl~s~~~a~~-~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (511)
T TIGR00806 177 --------GWISYSTLNIISLVFMTFSVF-LALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSF 247 (511)
T ss_pred --------CchhHHHHHHHHHHHHHHHHH-HHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHH
Confidence 55543 3344434444433 44555633321 000 0 0 0000 0000000 00 0
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHH
Q 012666 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (458)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (458)
-+..++++++..+| +.+..-.+-..+...++.-...|...... ++ ++... .|+.+.+ .+..+.+.+.
T Consensus 248 ~~~l~~~~~~~y~n--~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~-~v---~~~~~-~yNG~ve------A~~tllga~~ 314 (511)
T TIGR00806 248 LVRMLSELVTIYRN--PQLLLWSLWWVFNSAGYYLITYYVHTLWG-TL---DESLN-KYNGAVD------AASTLLGAIT 314 (511)
T ss_pred HHHHHHHHHHHhcC--cchhhhhHHHHHHhhHHHHHHHHHHHHHH-Hc---CCCcc-ccCCHHH------HHHHHHHHHH
Confidence 11233444555555 33333222223333333333333322221 11 12111 2433322 2234456677
Q ss_pred HHHHHHHHHhhcChhhH--HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHh
Q 012666 349 SVLMEKLCRKWGAGFIW--GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (458)
Q Consensus 349 ~~~~g~l~dr~g~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (458)
++..|++-.++.+-..+ .+..++.+..++++...+ +.|..++..++++..+....++...-
T Consensus 315 a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~-----------------~Iw~~Y~~yvlf~~~y~flitia~~~ 377 (511)
T TIGR00806 315 SFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSH-----------------DIWVLYVTYVLFRGIYQFLVPIATFQ 377 (511)
T ss_pred HHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhccc-----------------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888886555332223 333344444444444443 68999999999999999999888888
Q ss_pred HHhhhcccccccchhhhHHHHHHHhhh
Q 012666 427 VSIRTESLGLGQGLSLGVLNLAIVIPQ 453 (458)
Q Consensus 427 ~~~~~~~~~~~~g~~~g~~~~~~~~~~ 453 (458)
+++.... +.-|..+|+.++..-+=|
T Consensus 378 iA~~L~~--~~~aLvFGiNtfvAl~LQ 402 (511)
T TIGR00806 378 IASSLSK--ELCALVFGINTFVATALK 402 (511)
T ss_pred HHHHhcc--cceEEEEecHHHHHHHHH
Confidence 8888777 778999998777665544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-20 Score=163.27 Aligned_cols=314 Identities=13% Similarity=0.167 Sum_probs=217.4
Q ss_pred HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhH
Q 012666 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAI 139 (458)
Q Consensus 60 ~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (458)
+.+-+++++|++.+...+.+.+.+|+.|.+.| |+|+|-++++ +...+..+.+++++..++
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~----~iGy~ipm~~-Gl~vmf~sTilFafg~sy--------------- 159 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLID----RIGYKIPMVA-GLFVMFLSTILFAFGNSY--------------- 159 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHH----HhccccHHHH-HHHHHHHHHHHHHHcchh---------------
Confidence 35667789999999999999999999999999 9999888887 666677777888888887
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHHhhhccccc-chhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccc
Q 012666 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDH-RRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDC 218 (458)
Q Consensus 140 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (458)
+++++.|.++|+|.++......++++|.+|++. |+ +++|+.-.+.++|.++||.+||++....
T Consensus 160 ~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~--~vmGialgfislG~lvgPpfGGilYe~~-------------- 223 (464)
T KOG3764|consen 160 PMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG--SVMGIALGFISLGVLVGPPFGGILYEFA-------------- 223 (464)
T ss_pred HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh--HHHHHHHHHHhccceecCCcccchHhhc--------------
Confidence 899999999999999999999999999999876 57 8999999999999999999999865443
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 012666 219 ANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTW 298 (458)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (458)
|.+..|.+.++++++-..+.++.++.++.++++.. +. ..+++.+++ +..+..........
T Consensus 224 -Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~--------------~~---~~~~~Ll~d--P~I~~~agai~~~n 283 (464)
T KOG3764|consen 224 -GKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTE--------------QG---TPMWSLLMD--PYILLIAGAITFSN 283 (464)
T ss_pred -CCcCcHHHHHHHHHHHHHHHHheeCccccCccccc--------------cC---ccHHHHHhC--chHhhhhcchhhcc
Confidence 88899999999998888888777765544332110 00 123455555 55554433333333
Q ss_pred HHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChh--hHHHHHHHHHHHH
Q 012666 299 LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF--IWGISNILMALCF 376 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~~~~~~~ 376 (458)
.+....-.-++.++.+... ++ ++..| +..+..++...++..+.|.++||++..+ ....+.+...++.
T Consensus 284 ~~lafLePtlslwm~e~m~--~p----~w~~G-----~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~ 352 (464)
T KOG3764|consen 284 SSLAFLEPTLSLWMLETMF--TP----GWEVG-----LAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSS 352 (464)
T ss_pred chHHHhCcccHHHHHHhcc--CC----Cccee-----eeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence 2222222233444433321 11 22222 1223345667788899999999999433 2244555555555
Q ss_pred HHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccc-c---ccchhhhHHHHHHHhh
Q 012666 377 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG-L---GQGLSLGVLNLAIVIP 452 (458)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~---~~g~~~g~~~~~~~~~ 452 (458)
....+.+ ++..+++.....+++.+...+.........++.++ + .-|...++...+.+++
T Consensus 353 ~~iP~~~-----------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla 415 (464)
T KOG3764|consen 353 GPIPFAT-----------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLA 415 (464)
T ss_pred chhHhhh-----------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHh
Confidence 5555553 45556665666666666666555555555555532 2 4588888888888888
Q ss_pred hhhcC
Q 012666 453 QVSSC 457 (458)
Q Consensus 453 ~~i~~ 457 (458)
..++.
T Consensus 416 ~a~GP 420 (464)
T KOG3764|consen 416 YAIGP 420 (464)
T ss_pred hhccc
Confidence 77664
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=152.83 Aligned_cols=354 Identities=14% Similarity=0.087 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccc
Q 012666 45 FGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (458)
Q Consensus 45 ~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~ 123 (458)
..+......+.+-+ ...|.+..+..++......+..+++..+|.++| ++||||.+........+.+ .+-..+++
T Consensus 91 ~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d----~~grr~~f~~T~l~t~v~~-~is~~spn 165 (528)
T KOG0253|consen 91 AMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSAD----TIGRRKGFNLTFLVTGVFG-VISGASPN 165 (528)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehh----hhhcchhhhhhHHHHHHHH-HhhcCCCC
Confidence 44555555555554 557888889999999999999999999999999 9999999887554444333 44446777
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccc
Q 012666 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (458)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (458)
+ ..+.+.+.+.++|.+. .|...++-.|..|..+|. ..+-.. ..+.+|.+....+.-.....
T Consensus 166 f---------------~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~--~~~V~~-~~waig~v~ea~law~vm~~ 226 (528)
T KOG0253|consen 166 F---------------ASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRW--LLTVMS-FFWAIGQVFEALLAWGVMSN 226 (528)
T ss_pred e---------------ehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCC--cchhHH-HHHHHHHHHHHHHHHHHHHh
Confidence 6 7788899999999988 788888999999999998 555555 78888888887775432111
Q ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC-------------------------
Q 012666 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS------------------------- 258 (458)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~------------------------- 258 (458)
.||||......... .......+.+||+++....+.++++
T Consensus 227 ---------------~gwr~~l~~~~~pl-~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~ 290 (528)
T KOG0253|consen 227 ---------------FGWRYLLFTSSTPL-MFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSA 290 (528)
T ss_pred ---------------hhHHHHHHHHHhHH-HHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeeh
Confidence 18999777777443 3344455678998875433222211
Q ss_pred ---ccccccc-cchHHHHHHHHHHHHhcc-hHHHHHHHH----HHHHHHHHHHHHHHhhhhhhh-ceeccCC----Cccc
Q 012666 259 ---EEGHEQS-SDVHEAFLWELFGTFRYF-SGTIWIILI----VTALTWLGWFPFLLFDTDWMG-REIYGGE----PNEG 324 (458)
Q Consensus 259 ---~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~ 324 (458)
+|+++.. .+.+.+.-++.....++. .+.++...+ ..+...+.++......+...+ .+..+.. +.+.
T Consensus 291 ~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~ 370 (528)
T KOG0253|consen 291 IDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTEL 370 (528)
T ss_pred hhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHH
Confidence 0000000 000000001111111111 122222222 222222233333222222221 1111100 0000
Q ss_pred ---ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchH
Q 012666 325 ---QNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGI 401 (458)
Q Consensus 325 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (458)
..........-.-+++.++...++.++.+++.||+|||+.+...+++++++.+++.... .. +
T Consensus 371 e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-------------~r--n 435 (528)
T KOG0253|consen 371 ETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-------------TR--N 435 (528)
T ss_pred HhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-------------Cc--c
Confidence 00111111222335556788899999999999999999999999999888887776653 11 2
Q ss_pred HHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 402 VIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.. .+..+..-+.....+.+.|.+..|+.|. ..|++..|.-+.+.-+|.++..
T Consensus 436 ~~--tvllf~arafisg~fqvaYvYtPEVyPT--avRatgvGtcSsmaRIggI~~p 487 (528)
T KOG0253|consen 436 AY--TVLLFTARAFISGAFQVAYVYTPEVYPT--AVRATGVGTCSSMARIGGIFSP 487 (528)
T ss_pred hh--HHHHHHHHHHHhchheEEEEecCcccch--hhhhcchhhhhhHHhhhhhhhh
Confidence 22 2222333344555677889999999999 7788888888888888877653
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-18 Score=150.62 Aligned_cols=339 Identities=13% Similarity=0.104 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
-........++...+........+|.+.+.++++..+++++...+..++.+.+++.|++.+ |+|+|+.+++ +..+
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~k----k~gyk~gi~l-gL~l 87 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIK----KLGYKAGIVL-GLLL 87 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHH----HhhhHHHHHH-HHHH
Confidence 3444455555566666777778889999999999999999999999999999999999999 9999999888 5555
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
.++++.++.-+.+ ...+..++++.++.+.|.+...++.+.++..+.+++... +-+.+.+.++++|.
T Consensus 88 ~avg~~lF~pAa~------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~--~rlnl~q~fn~lGa 153 (422)
T COG0738 88 YAVGAALFWPAAS------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAA--FRLNLAQAFNGLGA 153 (422)
T ss_pred HHHHHHHHhhhhh------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHH--HHHHHHHHhhhhHH
Confidence 5565555532222 233477888889999999999999999999999987766 67888999999999
Q ss_pred HHHHhhhcccccc-c---cccccccccccccccchhhHHHHHHHHHHHHHHHHHh-ccccCCCCCCCCCCCCCccccccc
Q 012666 191 ILGYATGSFSGWF-K---ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS-AAHEVPLGSHDQSAPFSEEGHEQS 265 (458)
Q Consensus 191 ~ig~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~ 265 (458)
+++|.+++.+... . ..+-...+........++..|...+.+..++.+.... ..||.+..++++.+
T Consensus 154 ~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~---------- 223 (422)
T COG0738 154 ILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA---------- 223 (422)
T ss_pred HHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc----------
Confidence 9999998873221 0 0000011111112235777888777665555444322 12332221111100
Q ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHH
Q 012666 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 345 (458)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (458)
.++. ...+.+++ |.++...+..+++-..-.....+.+.|+.+. .+.+. ..+......+-++.
T Consensus 224 --~~~~---~~~~l~~~--~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-~g~~~----------~~aa~~~s~~~~~~ 285 (422)
T COG0738 224 --SGSA---GLSSLFQN--KHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-LGLNE----------QQAAYYLSFFWVGF 285 (422)
T ss_pred --cccc---hHHHHHhC--hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CCccH----------HHHHHHHHHHHHHH
Confidence 0000 23455667 8888888888888878888888888888543 22111 12233344456667
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhH
Q 012666 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 425 (458)
Q Consensus 346 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (458)
+++++++.++.+|+...+.+.+..++..+.++...+.+ + ...+....+.|+..+..+|..++
T Consensus 286 ~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~-----------------g-~v~~~~l~~ig~F~simfPTIfs 347 (422)
T COG0738 286 MVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG-----------------G-VVALYALFLIGLFNSIMFPTIFS 347 (422)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc-----------------C-hHHHHHHHHHHHHhHHHHHHHHH
Confidence 88999999999999999988876666555555555553 2 44556677778889999999999
Q ss_pred hHHhhhccc
Q 012666 426 LVSIRTESL 434 (458)
Q Consensus 426 ~~~~~~~~~ 434 (458)
+..+..|++
T Consensus 348 lal~~l~~~ 356 (422)
T COG0738 348 LALKNLGEH 356 (422)
T ss_pred HHHhccCcc
Confidence 999999964
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-18 Score=151.86 Aligned_cols=331 Identities=14% Similarity=0.095 Sum_probs=231.9
Q ss_pred hhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHH
Q 012666 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFG 145 (458)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (458)
+..+...++..+..++..|+.|.++| +.|+||.++.......+.+...+.+.++- ..++..++.
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD----~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~------------s~~~~~l~~ 121 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIAD----YPGPRKKFFGFFTAIGIISTFLLWFIPPG------------SYLLLLLLF 121 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhc----cCCCcchHHHHHHHHHHHHHHHHHHhCCC------------chHHHHHHH
Confidence 35677788888999999999999999 99999999887777777777777666551 223556666
Q ss_pred HHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc---ccccccccccccccccccccchh
Q 012666 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF---SGWFKILPFTLTSACNVDCANLK 222 (458)
Q Consensus 146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 222 (458)
..+..++........++++.+..++++-+ +..+.......+|+.+.-.+.-. .......+...-.....+...-|
T Consensus 122 ~il~~i~~~~s~Vfyds~L~~~~~k~~~~--riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~r 199 (438)
T COG2270 122 LILASIGFEFSNVFYDSMLPRLTTKDNMG--RISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVR 199 (438)
T ss_pred HHHHHHhcchhheehhhHhhhhcCccccC--cccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccch
Confidence 66777899999999999999999998877 77766666666666554443211 11011112222222233445789
Q ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHH
Q 012666 223 SAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYF--SGTIWIILIVTALTWLG 300 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 300 (458)
..+.+.++..++..+..++..||.++...++ .+.....++++++.+|+. .+.+..+++..++..-+
T Consensus 200 i~~~l~A~W~li~~iPm~~~v~~~~~~~~~~------------~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DG 267 (438)
T COG2270 200 ITGLLAALWWLLFALPMILNVHDAEKISSPP------------PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDG 267 (438)
T ss_pred hHHHHHHHHHHHHHhHHHhcccccccccccc------------hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 9999999999999999988888876533111 011233344444433332 15777788888888877
Q ss_pred HHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHH
Q 012666 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAML 380 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 380 (458)
..+...+...|-. ..++.+..+ .. +..+...+.+++++++.|++.||+|.|+++..+.++..+..+...
T Consensus 268 v~til~~~~~fg~-~~~gls~~~---------ll-l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 268 VNTILAMGGVFGA-ADLGLSSTE---------LL-LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred HHHHHHHHHHHHH-HHcCccHHH---------HH-HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence 7777766666542 223322211 11 222335777889999999999999999999988888777666655
Q ss_pred HHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 381 ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+.. .....+++..+.|...|...+..-++..+.+|+ ++.|+.+|++++....+..++
T Consensus 337 ~~~-----------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~--~k~~~fFglyaltgra~S~~g 393 (438)
T COG2270 337 FLE-----------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPK--GKEGRFFGLYALTGRAASFLG 393 (438)
T ss_pred Hcc-----------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC--ccccceeehhhhhhhHHHHHH
Confidence 553 234566777888999999999999999999999 889999999999887776654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-18 Score=162.22 Aligned_cols=335 Identities=14% Similarity=0.073 Sum_probs=242.3
Q ss_pred HHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCC
Q 012666 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (458)
Q Consensus 52 ~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (458)
.+.+.+.++++.+..+++|+.++......+..|+.+.+.| |+|.|++.++ +.++...++++..+++++
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~----rfg~R~v~i~-G~~v~~~g~~lssF~~~i------- 134 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCN----RFGCRTVMIA-GGLVAALGLLLSSFATSL------- 134 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHh----hcCchHHHHH-HHHHHHHHHHHHHHHhhH-------
Confidence 4566777999999999999999999999999999999999 9999998887 556677788877788776
Q ss_pred CCCCchhHHHH-HHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccc
Q 012666 132 GDFRPRAIAVF-VFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTL 210 (458)
Q Consensus 132 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~ 210 (458)
+.+ +...++.|+|.+..+.+....+..+++ ++|+ .++|+...+.++|..+-+.+...+....
T Consensus 135 --------~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~--lA~Gia~~GsG~G~~~~~~l~~~l~~~~------ 197 (509)
T KOG2504|consen 135 --------WQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRA--LATGIAVSGTGVGTVVFPPLLKYLLSKY------ 197 (509)
T ss_pred --------HHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHH--HHHhhhhccCCcceeeHHHHHHHHHHHh------
Confidence 444 455556789999999999999998876 7788 8999999999999888777654432222
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCC--------------------CCCCC-----Cc-----c
Q 012666 211 TSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD--------------------QSAPF-----SE-----E 260 (458)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--------------------~~~~~-----~~-----~ 260 (458)
|||+.+++.+.+.+-+.+......|..+..++. ....+ .+ +
T Consensus 198 ---------G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (509)
T KOG2504|consen 198 ---------GWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNL 268 (509)
T ss_pred ---------CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccch
Confidence 999999999988877777766666622221100 00000 00 0
Q ss_pred cc---ccccchHHHHHHHH----HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchh
Q 012666 261 GH---EQSSDVHEAFLWEL----FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRM 333 (458)
Q Consensus 261 ~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (458)
.. .+++.+.....+.. .+.+++ +.++.+.+...+..+++.....+++.|... .+.+.. .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~d~~ll~~--~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~--~g~~~~----------~ 334 (509)
T KOG2504|consen 269 ATLKRGPDKWRNSPLQAFLSMLDLSLLKD--PKFLLLALSNLFAYLGFNVPFVYLPSYAKS--LGLSSN----------D 334 (509)
T ss_pred hhhhhCCccccccchhhhhhhhhHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCChh----------h
Confidence 00 00000000111111 456777 888888888888888988888888888742 222221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChh--hHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHH
Q 012666 334 GALGLMLNSVVLGITSVLMEKLCRKWGAGF--IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTI 411 (458)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (458)
....+...++..+++.++.|+++|+...++ +..++.++.+++.+...+.+ +.+.++...++
T Consensus 335 aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~-----------------~~~~l~~~~~~ 397 (509)
T KOG2504|consen 335 AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT-----------------TYVGLIVFSIL 397 (509)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHH
Confidence 233444568888999999999999988443 34556666666665555553 56788899999
Q ss_pred HhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 412 LGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+|+..+.........+.|.++. ++...+.|+..++..++.+++.
T Consensus 398 fG~~~g~~~~l~~~i~~~~~g~--~~l~~a~Gl~l~~~gi~~l~gp 441 (509)
T KOG2504|consen 398 FGFCVGSFSSLTPVILVDLVGL--EKLSNAYGLLLLFQGIGALVGP 441 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcCh--hhcchHHHHHHHHhHHHHHcCc
Confidence 9999999888888899999999 8888999999999999988764
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-20 Score=169.45 Aligned_cols=361 Identities=12% Similarity=0.043 Sum_probs=212.4
Q ss_pred CCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHH
Q 012666 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVF 142 (458)
Q Consensus 63 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (458)
+++...+.+..+..++..++++++|++.| |+|||+++.... ++++++.++.+++... ++....+.++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD----~~GRK~vYG~~l-iImIi~t~~~~~s~~~--------~~~~~~m~~L 147 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGD----KFGRKKVYGKEL-IIMIICSALSGLSVGT--------TSPLGVMMTL 147 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHh----hhcchhhhhHHH-HHHHHHHHHhccCCCC--------CCCcchhhHH
Confidence 56677888899999999999999999999 999999998844 4455555566565554 4455677888
Q ss_pred HHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchh
Q 012666 143 VFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLK 222 (458)
Q Consensus 143 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (458)
.+.|+++|+|.|+-+|...+..+|....++|| ...+..-...+.|.+.|..++-++..-..-|.-......+...-||
T Consensus 148 ~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG--a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWR 225 (538)
T KOG0252|consen 148 CFFRFLLGIGIGGDYPLSATIMSESANKKTRG--AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWR 225 (538)
T ss_pred HHHHHHhhccccCCCcchHHHhhhhhhhcccc--ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999 6666666667777766666654421100001000000111113588
Q ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCC-----C-----------CccccccccchHHHHHHHHHHHHhcc-hH
Q 012666 223 SAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP-----F-----------SEEGHEQSSDVHEAFLWELFGTFRYF-SG 285 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 285 (458)
..+.+.++..+ ..++.-+.+||+++...-..++ + +++..+...+..++..+.+.+.+... -+
T Consensus 226 l~~glg~vpa~-~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~ 304 (538)
T KOG0252|consen 226 IIFGLGAVPAL-LVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGK 304 (538)
T ss_pred HHHHHHHHHHH-HHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHH
Confidence 88877665544 3445556788887644110000 0 00000111111112222222222220 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhH
Q 012666 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (458)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 365 (458)
.+...+...|+.-.+++....+....+.. .+..+... .++.-...+....++.....+++..+...++|++||++..
T Consensus 305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~--ig~~~~~~-~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq 381 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSA--IGVIPSAN-TYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHhhhhhhhccccHHHHHHHh--hccCCCcc-hHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH
Confidence 33334444444444555555555544421 12222222 1111111222223333333445777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhh-HHHHHhhchhHhHHhhhcccccccchhhhH
Q 012666 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG-PLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (458)
+.+++++.+..+.+..... +..+....+++..+..+ +--.-....+.+.+|.+|. |-||+..|+
T Consensus 382 ~~GF~~~~i~~~~~~~~y~-------------~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa--rvR~t~hGI 446 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYN-------------QLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA--RVRSTCHGI 446 (538)
T ss_pred HhhHHHHHHHHHHHcCCcc-------------cccccCceeehHHHHHHHHhcCCCceeEEeehhhchH--HHhhhhhhH
Confidence 9999999988887776531 00011122222222222 1112234567788999999 999999999
Q ss_pred HHHHHHhhhhhcC
Q 012666 445 LNLAIVIPQVSSC 457 (458)
Q Consensus 445 ~~~~~~~~~~i~~ 457 (458)
.......|.+++.
T Consensus 447 sAA~GK~GAivg~ 459 (538)
T KOG0252|consen 447 SAASGKAGAIVGA 459 (538)
T ss_pred HHHhccchHHHHH
Confidence 9999888888764
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=153.58 Aligned_cols=349 Identities=13% Similarity=0.152 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHH
Q 012666 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (458)
.|...++..+++......-..+-.+.+++.++..++.++++..+.+.+.++|++.|| |+|-|..-++.++..++.-+
T Consensus 49 mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr---~fgir~gtii~~~fv~~Gql 125 (459)
T KOG4686|consen 49 MCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDR---RFGIRLGTIILCIFVFLGQL 125 (459)
T ss_pred HHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehh---hhhhhHHHHHHHHHHHHHHH
Confidence 344444444555444444444556788888899999999999999999999999997 77877766665555444433
Q ss_pred HHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHh
Q 012666 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (458)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (458)
+... ......+|.+..+|+++|+|.-....+.+.+..-++..++.+ .++|+......+|..+-..
T Consensus 126 iFa~-------------Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn--~vfGlqlSvAR~GstvNf~ 190 (459)
T KOG4686|consen 126 IFAA-------------GGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELN--FVFGLQLSVARLGSTVNFL 190 (459)
T ss_pred HHHh-------------chHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcccc--chhhHHHHHHHhhceeeee
Confidence 3221 222345699999999999998888888899999999999999 9999999999998877655
Q ss_pred hhccccccccccccccccccccccchhh----HHHHHHHHHHHHHHHHHh-ccccCCC-CCCCCCCCCCccccccccchH
Q 012666 196 TGSFSGWFKILPFTLTSACNVDCANLKS----AFFLDVIFIAITTCISAS-AAHEVPL-GSHDQSAPFSEEGHEQSSDVH 269 (458)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~e~~~-~~~~~~~~~~~~~~~~~~~~~ 269 (458)
+.++ +.+....-.++--+. ...+....+....+.... -.-|++. +..+.++....|+.+
T Consensus 191 lm~~---------ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge~pk------ 255 (459)
T KOG4686|consen 191 LMPF---------LYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGEEPK------ 255 (459)
T ss_pred ecHH---------HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccCCcc------
Confidence 4332 222211111000011 111111111111111111 1111111 111110111001000
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHH
Q 012666 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (458)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (458)
. +..++..+++|.+.+..+++..+++++....+.+++ +.|+.++..+... -..+ -..+.+.+
T Consensus 256 ---L----tdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~-~rfGlS~~~a~~i---------~s~v-y~Isav~s 317 (459)
T KOG4686|consen 256 ---L----TDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQ-KRFGLSAVSAGNI---------LSTV-YGISAVLS 317 (459)
T ss_pred ---c----ccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHH-HhhCCChhhccch---------hhhh-hhhhhhhh
Confidence 0 111222378999999999999999999888887774 5677776554111 1111 23355777
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHh
Q 012666 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (458)
Q Consensus 350 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (458)
++.|.++||.|++-.++.+..+..+.--...+. +.+..+..+.++|+.++......|.+++.
T Consensus 318 pvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F------------------t~lsPy~~m~~lGLsysllAcslWP~va~ 379 (459)
T KOG4686|consen 318 PVFGAISDKYGFNLWWVASACILTLLGHSGLFF------------------TFLSPYTSMTFLGLSYSLLACSLWPCVAS 379 (459)
T ss_pred hhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh------------------hhccHHHHHHHHhhhHHHHHHHHhhhhhh
Confidence 899999999999888776555444333323333 23445677888999998888888999999
Q ss_pred hhcccccccchhhhHHHHHHHhhhhh
Q 012666 430 RTESLGLGQGLSLGVLNLAIVIPQVS 455 (458)
Q Consensus 430 ~~~~~~~~~g~~~g~~~~~~~~~~~i 455 (458)
++|+ ++.|++.|..+...++|-.+
T Consensus 380 ~vpE--~qLGTaygf~qsIqNLgla~ 403 (459)
T KOG4686|consen 380 LVPE--EQLGTAYGFIQSIQNLGLAF 403 (459)
T ss_pred hCCH--HHhcchHHHHHHHHhhhhhH
Confidence 9999 88899888887777776544
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-16 Score=144.11 Aligned_cols=344 Identities=17% Similarity=0.098 Sum_probs=218.4
Q ss_pred HHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCC-CcchhHHHHHHHHHHHHHHHhhcccc-ccccCCCCCCC
Q 012666 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGAISIAVAVLLIGLSADI-GWLLGDRGDFR 135 (458)
Q Consensus 58 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~G-rr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 135 (458)
..|++++....+.+.++..+. ....+.+|+.||+.++.+| ||.++++.+......+..+..++.-. .+...+.....
T Consensus 7 IvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 478999999999988888776 4569999999993332233 88889998887776665554432211 00000111233
Q ss_pred chhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 012666 136 PRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACN 215 (458)
Q Consensus 136 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~ 215 (458)
........+.+.+.|+|.+....+..+++.|..|+|+|+ ++.++...+.-+|.+++..+.+...... .|
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~--~~v~ivw~Mli~G~iv~ai~~g~lL~~~-s~-------- 154 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRP--RVVAIVWVMLIVGIIVSAIVFGRLLDPF-SP-------- 154 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHcccc-CH--------
Confidence 344445667777889999999999999999999999999 9999999999999999998877632211 00
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 012666 216 VDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTA 295 (458)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (458)
......+...+++.++..++..+- .|++..+..+. ++++ +.+....+.+...+ ++.+.++...+
T Consensus 155 ---~rL~~v~~~~a~i~~~l~~ia~wg-~E~r~~~~~~~-------~~~~---~~~f~~a~~~~~~~--~~a~~f~~fl~ 218 (403)
T PF03209_consen 155 ---ERLIQVIQGVALIALLLNLIALWG-QEPRRSRRAAA-------AERP---RPPFREAWRQVWAS--PQARRFFVFLF 218 (403)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHh-cccCCcccccC-------CCCC---CccHHHHHHHHHhC--CChhHHHHHHH
Confidence 122223333333333333333332 23332222210 0000 11112223333344 55555555555
Q ss_pred HHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhcChhhHHHHHHHHHH
Q 012666 296 LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR-KWGAGFIWGISNILMAL 374 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~ 374 (458)
+..++++.-...+-+|=+ ++|+.++.+. .-...+.+.+.+++....+++.. |.++++...+++...++
T Consensus 219 l~t~a~~~QD~iLEPygg-~Vfgmsv~eT----------T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~ 287 (403)
T PF03209_consen 219 LGTLAFFMQDVILEPYGG-EVFGMSVGET----------TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGAL 287 (403)
T ss_pred HHHHHHHhhHHHcCCchh-HHcCCCHHHH----------HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 555554444443444432 4555554442 11122235555666666777655 77888888889999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhh
Q 012666 375 CFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454 (458)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 454 (458)
++.++.... +.. +.+.+.....++|++.|.......+.+.+..++ ++.|..+|++..++.++.-
T Consensus 288 ~f~lii~a~-------------~~~-~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~--~~aG~~mG~WGaaQA~A~G 351 (403)
T PF03209_consen 288 AFALIILAG-------------PLG-SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA--GRAGLFMGAWGAAQAIARG 351 (403)
T ss_pred HHHHHHHHH-------------hcc-cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC--cchhHHHHHHHHHHHHHHH
Confidence 888877764 211 456778888999999999988888999999988 8899999999999888776
Q ss_pred hc
Q 012666 455 SS 456 (458)
Q Consensus 455 i~ 456 (458)
++
T Consensus 352 lg 353 (403)
T PF03209_consen 352 LG 353 (403)
T ss_pred HH
Confidence 54
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=161.44 Aligned_cols=365 Identities=13% Similarity=0.043 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCC----CcchhHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG----RRRPFIV 105 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~G----rr~~~~~ 105 (458)
.....+...++..++. +.....+++++ +++|+++.+++...+...+...+ .+++|.++| |++ |||.+++
T Consensus 26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D----~~~i~G~rRr~~l~ 99 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSD----TFPLFGYTKRWYLV 99 (468)
T ss_pred hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHH----hcCCCCccchHHHH
Confidence 3344455566666666 66555666666 57899999999998988888777 566999999 664 3555555
Q ss_pred HHHHHHH-HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHH
Q 012666 106 CGAISIA-VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (458)
Q Consensus 106 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (458)
.+.+... ..+..+...++ ......+..++.+++.+....+..++..|..+ ++++ ...+....
T Consensus 100 ~~~~l~~~~~~~~l~~~~~--------------~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~--~~~~~~s~ 162 (468)
T TIGR00788 100 LSGLLGSAILYGLLPGKVS--------------SAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS--AGPSLVSW 162 (468)
T ss_pred HHHHHHHHHHHHhcccccc--------------hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC--cCCCeeeH
Confidence 5554442 33222221122 11333346677788999999999999999998 5554 33333333
Q ss_pred ---HHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc--
Q 012666 185 ---FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE-- 259 (458)
Q Consensus 185 ---~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-- 259 (458)
..++|.++++.+++.+.... +|+..|++.+++.++. .+..++.||++....++.++++.
T Consensus 163 ~~~~~~~G~~vg~~l~G~l~~~~---------------~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~ 226 (468)
T TIGR00788 163 MWGASATGGLISSLLGGPLLDKT---------------LTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMN 226 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---------------CcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhh
Confidence 34478888888887643222 7999999888777666 44456677764211111000000
Q ss_pred -cc-cccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHH
Q 012666 260 -EG-HEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALG 337 (458)
Q Consensus 260 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
.. ........++..+++++.+++ |.++..++..++.+....... ....+..+...+.++... ...
T Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~l~~--~~i~~~l~fifl~~~~~~~~~-~~~f~~~~~~lG~s~~~~----------G~~ 293 (468)
T TIGR00788 227 MALLTLGVLANVKVQILGLRGAIQL--LEIAKPLIFIFLSYANLPGAS-GSVFCATTQCLPGGPSFS----------GMS 293 (468)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHHHhhcCCCC-ceeEEEEcccCCCCcchh----------hhH
Confidence 00 000000122334556666666 677665444444111101100 000011112223232221 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHH-HHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHH
Q 012666 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLIL-YYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 416 (458)
Q Consensus 338 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (458)
....+++.+++..+.+++.+|++.|+++.++.++.+++.+..... ..+. .. ......+......++.+++.
T Consensus 294 ~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~------~~--~gi~~~~~~~~~~~l~~~~~ 365 (468)
T TIGR00788 294 KVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWN------LA--FGISDEVFVLGDSIIAEVLA 365 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccc------cc--cCCCCeeeeeehhHHHHHHH
Confidence 333567788889999999999999999999888888776554321 1000 00 00012234555567778888
Q ss_pred HHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 417 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+........++++..|+ +.+|+..|+.+...++|+.+++
T Consensus 366 g~~~~~~~~~~~~~~p~--~~egt~~al~~s~~~lg~~v~~ 404 (468)
T TIGR00788 366 QLKFMPFLVLLARLCPS--GCESSVFALLASILHLGSSVSG 404 (468)
T ss_pred HHHHccHHHHHHHhCCC--CceehHHHHHHHHHHHHHHHHH
Confidence 88888889999999999 8899999999999888887764
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=163.85 Aligned_cols=326 Identities=12% Similarity=0.063 Sum_probs=213.8
Q ss_pred HHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCch
Q 012666 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPR 137 (458)
Q Consensus 58 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (458)
.+....+.....+..+++.++..+++.++|+++| |+|||+++++.. ++..++.+..++++++
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD----~~GRk~~~~~~~-~~~~i~~~~~a~a~~~------------- 171 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSD----RFGRKPVLLVSL-LLFIIFGILTAFAPNY------------- 171 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHh----hcccHHHHHHHH-HHHHHHHHHHHHhCcH-------------
Confidence 3556677788889999999999999999999999 999999988844 4455555767788888
Q ss_pred hHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Q 012666 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217 (458)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 217 (458)
+.+.+.|++.|++.+........++.|++++++|+ .+..+ ......++.+++..+++. .
T Consensus 172 --~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~--~~~~~-~~~~~~~~~~~~~~~a~~-----~----------- 230 (521)
T KOG0255|consen 172 --WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG--LALTL-GGFFFVGGLMLPAGAAYI-----T----------- 230 (521)
T ss_pred --HHHHHHHHHHHhhccchhHHhHhhheeecCcchhh--HHHHH-HHHHHHHHHHHHHHHHHH-----H-----------
Confidence 89999999999999999999999999999999999 88888 666777777777766552 1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccc-----------ccccchHHHH--H-----------
Q 012666 218 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH-----------EQSSDVHEAF--L----------- 273 (458)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~----------- 273 (458)
.+||+.+++..+...+..++ +++.||+++....+.+.++..+. .+.....+.. .
T Consensus 231 -~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (521)
T KOG0255|consen 231 -RDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPK 308 (521)
T ss_pred -hhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCC
Confidence 28999999988877666555 66677988865444332211000 0000000000 0
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012666 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (458)
..+...++. ++++...+...+.++... ...|...+.. ..+ |.... ......+..........+
T Consensus 309 ~~~~~l~~~--~~l~~~~~~~~~~~~~~~-~~y~gl~~~~-~~l------------g~~~~-~~~~~~~~~~~p~~~~~~ 371 (521)
T KOG0255|consen 309 ISFLDLFRT--PRLRYRTLYLLFIWFVFS-LVYYGLSLNV-SGL------------GGNIY-LNFTLSGLVELPAYFRNG 371 (521)
T ss_pred CchhhhhcC--HHHHHHHHHHHHHHHHHh-HHHHhhhhhh-hhc------------CchHH-HHHHHHHHHHhhHHHHHH
Confidence 011222333 334444333333332211 1111111111 111 11111 112223445666777778
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcc
Q 012666 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (458)
Q Consensus 354 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (458)
...||.|||.....+..+..++++...+.. .....+...+...+...+.+..+...+.+.+|..|+
T Consensus 372 ~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt 437 (521)
T KOG0255|consen 372 LLLPEFGRRPPLFLSLFLAGIGLLLFGWLP--------------DDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT 437 (521)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHhh--------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 999999999999999999999998888874 111111233333333444555555668999999999
Q ss_pred cccccchhhhHHHHHHHhhhhhcC
Q 012666 434 LGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 434 ~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
..|..+.+..+....++.++++
T Consensus 438 --~~r~~~~~~~~~~~~~~~i~ap 459 (521)
T KOG0255|consen 438 --VVRNTAVGAISAAARLGSILAP 459 (521)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888877653
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-22 Score=193.75 Aligned_cols=330 Identities=14% Similarity=0.184 Sum_probs=196.5
Q ss_pred hhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcc---ccccccCCCCCCCchhHHHHH
Q 012666 67 WASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA---DIGWLLGDRGDFRPRAIAVFV 143 (458)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 143 (458)
+.++..+...++..+++++.|+++| |+|||+.++. +..+..++.++..+++ +. +.+.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d----~~GRk~~~~~-~~~~~~i~~~~~~~~~~~~~~---------------~~~~ 106 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLAD----RYGRKPALII-SALLMIIGSILIAFAPSYNNF---------------WMLL 106 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccc----cccccccccc-ccccccccccccccccccccc---------------cccc
Confidence 4678899999999999999999999 9999999888 5555666666666766 55 8888
Q ss_pred HHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhh
Q 012666 144 FGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKS 223 (458)
Q Consensus 144 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (458)
++|++.|++.+...+....++.|..|++.|+ +..++.+....+|..++..++....... + ...||.
T Consensus 107 ~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~------~------~~~Wr~ 172 (451)
T PF00083_consen 107 IGRFLIGFGIGGAYVVSPIYISEIAPPKHRG--FLSSLFQLFWALGILLASLIGYIVSYYS------D------NWGWRI 172 (451)
T ss_pred ccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccc------c------cccccc
Confidence 9999999999999999999999999999999 9999999888888888877654321110 0 126998
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccc------------cc-ccc-chHHHH---HHHHHHHHhcch--
Q 012666 224 AFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG------------HE-QSS-DVHEAF---LWELFGTFRYFS-- 284 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~------------~~-~~~-~~~~~~---~~~~~~~~~~~~-- 284 (458)
.+.+.++..++.. +..+++||+|+....+.+.++.++ ++ ++. ++.++. .....+.+++..
T Consensus 173 ~~~~~~~~~l~~~-~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (451)
T PF00083_consen 173 LLIFGAIPSLLVL-LLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYR 251 (451)
T ss_pred ccccccccccccc-ccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecccccccc
Confidence 8888777665543 445788999876433322221100 00 000 000000 011222222210
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChh
Q 012666 285 GTIWIILIVTALTWL-GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF 363 (458)
Q Consensus 285 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 363 (458)
+++...+....+..+ +......|.+.... . .+.+.. ........+...++.++...+.||+|||+
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~-~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~GRr~ 317 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFE-N-AGISNS------------FLATLILGLVNFLGTLLAIFLIDRFGRRK 317 (451)
T ss_pred cccccccccccccccccccccccccccccc-c-cccccc------------ccccccccccccccccccccccccccccc
Confidence 122222222222211 22223333333221 1 111111 01112233445566677779999999999
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHH-HHhhchhHhHHhhhcccccccchh
Q 012666 364 IWGISNILMALCFLAML-ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA-ITYSVPYALVSIRTESLGLGQGLS 441 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 441 (458)
+++.+..+++++.+.+. ...... + .+.... ...+....+....++ ...+..+.+..|.+|. +.|++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~-~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt--~~R~~~ 386 (451)
T PF00083_consen 318 LLIIGLLLMAICSLILGIIFFLGV-S-------SSSWWS-ILSIVFLALFFAFFSLGWGPLPWIYTAELFPT--KVRSTG 386 (451)
T ss_pred cccccccccccccccccccccccc-c-------cccccc-cccceeeeeccccccccccccccccccccccc--cccccc
Confidence 99998888888777665 111000 0 000001 111222222222222 2346777899999999 777777
Q ss_pred hhHHHHHHHhhhhhc
Q 012666 442 LGVLNLAIVIPQVSS 456 (458)
Q Consensus 442 ~g~~~~~~~~~~~i~ 456 (458)
.|+.+....++.+++
T Consensus 387 ~~~~~~~~~i~~~i~ 401 (451)
T PF00083_consen 387 IGLSYAVGRIGGFII 401 (451)
T ss_pred ccccccccccccccc
Confidence 777777766666554
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-15 Score=147.63 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccc
Q 012666 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (458)
Q Consensus 48 ~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (458)
+....+.+.+.+++|+|..+.+++.++... .....++.|+++| |+|||+++++ +.++..++.+..+++.+.
T Consensus 44 y~fsv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~D----r~G~R~vlli-g~ll~~iG~ll~ala~~~--- 114 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYD----YLGPRPIFVL-SMTVFCLGTLLFALTFQE--- 114 (591)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHH----HhCcHHHHHH-HHHHHHHHHHHHHHHhcc---
Confidence 344566777889999999999998877544 3456777899999 9999998887 555566666666554110
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHh-hhccccccccc
Q 012666 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA-TGSFSGWFKIL 206 (458)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~-~~~~~~~~~~~ 206 (458)
......+.+.+.+.+.|++.+...+.....+.+++| ++|| ++.|+.....++|..+.+. ..++..
T Consensus 115 ------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG--~a~Gi~~~~~gLGsaI~~~l~~~l~~----- 180 (591)
T PTZ00207 115 ------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG--AVVAIMKTFTGLGSAILGSIQLAFFS----- 180 (591)
T ss_pred ------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 011234778888999999998888888889999997 7789 9999999999999976444 333211
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCC
Q 012666 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 247 (458)
.+|+..|++.+++.++..++.+.++++++
T Consensus 181 ------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 181 ------------DNTSAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred ------------HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 16777888888888777777777776654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.3e-15 Score=130.30 Aligned_cols=300 Identities=14% Similarity=0.152 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 012666 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (458)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (458)
......+.++.+.+++|+|.+..|+++++..++..+.+|+..++.. |+|.+|.+.. +.++..++..+=...
T Consensus 27 ~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar----~~g~er~l~~-~Llli~~G~~iR~~~---- 97 (395)
T COG2807 27 AITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLAR----RFGEERSLFL-ALLLIAAGILIRSLG---- 97 (395)
T ss_pred hhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHhhHHHHHH-HHHHHHHHHHHHhcc----
Confidence 5566677888889999999999999999999999999999999999 9999888776 444444444433221
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccc
Q 012666 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (458)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (458)
....++.+..+.|.+.+..+...++++.+.+|+ +-+ ..++++....++|..+++.+..-
T Consensus 98 ------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~--~mtglYs~sl~~~aaLaa~lavp------ 156 (395)
T COG2807 98 ------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVG--LMTGLYSTSLGAGAALAAALAVP------ 156 (395)
T ss_pred ------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chh--hHHhHHHHHHHHHHHHHhhhhhH------
Confidence 226778888899999999999999999999984 456 79999999999999988877432
Q ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchH
Q 012666 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSG 285 (458)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (458)
..... .+|+....+-+...++..++.+ |...++.... .+ .+ .++-.+.+|+ |
T Consensus 157 --la~~~------~gW~~aL~~WAl~allAl~~Wl---Pq~~r~~~~~---~~--~~----------~~~~~~vw~~--~ 208 (395)
T COG2807 157 --LAQHS------GGWRGALGFWALLALLALLIWL---PQALREQAAS---IA--TK----------LVSVRKVWRS--P 208 (395)
T ss_pred --HHHhh------ccHHHHHHHHHHHHHHHHHHHh---hhcccccccc---cc--cc----------cccccccccC--c
Confidence 22211 3799988887776665554443 2221111000 00 00 0011234566 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhh
Q 012666 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAGFI 364 (458)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~ 364 (458)
.-|.+.+.+.+....++....+.|.++.+.- .+.. .+...+....+..++.++..+.+.+|. .+|+.
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G--~sa~----------~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~ 276 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILIDRG--LSAA----------EAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL 276 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC--CCHH----------HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 7888888888888899999999999885332 1111 112233345778889999999999975 55666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcc
Q 012666 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (458)
.....+++.++.+.+.+.+ .. .+... .+++|++.+..++....++.+..++
T Consensus 277 ~~~~~~~~l~G~~G~~~~P--------------~~--~~~lw--~~llG~G~G~~F~laL~li~~rs~~ 327 (395)
T COG2807 277 VVLALLLMLVGLVGLLLAP--------------GQ--LPILW--ALLLGLGQGGAFPLALTLILLRSSD 327 (395)
T ss_pred HHHHHHHHHHHHHHHHHhh--------------hh--HHHHH--HHHHhCccchHHHHHHHHHHhhcCC
Confidence 6777778888888877763 21 11122 5888999999998888888887665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-14 Score=132.05 Aligned_cols=373 Identities=17% Similarity=0.156 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC----CCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELG----IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g----~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~ 105 (458)
|.++.+...-+-..++++.....+..|+ .+++ +|++++.-+.+.+...--+...++|+++|| -+|+||+++.
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr---~LG~~~tI~l 97 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADR---VLGTRRTIVL 97 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHH---hcchhHHHHH
Confidence 4455555555556688888777777776 5555 999998888888887778889999999993 3599999888
Q ss_pred HHHHHHHHHHHHHhhcc--ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHH
Q 012666 106 CGAISIAVAVLLIGLSA--DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (458)
Q Consensus 106 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (458)
+.++..++.++++.+. .. ..+.++..+..+|.|..-+...+++.|..|+++.+....+++..
T Consensus 98 -Gail~~iGh~~L~~~~~~~~---------------~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY 161 (498)
T COG3104 98 -GAILMAIGHLVLAISSVSGP---------------GGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFY 161 (498)
T ss_pred -HHHHHHHHHHHHhccccccc---------------cHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEE
Confidence 5555777777776553 22 45667777777999999999999999999876533336889999
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCC---CCCCCCCCcc
Q 012666 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS---HDQSAPFSEE 260 (458)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~ 260 (458)
+..++|.+++|.+.++..... +|...|...++-..+..+..++..+...... ++...+....
T Consensus 162 ~~iNiGsl~~p~i~~~~~~~~---------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~ 226 (498)
T COG3104 162 MGINIGSLIAPIITGLLAINY---------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFL 226 (498)
T ss_pred EEeehHHHHHHHHHHHHHHhh---------------CHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhh
Confidence 999999999999977644333 8999999988777666655544332211111 1110000000
Q ss_pred cccc---------c---cchHHHHHH-------------HHHHHHh-----cchHHHHHHHHHHH---HHHHHHH----H
Q 012666 261 GHEQ---------S---SDVHEAFLW-------------ELFGTFR-----YFSGTIWIILIVTA---LTWLGWF----P 303 (458)
Q Consensus 261 ~~~~---------~---~~~~~~~~~-------------~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~----~ 303 (458)
.... . .....+.++ -+.+.++ +.+++.+..+.... +.|..+. .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ss 306 (498)
T COG3104 227 LPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSS 306 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 0000 0 000000000 0001111 11133333332222 2222211 1
Q ss_pred HHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-------hhHHHHHHHHHHHH
Q 012666 304 FLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG-------FIWGISNILMALCF 376 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-------~~~~~~~~~~~~~~ 376 (458)
...|......++.++.+. ..+ +.-.++.+..++.+++..++..|.+++ .-+.++..+++.++
T Consensus 307 l~~~a~~~v~~~~~g~~v----------p~~-~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~f 375 (498)
T COG3104 307 LNLYADRNVNRQIFGFEV----------PPA-WFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGF 375 (498)
T ss_pred HHHHHHHhhcccccceec----------CHH-HHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHH
Confidence 222222222222122111 111 222334555566666666666664333 12456778888888
Q ss_pred HHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 377 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+++.......... .+..+.++.+...++.++|.-...++..+++....|+ +-.+..++++-+....++.++
T Consensus 376 l~l~~~~~~~~~~-------~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~--~~~s~~ma~wfLt~a~~~~l~ 446 (498)
T COG3104 376 LILLLAGIWFGGP-------SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP--ALKSFIMAMWFLTVAAGQTLG 446 (498)
T ss_pred HHHHHHHHhhcCC-------CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHhh
Confidence 8777664322210 2223577888899999999999999999999999999 899999999999999999887
Q ss_pred C
Q 012666 457 C 457 (458)
Q Consensus 457 ~ 457 (458)
+
T Consensus 447 g 447 (498)
T COG3104 447 G 447 (498)
T ss_pred c
Confidence 5
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=142.75 Aligned_cols=388 Identities=17% Similarity=0.121 Sum_probs=217.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCC-c
Q 012666 24 ARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE--LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-R 100 (458)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Gr-r 100 (458)
+.++.+||.++......+......++..+-.-+|+++ .+.+.+..|++.++..++.++.+|.+|+++. |.++ |
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~----k~~~~k 102 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSN----KTGSVK 102 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccc----ccCCcc
Confidence 3445666767766666666666666666666788877 6777788999999999999999999999999 8775 7
Q ss_pred chhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhH
Q 012666 101 RPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180 (458)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 180 (458)
++++.+..+ .+++.++....... .....++++++|++.|+|.+. .....+|+++....++|. ++++
T Consensus 103 ~Pli~s~ii-~~~g~llY~~l~~~----------~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~--rA~a 168 (488)
T KOG2325|consen 103 KPLIVSFLI-AIIGNLLYLALAYV----------PNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRP--RAFA 168 (488)
T ss_pred cCHHHHHHH-HHHHHHHHHHHHhc----------ccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchH--HHHH
Confidence 888875544 45554444222211 111458888999999888764 466789999988889999 8998
Q ss_pred HHHHHHHHHHHHHHhhhcccc-----ccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCC
Q 012666 181 YFSLFMAVGNILGYATGSFSG-----WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSA 255 (458)
Q Consensus 181 ~~~~~~~~g~~ig~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 255 (458)
....+..+|.++||.++.... ...+.|- ..-+-+...-|+.+++.++..++..++.+|.++...++..
T Consensus 169 ~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~-------~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~ 241 (488)
T KOG2325|consen 169 ATSGGFVLGIILGPTIQLAFTPLGEKGFMILPG-------LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKK 241 (488)
T ss_pred HhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCc-------ceEEecchHHHHHHHHHHHHHHHHHhheeecccCcccccc
Confidence 888888888888888766511 0111110 1112455566777888888888888888888766544322
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhH
Q 012666 256 PFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIIL-IVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMG 334 (458)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (458)
+.+++++.+ .++ .+ ..+.++.....+ ...+...+.........+.+. ...|+.+...+..+ .
T Consensus 242 ~~~~~~~~~-~~~--------~~-~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~-m~~y~w~~~~av~~------~ 304 (488)
T KOG2325|consen 242 RSVEEEKSD-IEK--------VK-KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALT-MVMYGWTGSEAVLY------N 304 (488)
T ss_pred ccchhhccc-hhh--------hc-cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHH-HHHhccccchHHHh------h
Confidence 222111110 000 00 011111111111 222222222222121112111 23344333332111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhcChhhHHHHHHHHHHHHHHHHHHHHHhh-h-c------------ccCCCC-CCC
Q 012666 335 ALGLMLNSVVLGITSVLMEKLC-RKWGAGFIWGISNILMALCFLAMLILYYVAI-H-M------------DYRGHD-LPP 398 (458)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~g~l~-dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~-~------------~~~~~~-~~~ 398 (458)
.......++..+...+...... .|+.+|+.+..+.+....+..+..+...... + . +|.|=+ .+.
T Consensus 305 gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~ 384 (488)
T KOG2325|consen 305 GITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTA 384 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcc
Confidence 1112222333333333333332 3334566666554444444433322110000 0 0 000001 111
Q ss_pred chHHHH-HHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 399 NGIVIA-ALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 399 ~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
...+. .+...+++|.++........++.+|...+ +.+|+..|++++...++..++
T Consensus 385 -v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp--~~q~~~qg~~~~~~s~~~~~~ 440 (488)
T KOG2325|consen 385 -VPLILYLISFIVVFGIAFPFISTALDTLYSKILGP--RDQGTMQGVFSISGSIARVVG 440 (488)
T ss_pred -cChhhheeehhheeccccccccchHHHHHHHHhCC--ccccceeEEEEeccchhhhhh
Confidence 11222 33345566777777777788999999999 999999999888887777766
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-14 Score=130.41 Aligned_cols=268 Identities=10% Similarity=0.041 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccccc-ccccc
Q 012666 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT-SACNV 216 (458)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~-~~~~~ 216 (458)
.+..+++..++.|.|.+..++..+.+++++.++|++. +.+++.+.++++|..++|.+++............. ...+.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~--~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~ 86 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAA--SRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANA 86 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHH--HHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhH
Confidence 3478889999999999999999999999999999888 89999999999999999999886321100000000 00000
Q ss_pred cccchhhHHHHHHHHHHHHHHHH-HhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 012666 217 DCANLKSAFFLDVIFIAITTCIS-ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTA 295 (458)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (458)
....|++.|++.+.+..+..++. ....||.++++.+ + ..+++.. +.++.+++ |.++...+..+
T Consensus 87 ~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~-----~--~~~~~~~-------~~~~~~~~--~~~~l~~~~~f 150 (310)
T TIGR01272 87 EAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVA-----R--VSSGDTT-------QKTSAFQF--THLVLGALGIF 150 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccc-----c--ccccccc-------chhhHHhh--HHHHHHHHHHH
Confidence 11378888886665544444332 2333443211110 0 0000000 00123344 56666666666
Q ss_pred HHHHHHHHHHHhhhhhhhce-eccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Q 012666 296 LTWLGWFPFLLFDTDWMGRE-IYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMAL 374 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 374 (458)
++...-.....|.+.|+.+. .++.++ .........+..+.++++++.+++.||+|+|+.+.++..+..+
T Consensus 151 ~yvg~e~~~~~w~~~yl~~~~~~g~s~----------~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~ 220 (310)
T TIGR01272 151 VYVGAEVSAGSFLVNFLSDPHALGLPE----------DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 66656777788888888532 233332 2223344456677789999999999999999988877777666
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhh
Q 012666 375 CFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454 (458)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 454 (458)
+.++.... +. .. ......+.|++.+..+|...+...+..|+ ..+++.++. ....+|..
T Consensus 221 ~~~l~~~~--------------~~---~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~---~~~~asai~-~~~~~Gg~ 278 (310)
T TIGR01272 221 LSIGAALT--------------HG---YV-AMWFVLALGLFNSIMFPTIFSLALNALGR---HTSQGSGIL-CLAIVGGA 278 (310)
T ss_pred HHHHHHHc--------------CC---HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhhhHHHH-HHHHhcch
Confidence 65444433 11 11 22355578899999999999999888875 244555554 34445544
Q ss_pred h
Q 012666 455 S 455 (458)
Q Consensus 455 i 455 (458)
+
T Consensus 279 i 279 (310)
T TIGR01272 279 I 279 (310)
T ss_pred H
Confidence 3
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-14 Score=128.19 Aligned_cols=331 Identities=15% Similarity=0.035 Sum_probs=195.4
Q ss_pred HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchh
Q 012666 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRA 138 (458)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (458)
+.+| +....-|...++++.+......+-|+.| |+|-|...++++...++.+.+=..-+... -.....
T Consensus 73 ~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ld----k~GLR~a~llgt~ln~iGa~Ir~iss~p~--------v~~~f~ 139 (480)
T KOG2563|consen 73 SFYG-SSSAADWLSMIYMVVSVPFGFAAMWILD----KFGLRTALLLGTVLNGIGAWIRLISSLPF--------VPPLFR 139 (480)
T ss_pred HHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhc----ccchHHHHHHHHHHHHHHHHHhhhccCcc--------ccccch
Confidence 4466 7777889999999999999999999999 99999999887766666555533222111 011112
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccc
Q 012666 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDC 218 (458)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (458)
..+...+..+.+...-.....-.-+..-|+++++|. .+..+..+...+|..++.++..++ .|... +...
T Consensus 140 ~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra--~A~~~~v~~n~LGvavg~llppil-----V~~~~----~~~~ 208 (480)
T KOG2563|consen 140 RPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA--IATVLGVMGNPLGVAVGFLLPPIL-----VPSSK----DSED 208 (480)
T ss_pred hhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh--hhhhHHHhcchHHHHHHhhcccee-----cCCCC----Ccch
Confidence 236667777766665555554455667799999999 888888888889999998886652 22110 1111
Q ss_pred cchhh--HHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 012666 219 ANLKS--AFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTAL 296 (458)
Q Consensus 219 ~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (458)
..|.. .|+...++..+..++..+..+++|+.+....+..++ +.+..+.+++.+++ +++..+.+.+.+
T Consensus 209 ~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~si~~~~~n--~~F~il~~~ygi 277 (480)
T KOG2563|consen 209 NSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKSIKSCFKN--RQFIILAICYGI 277 (480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHHHHHHHcC--ccHHHHHHHHhh
Confidence 23333 344444444444455555555655544332111110 12356788888898 777776665555
Q ss_pred HHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHH
Q 012666 297 TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF-IWGISNILMALC 375 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~ 375 (458)
....++........-+... +|+. ...+..+.. ..+++++++++.|.+.||.+.-+ ...+......++
T Consensus 278 ~~g~F~~l~~~l~~~l~~s----------gY~~-~~aG~ig~l-~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 278 GLGLFNSLSTLLNLALCPS----------GYEG-VFAGYIGAL-MIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred hHHHHHHHHHHhhhccccc----------cCCc-cccchhHHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4444444433332122111 2221 122323333 46678899999999999987644 344444444444
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHh
Q 012666 376 FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI 451 (458)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 451 (458)
.+.+...+ ......+.++....++|......+|+-..+..|..=| ...|+..|+.|+..++
T Consensus 346 ~~~l~~~t-------------~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP--v~E~tSsGll~~~gq~ 406 (480)
T KOG2563|consen 346 TLMLLTCT-------------LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYP--VAEGTSSGLLNLSGQI 406 (480)
T ss_pred HHHHHHhh-------------ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccc--cCCcccceeEEeehhH
Confidence 32222222 1111334556666677777777778778888887555 4455666666555444
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=132.54 Aligned_cols=322 Identities=12% Similarity=0.110 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (458)
.++...+...+........+..+.+.++++.++.|++.+.+-++..+...+..+..- |..| ..++..+.+.+.++
T Consensus 101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~----r~Hr-Pr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGS----RGHR-PRWIGIGLVLMGLG 175 (735)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcc----ccCc-cceeeechhHHHHH
Confidence 344455555555566666777778899999999999999999999999999999988 7655 44555566666666
Q ss_pred HHHHhhccccccccC------------C-------------C------------CCCCchhHHHHHHHHHHHHHHhhhcc
Q 012666 115 VLLIGLSADIGWLLG------------D-------------R------------GDFRPRAIAVFVFGFWILDVANNMTQ 157 (458)
Q Consensus 115 ~~~~~~~~~~~~~~~------------~-------------~------------~~~~~~~~~~~~~~~~~~g~~~~~~~ 157 (458)
.++..+.+-+..-+. + + .......+.+++++.++.|+|....+
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 666655422111110 0 0 02223356678899999999999999
Q ss_pred hhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccc----ccccccccccccccchhhHHHHHHHHHH
Q 012666 158 GPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI----LPFTLTSACNVDCANLKSAFFLDVIFIA 233 (458)
Q Consensus 158 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (458)
+...+|+-|...+++-. ...|+......+|.++|.++|++....+. -|...+..+....+.|+..|++.+.+.+
T Consensus 256 tlGisYiDDnvk~~~Sp--lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSP--LYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL 333 (735)
T ss_pred cCCCccccccccccCCc--HHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 99999999999988888 99999999999999999999998432221 1222233444555789999999999988
Q ss_pred HHHHHHHhccccCCCCCCCCCC---CCCccc------cccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 012666 234 ITTCISASAAHEVPLGSHDQSA---PFSEEG------HEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPF 304 (458)
Q Consensus 234 ~~~~~~~~~~~e~~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (458)
+..+..+++.++.|+..++.+. +..+++ +.+..+..++..+.+++.++| |.+...++...+....+.++
T Consensus 334 ~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N--~if~~~~l~~~~~~~~~~G~ 411 (735)
T KOG3626|consen 334 FSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSN--PIFMLVVLASVIESLAITGY 411 (735)
T ss_pred HHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhhH
Confidence 8888887777776654321110 101111 111112234556667777777 88888888888888999999
Q ss_pred HHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhc--ChhhHHHHHHHHHHH
Q 012666 305 LLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG--AGFIWGISNILMALC 375 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~ 375 (458)
..|.|.|+ +..|+.+...+..+ .+. +.-.+..++.+++|++.+|+. .|....+..+...++
T Consensus 412 ~tFlPKyL-E~Qfg~sas~An~l--------~G~-i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~ 474 (735)
T KOG3626|consen 412 ITFLPKYL-ETQFGISASLANIL--------TGS-IGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS 474 (735)
T ss_pred HHhhHHHH-HHHcCCCHHHHHHH--------hhh-hhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence 99999999 45566555443111 111 122233566789999999874 344444433333333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-16 Score=151.34 Aligned_cols=314 Identities=14% Similarity=0.110 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHH
Q 012666 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (458)
+++..+.+..........++.+.++++++.++.|++.+.+-++..+..++..++.+ |. +|..++..+.+++.++.
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~----~~-hrprwig~g~~~~~~g~ 82 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGG----RG-HRPRWIGIGALLMGLGS 82 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----hc-CCcceeeecHHHHHHHH
Confidence 34444444444555566778888999999999999999999999999999999999 74 55667777777788887
Q ss_pred HHHhhccccccccCCC-----------------------------------CCCCchhHHHHHHHHHHHHHHhhhcchhh
Q 012666 116 LLIGLSADIGWLLGDR-----------------------------------GDFRPRAIAVFVFGFWILDVANNMTQGPC 160 (458)
Q Consensus 116 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (458)
++..+.+-....+..+ .......+++++++.++.|+|....++..
T Consensus 83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG 162 (539)
T PF03137_consen 83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG 162 (539)
T ss_dssp ---------------------------------------------------------------------SSS--------
T ss_pred HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence 7776543222211000 11223356788899999999999999999
Q ss_pred HHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccc-ccccc------ccccccccccchhhHHHHHHHHHH
Q 012666 161 RALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK-ILPFT------LTSACNVDCANLKSAFFLDVIFIA 233 (458)
Q Consensus 161 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 233 (458)
.+|+-|.+++++-+ ...|+......+|.++|.++++.....+ -++.. .+.......+.|+..|.+.+++.+
T Consensus 163 ~tYiDDnv~~~~sp--lYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~ 240 (539)
T PF03137_consen 163 ITYIDDNVSKKNSP--LYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF 240 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeccccccccCc--cchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999988 9999999999999999999998732211 01111 111222344578888988888888
Q ss_pred HHHHHHHhccccCCCCCCCCC--CC----CCcc--cccccc-------chHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 012666 234 ITTCISASAAHEVPLGSHDQS--AP----FSEE--GHEQSS-------DVHEAFLWELFGTFRYFSGTIWIILIVTALTW 298 (458)
Q Consensus 234 ~~~~~~~~~~~e~~~~~~~~~--~~----~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (458)
+..+....+.|+-|...+.++ +. +++. ++.+++ +..++..+.+++.++| +.+....+......
T Consensus 241 l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~N--p~f~~~~la~~~~~ 318 (539)
T PF03137_consen 241 LSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTN--PVFMCLILAGVFES 318 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcC--hHHHHHHHHHHHHH
Confidence 777777766655554411100 00 0000 000000 1223445556666777 77887778888888
Q ss_pred HHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhc--ChhhHHHH
Q 012666 299 LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG--AGFIWGIS 368 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~ 368 (458)
.....+..|.|.|+ +..|+.++..+..+ .+.+ .-.+.+++.+++|.+.+|+. .|..+.+.
T Consensus 319 ~~~~G~~tF~pKyl-E~QF~~sas~A~~l--------~G~v-~ip~~~~G~llGG~ivkk~kl~~~~~~~~~ 380 (539)
T PF03137_consen 319 FIVSGFATFLPKYL-ESQFGLSASQASLL--------TGIV-SIPGAALGILLGGYIVKKFKLSARGAAKFC 380 (539)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHhCCCHHHHHHH--------Hhhh-hcchhheehheEEEEEEEecCcHHHHHHHH
Confidence 88888999999999 45677666554111 1111 12234577789999999874 34444333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-13 Score=126.98 Aligned_cols=353 Identities=17% Similarity=0.206 Sum_probs=200.4
Q ss_pred HHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCC-CcchhHHHHHHHHHHHHHHHhhccccccccCCC
Q 012666 53 LLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (458)
Q Consensus 53 ~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (458)
..+.+.+++|+++.+...+.++..+.. ...|+.|.++|... -+| |||++++.+.++..++...+...+..
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~p-i~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFP-IFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhccccc-ccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 344555889999999998888877764 45889999999432 224 78888887777776655555544332
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccccc--chhhhhhHHHHHHHHHHHHHHHhhhcccccccccccc
Q 012666 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH--RRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209 (458)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~ 209 (458)
........+..++..++.........+++.|...++. |+ ...+.......+|.+++..++|......
T Consensus 83 ----~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g--~lqS~~~~~~~~G~lv~~~l~G~l~~~~----- 151 (433)
T PF03092_consen 83 ----ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRG--DLQSFVWGVRSVGSLVGSLLSGPLLDSF----- 151 (433)
T ss_pred ----cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHHHHhhhhhhhcC-----
Confidence 1122344455666778999999999999999985443 45 7788888888999999988887643322
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHHHH
Q 012666 210 LTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWI 289 (458)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (458)
+.+..|.+.+++..+..+..++..+|++..+..+.....+++.+......++..+++++.+++ +..+.
T Consensus 152 ----------~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~i~~ 219 (433)
T PF03092_consen 152 ----------GPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQ--RAIWQ 219 (433)
T ss_pred ----------CCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhh--hHHHH
Confidence 677788888877777766676777763222221111111111111111134556667777776 66665
Q ss_pred HHH-HHHHHHHHHHHHHHhh-hhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHH
Q 012666 290 ILI-VTALTWLGWFPFLLFD-TDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 367 (458)
Q Consensus 290 ~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 367 (458)
..+ ..++.... ....-. ..|...+..+ ..+++.. ..+... .+..++.+++..+..+...+..-|+++.+
T Consensus 220 ~~~~~~~~~~~~--~~~~~a~~fy~~~~~~~-----gp~fs~~-f~~~~~-~vg~~~~l~g~~~y~~~~~~~~~R~~~~~ 290 (433)
T PF03092_consen 220 PILFFIFFFNLP--PSISSASSFYFQTDALG-----GPHFSPS-FYGTLS-IVGSIASLLGILLYRKYFSNWSWRRIFVV 290 (433)
T ss_pred HHHHHHHHHHhc--cCCCCccEEEEEecccc-----ccccCHH-HHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 544 11111111 000000 1111111111 0001110 011222 33555666666777777667777777776
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhcccCCCC-CCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHH
Q 012666 368 SNILMALCFLAMLI-LYYVAIHMDYRGHD-LPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVL 445 (458)
Q Consensus 368 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 445 (458)
+.++.++..+.-.. .. +++-.. .|+. +..+.--++..+.....+-....+++|+.|+ ...|+.+|++
T Consensus 291 t~~~~~~~~l~~~~lv~------~~n~~~Gi~d~---~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~--G~Egt~yall 359 (433)
T PF03092_consen 291 TTLVSVLASLFDLLLVT------RWNLDLGIPDQ---WFALGDTILEEVIGMIAFMPSLVLAARLCPK--GSEGTVYALL 359 (433)
T ss_pred HHHHHHHHhcccEEEEE------EEeeeeCcCCe---EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCC--CchHHHHHHH
Confidence 66655443332111 11 000000 1221 2222223333333334443445789999999 8889999988
Q ss_pred HHHHHhhhhhcC
Q 012666 446 NLAIVIPQVSSC 457 (458)
Q Consensus 446 ~~~~~~~~~i~~ 457 (458)
..+.++|..++.
T Consensus 360 ~s~~Nlg~~~s~ 371 (433)
T PF03092_consen 360 ASFSNLGSSVSS 371 (433)
T ss_pred HHHHHHHHHHHH
Confidence 888888877653
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-11 Score=117.94 Aligned_cols=308 Identities=17% Similarity=0.129 Sum_probs=191.4
Q ss_pred hhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHH--HH
Q 012666 75 GPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILD--VA 152 (458)
Q Consensus 75 ~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~ 152 (458)
..+...+.++..|.++| |+|||..+.+ ......+..++..+.. +++++ +.+ .+
T Consensus 71 ~~~~~~i~s~~iG~lSD----~~grk~~L~~-~~~~~~l~~~~~~~~~-----------------~~~~~---~~~l~g~ 125 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSD----RYGRKVVLLL-PLFGTILPALCLLFQG-----------------YWFFL---LLGLSGG 125 (463)
T ss_pred hHHHHHHHHhhhHHhhh----hhhhhhhHHH-HHHHHHHhHHHHHHHH-----------------HHHhh---hcccccc
Confidence 35677899999999999 9999888777 4444444444443321 22222 222 34
Q ss_pred hhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHH
Q 012666 153 NNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFI 232 (458)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (458)
.........++++|....++|. ...++.+.....+..+++.+++...... +....|.+..+..
T Consensus 126 ~~~~~s~~~a~vadis~~~~R~--~~~gll~~~~~~~~~~~p~~~~~~~~~~---------------~~a~~f~ia~~~~ 188 (463)
T KOG2816|consen 126 FSAIFSVGFAYVADISSEEERS--SSIGLLSGTFGAGLVIGPALGGYLVKFL---------------GIALVFLIAAASG 188 (463)
T ss_pred hhhhhhhhhhheeeccchhHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHhc---------------CchHHHHHHHHHH
Confidence 4556677789999999999999 9999999999999999999988743322 7777899999999
Q ss_pred HHHHHHHHhccccCCCCCCCCC-CCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-HHHHHHhhhh
Q 012666 233 AITTCISASAAHEVPLGSHDQS-APFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG-WFPFLLFDTD 310 (458)
Q Consensus 233 ~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 310 (458)
++..+...+++||+..+++++. ...+.+..........+..+...+ .+. .|..+.++...++.... .....-....
T Consensus 189 ~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~r~~l~l~l~~~~~~~~~~~~~~~~~~~ 266 (463)
T KOG2816|consen 189 ILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTK-VGP-DRLLLLLLLVAFLSSLPEAGGASDVLLL 266 (463)
T ss_pred HHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcc-cCC-CccchHHHHHHHHHHHHHhcCceeEEEE
Confidence 9999999999999876555442 111111111111112222222222 222 23444433333322221 1111101222
Q ss_pred hhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012666 311 WMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM-EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHM 389 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (458)
|+ ...++.+.... +.+ ....+....++.++. +.+...+|.|++...|.....+....+.+.+
T Consensus 267 yl-~~~f~w~~~~~---------s~~-~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~------ 329 (463)
T KOG2816|consen 267 YL-KAKFGWNKKEF---------SDL-LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT------ 329 (463)
T ss_pred EE-eeecCcCHHHH---------HHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc------
Confidence 22 23344333321 111 222455556666544 4788888999988899999999999888874
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 390 DYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
..|..+....+ ........+...+.++..+++ +++|+++++......+...+++
T Consensus 330 -----------~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~--~e~g~v~~~is~i~~l~~~~~~ 383 (463)
T KOG2816|consen 330 -----------ETWMMFAAGVV-VALAGIVFPAIRAFASILVSP--EEQGKVFGIISGIEGLSGVVSP 383 (463)
T ss_pred -----------cchhhhHHHHH-HHhhcchhHHHHhHHHhhccc--ccccchhhHHHHHHHHhhhhhH
Confidence 23333333333 233444566777888898888 8999999999999988887764
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-13 Score=127.41 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCc--------hhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHH
Q 012666 45 FGWALQLSLLTPYVQELGIPH--------AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~ 116 (458)
........+.+.+.++.|.++ .+.+.+.++..+...++.++.|+++| |+|||+.++.. .+...+...
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~d----r~g~r~~l~~~-~~~~~v~~~ 296 (418)
T TIGR00889 222 APLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLK----RFGIKKVMLLS-LVAWALRFG 296 (418)
T ss_pred hHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHH-HHHHHHHHH
Confidence 333445567788887777554 56688889999999999999999999 99999987774 444445444
Q ss_pred HHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHH-HHHHHHHHHHHh
Q 012666 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVGNILGYA 195 (458)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g~~ig~~ 195 (458)
......+. ....+.+++...+.+++.+...+....++.|.+|+++|+ ++.++.+ ...++|..+|+.
T Consensus 297 l~~~~~~~-----------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g--~~~g~~~~~~~~lg~~iGp~ 363 (418)
T TIGR00889 297 FFAYGDPE-----------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA--SAQGLFTLMCNGFGSLLGYI 363 (418)
T ss_pred HHHHcCcc-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhhHHHHHHH
Confidence 44332110 111245566777888888888888889999999999999 9999997 567899999999
Q ss_pred hhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012666 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS 250 (458)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 250 (458)
++|.+.... + .....+|+..|.+.+++.+++.++.+++.||+.+..
T Consensus 364 l~G~l~~~~--g-------~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 364 LSGVMVEKM--F-------AYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred HHHHHHHHh--c-------cccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 988743211 0 000016899999998888888888888888775443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=124.89 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
........++|.+.++.|.++.+.+.+.+...++..++.++.|+++| |+|||+.+.. +.+...++.......++.
T Consensus 234 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 308 (406)
T PRK11551 234 IVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMD----RLRPRRVVLL-IYAGILASLAALAAAPSF 308 (406)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHH-HHHHHHHHHHHHHhcCcH
Confidence 34455566788999889999999999999999999999999999999 9999887766 333344444444333332
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccc
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (458)
+.+.+...+.+++.+...+...++..|.+|+++|+ ++.++.+....+|..+++.+++.+....
T Consensus 309 ---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 309 ---------------AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRG--TGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred ---------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhh--hhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 34445556667777677788889999999999999 9999999999999999999988743211
Q ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHHhc
Q 012666 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242 (458)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (458)
.++...++......++..+..++.
T Consensus 372 --------------~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 372 --------------RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 245555665555555544444443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=121.10 Aligned_cols=178 Identities=20% Similarity=0.195 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHh
Q 012666 41 GGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (458)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (458)
+...+.++....++|.++ +++|++..+.++......++..++.++.|+++| |+|||+.++.......+.+..++.
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~~~~~~~~~~~~~~~~ 335 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD----RFGRRPFVILGSVALFVLAIPAFI 335 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777899988 567998888888778888888899999999999 999999877654433333333222
Q ss_pred hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
...+ .....+++++.+.+++.+...+....+++|.+|++.|+ ++.+.......+++.+++.+.+.
T Consensus 336 ~~~~-------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg--~~~g~~~~~~~~~g~~~p~i~g~ 400 (490)
T PRK10642 336 LINS-------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRY--SALAAAFNISVLVAGLTPTLAAW 400 (490)
T ss_pred HHhC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccch--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 01144556666777766666677788889999999999 77876444445555666666554
Q ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 012666 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD 252 (458)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 252 (458)
..... .+|+..+++..+..++..+ ..++.||++++..+
T Consensus 401 l~~~~--------------~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~~ 438 (490)
T PRK10642 401 LVEST--------------QNLMMPAYYLMVVAVIGLI-TGVTMKETANRPLK 438 (490)
T ss_pred HHHHh--------------CCchHHHHHHHHHHHHHHH-HHHHhccccCCCCC
Confidence 21110 1455555554444444443 34556998876543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=114.48 Aligned_cols=182 Identities=16% Similarity=0.077 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcC--CCcchhHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIVC 106 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~--Grr~~~~~~ 106 (458)
.+.+|.+++..+...+.-+....+.|.|+ |..|+|...+++..+.+-+++..+.++.|++|| |. |||.+..+.
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSD----klfkgrR~p~~~i 326 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSD----KLFKGRRGPMALI 326 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH----HhcccccchHHHH
Confidence 34567777777777777788889999998 778999999999999999999999999999999 64 898888877
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHH
Q 012666 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (458)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (458)
..+...++++.....++. ..++..+..++.|+...+.+-.......|..|++.-| .+.|+.+.+.
T Consensus 327 ~~~~i~~~~~~~w~~~~~-------------~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaG--tA~Gf~Glf~ 391 (448)
T COG2271 327 FMLLITASLVLYWLAPNG-------------SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAG--TATGFVGLFA 391 (448)
T ss_pred HHHHHHHHHHHHHcCCCc-------------cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhcc--chhchhhhHH
Confidence 777777777777655542 2355556666667666555556667788999999999 9999999999
Q ss_pred HH-HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhcccc
Q 012666 187 AV-GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE 245 (458)
Q Consensus 187 ~~-g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 245 (458)
.+ |...+....+..... .+|...|.+..+..+++.++.......
T Consensus 392 Yl~Ga~~a~~~~g~i~d~---------------~gW~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 392 YLIGAALAGLPLGYIADT---------------WGWDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred HHhhHHhcCCcceeeEec---------------CCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 98 777777665443221 289998988887777776666555443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-10 Score=100.22 Aligned_cols=280 Identities=14% Similarity=0.150 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccc
Q 012666 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (458)
Q Consensus 44 ~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~ 123 (458)
..+.....+++-...+++|++..+++.+.........+..++.|.++| |+||||..++.+++-. ++++.- ..++
T Consensus 47 ~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD----~~Grk~~cl~~cily~-~scl~k-~~~~ 120 (354)
T PF05631_consen 47 MAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLAD----RYGRKKACLLFCILYS-LSCLTK-HSSN 120 (354)
T ss_pred HHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchHHHHHHHHHHH-HHHHHH-hccc
Confidence 344555666666666889999999999999999999999999999999 9999999888665544 444433 4455
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHH-hhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccc
Q 012666 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALL-ADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 202 (458)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 202 (458)
+ ..++++|++.|++.+....+..++. .|.-..+.+. ............+++.+..+.+|+...
T Consensus 121 ~---------------~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~ 184 (354)
T PF05631_consen 121 Y---------------PVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVAN 184 (354)
T ss_pred c---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHH
Confidence 5 8899999999999999999887654 4553221111 011111211111222222222222100
Q ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhc
Q 012666 203 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRY 282 (458)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (458)
...+ ....+...+|.....+..++.++.....+|+..+..++ .+..+..++-.+.+++
T Consensus 185 -----~l~~----~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~-------------~~~~~~~~~a~~~i~~ 242 (354)
T PF05631_consen 185 -----VLAD----WFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS-------------SSLSGSFREAWRAILS 242 (354)
T ss_pred -----HHHH----HhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccc-------------cchHHHHHHHHHHHHc
Confidence 0000 00014466788888777777777766677765432211 0011222232333332
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHH--HHHHHHHHHHHHHHHHH-hh
Q 012666 283 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML--NSVVLGITSVLMEKLCR-KW 359 (458)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~l~d-r~ 359 (458)
+|+.+.+.+++.+.-.+...+...-++-+. . + +.... .+++. +.++.++++.+..++.. +.
T Consensus 243 -d~ril~LG~~qslFE~smy~FVflWtPaL~----~-~-------~~~~P---~GlIFssFM~a~MlGS~lf~~l~s~~~ 306 (354)
T PF05631_consen 243 -DPRILLLGLIQSLFEGSMYLFVFLWTPALD----P-D-------DEELP---LGLIFSSFMVAMMLGSSLFSRLLSKSL 306 (354)
T ss_pred -CchhHHHHHHHHHHHHHHHHheeeeeceec----C-C-------CCCCC---chHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 277787777777776655554433333231 0 0 01111 22332 45566777777766554 33
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHH
Q 012666 360 GAGFIWGISNILMALCFLAMLILY 383 (458)
Q Consensus 360 g~r~~~~~~~~~~~~~~~~~~~~~ 383 (458)
.....+...+++.++++.+..+..
T Consensus 307 ~~e~~l~~v~~~aa~~l~~pv~~~ 330 (354)
T PF05631_consen 307 RPESLLRYVFAVAAVSLAIPVVTH 330 (354)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555566665555553
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=123.89 Aligned_cols=140 Identities=10% Similarity=0.100 Sum_probs=102.5
Q ss_pred HHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHH
Q 012666 70 IIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL 149 (458)
Q Consensus 70 ~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (458)
+...+..++..++.++.|+++| |+|||++++. +.++.+++.+++.+.++. ..+++.+++.
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~D----r~GRr~~l~~-~~~lsai~~ll~~~~~s~---------------~~ll~~~~l~ 658 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMD----KIGRLRMLAG-SMVLSCISCFFLSFGNSE---------------SAMIALLCLF 658 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhCCHHHHHH-HHHHHHHHHHHHHHHccH---------------HHHHHHHHHH
Confidence 3355666788899999999999 9999998766 555555555555555443 4455556677
Q ss_pred HHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHH
Q 012666 150 DVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDV 229 (458)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (458)
+++.+..++...++++|++|.+.|+ +++|+......+|.+++|.+++.+... +....|++.+
T Consensus 659 g~~~~~~~~~~~a~~aEl~Pt~~Rg--ta~Gi~~~~~rlGaiigp~i~g~L~~~----------------~~~~pf~i~a 720 (742)
T TIGR01299 659 GGLSIAAWNALDVLTVELYPSDKRA--TAFGFLNALCKAAAVLGILIFGSFVGI----------------TKAAPILFAS 720 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHH
Confidence 7777777888899999999999999 999999999999999999997753210 3345666666
Q ss_pred HHHHHHHHHHHhccccCCC
Q 012666 230 IFIAITTCISASAAHEVPL 248 (458)
Q Consensus 230 ~~~~~~~~~~~~~~~e~~~ 248 (458)
++.++++++.+ ++||+..
T Consensus 721 ~~lll~~ll~~-~LPET~~ 738 (742)
T TIGR01299 721 AALACGGLLAL-KLPDTRG 738 (742)
T ss_pred HHHHHHHHHHH-hCCCCcc
Confidence 66666555544 5587654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-12 Score=121.76 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcC--CCcchhHH-HHHHH
Q 012666 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIV-CGAIS 110 (458)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~--Grr~~~~~-~~~~~ 110 (458)
+......+...++......++++|.++.|.+..+.+++.++..++..++.++.|+++| |. ++|+..++ .+.+.
T Consensus 244 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 244 LVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAG----LKWIRPHVQYLFSFALLF 319 (455)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccCHHHHHHHHHHHHH
Confidence 3333334444455555667888998889999999999999999999999999999999 53 33333332 22222
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
...+.+.....++. +.+++...+.|++.+...+...+++.|.+|+++++ +..++.+....+|.
T Consensus 320 ~~l~~ll~~~~~~~---------------~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~lg~ 382 (455)
T TIGR00892 320 NGLTHLLCALAGDY---------------TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFS--SAVGLVTIVECCAV 382 (455)
T ss_pred HHHHHHHHHHhchH---------------HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHh--hHHhHHHHHHHHHH
Confidence 22333333333333 55666777888888888888899999999999999 99999999999999
Q ss_pred HHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHH
Q 012666 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTC 237 (458)
Q Consensus 191 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (458)
.+|+.+++...... ++|+..|++.+++.+++.+
T Consensus 383 ~igp~i~G~l~~~~--------------g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 383 LIGPPLAGRLVDAT--------------KNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred Hccccceeeeehhc--------------CCcchHHHHhhHHHHHHHH
Confidence 99999988643211 2588888887766555544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-11 Score=114.81 Aligned_cols=184 Identities=11% Similarity=-0.011 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
++.+......+.....+.....++|++++++|.+..+.+...++..++..++.++.|++.| |+|||+..+. +..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~----r~~~~~~~~~-~~~l 279 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMAR----HQDRRKLLML-ALVL 279 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh----hccchHHHHH-HHHH
Confidence 3444444444444556667778899999889999999999999999999999999999999 9999887766 4444
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcc-cccchhhhhhHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~g 189 (458)
...+..+....+.. . ... ...+.+++.+...+.......|..+ +++++ +..+..+....++
T Consensus 280 ~~~~~~~~~~~~~~------------~--~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~ 341 (393)
T PRK09705 280 QLVGFCGFIWLPLQ------------L--PVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAG--KLVAFMQGIGFII 341 (393)
T ss_pred HHHHHHHHHHccch------------H--HHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHH
Confidence 44444433222211 0 111 1234466666666767666677775 56788 8999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (458)
..++|.+.+++.... +++...|.+.++..++..++...+.||++.++.
T Consensus 342 ~~~gp~~~G~l~~~~--------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 342 AGLAPWFSGVLRSIS--------------GNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHh--------------CCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999987743322 257777887777777777777777777765443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-11 Score=116.87 Aligned_cols=168 Identities=13% Similarity=0.047 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccc
Q 012666 49 LQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (458)
Q Consensus 49 ~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (458)
....++|.+.++ +|.+..+.+++.+...++..++.++.+++.| |.++++.+.. +.....++.+...+.++.
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~----~~~~~~~l~~-~~~~~~~~~~~~~~~~~~--- 312 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAH----SARPGLLMLL-STLGSFLAVGLFGLMPMW--- 312 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhh----ccCcchHHHH-HHHHHHHHHHHHHccchH---
Confidence 445677888876 8999999999999999999999999999999 8766666555 434444554444444443
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccc
Q 012666 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (458)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~ 207 (458)
+...+...+.|++.+...+...+++.|..|++.|+ +++++......+|..+|+.+.|.+....
T Consensus 313 ------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~l~G~l~~~~--- 375 (417)
T PRK10489 313 ------------ILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLG--RINGLWTAQNVTGDAIGAALLGGLGAMM--- 375 (417)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHHhhhHhHHHHHHHHHHHHh---
Confidence 45556666777777776677788999999999999 9999999999999999999988743322
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 012666 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253 (458)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 253 (458)
+.+..+...+++..+..++....+||.++.+.++
T Consensus 376 ------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 376 ------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred ------------chhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 6667777777776666666667777766544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-12 Score=120.66 Aligned_cols=160 Identities=17% Similarity=0.158 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhh
Q 012666 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (458)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~ 120 (458)
+...+.......+.+++.+++|.++.+.+.+.+...+...++.++.|+++| |+|||+.+.. +.+...++.....+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~ 289 (377)
T TIGR00890 215 FLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSD----KIGRQKTMSI-VFGISAVGMAAMLF 289 (377)
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhhH-HHHHHHHHHHHHHH
Confidence 333333444445667778889999989999999999999999999999999 9999888766 44445555544444
Q ss_pred ccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
.++. .....+....+.+++.+...+...+++.|.+|+++|+ ++.++.+....+|..+++.+.+..
T Consensus 290 ~~~~-------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~g~~~~~~~~g~l 354 (377)
T TIGR00890 290 IPML-------------NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSA--ANYGFLYTAKAVAGIFGGLIASHA 354 (377)
T ss_pred cccc-------------hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhh--hHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 1122334455566777777777788999999999999 999999999999999999988764
Q ss_pred cccccccccccccccccccchhhHHHHHHHHHHHH
Q 012666 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAIT 235 (458)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (458)
.... +|+..|.+.+++.+++
T Consensus 355 ~~~~---------------g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 355 LTEI---------------GFEYTFIVTGAFALTS 374 (377)
T ss_pred Hhhh---------------chhhHHHHHHHHHHHh
Confidence 3222 7888888877665544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-12 Score=123.05 Aligned_cols=159 Identities=7% Similarity=-0.028 Sum_probs=116.0
Q ss_pred HHHHHHHH----HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccc
Q 012666 52 SLLTPYVQ----ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (458)
Q Consensus 52 ~~l~~~~~----~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (458)
...|.+.. +.+.+..+.+.+.++..+...++.++.|+++| |+|||+.+.... ++..+......+.++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~~-~l~~~~~~l~~~~~~~--- 315 (420)
T PRK09528 244 QQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIIN----RIGAKNALLLAG-TIMAVRIIGSGFATGP--- 315 (420)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcchhhHHHH-HHHHHHHHHHHhcccH---
Confidence 34555543 33666678899999999999999999999999 999999876644 4444555555555554
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHH-HHHHHHHHHHHHHhhhccccccccc
Q 012666 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVGNILGYATGSFSGWFKIL 206 (458)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (458)
+.+++.+.+.+++.+........++.|.+|++.|+ ...+. .+....+|..+++.+.|.+....
T Consensus 316 ------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-- 379 (420)
T PRK09528 316 ------------LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA--TIYLVGFQFAKQLGAVFLSTLAGNLYDSI-- 379 (420)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee--eeeeehHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 55566677777777777777778999999998888 66544 56778899999999887743322
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCC
Q 012666 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 247 (458)
||+..|...+++.++..++..+..++++
T Consensus 380 -------------G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 380 -------------GFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 7899999888877776666666665543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-12 Score=101.59 Aligned_cols=137 Identities=23% Similarity=0.336 Sum_probs=106.9
Q ss_pred HhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHH
Q 012666 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151 (458)
Q Consensus 72 ~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (458)
.+...++..++.++.|++.| |+|||+.++... .....+.......++. +...+.+.+.++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d----~~g~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~ 63 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTD----RFGRKPVLLVGL-FIFVLSTAMFALSSNI---------------TVLIIARFLQGF 63 (141)
T ss_pred EEeehhHHHHHHhhHHHHHh----hcchhHHHHHHH-HHHHHHHHHHHHhccH---------------HHHHHHHHHHHH
Confidence 34556778889999999999 999999887644 4444444444444444 667777888889
Q ss_pred HhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHH
Q 012666 152 ANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIF 231 (458)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (458)
+.+...+...+++.|.+|+++|+ +..++......+|..+++.+++..... .+|++.+.+.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 126 (141)
T TIGR00880 64 GAAFALVAGAALIADIYPPEERG--VALGLMSAGIALGPLLGPPLGGVLAQF---------------LGWRAPFLFLAIL 126 (141)
T ss_pred HHHHHHHhHHHHHHHHCChhhhh--HHHHHHHHhHHHHHHHhHHhHHHHhcc---------------cchHHHHHHHHHH
Confidence 88888888999999999999999 999999999999999999987764322 2788888888877
Q ss_pred HHHHHHHHHhcccc
Q 012666 232 IAITTCISASAAHE 245 (458)
Q Consensus 232 ~~~~~~~~~~~~~e 245 (458)
..+..+...+..||
T Consensus 127 ~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 127 ALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHhhcCCC
Confidence 77777776666665
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-11 Score=113.62 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccc
Q 012666 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (458)
Q Consensus 44 ~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~ 123 (458)
.+.+.....+++.+.++.|.+ +.++..+...++..++.++.|++.| |+||||.+.. +......+.......++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (399)
T PRK05122 229 SIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLIN----RLGGLRVAIV-SLLVEILGLLLLWLAPS 301 (399)
T ss_pred HHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 345555666778887777763 4456667777888888999999999 9999887665 44445555555544444
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccc
Q 012666 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (458)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (458)
. +..++...+.|++.+...+.......|..|+++|+ ++.++.+....+|..+++.+.+.....
T Consensus 302 ~---------------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~~~ 364 (399)
T PRK05122 302 P---------------WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRG--AALGAYSVFLDLSLGITGPLAGLVASW 364 (399)
T ss_pred H---------------HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45566777888888888887778888999999999 999999999999998888877664322
Q ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccc
Q 012666 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (458)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (458)
. +|+..|++.+++.++..++..+..+
T Consensus 365 ~---------------g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 365 F---------------GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred c---------------CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 7888898888777766655554433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.5e-11 Score=113.47 Aligned_cols=160 Identities=15% Similarity=0.154 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 012666 47 WALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (458)
Q Consensus 47 ~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (458)
......+.|.+. +++|.++.+.+++.+...+...++.++.|+++| |+|||+.+.. +.......+......++.
T Consensus 232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~- 305 (393)
T PRK15011 232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAK----RLGKRFLMRV-AAVAGVCFYAGMLMAHSP- 305 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhChHHHHHH-HHHHHHHHHHHHHHHhhH-
Confidence 344456778777 568999999998888777777888999999999 9999987655 333333333333233332
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccc
Q 012666 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (458)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (458)
+..++.+.+.+++.+...+....+..|..|+ +|+ ++.++.+...++|..+++.+++.+....
T Consensus 306 --------------~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g--~~~~~~~~~~~lg~~~g~~l~G~i~~~~- 367 (393)
T PRK15011 306 --------------AILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAG--SATTLYTNTSRVGWIIAGSLAGIVAEIW- 367 (393)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 4444555555566666566667788899885 588 8999998889999999999988743322
Q ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHhcccc
Q 012666 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE 245 (458)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 245 (458)
+|+..|.+.+++.++..+.. ++.||
T Consensus 368 --------------g~~~~~~~~~~~~~~~~~~~-~~~~~ 392 (393)
T PRK15011 368 --------------NYHAVFWFALVMIIATLFCL-LRIKD 392 (393)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHH-HhhcC
Confidence 78888887776665554444 44454
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-11 Score=117.30 Aligned_cols=185 Identities=15% Similarity=0.048 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
..+..+...+.....+.....++|.|+ +++|++..+.++..+...++..++.++.|+++| |+|||+.++......
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsD----r~g~r~~~~~~~~~~ 334 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSD----LANGRRALVACIALA 334 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCchHHHHHHHH
Confidence 344445554555555556677899888 568999999999999999999999999999999 999988766533322
Q ss_pred HHHHHH-HHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH-
Q 012666 111 IAVAVL-LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV- 188 (458)
Q Consensus 111 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~- 188 (458)
.+.... .....++. ....+..++.|+..............|.+|++.|+ ++.|+.+...++
T Consensus 335 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g--~a~gi~~~~g~l~ 397 (467)
T PRK09556 335 LIIFTLGVYQHATSE---------------YMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIG--VANGIKGTFAYLF 397 (467)
T ss_pred HHHHHHHHHHhcCcH---------------HHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHH--HHHHHHHHHHHHH
Confidence 222111 11111111 33334455555433222223345677999999999 999999988886
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (458)
|..+++.+.|.+.....-... .......+|+..|.+.+++.+++.+..+
T Consensus 398 g~~~~~~~~G~i~~~~~~g~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 398 GDSFAKVGLGMIADPTKNGTP---IFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred hHHHHhhhHHHHhcccccccc---cccccccChHHHHHHHHHHHHHHHHHHH
Confidence 768888887763320000000 0000013799999888776666555444
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-11 Score=112.70 Aligned_cols=194 Identities=18% Similarity=0.107 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 30 LRKLLKVASVAGGIQF-GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
++.+....+..+.+++ +.+....|...++++.|++..++.++.....+...+...+...+.| |.|||+.++....
T Consensus 268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid----~~gRRpLll~~~~ 343 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLID----RLGRRPLLLISLS 343 (485)
T ss_pred hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcHHHHHHHH
Confidence 3344555556666666 6667777888888999999999999999999999999999999999 9999888777554
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcc-hhhHHHHhhhcccccchhhhhhHHHHHHHH
Q 012666 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQ-GPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (458)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (458)
... +..+.+......-. ....+..+..++..++..+..+... |..+-+.+|++|++.|. .++++......
T Consensus 344 ~~~-~~~~~~~~~~~l~~------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~--aa~s~~~~~~w 414 (485)
T KOG0569|consen 344 LMA-VALLLMSIALFLSN------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARS--AAQSVATAVNW 414 (485)
T ss_pred HHH-HHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchH--HHHHHHHHHHH
Confidence 444 33333333222100 0001222334555555566655553 44577899999999999 89999999988
Q ss_pred HHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 012666 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD 252 (458)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 252 (458)
+.+.+-... +|.+.+.. |- ..|.+..+.+++..+..++.+||++.+...
T Consensus 415 ~~~fiv~~~---------fp~l~~~~------g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~ 463 (485)
T KOG0569|consen 415 LSNFIVGFA---------FPPLQNVI------GP-YVFILFVIPLAIFLIYLYRYLPETKGRTPY 463 (485)
T ss_pred HHHHHHHHH---------HHHHHHHh------cc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 888776655 44444332 22 567888888888999999999999876543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-11 Score=112.45 Aligned_cols=177 Identities=15% Similarity=0.096 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
++.+......+...........+.|.+. +++|.+..+.+++.+...+...++.++.|+++| |+|||+..+.....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~ 290 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSD----LLLRRGKSLVFARK 290 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHhhcccchhHHHH
Confidence 3445555555555666677777888887 568999999999999999999999999999999 99988622221111
Q ss_pred HHHHH---HHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHH
Q 012666 110 SIAVA---VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (458)
Q Consensus 110 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (458)
....+ ........+. ....+.......+...+.+ ..+...+++.|.+|+++|+ ++.++.+...
T Consensus 291 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~ 356 (399)
T TIGR00893 291 TAIIAGLVLSLLMFATNY-----------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAG--LTGGLINSLG 356 (399)
T ss_pred HHHHHHHHHHHHHHHhcc-----------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHH--HHHHHHHHHH
Confidence 11111 1111111110 0111222222223333333 6778889999999999999 9999999999
Q ss_pred HHHHHHHHhhhccccccccccccccccccccccc-hhhHHHHHHHHHHHHHHHHH
Q 012666 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAITTCISA 240 (458)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (458)
.+|..+++.+.+.+.... + ++..|.+.+++.++..+..+
T Consensus 357 ~~g~~~~~~i~g~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 357 NLGGIVGPIVIGAIAATT---------------GSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHhhhhhhHHhhhhccCC---------------CchhHHHHHHHHHHHHHHHHHH
Confidence 999999999977643322 4 88888887777666655543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-11 Score=113.01 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
++.+......+...........+.|++.+++|.++.+.|.+.++..+...+..++.+++.| |+|+|+.+.+ +.+.
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~----r~g~~~~l~~-~~~~ 279 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQ----NCSARDLLLI-SAIA 279 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHh----hCCHHHHHHH-HHHH
Confidence 4445555555555566667777889999899999999999999999999999999999999 9999887765 6666
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHH-HHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVG 189 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g 189 (458)
..+......+.++. +.++....+.++..+...+....++.+. |+++|+ ++.++++ ...++|
T Consensus 280 ~~~~~~~~~~~~~~---------------~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~--~~q~~~~~~~~g~g 341 (382)
T TIGR00902 280 CVGRWAIIGAIEAF---------------PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIA--KLQALYNALAMGGL 341 (382)
T ss_pred HHHHHHHHHhHhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHH--HHHHHHHHHHHHHH
Confidence 77777766666665 7777888999999999999999999998 888888 8888876 567899
Q ss_pred HHHHHhhhccccc
Q 012666 190 NILGYATGSFSGW 202 (458)
Q Consensus 190 ~~ig~~~~~~~~~ 202 (458)
..+++.++|.+.+
T Consensus 342 ~~~g~~~~G~l~~ 354 (382)
T TIGR00902 342 IAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=112.05 Aligned_cols=181 Identities=15% Similarity=0.042 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcC--CCcchhHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIVCGAI 109 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~--Grr~~~~~~~~~ 109 (458)
.+......+...........++|.++ +++|++..+.+...+...++..++.++.|+++| |+ ++|+.......+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~d----r~~~~~r~~~~~~~~~ 320 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSD----KLFNGNRGPMNLIFAA 320 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHH----HhccCCccHHHHHHHH
Confidence 34444444444445556667889888 668999999999999999999999999999999 87 333333221111
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
............+.. . ........+..+++...........+.|.+|+++|+ ++.|+.+....+|
T Consensus 321 ~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g 385 (434)
T PRK11663 321 GILLSVGSLWLMPFA------------S-YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAG--AATGFVGLFAYLG 385 (434)
T ss_pred HHHHHHHHHHHcccc------------c-HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHH--hHHHHHHHHHHHH
Confidence 111111111111111 0 122222222233322222223345678999999999 9999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCC
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 247 (458)
..++|.+.+.+.... +|+..|...+++.++..+..+...+++.
T Consensus 386 ~~~~p~~~g~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 386 AALSGYPLAKVLEIW---------------HWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred HHHhcccHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999877643222 7888998888887777666655555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=111.22 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
........+.+.+.++.+.+. .++......++..+++++.|++.| |+||||.+.. +.....++.......++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 302 (392)
T PRK12382 230 VGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPD----RFGGVKVAIV-SLLVETVGLLLLWLAPTA 302 (392)
T ss_pred HHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHH----hcCCCeehHH-HHHHHHHHHHHHHHcccH
Confidence 444555667788887777654 455566677777889999999999 9999988776 444455555555444443
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccc
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (458)
+...+...+.+++.+...+...+.+.|.+|+++|+ ++.++.+....+|..+++.+.+......
T Consensus 303 ---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~ig~~~~g~l~~~~ 365 (392)
T PRK12382 303 ---------------WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRG--TALGGYAAFQDIAYGVSGPLAGMLATSF 365 (392)
T ss_pred ---------------HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556777788888877788888889999999999 9999999999999999999887743322
Q ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHHhcc
Q 012666 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA 243 (458)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (458)
+|+..|.+.+.+.++..++.++..
T Consensus 366 ---------------g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 366 ---------------GYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHhhc
Confidence 789999988877777666655443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-11 Score=114.83 Aligned_cols=149 Identities=22% Similarity=0.295 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
.+......+...........++|.+. +++|.+..+.+.+.....+...++.++.|+++| |+|||+.++..+.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~~~~~~ 296 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSD----RIGRRPVLIIFTVLAA 296 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHH
Confidence 33344444444555666677888888 678999999999999999999999999999999 9999998776554444
Q ss_pred HHHHHHH-hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHH-HHHHHHHH
Q 012666 112 AVAVLLI-GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVG 189 (458)
Q Consensus 112 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g 189 (458)
..+.... ....+ ...+.......+.+++.+...++..+++.|.+|+++|+ ++.++ .+....+|
T Consensus 297 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~g 361 (394)
T TIGR00883 297 LLAVPLLMALLDS-------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRY--TGASLAYNLAGAIF 361 (394)
T ss_pred HHHHHHHHHHhcC-------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcccee--eEeeehhHhHHHHH
Confidence 3332222 11111 01144555666677777788888999999999999999 88887 45556678
Q ss_pred HHHHHhhhccc
Q 012666 190 NILGYATGSFS 200 (458)
Q Consensus 190 ~~ig~~~~~~~ 200 (458)
..++|.+++.+
T Consensus 362 ~~~~p~~~g~l 372 (394)
T TIGR00883 362 GGFAPYIAAAL 372 (394)
T ss_pred hhHHHHHHHHH
Confidence 88888887764
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-11 Score=113.49 Aligned_cols=165 Identities=17% Similarity=0.193 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCch----hhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhh
Q 012666 45 FGWALQLSLLTPYVQELGIPHA----WASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~----~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~ 120 (458)
.......++++.+.++.+.+.. ..+.+.++..++..++.+..|+++| |+|||+.+.... ....+..+...+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~d----r~g~~~~~~~~~-~~~~~~~~~~~~ 307 (408)
T PRK09874 233 VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGD----RIGPEKILITAL-IFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchhHHHHH-HHHHHHHHHHHH
Confidence 3444455667777765443333 2455566667778888999999999 999998877643 334444444433
Q ss_pred ccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
.++. +.+.+...+.|++.+...+...+.+.|..|+++|+ +.+++......+|..+|+.+++.+
T Consensus 308 ~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~~gp~~~G~l 370 (408)
T PRK09874 308 VQTP---------------LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAG--RIFSYNQSFRDIGNVTGPLMGAAI 370 (408)
T ss_pred hccH---------------HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccce--eeehHHHHHHHHHHHhhHHHHHHH
Confidence 3333 55666777788888888888888889999999999 999999999999999999998874
Q ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccC
Q 012666 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (458)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 246 (458)
.... +|+..|.+.+++.++..++.++..+++
T Consensus 371 ~~~~---------------g~~~~f~~~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 371 SANY---------------GFRAVFLVTAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred Hhhc---------------chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3322 789999998888777776665544433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=108.85 Aligned_cols=161 Identities=23% Similarity=0.367 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcc-hhHHHHHHHHHHHHHHHh
Q 012666 42 GIQFGWALQLSLLTPYVQEL-GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRR-PFIVCGAISIAVAVLLIG 119 (458)
Q Consensus 42 ~~~~~~~~~~~~l~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~-~~~~~~~~~~~~~~~~~~ 119 (458)
...........+.|.+.++. |.++.+.+.......++..++.++.|+++| |+|||+ .+.. +.....++.....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~-~~~~~~i~~~~~~ 260 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD----RLGRRRLLLLI-GLLLAALGLLLLA 260 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHH-HHHHHHHHHHHHH
Confidence 33445555666778887654 999999999999999999999999999999 999988 6665 5455555555555
Q ss_pred hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
..++. +...+...+.+++.+...+...+++.|..|+++|+ +..+..+....+|..+++.+.+.
T Consensus 261 ~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~g~ 323 (352)
T cd06174 261 LAPSL---------------ALLLVALLLLGFGLGFAFPALLTLASELAPPEARG--TASGLFNTFGSLGGALGPLLAGL 323 (352)
T ss_pred HhccH---------------HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 66777888889999999999999999999999999 99999999999999999999877
Q ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHH
Q 012666 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239 (458)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (458)
.... .+|+..+.+.+++.++..++.
T Consensus 324 l~~~---------------~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 324 LLDT---------------GGYGGVFLILAALALLAALLL 348 (352)
T ss_pred Hhcc---------------cCcchHHHHHHHHHHHHHHHh
Confidence 4322 278888988888777665554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-11 Score=115.96 Aligned_cols=173 Identities=9% Similarity=-0.033 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 47 ~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
......+.|.+.++.|.+..+.++......++..++.++.|+++| |+|||+.+... .....++...+.+......
T Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 374 (481)
T TIGR00879 300 INAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD----RFGRRPLLLIG-AAGMAICLFVLGILGASFV 374 (481)
T ss_pred CeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHH-HHHHHHHHHHHHHHhhccc
Confidence 344556777888899999988888888899999999999999999 99999987764 3444444443331110000
Q ss_pred ccCCCCCC--CchhHHHHHHHHHHHHHHhh-hcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccc
Q 012666 127 LLGDRGDF--RPRAIAVFVFGFWILDVANN-MTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (458)
Q Consensus 127 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (458)
.. .... ...+....+...+.+ ...+....++.|.+|+++|+ ++.++.....++|..+++.+.+.....
T Consensus 375 ------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~lg~~i~~~~~~~~~~~ 445 (481)
T TIGR00879 375 ------TGSSKSSG-NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP--KGISIAVAANWLANFIVGFLFPTMLES 445 (481)
T ss_pred ------CCcccchh-HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0001 222222222222222 23355567789999999999 999999999999999999886653221
Q ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCC
Q 012666 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPL 248 (458)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 248 (458)
.+|++.|++.+++.++..++..++.||+++
T Consensus 446 ---------------~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 446 ---------------IGVGGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred ---------------cCccceehhHHHHHHHHHHHHheecccCCC
Confidence 178888888888877777777777777653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=110.75 Aligned_cols=171 Identities=13% Similarity=0.026 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
.+......+...........++|.|. +++|+|..+.+.+.+...++..++.++.|+++| |++||+.++.... ..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d----r~~~~~~l~~~~~-~~ 281 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVR----FFDLQRILTVLAG-LA 281 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHH----HhchhhHHHHHHH-HH
Confidence 34444444444445566678899998 568999999999999999999999999999999 9999988776443 33
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (458)
.+........++. ....+...+.|++.+..++...++..|..|+ +++ +..+.......+|..
T Consensus 282 ~~~~~~~~~~~~~---------------~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~--~~~g~~~~~~~~g~~ 343 (394)
T PRK03699 282 LVLMYLFVNTDDP---------------SHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASP--KLVNFILTCGTIGTM 343 (394)
T ss_pred HHHHHHHHHcCCc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCH--HHHHHHHHhhhHHHH
Confidence 3434444333333 3344455666777777777777777887764 456 677888888899999
Q ss_pred HHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHh
Q 012666 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 192 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (458)
++|.+.+.+.... +++..++..+++..++.+.+..
T Consensus 344 i~p~~~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 344 LTFVVTSPIVAHF---------------GLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHHHHHHh---------------CchhhhhhhHHHHHHHHHHHHH
Confidence 9999987743322 7777888777776666554433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-10 Score=108.01 Aligned_cols=160 Identities=17% Similarity=0.137 Sum_probs=115.1
Q ss_pred HHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 48 ALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 48 ~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
.....+++++. ++.|.+..+.+++.+...++..++.++.|+++| |+|||+. .....+............++.
T Consensus 222 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~d----r~~~~~~-~~~~~~~~~~~~~l~~~~~~~-- 294 (390)
T PRK03545 222 FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGN----RHPSGFL-LIAIALLLVCLLLLLPAANSE-- 294 (390)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhh----ccchhHH-HHHHHHHHHHHHHHHHHhchH--
Confidence 33445667766 457999999999999999999999999999999 9988754 332333222222222233332
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccc
Q 012666 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (458)
+.+.+...+.|++.....+...+.+.|..| ++|+ +++++......+|..+|+.++|......
T Consensus 295 -------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~--~~~g~~~~~~~~g~~~G~~~~G~~~~~~-- 356 (390)
T PRK03545 295 -------------WHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATD--VAMALFSGIFNIGIGAGALLGNQVSLHL-- 356 (390)
T ss_pred -------------HHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 455566667777776666667778888866 5788 8999999999999999999988744333
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhcccc
Q 012666 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE 245 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 245 (458)
+++..|+..+.+.++..++.....+.
T Consensus 357 -------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
T PRK03545 357 -------------GLSSIGYVGAALALAALVWSILIFRR 382 (390)
T ss_pred -------------ChhHHHHHHHHHHHHHHHHHHHHccc
Confidence 88889998888887777776666553
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=109.66 Aligned_cols=158 Identities=14% Similarity=0.185 Sum_probs=112.6
Q ss_pred HHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 48 ALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 48 ~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
......+|.+. +++|.++.+.+++.........++.++.|+++| |+|||+.+... .+............++.
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~~-~~~~~~~~~~~~~~~~~-- 288 (375)
T TIGR00899 216 ILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIK----RFGKRRLMLLA-ALAGVAFYTGLAADNSL-- 288 (375)
T ss_pred HHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchhHHHHH-HHHHHHHHHHHHHHHHH--
Confidence 33445667776 678999999998888777777788899999999 99999877663 33333333333333332
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccc
Q 012666 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (458)
+...+...+.+++.+...+....+..|..|+ +++ +++++.+....+|..+++.+++......
T Consensus 289 -------------~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~g~~~g~~~~g~~~~~~-- 350 (375)
T TIGR00899 289 -------------WALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAG--AATTLYTNTGRVGWIIAGSVGGILAERW-- 350 (375)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 4455566677777777777778888998875 567 7899999999999999999987643322
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhccc
Q 012666 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (458)
+++..|++.+++.++..+.. .++|
T Consensus 351 -------------g~~~~~~~~~~~~~~~~~~~-~~~~ 374 (375)
T TIGR00899 351 -------------SYHAVYWFAIVMLIVALFCL-LLIK 374 (375)
T ss_pred -------------cchhHHHHHHHHHHHHHHHH-heec
Confidence 78888888887766555544 3344
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-08 Score=91.19 Aligned_cols=337 Identities=12% Similarity=0.124 Sum_probs=194.6
Q ss_pred HHHHHHHHH--HhCCCchhhH-HHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccc
Q 012666 51 LSLLTPYVQ--ELGIPHAWAS-IIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (458)
Q Consensus 51 ~~~l~~~~~--~~g~s~~~~~-~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (458)
-+++.+|+. +.|++..++. -+.-+..-.+.....+...+.| ..|.|+.+++ +.+..++...++.+.++.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd----~l~Ykpviil-~~~~~i~t~~lll~~~sv--- 94 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTD----YLRYKPVIIL-QALSYIITWLLLLFGTSV--- 94 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HhhhhHHHHH-HHHHHHHHHHHHHHHCcH---
Confidence 356777773 3788888764 3333334445566677788999 9977666555 555566666666677776
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccc
Q 012666 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (458)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~ 207 (458)
..+-+..+..|++.+. ..+..+++--..|+++-. ++.+......-+|..++.++|..+.....
T Consensus 95 ------------~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq--~vts~~raa~l~g~~~s~~lgQllvs~~~-- 157 (412)
T PF01770_consen 95 ------------LAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQ--KVTSYTRAATLVGRFISSLLGQLLVSFGG-- 157 (412)
T ss_pred ------------HHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 6677777777777665 566778888888877777 88888888888888888888776322110
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCC----CC---------CCCC-CC-ccc-------cccc
Q 012666 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS----HD---------QSAP-FS-EEG-------HEQS 265 (458)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~----~~---------~~~~-~~-~~~-------~~~~ 265 (458)
.++.....+......++.++. +++|..++.. .. +.+. ++ +++ ++..
T Consensus 158 -----------~sy~~L~~isl~~~~~a~~~~-~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (412)
T PF01770_consen 158 -----------VSYFQLNYISLASVSLALLIA-LFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTE 225 (412)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHH-HHcCCCCcccceeccCccccccccccccccccccccccccccCcccc
Confidence 155555566555444444444 3444433210 00 0000 00 000 0000
Q ss_pred cchHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHH
Q 012666 266 SDVHEA----FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLN 341 (458)
Q Consensus 266 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
....+. ..+++++..++ +.++.-.+-..+...++.-+..|...... ++ . ++.....|+.+. -...
T Consensus 226 ~~~~~~~l~~l~~~~~~~y~~--~~ll~WSlWWa~atcgy~qv~nYvQ~LW~-~v-~-~~~~~~vYNG~V------eA~~ 294 (412)
T PF01770_consen 226 SSSRKSVLRLLWKDFKSCYSN--PRLLLWSLWWAFATCGYYQVINYVQSLWD-TV-P-PSDNESVYNGAV------EAAS 294 (412)
T ss_pred cchHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhHHHHHHHHHHHHHH-hc-C-CCCCCcccchHH------HHHH
Confidence 111122 23444444455 44444444334444444444444443332 22 1 111222333322 2223
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhHH--HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHH
Q 012666 342 SVVLGITSVLMEKLCRKWGAGFIWG--ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (458)
Q Consensus 342 ~~~~~~~~~~~g~l~dr~g~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (458)
.+.+.++++..|++..++.+..-+. ...++.+.+++++...+ +.|...+..++++..+...
T Consensus 295 tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~-----------------~Iwv~Y~~yIif~~~y~fl 357 (412)
T PF01770_consen 295 TLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG-----------------NIWVCYAGYIIFRSLYMFL 357 (412)
T ss_pred HHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHHH
Confidence 4556667788888866665543333 33444555555665554 6888899999999888888
Q ss_pred hhchhHhHHhhhcccccccchhhhHHHHHHHhhhh
Q 012666 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454 (458)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 454 (458)
.++...-++..... +.-|..+|+.++...+=|.
T Consensus 358 iTiA~~qIA~~l~~--e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 358 ITIASFQIAKNLSE--ERYALVFGINTFVALVLQT 390 (412)
T ss_pred HHHHHHHHHHhccc--cceeeeeeeHHHHHHHHHH
Confidence 88777777777776 7889999987776655444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-10 Score=107.56 Aligned_cols=176 Identities=16% Similarity=0.115 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (458)
.+......+...........+.|.+.+++|.+..+.+.+.+...++..++.++.|+++| |+|||+.....+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d----r~~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGD----KLGWMNTVRWFGGVGCG 299 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchhHHHHHHHHHHH
Confidence 34444444444455566677889999999999999999888899999999999999999 99998876432322222
Q ss_pred HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Q 012666 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (458)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (458)
++.......+.. . ....+...+...+.|++.+... +....+.|..| ++|+ ++.|+.+....+|..+
T Consensus 300 ~~~~~l~~~~~~--------~--~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~-~~~g--~~~g~~~~~~~lg~~~ 365 (402)
T TIGR00897 300 IFTLALYYIPQH--------F--GHSFAVALIIAIALGIFLAGYV-PLAAVFPTLAP-KHKG--AAMSVLNLSAGLSAFL 365 (402)
T ss_pred HHHHHHHHHHHc--------c--CCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCc-chhH--HHHHHHHHHHHHHHHH
Confidence 222222221110 0 0112444455556666666543 34556677655 6899 9999999999999999
Q ss_pred HHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHh
Q 012666 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (458)
+|.+++...... +++..+++.+++.++..+..++
T Consensus 366 gp~i~g~l~~~~---------------g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 366 APAIAVLFIGFF---------------GAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHhhc---------------chHHHHHHHHHHHHHHHHHHHH
Confidence 999987743322 7888888888776666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-10 Score=111.87 Aligned_cols=132 Identities=13% Similarity=0.179 Sum_probs=94.8
Q ss_pred HHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccccc
Q 012666 50 QLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (458)
Q Consensus 50 ~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (458)
...++|.++ +++|.+..+.+++.+...++..++.++.|+++| |+|||+.++... ....+..+......+.
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d----r~g~~~~~~~~~-~~~~~~~~~~~~~~~~---- 364 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD----WLGTRKAYVCSL-LISQLLIIPVFAIGGA---- 364 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH-HHHHHHHHHHhhcccc----
Confidence 346788888 589999999999999999999999999999999 999998877643 3333332222221111
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccc
Q 012666 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG 201 (458)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 201 (458)
..+......++.+.......+...+++.|.+|+++|+ +++++......+|..+|+.+++.+.
T Consensus 365 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~lgp~l~g~l~ 426 (496)
T PRK03893 365 ---------NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRA--AGLGFTYNVGALGGALAPILGALIA 426 (496)
T ss_pred ---------HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhh--cccchhhhhhhHHHHHHHHHHHHHh
Confidence 1122223333333333334556678899999999999 9999999999999999999988743
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.3e-10 Score=107.68 Aligned_cols=174 Identities=14% Similarity=0.116 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHh
Q 012666 41 GGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (458)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (458)
+...+..+....+.|.|. +++|++......+..+..+...++.++.|+++| |+||||.++.... ...++.....
T Consensus 260 ~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~D----r~grr~~~~~~~~-~~~~~~~~~~ 334 (438)
T PRK09952 260 LCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLAD----RFGRRRVYITGAL-IGTLSAFPFF 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHHH-HHHHHHHHHH
Confidence 333455566667888887 568888876655555666777888899999999 9999998776433 3333322221
Q ss_pred hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHH-HHHHHHHHHHHhhhc
Q 012666 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVGNILGYATGS 198 (458)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g~~ig~~~~~ 198 (458)
..... ....+.+++...+.+++.+...+..++++.|.+|.+.|+ .+.++.. ....+|+.++|.+.+
T Consensus 335 ~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~--tg~g~~~~~~~~lgg~~~p~i~g 401 (438)
T PRK09952 335 MALEA-----------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRY--SGAGVGYQVASVVGGGFTPFIAA 401 (438)
T ss_pred HHHHc-----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhH--HHHhHHHHHHHHHHHHHHHHHHH
Confidence 11000 001133334445556777777778889999999999998 6666644 334578888887766
Q ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccC
Q 012666 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (458)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 246 (458)
.+.... .++|...+.+.+++.++..+.. +.+||+
T Consensus 402 ~l~~~~-------------~~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 402 ALVTYF-------------GGSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHHHhc-------------CCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 532110 0246777776666665555444 445654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.6e-10 Score=109.90 Aligned_cols=176 Identities=15% Similarity=0.052 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcC--CCcchhHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIVCGAI 109 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~--Grr~~~~~~~~~ 109 (458)
++......+......+....++|.|+++ .|++..+.+.+..+..++..++.++.|+++| |+ |||+...+....
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~d----r~~~~r~~~~~~~~~~ 330 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFRGNRGATGVFFMT 330 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHccCCcchHHHHHHH
Confidence 4444444444444555667789999865 7899889998888888888999999999999 88 455433322222
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
+..++.......+.. ..+...+...+.+.+.........++..|.+|+++|+ +++|+.+....+|
T Consensus 331 l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g 395 (452)
T PRK11273 331 LVTIATIVYWLNPAG-------------NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLG 395 (452)
T ss_pred HHHHHHHHHHHhccc-------------ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhh--hHHHHHHHHHHHH
Confidence 222222222121110 0022223333333332222223345678999999999 9999998888887
Q ss_pred HHH-HHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhc
Q 012666 190 NIL-GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242 (458)
Q Consensus 190 ~~i-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (458)
..+ ++.+.+...... +|+..|++.++.++++++....+
T Consensus 396 ~~~~g~~v~g~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 396 GSVAASAIVGYTVDFF---------------GWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHhhhhhHHHHHHHh---------------cchHHHHHHHHHHHHHHHHHHHH
Confidence 654 677766533222 78888888877666665555433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-10 Score=105.60 Aligned_cols=153 Identities=17% Similarity=0.139 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 012666 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (458)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (458)
.+.....++|.+.++.|.++.+.+.+.+...+...+++++.|+++| |+|+|+.+.. +.....++..... ..
T Consensus 215 ~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~~~~~~l~~-~~~~~~~~~~~~~--~~-- 285 (381)
T PRK03633 215 VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLAD----RFGRLLVLRV-QVFVVILGSIAML--SQ-- 285 (381)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHH----HcCcHHHHHH-HHHHHHHHHHHHh--hh--
Confidence 4445556789898888999999999999999999999999999999 9999887665 3333334333321 11
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccc
Q 012666 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (458)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (458)
........+.+++.....+...+.+.|..|+++++ ...+......++|..+||.++|...+..
T Consensus 286 --------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~igp~~~G~l~~~~- 348 (381)
T PRK03633 286 --------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELV--AMNQALLLSYTVGSLLGPSFTAMLMQNY- 348 (381)
T ss_pred --------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 11223444556555566788888899999888877 6777788889999999999988753332
Q ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHH
Q 012666 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCI 238 (458)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (458)
++++.|.+.+.+.++..+.
T Consensus 349 --------------g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 349 --------------SDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred --------------CccHHHHHHHHHHHHHHHH
Confidence 6788888877666544433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-10 Score=103.08 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
++......+....+.+...+|+.+++ +..|++.+.++++...+.++..++..+.|+++| | +.|+.+.....+ .
T Consensus 213 v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~d----r-~~~~~l~~~~~l-~ 286 (394)
T COG2814 213 VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD----R-GPRRALIAALLL-L 286 (394)
T ss_pred HHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcc----c-cchhHHHHHHHH-H
Confidence 33333333333445556667777776 568999999999999999999999999999999 9 777777664344 3
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (458)
+.....+.+..+. .+..++..++.++..............+ ..+|.+. .+.++.....++|..
T Consensus 287 a~~~l~l~~~~~~--------------~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~--~a~sl~~aa~nlgia 349 (394)
T COG2814 287 ALALLALTFTGAS--------------PALALALLFLWGFAFSPALQGLQTRLAR-LAPDAAD--LAGSLNVAAFNLGIA 349 (394)
T ss_pred HHHHHHHHHhcch--------------HHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchH--HHHHHHHHHHHHHHH
Confidence 4444444333332 1444455555666655555555555556 3357777 899999999999999
Q ss_pred HHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccc
Q 012666 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (458)
Q Consensus 192 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (458)
+|..+||...... ++....+..+++.+++.++.....+
T Consensus 350 ~GA~lGG~v~~~~---------------g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 350 LGAALGGLVLDAL---------------GYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHhh---------------chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999854433 8888899888888777776655443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=111.90 Aligned_cols=175 Identities=15% Similarity=0.068 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 47 ~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
++....+.|.+.++.|.+.....+......+...++.++.|+++| |+|||+.++.+.. ...++.+.+......
T Consensus 287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~g~r~~~i~~~~-~~~v~~~~l~~~~~~-- 359 (479)
T PRK10077 287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRKPLQIIGAL-GMAIGMFSLGTAFYT-- 359 (479)
T ss_pred hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH----HhcChHHHHHhHH-HHHHHHHHHHHHHhc--
Confidence 334455678888889998877777777788888899999999999 9999988776444 444444443322110
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhhc-chhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccc
Q 012666 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMT-QGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (458)
.. .. ........+.+++.+.. .+...+++.|.+|+++|+ ++.++......+|..+++.+.+.....
T Consensus 360 -------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~g~~~~~~~~g~~~~~~~~p~~~~~-- 426 (479)
T PRK10077 360 -------QA-PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWIANYFVSWTFPMMDKN-- 426 (479)
T ss_pred -------Cc-cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH--HHHHHHHHHHHHHHHHHHHHhHHHHhc--
Confidence 00 01 12222333344444432 355689999999999999 999999999999999887664321100
Q ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCC
Q 012666 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPL 248 (458)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 248 (458)
++..+ ..+++..|++.+++.+++.++.+++.||+++
T Consensus 427 -~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 427 -SWLVA------HFHNGFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred -cchhh------hccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 01111 1267778888887777777777777777654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-09 Score=91.91 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
.|.+...++.....+.-....-|.+. +.+|+|+...+.+.+......++.+|+.|.++| |+|++-.++..+.+..
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~D----k~G~n~~wv~~a~~~t 341 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISD----KYGFNLWWVASACILT 341 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHh----hhcceehhHHHHHHHH
Confidence 33333333444344444444555555 789999999999999888999999999999999 9999988888777776
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (458)
..+-..+.++. +--.++..++|...+......+..++-+.|+++.| ++.|..+...++|-.
T Consensus 342 l~~H~~l~Ft~-----------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLG--Taygf~qsIqNLgla 402 (459)
T KOG4686|consen 342 LLGHSGLFFTF-----------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLG--TAYGFIQSIQNLGLA 402 (459)
T ss_pred HHHhhhHHhhh-----------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhc--chHHHHHHHHhhhhh
Confidence 66655554421 22235666777777777667788889999999999 999999999999999
Q ss_pred HHHhhhcccc
Q 012666 192 LGYATGSFSG 201 (458)
Q Consensus 192 ig~~~~~~~~ 201 (458)
+.+.+++++.
T Consensus 403 ~i~Iiag~i~ 412 (459)
T KOG4686|consen 403 FIPIIAGFIA 412 (459)
T ss_pred HHhhhhheee
Confidence 9999988743
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-08 Score=89.24 Aligned_cols=382 Identities=13% Similarity=0.065 Sum_probs=195.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceecccc-CCcCCCcchhHH
Q 012666 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRC-TSRFGRRRPFIV 105 (458)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~-~~r~Grr~~~~~ 105 (458)
+..++++..+.+.+..++.-.+... .+|.+++.-|.|-++.+....++. -...-+++..+.|.. ..|+||||.+++
T Consensus 27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceee
Confidence 3445566677777777766666665 788888888888887776554432 122344556666632 348999999987
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHH
Q 012666 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (458)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (458)
-+... ++..+..++......+++++.... ........+++.+..+....+...+.-.+..+++-+ .+......+
T Consensus 104 p~q~l--lG~~mllLs~~v~~~~g~ng~~p~--v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lg--yaST~q~Vg 177 (510)
T KOG3574|consen 104 PCQYL--LGLFMLLLSYLVDRGLGGNGGLPN--VVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLG--YASTCQSVG 177 (510)
T ss_pred ehHHH--HHHHHHHHhhCCCcccccCCCCcc--hHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcC--chhHHHHHH
Confidence 54433 333333344444333333332222 223334455666778888888899999999999998 877777777
Q ss_pred HHHHHHHHHhhhccccccccc-cccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccc
Q 012666 186 MAVGNILGYATGSFSGWFKIL-PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (458)
Q Consensus 186 ~~~g~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (458)
...|.+++..+--.+....+- .++.....+..........++.+.+..+...+..+.-+|++....++
T Consensus 178 ~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e----------- 246 (510)
T KOG3574|consen 178 QTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEE----------- 246 (510)
T ss_pred HhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh-----------
Confidence 777777776552221110000 00000000000012233344455555555555555555544331111
Q ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHH
Q 012666 265 SSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
.+...+...+-+++.++- |..+.++......-+++.+-....+.-+ .+.|....-+++. .+.
T Consensus 247 ~~~~i~~~yk~l~~vLkl--k~v~~la~i~lt~K~gf~a~da~t~LkL--------------le~Gv~ke~Lal~--~v~ 308 (510)
T KOG3574|consen 247 LELGIHESYKLLRDVLKL--KSVRWLAGILLTGKLGFQAADALTSLKL--------------LEHGVPKEELALI--AVP 308 (510)
T ss_pred hhcCHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHhhhhhhccchHH--------------HHcCCChhHheee--eee
Confidence 111233444555566666 6666666665555555444433322222 1222222222222 233
Q ss_pred HHHHHHHHHHHHHhh--cChhhHHH--H----HHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHH
Q 012666 345 LGITSVLMEKLCRKW--GAGFIWGI--S----NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 416 (458)
Q Consensus 345 ~~~~~~~~g~l~dr~--g~r~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (458)
.++..++.+.+..|+ |+|++... + .....+..++.+..+.+.. .+|.. |. ......+....+.+...
T Consensus 309 ~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~---~~G~~-~~-~~~il~i~~y~~~~~~~ 383 (510)
T KOG3574|consen 309 LVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGH---SDGTF-PR-GYYILLITSYAFHQVFV 383 (510)
T ss_pred hhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhccccc---CCCce-ee-chHHHHHHHHHHhhhHH
Confidence 445555556655555 33433211 1 1112222222222221111 00000 11 01222222334444444
Q ss_pred HHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhh
Q 012666 417 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQ 453 (458)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 453 (458)
-..+....+..+++.|+ .-.|+++.+.|...++|.
T Consensus 384 ts~fv~~maf~aqisdp--~iggTymTlLNTLsnLGg 418 (510)
T KOG3574|consen 384 TSMFVSGMAFHAQISDP--AIGGTYMTLLNTLSNLGG 418 (510)
T ss_pred HHHHHHHHHHHhhcCCc--ccCccHHHHHHHHHHhcC
Confidence 44444555677788888 889999999999988875
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-09 Score=102.70 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=125.7
Q ss_pred HHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 48 ALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 48 ~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
......+|.+. +.+|.++...|++.+...++..++..+.+++.+ |+++++.+.. +.+...++++.+++.++.
T Consensus 235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~----~~~~~~lv~~-~~~~~a~~~~~lal~~~~-- 307 (524)
T PF05977_consen 235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRR----RLSSRRLVLL-ASLLFALALLLLALSPSF-- 307 (524)
T ss_pred hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCcchhhHH-HHHHHHHHHHHHhcchHH--
Confidence 33445678777 668999999999999999999999999999988 8888776655 555566666666676665
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccc
Q 012666 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (458)
+...+..++.|++.........+.+.+..|++.|| ++++++.+....+..+|..+.|.+....
T Consensus 308 -------------~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~G--Rv~si~~~~~~g~~~lGsll~G~la~~~-- 370 (524)
T PF05977_consen 308 -------------WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRG--RVFSIYQMVFFGGMPLGSLLWGFLADHF-- 370 (524)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 67777788888888888888899999999999999 9999999999989999999887743332
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHH-hccccCC
Q 012666 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISA-SAAHEVP 247 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~ 247 (458)
+.+..+.+.++..++..++.. ..+++.+
T Consensus 371 -------------g~~~al~~a~~~lll~~~~~~~~~l~~~~ 399 (524)
T PF05977_consen 371 -------------GVRTALLIAGAALLLSALIALRFPLRQGE 399 (524)
T ss_pred -------------CHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 677777777765555554443 3344433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-10 Score=101.01 Aligned_cols=184 Identities=19% Similarity=0.153 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
.++.|.++..++...-++-....++|.|+ ++++.++.+.|.+.....+.+.+..|.+|+++| |+|.+|..+....
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD----R~Gg~rv~~~~f~ 292 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSD----RIGGRRVTLAVFV 292 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhh----hccchhHHHHHHH
Confidence 45566666665554335555667888887 779999999999999999999999999999999 9999998887555
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
.+.+...+.. ..++. ..........+.......+..+........+++.++|+ +-+ .+.|+.+...++
T Consensus 293 ~~~~~~~~l~-~~~~~--------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G--~v~G~vga~G~l 360 (417)
T COG2223 293 GMALAAALLS-LFLTG--------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETG--AVTGIVGAIGGL 360 (417)
T ss_pred HHHHHHHHHH-ccccc--------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhh--HHHHHHHHhccc
Confidence 5444444444 33221 11123335555555556677777777888888888885 445 688888888888
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhcc
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA 243 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (458)
|...-|..-+..... .+.+...|++...+.+++.++.+...
T Consensus 361 GGf~lp~~~g~~~~~--------------tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 361 GGFFLPLAFGVSLDL--------------TGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred cccchhHHHHHHHHh--------------cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876655553332111 12588888888888777777665543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.8e-10 Score=109.59 Aligned_cols=156 Identities=15% Similarity=0.093 Sum_probs=98.5
Q ss_pred HHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCc-----c-hhHHHHHHHHHHHHHHHhh
Q 012666 48 ALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRR-----R-PFIVCGAISIAVAVLLIGL 120 (458)
Q Consensus 48 ~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr-----~-~~~~~~~~~~~~~~~~~~~ 120 (458)
.....++|.++ +++|++..+.+.+.++..++..++.++.|+++| |+||| | ........+..+.......
T Consensus 269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsD----r~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~ 344 (476)
T PLN00028 269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSD----VAARRFGMRGRLWALWIVQTLGGVFCIWLGR 344 (476)
T ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHhcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence 34455678776 567999999999999999999999999999999 66654 1 2222222222222222222
Q ss_pred ccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
.++. +..++...+.+++.+...+...+++.|..| +.++ .+.|+.+....+|..+++.+.+..
T Consensus 345 ~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~g~lg~~i~~~l~~~~ 406 (476)
T PLN00028 345 ANSL---------------GAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLG--VISGLTGAGGNVGAVLTQLLFFTG 406 (476)
T ss_pred cchH---------------HHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhch--hhhhhhhccccHHHHHHHHHHHhc
Confidence 2221 333344444555555555556666777654 6788 889988887778887777653210
Q ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHHHh
Q 012666 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (458)
...+|+..|++.+++.+++.++.++
T Consensus 407 ----------------~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 407 ----------------SSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred ----------------CCccHhhHHHHHHHHHHHHHHHHHh
Confidence 0126888898888777666555543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-09 Score=105.89 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHH
Q 012666 36 VASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (458)
.....+...+.......+.|.|.+ .+|.++.+.+++.....++..+..++.|+++| |+|||+.+..+..+..+..
T Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----r~g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 266 GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVN----RFGYRRVLVATTLGLALVS 341 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHHHH
Confidence 333334444555555667788876 48999999999988888888888899999999 9999998876444433333
Q ss_pred HHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHH
Q 012666 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (458)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (458)
.+.. +.+.. ...+...+...+.|++.+...+....+..+..|++.++ .++++.+....+|..+|+
T Consensus 342 ~~~~-~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~ig~ 406 (471)
T PRK10504 342 LLFM-LVALL------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLAS--SGNSLLSMIMQLSMSIGV 406 (471)
T ss_pred HHHH-hcccc------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhcc--chHHHHHHHHHHHHHHHH
Confidence 3332 22111 11133334455667788888888889999999999999 999999999999999999
Q ss_pred hhhcc
Q 012666 195 ATGSF 199 (458)
Q Consensus 195 ~~~~~ 199 (458)
.+++.
T Consensus 407 ~i~g~ 411 (471)
T PRK10504 407 TIAGL 411 (471)
T ss_pred HHHHH
Confidence 99887
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.2e-10 Score=106.79 Aligned_cols=134 Identities=16% Similarity=0.263 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 012666 47 WALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (458)
Q Consensus 47 ~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (458)
......++|.+. +++|.+..+.+++.+...++..++.++.|+++| |+|||+.+..................++.
T Consensus 254 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~d----r~g~~~~~~~~~~~~~~~~~~~~~~~~~~- 328 (405)
T TIGR00891 254 SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGD----WLGRRKAYVCSLLAGQLLIIPVFAIGANV- 328 (405)
T ss_pred HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchhhhHHHHHHHHHHHHHHHHhCCch-
Confidence 334455677776 568999999999999999999999999999999 99999987764433222222222222221
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccc
Q 012666 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG 201 (458)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 201 (458)
+.+.+...+.++..+...+...+++.|.+|+++|+ +++|+.+....+|..+++.+.+.+.
T Consensus 329 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~g~~~g~~~~g~l~ 388 (405)
T TIGR00891 329 --------------AVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA--AGLGFTYQLGNLGGALAPIIGALLA 388 (405)
T ss_pred --------------HHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhH--HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666666777888999999999999 9999999999999999999988743
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-09 Score=103.79 Aligned_cols=186 Identities=14% Similarity=0.115 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCc--chhHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRR--RPFIVCG 107 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr--~~~~~~~ 107 (458)
+.+..+.+..+...-+.+....+...|. +++|++..+...+..+..+...+++.++|++.| |+|.| ++++...
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~----r~g~k~~~~l~~~l 356 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQD----RFGPKTKRTLLISL 356 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHHHHHH
Confidence 3445555555655556666777777777 589999999999999999999999999999999 99998 6665544
Q ss_pred HHHHHHHHHHHh-hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHH
Q 012666 108 AISIAVAVLLIG-LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (458)
Q Consensus 108 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (458)
....+++...+. +.++. ......+.+.+...+.|+..+..++...++.+|+.|+++++ ..+|++.+..
T Consensus 357 ~~~~~i~~~g~~G~~~~~---------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~--efFgly~i~g 425 (477)
T PF11700_consen 357 ILWIIIPLYGLFGFWPSF---------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREA--EFFGLYAITG 425 (477)
T ss_pred HHHHHHHHHHHHHhhhcc---------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhh--HHHHHHHHHH
Confidence 333233333221 11111 00112245666677889999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccC
Q 012666 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (458)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 246 (458)
-....+||.+-+...+.. ++.|..+....++.++..++. +.++++
T Consensus 426 k~ss~lGPll~g~i~~~t--------------g~~r~g~~~l~~lf~~gl~ll-~~v~~~ 470 (477)
T PF11700_consen 426 KASSWLGPLLFGLITDAT--------------GSQRYGFLFLLVLFLIGLILL-FFVDVE 470 (477)
T ss_pred HHHHHHHHHHHHHHHHHh--------------CCchhHHHHHHHHHHHHHHHH-hhccch
Confidence 999999999977743322 357777777776666555544 445443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.9e-10 Score=108.33 Aligned_cols=185 Identities=11% Similarity=-0.016 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhHH------------HHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH
Q 012666 42 GIQFGWALQLSLLTPYVQELGIPHAWASI------------IWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 42 ~~~~~~~~~~~~l~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
...+.++....+.|.++++.|++....+. ...+..++..++.++.++++| |+|||+.++....+
T Consensus 299 ~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d----r~gRR~~l~~~~~~ 374 (502)
T TIGR00887 299 LLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVD----IIGRKPIQLMGFFI 374 (502)
T ss_pred HHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhcchhHHHHHHHH
Confidence 33344444555678888888887543211 122333445567778899999 99999887764433
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
..++..++....+. .. .. ...........++.....+..+.+..|.+|++.|+ ++.++.+....+|
T Consensus 375 -~~~~~~~l~~~~~~--------~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~--~~~g~~~~~~~~~ 440 (502)
T TIGR00887 375 -LTVLFFVLGFAYNH--------LS-TH--GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRS--TAHGISAASGKAG 440 (502)
T ss_pred -HHHHHHHHHHHHHh--------cc-hh--HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHH--HHHHHHHHHhhhH
Confidence 33333333222110 00 00 11111111111222233455677889999999999 9999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS 250 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 250 (458)
.++++.+.+...... -| ++ +.....++...|++.+++.++..+. .+++||++.+.
T Consensus 441 ~~~~~~~~~~l~~~~-~~---~~-~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~ 495 (502)
T TIGR00887 441 AIIGQFGFLYLAQHG-DP---TK-GYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKS 495 (502)
T ss_pred HHHHHHHhhhhhccc-cc---cc-cccccccchHHHHHHHHHHHHHHHH-heEeccCCCCC
Confidence 999998865421100 00 00 0000013455677777766665554 46779876644
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=104.51 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcc
Q 012666 44 QFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (458)
Q Consensus 44 ~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (458)
...++....++|.++ +++|.+..+.+...++..+...++.++.|+++| |+|||+.+++...+..+..........
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~D----r~grr~~~~~~~~~~~~~~~~~~~~~~ 331 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSD----KIGRRTSMLCFGSLAALFTVPILSALQ 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777899987 568999888888888888888888999999999 999998876644433222221211111
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH-HHHHHHhhhc
Q 012666 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV-GNILGYATGS 198 (458)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-g~~ig~~~~~ 198 (458)
+. . .. ...+....+..+..+...+...++..|++|++.|+ .+.|+.+...++ .....+.+.+
T Consensus 332 ~~--------~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~--t~~g~~~~~g~~~~g~~~p~~~~ 394 (432)
T PRK10406 332 NV--------S--SP--YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRA--LGVGLSYAVANALFGGSAEYVAL 394 (432)
T ss_pred cC--------C--cH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccc--hhhhHHHHHHHHHHHhHHHHHHH
Confidence 10 0 00 11111111122233333445678899999999999 888877655443 2233444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=103.59 Aligned_cols=138 Identities=20% Similarity=0.187 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHh-h
Q 012666 43 IQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG-L 120 (458)
Q Consensus 43 ~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~-~ 120 (458)
....+.....+.|.|+++ +|++..+.++...+..++..++.++.|+++| |+||||.++............... .
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D----r~g~r~~~~~~~~~~~~~~~~~~~~~ 325 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD----RIGRRPVLIAFTVLAILTAYPALSWL 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677789998865 8999999898888888989999999999999 999999877644332222221111 1
Q ss_pred ccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHH-HHHHHHHHHHhhhcc
Q 012666 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL-FMAVGNILGYATGSF 199 (458)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~g~~ig~~~~~~ 199 (458)
..+. ..........+.+++.+...+....++.|.+|++.|+ .+.++... ...++..++|.+.+.
T Consensus 326 ~~~~-------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg--~~~g~~~~~~~~~~g~~~p~~~g~ 390 (434)
T PRK15075 326 VAAP-------------SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRT--AGFSLAYSLATAIFGGFTPAISTW 390 (434)
T ss_pred HcCC-------------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccc--hheeHHHHHHHHHHhhhHHHHHHH
Confidence 1110 0122223333444555565666678899999999999 77777543 333445667776555
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=100.28 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHH-HHhCCCchhhHHHHh-hhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcc
Q 012666 45 FGWALQLSLLTPYV-QELGIPHAWASIIWL-CGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (458)
Q Consensus 45 ~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~-~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (458)
........+.++++ +++|++..+.+++.. ...++..++.++.|+++| |+||||.+++.+....+..........
T Consensus 236 ~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~d----r~g~~~~l~i~~~l~~l~~l~~~~l~~ 311 (491)
T PRK11010 236 LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQ----RLSLFRALMIFGILQGVSNAGYWLLSI 311 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455666665 679999999999874 666788999999999999 999988776644432222222111111
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccc
Q 012666 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 202 (458)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 202 (458)
. . ...+.+.....+..++.+...+...++..+..+++.++ +..++.+...++|..+++.+.|.+..
T Consensus 312 ~---------~---~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~--t~~gl~~s~~~lg~~~~~~~~G~l~~ 377 (491)
T PRK11010 312 T---------D---KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSA--TQFALLSALSAVGRVYVGPVAGWFVE 377 (491)
T ss_pred c---------c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 01133333444444555555566788899999999888 88999999999998877777666332
Q ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccC
Q 012666 203 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (458)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 246 (458)
.. ||+..|.+.+++.++..+...+. +++
T Consensus 378 ~~---------------G~~~~f~~~~~~~l~~l~~~~~~-~~~ 405 (491)
T PRK11010 378 AH---------------GWPTFYLFSVAAAVPGLLLLLVC-RQT 405 (491)
T ss_pred Hh---------------ChHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 22 78888888887776665555443 443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-10 Score=105.72 Aligned_cols=136 Identities=18% Similarity=0.111 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhc
Q 012666 42 GIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121 (458)
Q Consensus 42 ~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~ 121 (458)
...........++|.+.+++|.+..+.+.+.+...++..++.++.|+++| |+|||+ ......+..+...++....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~-~~~~~~~~~~~~~~~~~~~ 335 (398)
T TIGR00895 261 MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLAD----RLGPRV-TALLLLLGAVFAVLVGSTL 335 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcchHH-HHHHHHHHHHHHHHHHHHh
Confidence 33445556667788777899999999999999999999999999999999 999884 4443433333333333212
Q ss_pred cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 122 ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
.+. ....+...+.+++.+...+...+++.|.+|+++|+ ++.++......+|..+++.++|.
T Consensus 336 ~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 336 FSP---------------TLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRA--TGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred hCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHhHHh
Confidence 222 44556667788888888888999999999999999 99999999999999999988764
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-07 Score=85.04 Aligned_cols=371 Identities=12% Similarity=0.042 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHH---HHH
Q 012666 34 LKVASVAGGIQFGWALQLSLLTPYVQELGI-PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC---GAI 109 (458)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~---~~~ 109 (458)
+.+....+....+.-+.....+.++.++.- +--..+.....-.+..++..|..|.+.| |..|.|..... --+
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD----~~~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWID----RSPRLKVIRTSLVVQNL 80 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHh----CCcchhhHHHHHHHHHH
Confidence 344555566666667777777888876632 3334455555666777889999999999 88777654432 111
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcch-hhHH----HHhhhc--ccccchhhhhhHHH
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG-PCRA----LLADLT--GKDHRRTRVANAYF 182 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~----~~~~~~--~~~~r~~~~~~~~~ 182 (458)
..++++.++...-... ............+++...+.+........ ...+ ++..+. +++.+. +.++..
T Consensus 81 sv~~s~~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La--~~NA~m 154 (432)
T PF06963_consen 81 SVAASCALFLLLLSYP----SSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALA--RMNATM 154 (432)
T ss_pred HHHHHHHHHHHHHhCC----ccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHH--HHHHHH
Confidence 2222222221111110 00000111122222222222211111111 1112 233333 233344 667777
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhcc-------ccCCCCCCCCCC
Q 012666 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA-------HEVPLGSHDQSA 255 (458)
Q Consensus 183 ~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~e~~~~~~~~~~ 255 (458)
.-.--+..+++|++.|.+.... +......+.++..++..++-++++ |+-..++.++.+
T Consensus 155 RRIDL~ckllaPl~vG~l~t~~---------------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~ 219 (432)
T PF06963_consen 155 RRIDLFCKLLAPLFVGLLMTFA---------------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSES 219 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccc
Confidence 7777788899999877743222 566666666666666655543332 221111111111
Q ss_pred CCCcccc-ccccchHHHHHHHHHHHHhcc---h------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccc
Q 012666 256 PFSEEGH-EQSSDVHEAFLWELFGTFRYF---S------GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQ 325 (458)
Q Consensus 256 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (458)
+.+++.+ .++........++..+.+++. . +.+...+ ...+.++....+....+.|+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~-alalLY~TVLsf~~lmt~yl~------------ 286 (432)
T PF06963_consen 220 ESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASF-ALALLYFTVLSFGGLMTAYLK------------ 286 (432)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHH-HHHHHHHHHhcCcHHHHHHHH------------
Confidence 1110000 011111111112221111110 1 2222222 222222222222223334432
Q ss_pred cccccchhHHHHHH--HHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC-CchHH
Q 012666 326 NYATGVRMGALGLM--LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLP-PNGIV 402 (458)
Q Consensus 326 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 402 (458)
+.|.+...++.. ..++.++.++++.+++.+|+|..+.=.++.....+++.+-...-+.+.. | ...+.
T Consensus 287 --~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~--------~~~~~s~ 356 (432)
T PF06963_consen 287 --SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGS--------PFSSISA 356 (432)
T ss_pred --HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCC--------CchhhHH
Confidence 123333323333 3567788889999999999999988877777666655544333211111 1 12233
Q ss_pred HHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhh
Q 012666 403 IAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454 (458)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 454 (458)
..++...++-=+|.=...-...-++.|.+|+ ++||...|+.+...++..+
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~--~~Rg~v~gvq~sl~~lf~l 406 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPE--SERGAVSGVQNSLQSLFEL 406 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCCH--HHhhHHHHHHHHHHHHHHH
Confidence 3444444444455555556667889999999 8899988887776665543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=104.27 Aligned_cols=130 Identities=13% Similarity=0.158 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccccc
Q 012666 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (458)
Q Consensus 49 ~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (458)
....++|.+.++.|.++.+.+.+.++..++..++.++.|+++| |+|||+.+.... +...+........++.
T Consensus 249 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~d----r~~~~~~~~~~~-~~~~~~~~~~~~~~~~---- 319 (426)
T PRK12307 249 PIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCAD----RIGLKKTFSIGL-LMSFLFIFPLFRIPQD---- 319 (426)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHH-HHHHHHHHHHHHHccc----
Confidence 3456788888888999999999989999999999999999999 999988776633 3333333322221111
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHH--hhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 129 GDRGDFRPRAIAVFVFGFWILDVA--NNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
....+...+.+.+ .....+..+.++.|.+|+++|+ ++.|+......+|..++|.+.+.+
T Consensus 320 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 320 -----------NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG--LGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred -----------cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh--hhhhHHHHHHhHHHHHHHHHHHHH
Confidence 1111112222222 2222345567889999999999 999999999999999999998774
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=102.78 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (458)
.+......+...........+.|.+.++.|.++.+.|.+.++..+...+..++.|++.| |+|+|+.+.. +.+...
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~l~~-~~~~~~ 281 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFR----RWSARDLLLL-SAICGV 281 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH----HCCHHHHHHH-HHHHHH
Confidence 33333333444444555667778888889999999999999888888889999999999 9999888665 445555
Q ss_pred HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHH-HHHHHHHH
Q 012666 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVGNI 191 (458)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g~~ 191 (458)
+........++. +..++..++.|++.+...+....+..+. ++++++ +..+... ....+|..
T Consensus 282 ~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~~ 343 (382)
T PRK11128 282 VRWGLMGSTTAL---------------PWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVI--RLQALYSALAMGGSIA 343 (382)
T ss_pred HHHHHHHhhhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhH--HHHHHHHHHHHHHHHH
Confidence 555555555444 6667778888888888888888888886 555667 7788775 55677888
Q ss_pred HHHhhhcccc
Q 012666 192 LGYATGSFSG 201 (458)
Q Consensus 192 ig~~~~~~~~ 201 (458)
+|+.++|.+.
T Consensus 344 ig~~i~G~l~ 353 (382)
T PRK11128 344 IMTVLSGFLY 353 (382)
T ss_pred HHHHHHHHHH
Confidence 9999888743
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.3e-09 Score=97.47 Aligned_cols=171 Identities=15% Similarity=0.073 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
+..+......++....++....++|.++++.|++.. .+....+..+.+.++. ++++||.. |.|||+.......+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~---~~~~d~~~-r~~~r~~~~~~~~~~ 266 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGV---AVIPDRVA-RAGLRSIYIRAAALL 266 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHH---HHhhHHhh-hhhhHHHHHHHHHHH
Confidence 344555555666666677778899999988888864 5666666655555554 67788221 234444433323333
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
..+.........+. ...++...+.+++.....+..+++.+|.+|++.|+ ++.|+.+...++|+
T Consensus 267 ~a~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rg--t~~G~~~~~g~~~~ 329 (368)
T TIGR00903 267 IAAFFLALAFELNR---------------LALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHG--KAAGAIGFTSRAIS 329 (368)
T ss_pred HHHHHHHHHHcccc---------------HHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcC--cccchhhHHHHHHH
Confidence 33333333222221 23333444455666666677889999999999999 99999999999999
Q ss_pred HHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Q 012666 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240 (458)
Q Consensus 191 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (458)
.+++.+.+.... +....|.+.++..+++.+...
T Consensus 330 ~~~~~~~~~~~~-----------------~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 330 VALALAAMLFIS-----------------SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHhc-----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 888887654211 455567777766666665553
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=103.09 Aligned_cols=173 Identities=12% Similarity=0.015 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH--HHHHHHH
Q 012666 41 GGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS--IAVAVLL 117 (458)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~--~~~~~~~ 117 (458)
+......+....++|.++++ .|.++.+.++...+..+...++.++.|+++| |+++++......... ...+...
T Consensus 261 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d----r~~~~~~~~~~~~~~~~~~~~~~~ 336 (438)
T TIGR00712 261 VFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFKGNRGATGVFFMTLVTIAVIV 336 (438)
T ss_pred HHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH----HhccCcccHHHHHHHHHHHHHHHH
Confidence 33334445566788999865 7999999999999999999999999999999 986543322222111 1112222
Q ss_pred HhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH-HHHHHhh
Q 012666 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG-NILGYAT 196 (458)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g-~~ig~~~ 196 (458)
....+.. . .+......++.+++.............|.+|+++|+ ++.|+.+....+| ..+++.+
T Consensus 337 ~~~~~~~----------~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~gg~~~gp~l 401 (438)
T TIGR00712 337 YWMNPAG----------N---PLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAI 401 (438)
T ss_pred HHhcCCC----------c---hHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhhee--eehhhhchHHHhhhhhhcchh
Confidence 1111110 0 022222223333322221122234677999999999 8999998887776 4678888
Q ss_pred hccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCC
Q 012666 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (458)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 247 (458)
.|...... +|...+.+.+++.+++.+..++.+||.+
T Consensus 402 ~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 402 VGYTVDFF---------------GWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHhc---------------cchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77643322 6888888888777777777778888764
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-09 Score=101.12 Aligned_cols=163 Identities=10% Similarity=0.031 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 34 LKVASVAGGIQFGWALQLSLLTPYVQEL--GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
+......+......+....++|.+++++ +.+..+.+.+.....++..++.++.|+++| |++||+..+....+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~d----r~~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSD----RLKERKHHTALPYLFA 320 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhc----ccCccHHHHHHHHHHH
Confidence 3344444445556667778999999875 667788899999999999999999999999 9998775443333333
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (458)
.+++.+....++ . ........+..++.....+.......|.+|+++|+ ++.|+.+....+|..
T Consensus 321 ~~~~~~~~~~~~-------------~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~a~g~~~~~~~~g~~ 383 (412)
T TIGR02332 321 AAGWLLASATDH-------------N--LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARA--IAIAVINATGNIGSA 383 (412)
T ss_pred HHHHHHHHhcCC-------------H--HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHH--HHHHHHHHhhhhhhh
Confidence 333322211111 0 11111112222333223333445557788999999 999999999999999
Q ss_pred HHHhhhccccccccccccccccccccccchhhHHHHHHHH
Q 012666 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIF 231 (458)
Q Consensus 192 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (458)
++|.+.+...... ++|++.+++.+++
T Consensus 384 ~~p~~~g~i~~~~--------------g~~~~~~~~~~~~ 409 (412)
T TIGR02332 384 LSPFLIGILKDAT--------------GSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhcccccccC--------------CCCchhHHHHHHH
Confidence 9998876633211 2588877766554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=100.46 Aligned_cols=188 Identities=17% Similarity=0.230 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELG-IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
.+......+..+........+.+.|+++.| .+....+.++++..+.-.+.-...+++.. |+|.|+.+++ +.+..
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~----r~g~~~ll~~-a~~~~ 283 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLK----RFGIKWLLLL-ALVAY 283 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHH-HHHHH
Confidence 444444455556677778889999999998 77788888888888888888888888888 9999888777 55556
Q ss_pred HHHHHHHhhc-cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHH-HHHH
Q 012666 112 AVAVLLIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF-MAVG 189 (458)
Q Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~g 189 (458)
++=..+.... ++. +.......+...+.|+..+........++.+..|++.|. ++.++++.. .++|
T Consensus 284 ~vR~~l~a~~~~~~-----------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~a--t~Q~l~~~~~~Glg 350 (400)
T PF03825_consen 284 AVRWLLYAYFSDPW-----------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRA--TAQGLYSALSFGLG 350 (400)
T ss_pred HHHHHHHHHhcCCc-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchH--HHHHHHHHHHhhHH
Confidence 6665555443 222 011122334455688999999999999999999999999 899987764 6899
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCC
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 247 (458)
..+|..++|.+.+.. +......|...+.+.+++.++..++.+++.||++
T Consensus 351 ~~iG~~igG~l~~~~---------g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 351 GAIGSLIGGWLYDAF---------GARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHHHHHHHHHh---------cchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 999999998843322 0011114555666666666666666666666653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-09 Score=103.65 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=102.8
Q ss_pred HHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCC
Q 012666 52 SLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD 130 (458)
Q Consensus 52 ~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (458)
.+.|.+.++ +|.+..+.+.+.....++..++.++.+++.| |+|||+.+.. +.....++.....+.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 299 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGR----YFKRMALMTG-AIFVIGLAILVVGLTPP------- 299 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH----HhchhHHHHH-HHHHHHHHHHHHHhhch-------
Confidence 677787765 8999999999999999999999999999999 9999887665 34444444444433321
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 131 RGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
..+...+...+.+++.+...+...+++.|..|+++|+ ++.++.+....+|..+++.+++.
T Consensus 300 -------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~g~~~~g~ 359 (365)
T TIGR00900 300 -------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLG--RVFGAQFSLSHAAWPLGLILAGP 359 (365)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1266667778888988888888999999999999999 99999999999999999988765
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-09 Score=101.37 Aligned_cols=180 Identities=8% Similarity=0.002 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchh------
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPF------ 103 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~------ 103 (458)
+..+......++.....+....++|.|+ +.+|.+..+.++..++..++..++.++.|+++| |+++|+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d----~~~~~~~~~~~~~~ 336 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLAD----FLKSSKTLSLTAAR 336 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCcHHHHH
Confidence 3455556666666667777778999998 568999999999999999999999999999999 55433211
Q ss_pred -HHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHH
Q 012666 104 -IVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182 (458)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 182 (458)
+.............+..... . ......++...+.+.+.+...+.......|..|+ .++ .+.++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g--~~~g~~ 401 (465)
T TIGR00894 337 KIFNGIGGLGPGIFAYALPYL----------S--AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLG--FIKGIT 401 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHc----------C--CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHH--HHHHHH
Confidence 11111111111111111100 0 0012233333344444444445555566677764 788 899999
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHh
Q 012666 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 183 ~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (458)
+....+|..+++.+.+...... ..++|+..|.+.++..++..++..+
T Consensus 402 ~~~~~l~~~i~p~l~g~~~~~~------------~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 402 GLPGFIGGLIASTLAGNILSQD------------SKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHhhheeeCCC------------CchHHHHHHHHHHHHHHHHHHHeee
Confidence 9999999999998866532110 0025888888888777766655544
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=96.83 Aligned_cols=135 Identities=10% Similarity=0.025 Sum_probs=94.6
Q ss_pred HHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 48 ALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 48 ~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
.....+.|.+. +++|.++.+.++......++..++.++.|+++| |+++|+.+.. +.+...++.......+..
T Consensus 232 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~----r~~~~~~~~~-~~~~~~~g~~~~~~~~~~-- 304 (406)
T PRK15402 232 LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTS----RRPLRSLIRM-GLWPMVAGLLLAALATVI-- 304 (406)
T ss_pred HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHH-HHHHHHHHHHHHHHHHHc--
Confidence 33445567765 668999999998877777788889999999999 9999887766 444444444444332211
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
. ....+..++...+.+++.+...+......... ++++|+ ++.+..+....+|..+|+.+++..
T Consensus 305 ------~--~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g--~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 305 ------S--SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKG--TVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred ------c--cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccccc--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 01124455667777888877766665555443 458889 999999999999999999887764
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=101.26 Aligned_cols=163 Identities=9% Similarity=0.049 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh----CCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHH
Q 012666 42 GIQFGWALQLSLLTPYVQEL----GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (458)
Q Consensus 42 ~~~~~~~~~~~~l~~~~~~~----g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~ 117 (458)
+....+.......+.|.++. +.+..+.|.+.++..+...+..+..|++.| |+|||+.+++.. ....+....
T Consensus 226 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~----r~g~~~~l~~~~-~l~~l~~~~ 300 (396)
T TIGR00882 226 GVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIIN----RIGAKNALLIAG-TIMSVRIIG 300 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccchhHHHHH-HHHHHHHHH
Confidence 33334444444566666443 455667888888888888889999999999 999999876644 444445454
Q ss_pred HhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHH-HHHHHHHHHHHHHhh
Q 012666 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVGNILGYAT 196 (458)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~ig~~~ 196 (458)
....++. +.+.+...+.+++..........+..+..+++.++ ...+. .+....+|..+++.+
T Consensus 301 ~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--t~~~~~~~~~~~lg~~~~~~l 363 (396)
T TIGR00882 301 SSFATTA---------------LEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSA--TIYLIGFQFAKQLAMIFLSTL 363 (396)
T ss_pred HHhcCCh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEE--EeehHHHHHHHHHHHHHHHHh
Confidence 4444443 55556677777776655555566777777777777 55554 567889999999998
Q ss_pred hccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHh
Q 012666 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (458)
+|.+.... |++..|.+.+++.++..++..+
T Consensus 364 ~G~l~~~~---------------G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 364 AGNMYDSI---------------GFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 88743322 7888899888887777666544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-06 Score=82.66 Aligned_cols=330 Identities=10% Similarity=-0.013 Sum_probs=177.9
Q ss_pred HhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHH
Q 012666 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151 (458)
Q Consensus 72 ~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (458)
.++-.....+.+++.+.+.| +.|.|..+++.+...... ...+.+.++ +.+++...+.|+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~----~i~~K~~lv~ga~~y~~f-~~gfl~~N~----------------y~~yfssallG~ 114 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVN----FLGPKWALVIGATCYAAF-PLGFLFPNS----------------YYLYFSSALLGF 114 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHH----HhhHHHHHHHHhHHHHHH-HHHHHhcch----------------HHHHHHHHHhhh
Confidence 45555667788888899999 999999888855443333 333323322 778889999999
Q ss_pred HhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchh--------h
Q 012666 152 ANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLK--------S 223 (458)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 223 (458)
|.+..+...-.+++|..+++.+. +..++.-.....+.++|+..-.......... +....+.+ .
T Consensus 115 Gaallw~GqG~ylt~~st~~tie--~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 185 (461)
T KOG3098|consen 115 GAALLWTGQGGYLTSNSTRETIE--RNISIFWAIGQSSLIIGGIILFIYFQFSSSS-------AIITDGTRRLVFEVLFI 185 (461)
T ss_pred hHHheecccceehhhcCChhhHH--HHHHHHHHHHHHHHHhhhHhheeeeEecccc-------cccccchhhhhcchhhh
Confidence 99999999999999999999988 8888888888888888876644321111000 00000110 0
Q ss_pred ---HHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 012666 224 ---AFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300 (458)
Q Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (458)
...+.+++..+..+-..-...++.+....+ .+.. +....+.++...+.+++ +++..+....+..++.
T Consensus 186 ~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~-------~~~~-~~~~~~~l~~~~~l~~~--~~ml~L~~~f~~tG~~ 255 (461)
T KOG3098|consen 186 DFEIKVLFGVLLAISVLSIINFDFLPSKDVVNC-------KSSS-ETSFSELLKLTFKLLKT--PKMLLLFPFFFYTGLE 255 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhheeecCccchhhh-------hhhc-cccHHHHHHHHHHHhcC--HhHHHHHHHHHHHHHH
Confidence 111111111111111111111111111100 0000 02244556666777777 6666665555554443
Q ss_pred HHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh---hcChhhHHHHHHHHHHHHH
Q 012666 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK---WGAGFIWGISNILMALCFL 377 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g~r~~~~~~~~~~~~~~~ 377 (458)
........|..+.-.. ..... ....-.+..+..+++.+++....+.+.|| +|+++.+.++..+..+..+
T Consensus 256 ~Sf~~~iypt~i~ft~---~~~~n-----~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~ 327 (461)
T KOG3098|consen 256 TSFWISIYPTCISFTR---KLGSN-----TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFL 327 (461)
T ss_pred HHHHHhccchhhhhhh---hccCc-----chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHH
Confidence 3333333333332110 00000 11111223333566666777777777765 4777877777766666555
Q ss_pred HHHHHHHHhhh-ccc-CCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhh
Q 012666 378 AMLILYYVAIH-MDY-RGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQ 453 (458)
Q Consensus 378 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 453 (458)
+.-... ..+. -+. +...+..........++..+.|++-+...+.-+.++.+..|+ .+..+.+++-+-..++.
T Consensus 328 li~l~~-p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~---~~~~~fsi~kfyq~~~s 401 (461)
T KOG3098|consen 328 LIHLSF-PNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPD---DRAQAFSLFKFYQSVAS 401 (461)
T ss_pred HHhccc-cccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHH
Confidence 544332 0000 000 000011122345677888889999999999999999999964 34444444444444333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=97.63 Aligned_cols=186 Identities=15% Similarity=0.081 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
+.|.++..+++..-.+.....++|.+.++ .++.........+..+...+..|++|+++| |+|+||++++....+.
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LAD----RiG~~~vl~~~~i~~~ 327 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISD----KFGGVRVTLINFIFMA 327 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHH----hcCchHHHHHHHHHHH
Confidence 45556655555433444455678888754 333333333344566788999999999999 9999998887665544
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccc------c-------------c
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK------D-------------H 172 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~-------------~ 172 (458)
+.........+.. ....++...+......++.+........++++.+|+ + +
T Consensus 328 i~~~~~~l~lp~~----------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~ 397 (462)
T PRK15034 328 IFSALLFLTLPGT----------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAV 397 (462)
T ss_pred HHHHHHHHHhccc----------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHH
Confidence 4443333332211 112235555555555567777777888888888874 1 0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccC
Q 012666 173 RRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (458)
Q Consensus 173 r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 246 (458)
|..+.+.|+.+....+|..+-|.+-+.... ..+++...|+...+..++|.++.++..-++
T Consensus 398 ~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~--------------~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 398 TETAAALGFISAIGAVGGFFIPQAFGMSLN--------------MTGSPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHH--------------HcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 112256777777777777666654333111 013677788888888888888887765443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.2e-09 Score=99.33 Aligned_cols=169 Identities=11% Similarity=0.029 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHH
Q 012666 41 GGIQFGWALQLSLLTPYV---QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (458)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~---~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~ 117 (458)
+...+.......+.+.+. ++.+.+....+.+.....+.....+++.|++.| |+++|+.+.. +.....+++..
T Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~l~~-~~~~~~~~~~~ 290 (395)
T PRK10054 216 FLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLN----AANIRPLMTA-GTLCFVIGLVG 290 (395)
T ss_pred HHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHc----cCCchhHHHH-HHHHHHHHHHH
Confidence 333333333334455554 344566667788888877777777888899999 9999887665 44444444444
Q ss_pred Hhhc-cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Q 012666 118 IGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (458)
Q Consensus 118 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (458)
.... ++. +.+.+...+.+++.....+...+.+.+..|++.|+ ++.+..+ ...+|..+||.+
T Consensus 291 ~~~~~~~~---------------~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~--~~~~~~~-~~~~G~~~Gp~~ 352 (395)
T PRK10054 291 FIFSGNSL---------------LLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKA--SYFSAQS-LGWLGAAINPLV 352 (395)
T ss_pred HHHcchHH---------------HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccce--ehHhHHH-HHHHHHHHHHHH
Confidence 4332 222 44455667778888777778888999999999999 7877655 566899999999
Q ss_pred hccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCC
Q 012666 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (458)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 247 (458)
+|.+.... +....|++.+....+..++.....+|+|
T Consensus 353 ~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 353 SGVILTTL---------------PPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HHHHHHHc---------------ChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 88754332 6666677766655555555554455544
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.3e-09 Score=100.13 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCC-cchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-RRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Gr-r~~~~~~~~~~~ 111 (458)
.+.++.......+++.....++|.+.++.+++..+...+.++..+...++.++.|+++| +... |+.+...+.+..
T Consensus 300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD----~~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLAD----KPGIRALVLFLLTLLIA 375 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcC----ccccchHHHHHHHHHHH
Confidence 44455555556678888888999999999999999999999999999999999999999 7663 344444455555
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (458)
.++.....+.+++ +.++....+.|+..+.........+.|+.+.++-. .+.|+...+.+++.+
T Consensus 376 gl~~~~~p~~~~~---------------~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~--~a~Gl~l~~~gi~~l 438 (509)
T KOG2504|consen 376 GLARLFLPFATTY---------------VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLS--NAYGLLLLFQGIGAL 438 (509)
T ss_pred HHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcc--hHHHHHHHHhHHHHH
Confidence 5555555566665 67777788888888888777778999999999998 899999999999999
Q ss_pred HHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHh
Q 012666 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 192 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (458)
+|+.+++...... ++|...|+..++..++..++.++
T Consensus 439 ~gpPiag~~~d~t--------------g~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 439 VGPPIAGLLYDIT--------------GNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred cCcccceeeeecc--------------CCeeeehhhcChHHHHHHHHHHH
Confidence 9999988632211 35888888888777766655433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=90.41 Aligned_cols=181 Identities=11% Similarity=0.037 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
.+..|.+...+-.+++.++....++|.+..|.|+|+.+.|.+.+...+.+....+....+.+ |...+|++.+....
T Consensus 207 ~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~----R~~n~r~~~~~~~~ 282 (395)
T COG2807 207 SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLAR----RSKNQRPLVVLALL 282 (395)
T ss_pred CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHH----HhcccchHHHHHHH
Confidence 34456666666667788999999999999999999999999999999999999999999999 65555555555666
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
++.++++.+.+.|.- ..+....+.|+|.+...+.....+.+..++.++.. +..++.+....+=
T Consensus 283 ~~l~G~~G~~~~P~~----------------~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa-~LSgmaQg~GYll 345 (395)
T COG2807 283 LMLVGLVGLLLAPGQ----------------LPILWALLLGLGQGGAFPLALTLILLRSSDAAIAA-ALSGMAQGVGYLL 345 (395)
T ss_pred HHHHHHHHHHHhhhh----------------HHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHH-HHHHHhhhhhHHH
Confidence 666666655454432 11122477889999999999999998887655432 5666666666666
Q ss_pred HHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhcccc
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE 245 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 245 (458)
..+||.+.|++.+.. ++|+......+...++..+..+..-|+
T Consensus 346 Aa~GP~l~G~lhDa~--------------gsw~~~~~~l~~~~i~m~i~Gl~a~r~ 387 (395)
T COG2807 346 AAFGPWLFGFLHDAT--------------GSWSAPLVLLALATLLMLIFGLRAGRN 387 (395)
T ss_pred HhhhhhhHhHHHHhc--------------CChHHHHHHHHHHHHHHHHHHhhcchh
Confidence 677777766543222 488888887777666666666554443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=97.01 Aligned_cols=166 Identities=14% Similarity=0.105 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhh-hhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHh
Q 012666 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (458)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (458)
+...........+.+++.+|.|++++++|++.....+ ...++.++.|++.| |+|+||.+........+.......
T Consensus 218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~----r~g~~~~l~~~~~~~~~~~~~~~~ 293 (390)
T TIGR02718 218 LLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVR----RAGLWRTFILGVGLAGSLALLWFA 293 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555667888888899999999998887764 55566889999999 999998877644332122222221
Q ss_pred hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccc-ccchhhhhhHHHHHHHHHHHHHHHhhhc
Q 012666 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFSLFMAVGNILGYATGS 198 (458)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (458)
..... .............+.+++.+...+...+...+..++ +.++ +.++..+...++|..+++.++|
T Consensus 294 ~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~lg~~~g~~~~G 361 (390)
T TIGR02718 294 QAAFW----------LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAG--TDVTAVQSTRDLGELIASSIAG 361 (390)
T ss_pred HHHcc----------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 000112223333344455666667777777777766 7788 8999999999999999999988
Q ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHH
Q 012666 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTC 237 (458)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (458)
...... +++..|...+++.++..+
T Consensus 362 ~l~~~~---------------G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 362 YLTDRF---------------GYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHH---------------ccHHHHHHHHHHHHHHHH
Confidence 743322 677778777665555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.6e-07 Score=82.80 Aligned_cols=387 Identities=13% Similarity=0.083 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hCCCchhhHHHHhhhhhhhhhhccccceecccc-CCcCCCcchhHHHHHHHHH
Q 012666 36 VASVAGGIQFGWALQLSLLTPYVQE--LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRC-TSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~-~~r~Grr~~~~~~~~~~~~ 112 (458)
+.+.++.++.-.+.....+|.++++ .+.|-++.+....+.. . .-.-+++.++.|.. ..|+||||.+++-.-.+..
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~-P-fSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g 82 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASY-P-FSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG 82 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeec-h-hHHHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence 3344444444444444567888877 6788777775433211 1 11234455555643 3499999999885544444
Q ss_pred HHHHHHhhccccc-------cccCCCCCCC--chhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHH
Q 012666 113 VAVLLIGLSADIG-------WLLGDRGDFR--PRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (458)
Q Consensus 113 ~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (458)
+..+.+...-+-. +...+++... ......+....+++-+..+....+...+.-.+..++.++ .+.....
T Consensus 83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~--~ASTcqt 160 (544)
T PF13000_consen 83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVG--YASTCQT 160 (544)
T ss_pred HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcc--hHHHHHH
Confidence 4333332221100 0000011111 112223333333444556677778888888888889999 8888788
Q ss_pred HHHHHHHHHHHhhhcccccccccc-ccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCC-------C
Q 012666 184 LFMAVGNILGYATGSFSGWFKILP-FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQS-------A 255 (458)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-------~ 255 (458)
.+.++|-.++..+--.+....+-. +......+...-....-..+-+.+.++..++..++.+|.+..+..++ +
T Consensus 161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~ 240 (544)
T PF13000_consen 161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD 240 (544)
T ss_pred hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence 888888777766532222111000 00000000000122223344455666666777777777654321110 0
Q ss_pred CCCc----cccccc------cchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccc
Q 012666 256 PFSE----EGHEQS------SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQ 325 (458)
Q Consensus 256 ~~~~----~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (458)
.+++ +.++++ ....++..+.+++.+|. |+.+.+++..+..-+++.+.-.-...=
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkL--p~V~~li~ilL~~KigF~a~da~T~LK-------------- 304 (544)
T PF13000_consen 241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKL--PNVQTLIIILLTAKIGFQANDAVTSLK-------------- 304 (544)
T ss_pred ccccccceecccccccchhhhhhHHHHHHHHHHHHcC--chHHHHHHHHHHHHhccccchhhhHHH--------------
Confidence 0000 000111 11234456666777777 777777766666555443322111111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh--cChh-----------------------------hHHHHHHHHHH
Q 012666 326 NYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW--GAGF-----------------------------IWGISNILMAL 374 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~-----------------------------~~~~~~~~~~~ 374 (458)
..+.|....-++++ .+..++..++.|+++.|+ |+++ .+..++..-.+
T Consensus 305 LlEkG~~KE~LAl~--~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~ 382 (544)
T PF13000_consen 305 LLEKGLSKEDLALL--VLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLV 382 (544)
T ss_pred HHHcCCCHHHhHHH--HHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHH
Confidence 12223333333333 345566677777777776 3332 11222222111
Q ss_pred HHHHHHH-HHHHhhhcccCCCCCCCchHHHHH-HHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhh
Q 012666 375 CFLAMLI-LYYVAIHMDYRGHDLPPNGIVIAA-LIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIP 452 (458)
Q Consensus 375 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 452 (458)
..++... ....+ ++++.+.....+ ++.-++..+.....+....+.-+++.+| .--|+++-+.|...++|
T Consensus 383 ~a~l~~~iV~~fP-------~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP--~IGGTYMTLLNTvSNLG 453 (544)
T PF13000_consen 383 AALLAQLIVYFFP-------SDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDP--AIGGTYMTLLNTVSNLG 453 (544)
T ss_pred HHHHHHheEEeCC-------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--ccchHHHHHHHHHHhcC
Confidence 1111111 11011 111111122222 2223333344444555566777788888 88899999999999988
Q ss_pred h
Q 012666 453 Q 453 (458)
Q Consensus 453 ~ 453 (458)
.
T Consensus 454 G 454 (544)
T PF13000_consen 454 G 454 (544)
T ss_pred C
Confidence 6
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=100.03 Aligned_cols=156 Identities=15% Similarity=-0.011 Sum_probs=100.5
Q ss_pred HHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCC
Q 012666 54 LTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD 133 (458)
Q Consensus 54 l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (458)
++.+.++++.+..... .+..+...++.++.++++| |+|||+.+++.. +...++++...+.++.
T Consensus 346 ~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~d----r~grr~~~~~~~-~~~~~~~l~~~~~~~~--------- 408 (505)
T TIGR00898 346 LVLDLGNLGGNIYLDL---FISGLVELPAKLITLLLID----RLGRRYTMAASL-LLAGVALLLLLFVPVD--------- 408 (505)
T ss_pred HhccccccCCChHHHH---HHHHHHHHHHHHHHHHHHH----HhCCHHHHHHHH-HHHHHHHHHHHHcCCC---------
Confidence 3344455665543333 3444566677788899999 999998877744 4444444444443321
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccccccc
Q 012666 134 FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSA 213 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~ 213 (458)
..+...+...+.+++.+...+...++..|.+|++.|+ ++.|+.+....+|.+++|.+.+. ..
T Consensus 409 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~g~~~~~~~ig~~i~p~i~~~-~~----------- 470 (505)
T TIGR00898 409 ----LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN--LGVGVCSTMARVGSIISPFLVYL-GE----------- 470 (505)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh--hhHhHHHHHHHHHHHHHhHHHHH-HH-----------
Confidence 0122333344445666666777889999999999999 99999999999999999988662 11
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012666 214 CNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS 250 (458)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 250 (458)
.++...+.+.+++.++..+.. +++||++.++
T Consensus 471 -----~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~ 501 (505)
T TIGR00898 471 -----KWLFLPLVLFGGLALLAGILT-LFLPETKGVP 501 (505)
T ss_pred -----HHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCC
Confidence 144556666666655554444 5678776543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=97.80 Aligned_cols=184 Identities=16% Similarity=0.140 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCc-C---CCcchhHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-F---GRRRPFIVCG 107 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r-~---Grr~~~~~~~ 107 (458)
++.+.+..++...+......++|.|+ +.+|++..+.|++.++..+...+...+.|.++||.+.| + -+||.+-..+
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~ 339 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA 339 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence 45566777777788899999999999 55999999999999999999999999999999965443 1 2445555555
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHH
Q 012666 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (458)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (458)
....++.++.+.+.++. ........+.+.. ...+...+....-..|.. ++.-+ ..+++.+....
T Consensus 340 ~~~~ai~l~~l~~~~~~---------~~~~a~~~l~~~~----~~~g~~~~Gf~~~~~~~a-pq~a~--~l~g~~~~~~~ 403 (466)
T KOG2532|consen 340 FGGPAVFLLVLAFTSDE---------HRLLAVILLTIAI----GLSGFNISGFYKNHQDIA-PQHAG--FVMGIINFVGA 403 (466)
T ss_pred HHHHHHHHHeeeecCCC---------cchHHHHHHHHHH----HHcccchhhhHhhhhhcc-chHHH--HHHHHHHHHHH
Confidence 55555555555444331 1111112222222 222222223333333433 35566 89999999999
Q ss_pred HHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccc
Q 012666 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (458)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (458)
+..+++|.+.+..... +....|+..|++.+++.++..++..++-.
T Consensus 404 ~~~~~~P~~vg~~~~~------------~t~~eW~~VF~i~a~i~~~~~i~f~~f~s 448 (466)
T KOG2532|consen 404 LAGFIAPLLVGIIVTD------------NTREEWRIVFLIAAGILIVGNIIFLFFGS 448 (466)
T ss_pred HHHHHHHHheeeEeCC------------CCHHHHHHHHHHHHHHHHHhchheeEeec
Confidence 9999999987763210 02248999999999988887766655543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.4e-08 Score=92.08 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=97.2
Q ss_pred HHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhh-ccccccc
Q 012666 50 QLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL-SADIGWL 127 (458)
Q Consensus 50 ~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 127 (458)
...+++++. +..|.++.+.+++.+...++..++.++.|+++| |+|+|+.+.... ....++.+.... .++.
T Consensus 218 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~----r~~~~~~~~~~~-~~~~i~~~~~~~~~~~~--- 289 (382)
T PRK10091 218 WFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSG----RYSPLRIAAVTD-FIIVLALLMLFFFGGMK--- 289 (382)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecc----ccCchhHHHHHH-HHHHHHHHHHHHHHhhH---
Confidence 344556666 558999999999999999999999999999999 999988877643 334444433322 2221
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHH-HHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccc
Q 012666 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRA-LLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (458)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (458)
+...+...+.+.+.....++... ...+..+++.++ .+ .......+|..+|+.++|......
T Consensus 290 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~g~~~Gp~~~G~l~~~~-- 351 (382)
T PRK10091 290 ------------TASLIFAFICCAGLFALSAPLQILLLQNAKGGELLG--AA--GGQIAFNLGSAIGAYCGGMMLTLG-- 351 (382)
T ss_pred ------------HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHH--HH--HHHHHHHHHHHHHHHHhHHHHHcc--
Confidence 23333344444544444444443 333444444444 33 335677899999999988743321
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhc
Q 012666 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (458)
.+|+..+.+.+.+..+........
T Consensus 352 ------------~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 352 ------------LAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred ------------cCcchHHHHHHHHHHHHHHHHHHH
Confidence 278888888776655554444333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-08 Score=92.95 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=105.4
Q ss_pred HHHHH-HHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccccc
Q 012666 50 QLSLL-TPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (458)
Q Consensus 50 ~~~~l-~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (458)
...++ |.+.+++|++..+.+.+.....++..++.++.|++.| |. +|+.++....+..+..+.+....++.
T Consensus 235 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~----r~-~~~~l~~~~~~~~~~~~~l~~~~~~~---- 305 (394)
T PRK10213 235 FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILK----RS-VKLALAGAPLVLAVSALVLTLWGSDK---- 305 (394)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHh----cc-chhHHHHHHHHHHHHHHHHHHHhhhH----
Confidence 33454 6667889999999999999999999999999999999 85 44544443444344434433333332
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccc
Q 012666 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 208 (458)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~ 208 (458)
+...+...+.|++.+...+...+++.+..| ++++ +..+......++|..+|+.++|.+....
T Consensus 306 -----------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~lg~~~G~~l~G~l~~~~---- 367 (394)
T PRK10213 306 -----------IVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAE--KAGSIQVAVIQLANTCGAAIGGYALDNI---- 367 (394)
T ss_pred -----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 555566777888888888888888988887 4555 6677777788899999999988743322
Q ss_pred cccccccccccchhhHHHHHHHHHHHHHHH
Q 012666 209 TLTSACNVDCANLKSAFFLDVIFIAITTCI 238 (458)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (458)
+++..+...+++.++..+.
T Consensus 368 -----------g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 368 -----------GLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred -----------ChhhHHHHHHHHHHHHHHH
Confidence 6666777766555444433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=94.14 Aligned_cols=146 Identities=11% Similarity=-0.025 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (458)
.+............+.....++|.+.++.|.+..+.+.+.++..++..++.++.|+++| |+++||..+..+.....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~d----r~~~~~~~~~~~~~~~~ 274 (355)
T TIGR00896 199 AWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALAR----RVKDQRGIVAVLAVLQL 274 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHh----hhccchHHHHHHHHHHH
Confidence 33333333333445556667889999889999999999999999999999999999999 99554544443545455
Q ss_pred HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcc-cccchhhhhhHHHHHHHHHHHH
Q 012666 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFSLFMAVGNI 191 (458)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~g~~ 191 (458)
++.....+.++. ... ....+.|++.+...+...+.+.+..+ +++++ ...++.+....+|..
T Consensus 275 ~~~~~~~~~~~~---------------~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 336 (355)
T TIGR00896 275 VGLCGLLFAPMH---------------GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAA--ALSAMAQSIGYLLAA 336 (355)
T ss_pred HHHHHHHHhhhh---------------HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHH--HHHHHHHHHHHHHHH
Confidence 555444443321 111 13456678888777777776665554 45567 788888888888888
Q ss_pred HHHhhhccc
Q 012666 192 LGYATGSFS 200 (458)
Q Consensus 192 ig~~~~~~~ 200 (458)
++|.+.|.+
T Consensus 337 ~gp~~~G~l 345 (355)
T TIGR00896 337 LGPLFVGVL 345 (355)
T ss_pred HHHHHHHHH
Confidence 999887763
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=91.38 Aligned_cols=176 Identities=15% Similarity=0.102 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHH
Q 012666 34 LKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (458)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (458)
.......+..+=+.+........|. .++|++..+..++.....+..++++.++|++.| |+|.|++++.+.++...
T Consensus 255 ~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~----rfg~k~vl~~~lvi~~~ 330 (438)
T COG2270 255 VLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDE----RFGSKPVLMIGLVILSI 330 (438)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCceeehHHHHHHHH
Confidence 3333444444445555556666676 589999999999999999999999999999999 99999888775555555
Q ss_pred HHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Q 012666 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (458)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (458)
.+...+..-.. .-+.+...+.|...+..+..+.++..+++|+++.+ +.+|+++.....+..+
T Consensus 331 ~~~~~~~~~~~----------------~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~--~fFglyaltgra~S~~ 392 (438)
T COG2270 331 AALYLIFLEGE----------------LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEG--RFFGLYALTGRAASFL 392 (438)
T ss_pred HHHHHHHcccc----------------HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccc--ceeehhhhhhhHHHHH
Confidence 55544432222 33445556677888999999999999999999999 9999999999999999
Q ss_pred HHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccC
Q 012666 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (458)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 246 (458)
||.+-+...... ++-|..+....++..+. ++.++.+|++
T Consensus 393 gp~lv~v~t~iT--------------g~~r~g~~~i~vll~iG-l~~L~~v~~~ 431 (438)
T COG2270 393 GPFLVAVITQIT--------------GSSRAGVLSIIVLLLIG-LLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHHh--------------cchhhHHHHHHHHHHhh-HhhEEeecCC
Confidence 999876632211 25565565555444443 3444555554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=109.16 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHH-HHhCCCch-hhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccc
Q 012666 46 GWALQLSLLTPYV-QELGIPHA-WASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (458)
Q Consensus 46 ~~~~~~~~l~~~~-~~~g~s~~-~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~ 123 (458)
.......++|.+. +.+|.+.. +.+++.+...++..++.++.|+++| |+++|+.+.++. +...++.+++.+..+
T Consensus 247 ~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~----r~~~~~~~~~~~-~~~~~~~~~~~~~~~ 321 (1146)
T PRK08633 247 ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSG----RHIELGLVPLGA-LGLALSLFLLPTAPS 321 (1146)
T ss_pred HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC----CceEccchhHHH-HHHHHHHHHHHHhhh
Confidence 3444556677776 66899998 9999999999999999999999999 999888776633 444444444444444
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
. +.+++..++.+++.+...++..+++.+.+|++.|+ +++++.+....+|..+++.+++.
T Consensus 322 ~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg--~~~~~~~~~~~lg~~~~~~~~~~ 380 (1146)
T PRK08633 322 L---------------ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELG--KVLAANNFLQNVGMLLFLALTTL 380 (1146)
T ss_pred H---------------HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchh--hhhHHHHHHHHHHHHHHHHHHHH
Confidence 3 55667777788888888888899999999999999 99999999999998888777665
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-09 Score=100.53 Aligned_cols=148 Identities=19% Similarity=0.128 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCC-cchhHH-HHHHH
Q 012666 34 LKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-RRPFIV-CGAIS 110 (458)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Gr-r~~~~~-~~~~~ 110 (458)
+......+...........+.|.+. +++|.+..+.+.+.+...++..++.++.|+++| |..+ |+..+. .....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~~~~~~~~ 294 (379)
T TIGR00881 219 WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSD----KLFNGRRGPLAVFFMAL 294 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHH----HHcCCcchHHHHHHHHH
Confidence 3334444444445556667788887 568999999999999999999999999999999 7543 332222 12122
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
...+.......+. .......+...+.|.......+....+..|..|+++|+ ++.++.+....+|.
T Consensus 295 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~ 359 (379)
T TIGR00881 295 IIVSLLVYWLNPA-------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAG--TAAGFVGFFAYLGG 359 (379)
T ss_pred HHHHHHHHhcCcc-------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhH--HHHHHHHHhhhhhh
Confidence 2222222211111 01133334444455544444555667889999999999 99999999999999
Q ss_pred HHHHhhhccc
Q 012666 191 ILGYATGSFS 200 (458)
Q Consensus 191 ~ig~~~~~~~ 200 (458)
.+++.+.+.+
T Consensus 360 ~~~~~~~g~l 369 (379)
T TIGR00881 360 ILAGLPLGYL 369 (379)
T ss_pred hhhhhhHHHH
Confidence 9999887764
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-09 Score=104.46 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
++......+...........+.+.+.++ ++ ++.+.+.+..+..++..++.++.++++| |+|||+.+.. +....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~----r~g~~~~~~~-~~~~~ 297 (437)
T TIGR00792 224 LLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVK----KFGRKILFAG-GILLM 297 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHH-HHHHH
Confidence 3333333444444444444444444443 34 4566777778888899999999999999 9999988776 44444
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcc-------cccchhhhhhHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-------KDHRRTRVANAYFSL 184 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~ 184 (458)
+++.+...+.++ ..+...+...+.+++.+...+...++++|..+ ++++| .+.++.+.
T Consensus 298 ~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~ 361 (437)
T TIGR00792 298 VLGYLIFFFAGS--------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG--LVYSVRTF 361 (437)
T ss_pred HHHHHHHHHcch--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH--HHHHHHHH
Confidence 455444433221 11444556667778888888888899988875 34456 88999999
Q ss_pred HHHHHHHHHHhhhccc
Q 012666 185 FMAVGNILGYATGSFS 200 (458)
Q Consensus 185 ~~~~g~~ig~~~~~~~ 200 (458)
...+|..+++.+.+.+
T Consensus 362 ~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 362 VRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988873
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.7e-08 Score=96.94 Aligned_cols=137 Identities=15% Similarity=0.049 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcc
Q 012666 44 QFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (458)
Q Consensus 44 ~~~~~~~~~~l~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (458)
.+.......++|.+++ .+|.++.+.|.......++..++.++.|++.| |+|||+.+.. +.....++...+....
T Consensus 272 ~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~-g~~~~~~~~~~l~~~~ 346 (495)
T PRK14995 272 MITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVS----RLGLRLVATG-GMALSALSFYGLAMTD 346 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHH-HHHHHHHHHHHHHHhc
Confidence 3344455567788875 47999999999999999999999999999999 9999876654 4444444444333221
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
.. ...+.......+.|++.+...++....+.+..|+++++ .+.+..+....+|..+|..+.+.
T Consensus 347 ~~------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~lG~~~G~ai~g~ 409 (495)
T PRK14995 347 FS------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAA--AAGAIETMAYELGAGLGIAIFGL 409 (495)
T ss_pred CC------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 11133445667788898888888888889999999999 99999999999999999988777
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-08 Score=93.93 Aligned_cols=130 Identities=15% Similarity=0.280 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccC
Q 012666 50 QLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (458)
Q Consensus 50 ~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (458)
...++|.+.++.+.++.+.+++.++..+.........+++.|| |++.|+.+.. +.....++...+...++.
T Consensus 227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~-~~~~~~~~~~~l~~~~~~----- 297 (400)
T PRK11646 227 VMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEK---RFRLEHRLMA-GLLIMSLSMFPIGMVSNL----- 297 (400)
T ss_pred HHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchhHHHHH-HHHHHHHHHHHHHHhhhH-----
Confidence 3456788887766677888888887777666555555666662 5555554444 444445555555444443
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
+...+...+.+++.+...+...+++.|..|+++|+ ++.++.+....+|..+|+.++|.+
T Consensus 298 ----------~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 298 ----------QQLFTLICLFYIGSIIAEPARETLSASLADARARG--SYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred ----------HHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccch--hhhhHHHHHHHHHHHhcccchHHH
Confidence 44445556667777777788889999999999999 999999999999999999998874
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=94.69 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 46 GWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 46 ~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
+......+.|.+. +++|.++.+.+++..+..++..++.++.|++.| |+|||+.+........+.+.........
T Consensus 209 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~~~~~~~~~~~~~~~~~~~- 283 (377)
T PRK11102 209 GMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVR----RVGALNMLRFGLWIQFIMGIWLVVSALL- 283 (377)
T ss_pred HHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344444556555 668999999999999999999999999999999 9999988776444333333322221100
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHH-HHHHHHHHHhhhc
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF-MAVGNILGYATGS 198 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~g~~ig~~~~~ 198 (458)
....+...+...+...+.+.........+.|..| ++++ ++.+..+.. ..+|..+++.+++
T Consensus 284 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 284 -----------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAG--TASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred -----------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccch--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 0011333333334444444555555667777766 7788 777776544 4566677766643
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-08 Score=95.79 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=87.1
Q ss_pred HHHHhCCCchhhHHHHhhhh-hhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHH--hhccccccccCCCCC
Q 012666 57 YVQELGIPHAWASIIWLCGP-VSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI--GLSADIGWLLGDRGD 133 (458)
Q Consensus 57 ~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 133 (458)
+.+++|+++.+.+++..... ++..++.++.|++.| |+||||.+........+...... ...++.
T Consensus 236 l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~----r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~--------- 302 (402)
T PRK11902 236 LIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMV----RLGLYRSLMLFGVLQAVSNLGYWVLAVTPKH--------- 302 (402)
T ss_pred HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------
Confidence 44779999999999876544 457888999999999 99998877654443332222221 222110
Q ss_pred CCchhHHHHHHHH----HHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccc
Q 012666 134 FRPRAIAVFVFGF----WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209 (458)
Q Consensus 134 ~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~ 209 (458)
.+.+.+.. +..+++.+...+....++.+.+|.++++ . .+...++|..+++.++|.+....
T Consensus 303 -----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~G~l~~~~----- 366 (402)
T PRK11902 303 -----LWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA--L----LSALASVGRVYVGPTSGYLVEAY----- 366 (402)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 13333333 2344555555666666777776655544 3 44444566655555555533222
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHH
Q 012666 210 LTSACNVDCANLKSAFFLDVIFIAITTCIS 239 (458)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (458)
||+..|.+.+++.++..++.
T Consensus 367 ----------G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 367 ----------GWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred ----------ChHHHHHHHHHHHHHHHHHH
Confidence 88888888887776665554
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.1e-08 Score=86.95 Aligned_cols=137 Identities=8% Similarity=0.038 Sum_probs=92.0
Q ss_pred hhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHh
Q 012666 74 CGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVAN 153 (458)
Q Consensus 74 ~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 153 (458)
+..+....+.++.+++.| |+|||+.+....++ +.+..+....+.+- .....+++.++ ++.
T Consensus 389 itslaefPGlLIt~~ive----rlGRKkTMal~l~~-f~iflfll~~c~~r-----------n~~tvllf~ar----afi 448 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVE----RLGRKKTMALSLIL-FGIFLFLLTTCKTR-----------NAYTVLLFTAR----AFI 448 (528)
T ss_pred HHHHhhCCchhHHHHHHH----HhcchhHHHHHHHH-HHHHHHHHHHhcCc-----------chhHHHHHHHH----HHH
Confidence 455667788889999999 99999998774443 44444433333221 11123334444 445
Q ss_pred hhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHH
Q 012666 154 NMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIA 233 (458)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (458)
++.+...++|.+|.+|...|+ .+.|..+....+|+++.|.++-.... .-.....+.+.+++
T Consensus 449 sg~fqvaYvYtPEVyPTavRa--tgvGtcSsmaRIggI~~p~iA~~~e~-----------------s~sl~i~vy~~~~i 509 (528)
T KOG0253|consen 449 SGAFQVAYVYTPEVYPTAVRA--TGVGTCSSMARIGGIFSPVIAMRAEL-----------------STSLPIFVYGALFI 509 (528)
T ss_pred hchheEEEEecCcccchhhhh--cchhhhhhHHhhhhhhhhHHHHHhcc-----------------ceeehHHHHHHHHH
Confidence 566677789999999999999 88999999999999999988732221 22233556666666
Q ss_pred HHHHHHHhccccCCCC
Q 012666 234 ITTCISASAAHEVPLG 249 (458)
Q Consensus 234 ~~~~~~~~~~~e~~~~ 249 (458)
+..+...++.-|++.+
T Consensus 510 lagIavcffPiEtkGR 525 (528)
T KOG0253|consen 510 LAGIAVCFFPIETKGR 525 (528)
T ss_pred HHHHHheeeeeccCCC
Confidence 7777776665566543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.6e-09 Score=97.18 Aligned_cols=134 Identities=21% Similarity=0.291 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHhCCC-chhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHh
Q 012666 42 GIQFGWALQLSLLTPY-VQELGIP-HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (458)
Q Consensus 42 ~~~~~~~~~~~~l~~~-~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (458)
...+.......++|.| .+++|.+ ..+.+.+.++..+...++.++.|+++| |+|+|+.......... +......
T Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~-~~~~~~~ 291 (352)
T PF07690_consen 217 LFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSD----RFGRRRRLLIAILLLI-LGALGLL 291 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHH-HHHHHHC
T ss_pred HHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCcHHHHHHHHHHHH-HHHHHHH
Confidence 3334566677888888 5889999 789999999999999999999999999 9998777666444433 3333332
Q ss_pred hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHH
Q 012666 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (458)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (458)
..... .......+...+.|++.+...+...+++.|..|+++|+ ++.++.+...++|..+||
T Consensus 292 ~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 292 LLPFS------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRG--TAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CSHHH------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHCC
Confidence 22211 11244555677788888889999999999999999999 999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-08 Score=95.10 Aligned_cols=146 Identities=9% Similarity=0.064 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhce-eccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hcC
Q 012666 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGRE-IYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGA 361 (458)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~ 361 (458)
|+.++.++...++..++++....+.+.|+.++ .++.+. .........+.+...++.+++|+++|| +||
T Consensus 9 p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~----------~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~ 78 (475)
T TIGR00924 9 PKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQ----------EQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78 (475)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCH----------HHHHHHHHHHHHHHHHHHhhHHHHHHhhcch
Confidence 46777787788887888888888888888532 022221 122233444677788999999999999 899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccc-cccch
Q 012666 362 GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG-LGQGL 440 (458)
Q Consensus 362 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 440 (458)
|+++.++.++.+++.+++.+.. +.+.+.+...+.|++.+...+...++++|.+|+++ ++++.
T Consensus 79 ~~~l~~~~~~~~~g~~~~~~~~-----------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~ 141 (475)
T TIGR00924 79 KKTMVLGGIVLMLGHFMLAMSI-----------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDG 141 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-----------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccc
Confidence 9999999999999888777652 34455566677888888888888899999998743 34777
Q ss_pred hhhHHHHHHHhhhhhc
Q 012666 441 SLGVLNLAIVIPQVSS 456 (458)
Q Consensus 441 ~~g~~~~~~~~~~~i~ 456 (458)
+.++++...++|..++
T Consensus 142 ~~~~~~~~~niG~~ig 157 (475)
T TIGR00924 142 GFTLFYMSINIGSFIS 157 (475)
T ss_pred eehhHHHHHHHHHHHH
Confidence 8888888888887765
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.1e-08 Score=88.93 Aligned_cols=143 Identities=12% Similarity=0.011 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYVQE---LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
..+......+...........+.+.|+++ +|+++.+.+...+.+..+..++..+.++++| |+|+||.+.+..
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~----r~g~~~~l~~~~- 215 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMP----MISQGRYLAFNA- 215 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCHHHHHHHHH-
Confidence 34443344444433556667788888854 5899999999999999999999999999999 999988776543
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
....+...+....++ ........+.|++.+..+|...+...+..|++ .+ .+.++. ....+
T Consensus 216 ~l~~~~~~l~~~~~~----------------~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~--~asai~-~~~~~ 275 (310)
T TIGR01272 216 FLAVLLSIGAALTHG----------------YVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TS--QGSGIL-CLAIV 275 (310)
T ss_pred HHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hh--hhHHHH-HHHHh
Confidence 333343333322222 11223455678899999999998888888754 34 455654 45668
Q ss_pred HHHHHHhhhcc
Q 012666 189 GNILGYATGSF 199 (458)
Q Consensus 189 g~~ig~~~~~~ 199 (458)
|..+.|.+.|.
T Consensus 276 Gg~i~P~l~G~ 286 (310)
T TIGR01272 276 GGAIVPLLQGS 286 (310)
T ss_pred cchHHHHHHHH
Confidence 88888887665
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.8e-08 Score=95.43 Aligned_cols=146 Identities=10% Similarity=0.049 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCh
Q 012666 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAG 362 (458)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r 362 (458)
||.++.++...+...++++.+..+...|+.++ ++.+.. ........+.....+..+++|+++|| +|||
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-lg~~~~----------~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r 81 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQ-LGFSQE----------QAFITFGAFAALVYGLISIGGYVGDHLLGTK 81 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH----------HHHHHHHHHHHHHHHHHhhHHHhhhhccchH
Confidence 47788888888888888888888888888543 222221 11122222344455666799999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhh
Q 012666 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 442 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 442 (458)
+++..+.++.+++.+...+.. . ....+++...+.+++.+...+...+++.|.+|+++++++..+
T Consensus 82 ~~~~~g~~~~~~g~~~~~~~~--------------~--~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~ 145 (489)
T PRK10207 82 RTIVLGAIVLAIGYFMTGMSL--------------L--KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAF 145 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------c--chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcch
Confidence 999999999999888777652 1 122244566677888888888889999999998655667778
Q ss_pred hHHHHHHHhhhhhc
Q 012666 443 GVLNLAIVIPQVSS 456 (458)
Q Consensus 443 g~~~~~~~~~~~i~ 456 (458)
+++....++|..++
T Consensus 146 ~~~~~~~nig~~~g 159 (489)
T PRK10207 146 TLFYMSINIGSLIS 159 (489)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888877665
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.1e-08 Score=93.31 Aligned_cols=143 Identities=10% Similarity=0.074 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhh-hhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGP-VSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
.+......+...+.......+.|++.+++|.++.+.+.+..+.. +...++.+++|+++| |+||||.++....+ .
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~----r~g~~~~l~~~~~~-~ 285 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQ----PLNILYALLLFGIV-Q 285 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHH-H
Confidence 33333344444566667778889998889999999998887655 567788999999999 99998887764544 3
Q ss_pred HHHHHHHhhc-cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHH
Q 012666 112 AVAVLLIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (458)
Q Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (458)
.+...+..+. .+... . +......+.+.....+.+++.+...+...+++.|.+|+++|+ +.+++.+...+
T Consensus 286 ~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~ 355 (356)
T TIGR00901 286 ALTNAGFVWLASNGHH----D-GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGA--TQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHhcCcc----c-ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHh
Confidence 3443333222 11000 0 000012255666677778999999999999999999999999 88888776554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-08 Score=94.80 Aligned_cols=148 Identities=24% Similarity=0.243 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
+....+....+...++........+.+.++ +|.+ ...+.+..+..+...++.+++++++| |+|+||.+..+..+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~----r~gk~~~~~~~~~~ 299 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSK----RFGKKKVYIIGLLL 299 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHH----HccceeehhhhHHH
Confidence 334444445555556666666677777755 4544 67788888899999999999999999 99999988875544
Q ss_pred HHHHHHHHHhhcc--ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccc-----cchhhhhhHHH
Q 012666 110 SIAVAVLLIGLSA--DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD-----HRRTRVANAYF 182 (458)
Q Consensus 110 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~ 182 (458)
.+.+.+...+.+ +. +..++...+.|++.+.......++++|..+.+ +|..|...+..
T Consensus 300 -~~~~~~~~~~~~~~~~---------------~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~ 363 (428)
T PF13347_consen 300 -AALGFLLLFFLGPGSP---------------WLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVN 363 (428)
T ss_pred -HHHHHHHHHHHHhhhH---------------HHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhh
Confidence 444444444443 43 77778888899999999999999999998743 23344889999
Q ss_pred HHHHHHHHHHHHhhhcc
Q 012666 183 SLFMAVGNILGYATGSF 199 (458)
Q Consensus 183 ~~~~~~g~~ig~~~~~~ 199 (458)
+....+|..+++.+.+.
T Consensus 364 ~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 364 SFFIKIGQGLAGAIVGL 380 (428)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 99999999998887776
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.4e-08 Score=105.38 Aligned_cols=159 Identities=14% Similarity=-0.043 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (458)
...+..+...+.......++|.|.+ .+|.+..+.|++.+...++..++.++.|+++| |.++++.+..+.++..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~----~~~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 229 LAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSE----GRITLLYVPIGALLMGLF 304 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC----CceeeeeehHHHHHHHHH
Confidence 3333333444455566678888884 58999999999999999999999999999999 777766555433333332
Q ss_pred HHHHHhhc-cc-c---ccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 114 AVLLIGLS-AD-I---GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 114 ~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
.+.+. +. .. . ..+..-..-......+.+.+..++.|++.+...++..+++.+.+|++.|| +++|..++...+
T Consensus 305 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G--~v~g~~~~~~~~ 381 (1140)
T PRK06814 305 GLDLA-FASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRA--RVIAANNVLNAA 381 (1140)
T ss_pred HHHHH-hcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccce--eeeHHHHHHHHH
Confidence 32222 21 00 0 00000000000012255667777788888888889999999999999999 999999999999
Q ss_pred HHHHHHhhhccc
Q 012666 189 GNILGYATGSFS 200 (458)
Q Consensus 189 g~~ig~~~~~~~ 200 (458)
|..+++.+.+.+
T Consensus 382 ~~~ig~~~~g~l 393 (1140)
T PRK06814 382 FMVAGTIILALL 393 (1140)
T ss_pred HHHHHHHHHHHH
Confidence 999999887763
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=82.86 Aligned_cols=133 Identities=13% Similarity=0.089 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 47 ~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
.+.+..|-|.+.+++|+|.+|...+.....++..+ .++.|.+.| |+|.|.++++ +.....+++......-+.
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d----~~gp~~~l~i-G~~~~~~GY~~~~l~~~~-- 89 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYD----RFGPWVVLLI-GAVLGFVGYGLLWLAVSG-- 89 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHH----hcchHHHHHH-HHHHHHHHHHHHHHHHhC--
Confidence 34455677888899999999999999999998876 588899999 9999777666 556677777766554332
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Q 012666 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (458)
.......+.+.+...+.+.+.+....+......+.+| ++|| ++.|+.-...++++.+-..+
T Consensus 90 ------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG--~vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 90 ------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRG--TVVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred ------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccC--ceehhhhHHHHhHHHHHHHH
Confidence 2222345666666666667766666777777778998 5799 99999999999988776555
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.5e-08 Score=95.76 Aligned_cols=145 Identities=15% Similarity=0.147 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHH
Q 012666 37 ASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (458)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (458)
....+...+.......++|.+.+ .+|.++.+.++......++..++.++.|++.| |+|||+.+.. +.....++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~-g~~~~~~~~ 335 (485)
T TIGR00711 261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD----KIDPRKLVTI-GLILYAVGF 335 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCcHHHHHH-HHHHHHHHH
Confidence 33334444555556677888885 48999999999999999999999999999999 9999887666 444444444
Q ss_pred HHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHh
Q 012666 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (458)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (458)
..+.+..+. ....+.......+.|++.+...++......+..|+++|+ .+.++.+....+|..+|+.
T Consensus 336 ~~~~~~~~~-----------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~ig~~ 402 (485)
T TIGR00711 336 YWRAFTFTP-----------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIA--RGSSLSNFTRQLGGSIGTA 402 (485)
T ss_pred HHHhccCCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHh--HHHHHHHHHHHHHHHHHHH
Confidence 444311110 111234445567778888887777777888889999999 9999999999999999988
Q ss_pred hhcc
Q 012666 196 TGSF 199 (458)
Q Consensus 196 ~~~~ 199 (458)
+.+.
T Consensus 403 i~g~ 406 (485)
T TIGR00711 403 LITT 406 (485)
T ss_pred HHHH
Confidence 8654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-06 Score=86.97 Aligned_cols=168 Identities=11% Similarity=0.122 Sum_probs=112.9
Q ss_pred HHHHH-HHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCC
Q 012666 53 LLTPY-VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (458)
Q Consensus 53 ~l~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (458)
.+..| .+.+|.+...+..+...+....-+...++|+++|+ ++||+|.+++++++ ..++..++.+.....
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~---~lG~~~tIl~~~ii-~~lG~~llai~a~~~------ 78 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADG---WLGKFKTILYLSIV-YVVGHALLSFGAIPS------ 78 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHH-HHHHHHHHHhccCcc------
Confidence 33444 46789999988888888888888899999999996 78999988875544 445555544432110
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccccc---chhhhhhHHHHHHHHHHHHHHHhhhccccccccccc
Q 012666 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH---RRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 208 (458)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~ 208 (458)
..........+++..+..+|.+..-+...+...|.+++++ |. ....+.....++|.+++..+.+.+
T Consensus 79 -~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~--s~F~~fY~~iNiGSlis~~i~~~l-------- 147 (654)
T TIGR00926 79 -SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRS--RFFSFFYFAINAGSLISTIITPIL-------- 147 (654)
T ss_pred -cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 0111222345567777778999999999999999997643 34 677888888888888887775442
Q ss_pred cccccc-cccccchhhHHHHHHHHHHHHHHHHHhc
Q 012666 209 TLTSAC-NVDCANLKSAFFLDVIFIAITTCISASA 242 (458)
Q Consensus 209 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (458)
..... .....+|...|.+.+++.++..++....
T Consensus 148 -~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 148 -RGDVGCFGCQDCYPLAFGVPAILMILALIVFMAG 181 (654)
T ss_pred -HHhhcccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 11100 0001268889998888877776655443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=90.46 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=74.0
Q ss_pred HHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccC
Q 012666 51 LSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (458)
Q Consensus 51 ~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (458)
..+.|.+. +++|.++.+.+.+.+...+...++.++.|++.| |+|||+.++... .....+.....+.++.
T Consensus 223 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~----r~g~~~~~~~~~-~~~~~~~~~~~~~~~~----- 292 (392)
T PRK10473 223 VNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALG----IFKPRTLMLTSQ-VLFLAAGITLALSPSH----- 292 (392)
T ss_pred HHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHH-HHHHHHHHHHHHHHHH-----
Confidence 34456555 678999999999999999999999999999999 999988877644 4444444444443322
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 012666 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (458)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (458)
........+.+.+.+...+. ....+..|.++|+ +.+.+.......+|..+++.+.
T Consensus 293 ----------~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~~~l~ 347 (392)
T PRK10473 293 ----------AVSLFGITLICAGFSVGFGV--AMSQALGPFSLRA-GVASSTLGIAQVCGSSLWIWLA 347 (392)
T ss_pred ----------HHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333332222 2334455544443 2566655555555555555553
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-07 Score=86.45 Aligned_cols=186 Identities=10% Similarity=0.085 Sum_probs=134.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhH
Q 012666 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQE----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (458)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~ 104 (458)
+.++.|.+.+...+....+.......+.|... -+.++...|.++++..+..++.-.+..++.+ |+|.|+.++
T Consensus 218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~----rig~k~~Ll 293 (412)
T PF01306_consen 218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLIN----RIGAKNLLL 293 (412)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHH----hcChHhHHH
Confidence 34555655555555444445444445555543 3344567899999999999999999999999 999999988
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHH-HH
Q 012666 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FS 183 (458)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~ 183 (458)
+.+ ..+.+=....+++++. +.+.+...+.++-.........-++.+.+|+|... +...+ .+
T Consensus 294 lag-~i~~iRi~~~~~~~~~---------------~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsA--t~y~v~~~ 355 (412)
T PF01306_consen 294 LAG-VIMAIRIIGSGFATNP---------------WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSA--TLYLVGFQ 355 (412)
T ss_dssp HHH-HHHHHHHHHHHT--SH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHH--HHHHHHHT
T ss_pred HHH-HHHHHHHHHHhhhcch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHH--HHHHHHHH
Confidence 855 4466777777777776 88889999999999999999999999999988877 56655 46
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 012666 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (458)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (458)
...++|..+.+.++|.+.+.. |.+.+|++.+.+.++..++..+.++++++...
T Consensus 356 ~~~~~~~~i~s~~~G~lyd~~---------------G~~~tylimg~iv~~~~li~~f~l~~~~~~~~ 408 (412)
T PF01306_consen 356 FAKQIGIIILSPLAGYLYDRI---------------GFQHTYLIMGLIVLPFTLISAFTLKKDKKQIV 408 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHS--SSSTTC
T ss_pred HHHHHHHHHHhhhHHhhHhhc---------------CcHHHHHHHHHHHHHHHHHheeeecCCCcccc
Confidence 778888888888877744333 78889999998888888888888876655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.8e-08 Score=90.91 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 46 GWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 46 ~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
.......+.|.+. +++|.++.+.+.+.+...++..++.++.|+++| |+|||+.+.... ....++..........
T Consensus 221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 295 (385)
T TIGR00710 221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIK----KWGAKSLLRMGL-ILFAVSAVLLEITAIL 295 (385)
T ss_pred HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 3344455667766 578999999999999999999999999999999 999988776643 3333333333222110
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH-HHHHHHhhh
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV-GNILGYATG 197 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-g~~ig~~~~ 197 (458)
.............+.+++.+...+.......|..| ++|+ ++.++.+..... |.+.++.++
T Consensus 296 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 296 ----------GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAG--TASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred ----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 00112334445566778888888888888888876 5788 888887766654 555555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.6e-07 Score=85.04 Aligned_cols=98 Identities=14% Similarity=-0.057 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHh
Q 012666 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (458)
Q Consensus 341 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (458)
.-.+.++.-++.+++.+|+|+-+++..++.+..+-++.+.... ++|..+..-++-|+..+.++
T Consensus 415 ~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-----------------n~W~vLPieilqgit~aliW 477 (618)
T KOG3762|consen 415 CHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-----------------NPWMVLPIEILQGITHALIW 477 (618)
T ss_pred hccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc-----------------CchheeeHHHHHHHHHHHHH
Confidence 3445567778889999999999999999999999998888875 67888889999999999999
Q ss_pred hchhHhHHhhhcccccccchhhhHHHH-----HHHhhhhhcC
Q 012666 421 SVPYALVSIRTESLGLGQGLSLGVLNL-----AIVIPQVSSC 457 (458)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~g~~~g~~~~-----~~~~~~~i~~ 457 (458)
...-++++...|+ +.+.++.|+... ...+|.+|++
T Consensus 478 aa~~sY~s~vaPp--~l~at~Q~l~~g~f~GlG~g~GslIGG 517 (618)
T KOG3762|consen 478 AAIISYASHVAPP--GLRATAQGLLQGIFHGLGKGLGSLIGG 517 (618)
T ss_pred HHHHHHHHhhCCC--cchHHHHHHHHHHhcccCcchhhhhhh
Confidence 9999999999999 667666666543 2344555543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.1e-07 Score=86.14 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=93.5
Q ss_pred HHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccccc
Q 012666 50 QLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (458)
Q Consensus 50 ~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (458)
....++.+. +.+|.++.+.|++.+...++..+++++.+++.| |.++|+.+.. +.... .......+.++.
T Consensus 224 ~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~----~~~~~~~~~~-g~~~~-~~~~~~~~~~~~---- 293 (393)
T PRK11195 224 LRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVT----LETVLRVLPA-GILMG-LVVLLMALQHSL---- 293 (393)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccchHHH-HHHHH-HHHHHHHHHhHH----
Confidence 334555665 558999999999999999999999999999999 8888876655 33322 222222233332
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccccc-chhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH-RRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
+...+...+.|++.+...++..+.+.|..|++. ++ ++.++.+...++|..++..+.+.
T Consensus 294 -----------~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g--~~~a~~~~~~~~~~~~~~~~~~~ 352 (393)
T PRK11195 294 -----------LPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAG--HSIAVQNFNENLAMLLMLGLYSL 352 (393)
T ss_pred -----------HHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccch--hHHHHHhHHHHHHHHHHHHHHHH
Confidence 445566667788888888888888888766554 67 89999999999999999888665
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.7e-06 Score=77.94 Aligned_cols=309 Identities=14% Similarity=0.037 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CchhhHHHHhhhhhhhhhh-ccccceeccccCCcCCCcchh
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGI-----PHAWASIIWLCGPVSGLFV-QPLVGHFSDRCTSRFGRRRPF 103 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----s~~~~~~~~~~~~~~~~~~-~~~~G~l~D~~~~r~Grr~~~ 103 (458)
.++++......++..+.++ .+-+.-+.+.+ +.+.+.++-+...+...+. .++.+++++ |++|++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~----~~~~~~lf 77 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSN----ILSKEALF 77 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHhH
Confidence 4555555555555544444 34455566655 3457788888776766665 889999999 99999887
Q ss_pred HHHHHHHHHHHHHHHhh--ccccccccCCC-----CCCCch---------hHHHHHHHHHHHHHHhhhcch-hhHHHHhh
Q 012666 104 IVCGAISIAVAVLLIGL--SADIGWLLGDR-----GDFRPR---------AIAVFVFGFWILDVANNMTQG-PCRALLAD 166 (458)
Q Consensus 104 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~---------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 166 (458)
-........ .+.++.+ -|+......+. ...... ..|...+......+-.....+ ..+++.+|
T Consensus 78 ~~~~~~F~~-~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 78 YTVISPFLG-FFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHHHHH-HHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 664433222 2222221 12211100000 000000 112233333334444455555 77899999
Q ss_pred hcccccchhhhhhHHHHHHHHHHHHHHHhhhcccc-ccccccccccccccccccchh----hHHHHHHHHHHHHHHHHHh
Q 012666 167 LTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG-WFKILPFTLTSACNVDCANLK----SAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 167 ~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 241 (458)
.++.++-. |..++.+.+.++|.++++.+..... ....++... +.|. ..+.+.++...+...+. .
T Consensus 157 i~t~~qak--Rfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~i~~~~~~~~~~~~-~ 225 (472)
T TIGR00769 157 ITTIDEAK--RFYALFGLGANVALIFSGRTIKYFSKLRASLGPGV--------DGWHVSLKNLMVIVICSGLAIILLY-W 225 (472)
T ss_pred cCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--------ChHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 99998888 8999999999999999998765522 111111100 1231 23333333333333333 3
Q ss_pred ccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCC
Q 012666 242 AAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEP 321 (458)
Q Consensus 242 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
.+.+....+++..+.+ +++++++++.+....++..++. |.++.+++...++..+...+..-.-..+ .+.+ .++
T Consensus 226 ~l~~~~~~~~~~~~~~---~~~~k~k~k~~~~es~k~i~~S--~yL~~ia~~vi~y~~~~nlve~~~k~~v-~~~~-p~~ 298 (472)
T TIGR00769 226 WVNRNVLTDPRSYNPA---LKEKKVKPKMSTMESLKFLVSS--PYILDLALLVIAYGISINLVEVTWKSKL-KAQY-PSP 298 (472)
T ss_pred HHHhcccCCccccchh---hccccCCCCCCHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC-CCH
Confidence 3322211111100001 1111112223334455556666 7777776666666555444332222222 1222 122
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Q 012666 322 NEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 371 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 371 (458)
.+... -.+.+.. ..++..++..++.+++.+|+|-+....+.=++
T Consensus 299 ~~~~~-----f~g~~~~-~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii 342 (472)
T TIGR00769 299 NEYSA-----FMGDFST-WTGVVSVTMMLLSGNVIRKYGWLTAALITPLV 342 (472)
T ss_pred HHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11101 1122222 23444455666669999999988766543333
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.8e-07 Score=88.03 Aligned_cols=146 Identities=10% Similarity=0.053 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCh
Q 012666 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAG 362 (458)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r 362 (458)
|+.++.++...+...++++.+..+.+.|+.+. ++.++. ........+.....++.+++|+++||+ |||
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-lgls~~----------~a~~i~~~~~~~~~l~~ligG~LaDRilGrr 76 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-LKYDDN----------HAYELFSAYCSLVYVTPILGGFLADKVLGNR 76 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence 46777777777777788888888888888543 232221 112223335566678889999999999 999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhh
Q 012666 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 442 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 442 (458)
+.+.++.++.+++.+++.... . ......+...+..++.+...+...+++.|.+|+++++|+...
T Consensus 77 r~iliG~il~~lg~lll~~~~--------------~--~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf 140 (493)
T PRK15462 77 MAVMLGALLMAIGHVVLGASE--------------I--HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGF 140 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------c--chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccccee
Confidence 999999998888876554321 0 111223333344455666666677899999998544677778
Q ss_pred hHHHHHHHhhhhhc
Q 012666 443 GVLNLAIVIPQVSS 456 (458)
Q Consensus 443 g~~~~~~~~~~~i~ 456 (458)
++.....++|..++
T Consensus 141 ~i~Y~~~nlG~~ia 154 (493)
T PRK15462 141 SLMYAAGNVGSIIA 154 (493)
T ss_pred hHHHHHHHHHHHHH
Confidence 88777777776654
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=87.43 Aligned_cols=196 Identities=13% Similarity=0.055 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHH--------HHhhh-hhhhhhhccccceeccccCCcCCCcch
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASI--------IWLCG-PVSGLFVQPLVGHFSDRCTSRFGRRRP 102 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~--------~~~~~-~~~~~~~~~~~G~l~D~~~~r~Grr~~ 102 (458)
+++..+..+|...+.++....+...+++.+|..+..... ...+. ......+.++..+++| ++|||+.
T Consensus 305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id----~iGRk~i 380 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFID----IIGRKYI 380 (538)
T ss_pred HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEee----hhhhHHH
Confidence 345566677777777777777888888888776543332 11122 2223346677788999 9999988
Q ss_pred hHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHH
Q 012666 103 FIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 182 (458)
.+. +..++.+..+.++...+. . .........+.+..++ +.-+.......+.+|.+|.+.|+ ...|+.
T Consensus 381 q~~-GF~~~~i~~~~~~~~y~~--~-----~~~~Gf~v~y~l~~ff---~NFGPn~ttfivpaE~FParvR~--t~hGIs 447 (538)
T KOG0252|consen 381 QLM-GFFIMTIFFFVIAGPYNQ--L-----ENTIGFVVLYSLTFFF---GNFGPNATTFIVPAEIFPARVRS--TCHGIS 447 (538)
T ss_pred HHh-hHHHHHHHHHHHcCCccc--c-----cccCceeehHHHHHHH---HhcCCCceeEEeehhhchHHHhh--hhhhHH
Confidence 877 555555555555455441 0 1112222222233322 22234445567788999999999 999999
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCC
Q 012666 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSA 255 (458)
Q Consensus 183 ~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 255 (458)
.+..-+|+++|...-..+......| ..+.+..+++.+.+.++..+.. +++||++.++.++..
T Consensus 448 AA~GK~GAivg~~~F~~~t~~~yp~----------~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~ 509 (538)
T KOG0252|consen 448 AASGKAGAIVGAFGFLYLTDHNYPP----------NIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEIS 509 (538)
T ss_pred HHhccchHHHHHHHhhHhhhccCCc----------cccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhc
Confidence 9999999999987744322211111 1378889999998887776665 556788877665543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.2e-07 Score=84.79 Aligned_cols=135 Identities=10% Similarity=-0.033 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 012666 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (458)
Q Consensus 47 ~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
......+.|.+.++.|.+..+.++......++..++..+.+++.| |+|+|+..........+.......... .
T Consensus 219 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~----r~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 291 (401)
T PRK11043 219 FFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQ----KWGGEQLLPWLLVLFAVSVIAIWLASL-L-- 291 (401)
T ss_pred HHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCHHHHHHHHHHHHHHHHHHHHHHHH-h--
Confidence 334455678888889999999998887777788888888889999 999888654422222222111111110 0
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
.. ...+..++...+.+++.+...+...+...|..| ++++ ++.++.+.....+...++.+.+.
T Consensus 292 ------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~~~~~~~~~~~~~g~ 353 (401)
T PRK11043 292 ------SH--PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATG--KAAALQNTLQLGLCFLASLLVSA 353 (401)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccCh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011334445556677777778877777777776 5788 89999998877777777776554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=90.64 Aligned_cols=130 Identities=12% Similarity=0.094 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHH-H-HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcc
Q 012666 45 FGWALQLSLLTPYV-Q-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (458)
Q Consensus 45 ~~~~~~~~~l~~~~-~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (458)
........+.+.++ + .+|+++.+.++....+.++..++.++.|++.| |+||||.+.....+ .+..+.+..+.+
T Consensus 272 ~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~----r~g~~~~l~~~~~~-~~~~~~~~~~~~ 346 (438)
T PRK10133 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS----RFAPHKVLAAYALI-AMALCLISAFAG 346 (438)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 33344445667664 4 57999999999999999999999999999999 99999987764433 333333332322
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
+ ...+....+.+++.+..+|...+...|..|++ .+ .+.++... ..+|..+++.+.+.
T Consensus 347 ~----------------~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~--~as~l~~~-~~~g~~~~~~i~G~ 403 (438)
T PRK10133 347 G----------------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIVM-TIIGGGIVTPVMGF 403 (438)
T ss_pred C----------------hHHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hc--cchhHHhH-HhccchHHHHHHHH
Confidence 2 11234566788999999999999999988754 45 56666654 44566666666555
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.4e-08 Score=96.06 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
+.......+.............|.+.+ .+|.++...++......+...++.++.++++| |+|+|+.+.++ .++.
T Consensus 230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----r~g~~~~~~~g-~~~~ 304 (448)
T PRK09848 230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVA----RIGKKNTFLIG-ALLG 304 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHH-HHHH
Confidence 333333333334444444455565654 46766555555444445667788999999999 99999888774 4444
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccccc-------chhhhhhHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH-------RRTRVANAYFSL 184 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~ 184 (458)
+++.+.+.+.+. ...+...+...+.++|.+...+...++..|..|.++ +| ...+..+.
T Consensus 305 ~i~~~~~~~~~~-------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G--~~~~~~~~ 369 (448)
T PRK09848 305 TCGYLLFFWVSV-------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG--LTYSLFSF 369 (448)
T ss_pred HHHHHHHHHcCc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh--HHHHHHHH
Confidence 444444433221 112445556667788888888888999999887542 35 88899999
Q ss_pred HHHHHHHHHHhhhcc
Q 012666 185 FMAVGNILGYATGSF 199 (458)
Q Consensus 185 ~~~~g~~ig~~~~~~ 199 (458)
...+|..+|+.+.+.
T Consensus 370 ~~klg~aig~~i~g~ 384 (448)
T PRK09848 370 TRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888776
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-08 Score=96.42 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
.+..+....+...........+.+.+.+....+....+.+..+..+...++.+++++++| |+|+|+.++.... ..
T Consensus 232 ~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~----r~gkk~~~~~~~~-~~ 306 (473)
T PRK10429 232 QLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVK----SLSRRILWAGASI-FP 306 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCcHHHHHHHHH-HH
Confidence 334444444444455555555555555554445566677777777888899999999999 9999998876443 33
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccc-----ccchhhhhhHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-----DHRRTRVANAYFSLFM 186 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~ 186 (458)
+++.+......-. . ....+.+++...+.+++.+...+...++++|..+. .+|..|...+...+..
T Consensus 307 ~~~~~~~~~~~~~--------~--~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~ 376 (473)
T PRK10429 307 VLSCGVLLLMGLA--------A--PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVV 376 (473)
T ss_pred HHHHHHHHHHhcc--------C--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHH
Confidence 3333322211000 0 01124455566677888888888889999999663 3444446889999999
Q ss_pred HHHHHHHHhhhccc
Q 012666 187 AVGNILGYATGSFS 200 (458)
Q Consensus 187 ~~g~~ig~~~~~~~ 200 (458)
-+|..+++.+.|.+
T Consensus 377 K~~~al~~~i~g~~ 390 (473)
T PRK10429 377 KGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887773
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-07 Score=87.06 Aligned_cols=145 Identities=11% Similarity=0.048 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hcChh
Q 012666 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGF 363 (458)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~ 363 (458)
+.++..+...++..++++.+..+.+.|+.++ ++.+... .......+........+++|+++|| +|||+
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-lg~s~~~----------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~ 89 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-LGMSEAD----------SITLFSSFSALVYGLVAIGGWLGDKVLGTKR 89 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 5688888888888888888888888888533 3332221 1111111222233344689999999 59999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhh
Q 012666 364 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 443 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 443 (458)
.+..+.++.+++..++.+.. . ..+.+.+...+.|++.+...+...+++.|.+|+++++++...+
T Consensus 90 ~~~~g~~~~~ig~~l~~~~~--------------~--~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~ 153 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWSG--------------H--DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT 153 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhc--------------c--cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence 99999999888877776542 1 2334455566778888887788889999999875445555677
Q ss_pred HHHHHHHhhhhhc
Q 012666 444 VLNLAIVIPQVSS 456 (458)
Q Consensus 444 ~~~~~~~~~~~i~ 456 (458)
+++...++|..++
T Consensus 154 ~~~~~~~iG~~~g 166 (500)
T PRK09584 154 MYYMSINIGSFFS 166 (500)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-07 Score=73.16 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhh
Q 012666 342 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (458)
Q Consensus 342 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (458)
.++..++.++.+++.||+|||+.+..+.....++.+.....+ +.+...+...+.|++.+...+
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~ 70 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----------------NITVLIIARFLQGFGAAFALV 70 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999888888877777665543 456667778888998888888
Q ss_pred chhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 422 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
....+..|..|+ +.+++..++.+....+++.++.
T Consensus 71 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~ 104 (141)
T TIGR00880 71 AGAALIADIYPP--EERGVALGLMSAGIALGPLLGP 104 (141)
T ss_pred hHHHHHHHHCCh--hhhhHHHHHHHHhHHHHHHHhH
Confidence 899999999999 8899999999998888887653
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=91.26 Aligned_cols=146 Identities=14% Similarity=-0.009 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCc----CCCcchhHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR----FGRRRPFIV 105 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r----~Grr~~~~~ 105 (458)
++++..++..++.....+....++|.++++ .|.|..+.+.+...+.++++++.++.|+++| | ..+|.....
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsd----r~~~~~~~~~~~~~ 348 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSD----RLKTIFARRLLFIV 348 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHH
Confidence 346667777777777888888999999987 6699999999999999999999999999999 8 566666666
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHH
Q 012666 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (458)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (458)
...+....+...+...... ............+.....+.......+...++.|.. ...+.....
T Consensus 349 ~~~~~~~~g~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~-~~~~~~i~~ 412 (495)
T KOG2533|consen 349 FLCLYAIIGAISLLAAAVL---------------PGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKAL-TTVSAIIDG 412 (495)
T ss_pred HHHHHHHHHHHHHHhhccc---------------hHHhHHHHhcchhhHHHHHHHHhhccccccchHHhH-HHHhhhhcc
Confidence 5666666664544433222 112122222223444555666777888777666653 234444444
Q ss_pred HHHHHHHHHhh
Q 012666 186 MAVGNILGYAT 196 (458)
Q Consensus 186 ~~~g~~ig~~~ 196 (458)
.+.++.+++.+
T Consensus 413 ~~s~~~~~~~~ 423 (495)
T KOG2533|consen 413 TGSAGAISGQL 423 (495)
T ss_pred hhHHHHhhhhh
Confidence 55555554444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.3e-05 Score=68.91 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 401 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
+.|.+++..+.-|+.-|..+.-.+..+.|..|+ ++|-.++|....+-.+|-.+++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~--~~REFslg~vsvsds~GI~lAg 388 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPP--EDREFSLGAVSVSDSLGILLAG 388 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhHHHHHHH
Confidence 456677777788888888887788888888887 7888889998888888877764
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-06 Score=83.24 Aligned_cols=105 Identities=10% Similarity=-0.114 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhH
Q 012666 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (458)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (458)
+......++..+++++.|++.||+|||+.+..+.++.+++.+++.... ...+.+.+++..++.|++
T Consensus 42 ~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~--------------~~~~~~~~l~~~~l~G~g 107 (410)
T TIGR00885 42 LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA--------------EIMNYTLFLVGLFILTAG 107 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------------hhccHHHHHHHHHHHHhh
Confidence 334446777889999999999999999999999999999887765442 111456677778888999
Q ss_pred HHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
.+...+....++.+..|+ +++++..++.+....+|..++
T Consensus 108 ~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~~g 146 (410)
T TIGR00885 108 LGFLETAANPYILVMGPE--STATRRLNLAQSFNPFGSIIG 146 (410)
T ss_pred HHHHHhhhhHHHHHHCCH--hHHHHHHHHHHHHHHHHHHHH
Confidence 999998888899998888 778888888888888777665
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-06 Score=74.00 Aligned_cols=314 Identities=15% Similarity=0.177 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccccccc
Q 012666 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (458)
Q Consensus 49 ~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (458)
...+++-.+.+.+|+...++|.+.....-...+...+.|.++| |.|||+..+..++ ...++++.= .++++
T Consensus 55 LQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaD----kqGRKracvtyci-tYiLsCiTK-hSpqY---- 124 (454)
T KOG4332|consen 55 LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTYCI-TYILSCITK-HSPQY---- 124 (454)
T ss_pred hcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHh----hhccccceeeehH-HHHHHHHhh-cCCce----
Confidence 3334444445889999999999888888788888889999999 9999998776443 344444322 44444
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHH-HHhhhcccccchhhhhhHHHHH----HHHHHHHHHHhhhcc----
Q 012666 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRA-LLADLTGKDHRRTRVANAYFSL----FMAVGNILGYATGSF---- 199 (458)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~----~~~~g~~ig~~~~~~---- 199 (458)
-.+.++|.+-|+..+....+..+ ++.|... +|+ .-.-+... ...+|+-+-.+++|+
T Consensus 125 -----------kVLmVGR~LGGiaTsLLFSaFEsWliaEHne--kr~--FeqqWls~TFskA~ffgNglvAiiaGlfgn~ 189 (454)
T KOG4332|consen 125 -----------KVLMVGRVLGGIATSLLFSAFESWLIAEHNE--KRG--FEQQWLSVTFSKAVFFGNGLVAIIAGLFGNL 189 (454)
T ss_pred -----------EEEeehhhhhhHHHHHHHHHHHHHHHHHhhh--ccC--ChHhhhhHHHHHHHHhhccHHHHHHHHHHHH
Confidence 66779999999999988888865 4556542 333 11111111 112233222233322
Q ss_pred -ccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHHHHHH
Q 012666 200 -SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFG 278 (458)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (458)
.+|.. -|.-..|-..+.+..+...+.+-...|...++.++ ++..++.+.
T Consensus 190 lvd~~s--------------lGPVAPFdAAacfLaigmAvil~~W~ENygdps~~----------------kdlltqf~g 239 (454)
T KOG4332|consen 190 LVDTFS--------------LGPVAPFDAAACFLAIGMAVILSSWSENYGDPSEN----------------KDLLTQFKG 239 (454)
T ss_pred HHHHhc--------------cCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhh----------------HHHHHHhhH
Confidence 11211 13444555555555555444444444544332222 222222222
Q ss_pred HHhcc--hHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 012666 279 TFRYF--SGTIWIILIVTALTWLGWFPF-LLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (458)
Q Consensus 279 ~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 355 (458)
..+-. +++...+-....+.-...+.+ ..|.| ....++. +...| +....+.+++++++-+..++
T Consensus 240 aa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTP------aLspn~e---~iPhG-----fiFatFMlASmLGSSla~Rl 305 (454)
T KOG4332|consen 240 AARAIASDEKIALLGAIQSLFEGSMYTFVFLWTP------ALSPNDE---EIPHG-----FIFATFMLASMLGSSLASRL 305 (454)
T ss_pred hHHHHhcchHHHHHHHHHHHHhhhhheeeeeecc------cCCCCcc---cCCch-----hHHHHHHHHHHHhhHHHHHH
Confidence 11111 123222222222211111111 11111 1111111 11222 12222455666777777777
Q ss_pred HHhhcCh--hhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcc
Q 012666 356 CRKWGAG--FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (458)
Q Consensus 356 ~dr~g~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (458)
..|-..| ..+.+.+++....+.+........ |...++..-++.+.++-...|..+|...-+-.+..|+
T Consensus 306 ~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs----------P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPE 375 (454)
T KOG4332|consen 306 LSRSSPKVESYMQIVFLVSIAALLLPILTSSVS----------PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPE 375 (454)
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHHHHHhccC----------CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCH
Confidence 6654433 445566666666665555443221 3223344446667777777888888888888899998
Q ss_pred cccccchhhh
Q 012666 434 LGLGQGLSLG 443 (458)
Q Consensus 434 ~~~~~g~~~g 443 (458)
+.|.+.+-
T Consensus 376 --earstimN 383 (454)
T KOG4332|consen 376 --EARSTIMN 383 (454)
T ss_pred --HHHhhhhh
Confidence 55655443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=89.18 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=80.2
Q ss_pred hhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHH
Q 012666 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFG 145 (458)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (458)
...+.+.....+...++.+++++++| |+|+|+.+........+.........++ ..+.+.+.
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~----r~gk~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 325 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLG----KFDRVRAFKWTIVAFVILSALIFFIPPS--------------NVWLIFAL 325 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhChHHHHHHHHHHHHHHHHHHHHhCcc--------------hHHHHHHH
Confidence 34445555666777788889999999 9999998877443333333322222111 12455666
Q ss_pred HHHHHHHhhhcchhhHHHHhhhccccc-----chhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 146 FWILDVANNMTQGPCRALLADLTGKDH-----RRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-----r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
..+.+++.+...+...++++|..+.++ |..+...+..+....+|..+|+.+++..
T Consensus 326 ~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 326 NILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888988888889999999886322 2222678888888999999999988873
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-07 Score=88.21 Aligned_cols=126 Identities=20% Similarity=0.249 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccc
Q 012666 45 FGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (458)
Q Consensus 45 ~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~ 123 (458)
........+.|.+. +.+|.++.+.+.+..+..+...++.++.|+++| |+|||+.+...... ...+..+......
T Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~~~~~-~~~~~~~~~~~~~ 313 (366)
T TIGR00886 239 GSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISD----RLGGARKLLMSFLG-VAMGAFLVVLGLV 313 (366)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHH----hhccchhHHHHHHH-HHHHHHHHHhcCC
Confidence 34445566778887 557999999999999999999999999999999 99998877664333 3333333322111
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
. . .......+...+..++.+...+...+.+.|..| ++++ .+.|+.+...++|
T Consensus 314 ~--------~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~~~~g 365 (366)
T TIGR00886 314 S--------P---LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATG--AVSGLVGAIGNLG 365 (366)
T ss_pred C--------c---chHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcc--cHHHHHHHhccCC
Confidence 0 0 012333344444556666666777788888887 5788 8888877766554
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.6e-07 Score=85.07 Aligned_cols=163 Identities=12% Similarity=0.069 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHh
Q 012666 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (458)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (458)
.+...++.....+++--.+++++-.+...|.....-..+-.+.-++.+++.. |+||-+++.+ ++...+.=++.+.
T Consensus 380 av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~----kiGHv~v~~l-gLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 380 AVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIE----KIGHVNVMYL-GLACNVGRFLYYS 454 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHH----Hhcccceeee-hhhHHHHHHHHHH
Confidence 3344556666666776667999988888887777777777788888899999 9999888776 5555666666666
Q ss_pred hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHH-HHHHHHHHHHhhhc
Q 012666 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL-FMAVGNILGYATGS 198 (458)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~g~~ig~~~~~ 198 (458)
..+|. |+.+..-.+.|+..+..+.+..+|++...|++.|. .+.++... ..++|-.+|.++||
T Consensus 455 ~L~n~---------------W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~a--t~Q~l~~g~f~GlG~g~GslIGG 517 (618)
T KOG3762|consen 455 YLQNP---------------WMVLPIEILQGITHALIWAAIISYASHVAPPGLRA--TAQGLLQGIFHGLGKGLGSLIGG 517 (618)
T ss_pred HhcCc---------------hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchH--HHHHHHHHHhcccCcchhhhhhh
Confidence 66776 88888899999999999999999999999999999 77766554 56778888888888
Q ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHHH
Q 012666 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239 (458)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (458)
...... +-+..|.++++.+++.+++.
T Consensus 518 ~~v~~f---------------g~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 518 FVVERF---------------GARTTFRIFGIACLVTLALF 543 (618)
T ss_pred hhheee---------------hhHHHHHHHHHHHHHHHHHH
Confidence 754433 67777887776665555443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-07 Score=85.63 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHH
Q 012666 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (458)
Q Consensus 340 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (458)
...+...+.+++.|++.||+.|++++.+|..+..++.++-.+.. ..|.+.++-.+.|+|.+..
T Consensus 76 vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-----------------~Fwq~~l~R~~vGiGeAs~ 138 (493)
T KOG1330|consen 76 VFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-----------------HFWQVLLCRGFVGIGEASY 138 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhccchhhh
Confidence 35666778899999999999999999999999999998888875 5788999999999999999
Q ss_pred hhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
.++.+++++|.+|+ .+|++.+++++++..+|..++
T Consensus 139 ~~ia~s~IaD~f~~--~~Rs~~~~ify~~ipvGsglG 173 (493)
T KOG1330|consen 139 SPIAPSLIADSFPD--DKRSRVLGIFYFAIPVGSGLG 173 (493)
T ss_pred cccchhHhhhcCcc--hhhhHHHHHhhhhccccccee
Confidence 99999999999999 999999999999999987765
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-06 Score=80.20 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhH
Q 012666 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (458)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (458)
.....+.++..++.++.|+++||+|||+++..+.++.+++.++....+ +.+.+++.-++.|++
T Consensus 55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-----------------~~~~l~~~r~l~Gi~ 117 (413)
T PRK15403 55 ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT-----------------SMTQFLIARFIQGTS 117 (413)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHHH
Confidence 334445677788899999999999999999999888888887776653 456677777888887
Q ss_pred HHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
.+...+..+.++.|..|+ +++++.+++.+....++..++
T Consensus 118 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g 156 (413)
T PRK15403 118 ICFIATVGYVTVQEAFGQ--TKGIKLMAIITSIVLVAPIIG 156 (413)
T ss_pred HHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 776666677888899888 777888888777777666554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.8e-06 Score=77.82 Aligned_cols=134 Identities=12% Similarity=0.023 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 012666 47 WALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (458)
Q Consensus 47 ~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (458)
........+.+.++ +|.++.+.+++.....++..++.++.+++.| |++++.......................
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 296 (394)
T PRK11652 223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNK----RFSTLMWQSVICCLLAGLLMWIPGWFGV-- 296 (394)
T ss_pred HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 33444455666654 8999999999888888888888888888888 8874322222121111111111111000
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
...+.......+.+++.+...+...++..|..| ++++ .+.++.+....+|..+++.+++..
T Consensus 297 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 297 -----------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAG--TAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccch--HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 112445566677788888888888999999887 5678 889999999999999999887763
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-06 Score=81.17 Aligned_cols=158 Identities=14% Similarity=0.091 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH----hhcC
Q 012666 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR----KWGA 361 (458)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~ 361 (458)
++..++...+..++++.....+.+.|+. . ++.++ ...........+..++..++.|+++| |+||
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~-~-lg~~~----------~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR 72 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYVQ-E-LGIPH----------AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR 72 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-cCCCH----------HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC
Confidence 4444555566666777777777777763 2 22211 12223344567788889999999999 5999
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCC-CCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccc
Q 012666 362 GFIWGIS-NILMALCFLAMLILYYVAIHMDYRGHD-LPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (458)
Q Consensus 362 r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 439 (458)
|+.++.+ .....++++++.+.......-. +..+ .......+..++.+.+..++.....+...++++|.+|+++|+++
T Consensus 73 Rrp~il~g~~~~~~~l~ll~~~~~~~~~~~-~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~ 151 (477)
T TIGR01301 73 RRPFIAAGAALVAFAVILIGFAADIGHLFG-DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTR 151 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCchhhhhcc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHH
Confidence 9998764 5566666666655431100000 0000 00000112334444455667777777778999999999666678
Q ss_pred hhhhHHHHHHHhhhhhc
Q 012666 440 LSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 440 ~~~g~~~~~~~~~~~i~ 456 (458)
.+.++.+....+|+.++
T Consensus 152 ~a~~~~~~~~~lG~ilg 168 (477)
T TIGR01301 152 IANAYFSFFMAIGNVLG 168 (477)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999888888888775
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.4e-07 Score=62.92 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH
Q 012666 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
...+....+.+...+++|.+.++.|+|+.++|.+.++..+...+++|++|.++| |++|+|..+.....
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laD----k~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLAD----KFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCccHHHHHHHHH
Confidence 334444456677889999999999999999999999999999999999999999 99999988775443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=85.06 Aligned_cols=137 Identities=12% Similarity=0.061 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 012666 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (458)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (458)
...........+.+...-++...+.+...+.++..++.+++++++| |+|+|+.+........+...+.. +.++.
T Consensus 243 ~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~----r~gkk~~~~~~~~~~~~~~~~~~-~~~~~- 316 (460)
T PRK11462 243 AVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTD----WKCKVTIFWWTNALLAVISLAMF-FVPMQ- 316 (460)
T ss_pred HHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH----HhChHHHHHHHHHHHHHHHHHHH-Hhchh-
Confidence 3333333344444433223344556677777888889999999999 99998876654433333333322 22211
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccc-----cchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD-----HRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
......+...+.+++.+...+..+++++|..+.+ +|+.+...+.......+|..+++.+++..
T Consensus 317 ------------~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 317 ------------ASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122233344556666666666677888776622 44433556777788888998888887763
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.3e-07 Score=84.53 Aligned_cols=149 Identities=20% Similarity=0.291 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
+...+...+....+.+........|.+ .+|.++.+..+.......+..++.++..++++ |+|+|+.+.++..+ .
T Consensus 238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~----~~gkk~~~~~~~~~-~ 312 (467)
T COG2211 238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVK----KFGKKKLFLIGLLL-L 312 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhchHHHHHHHHHH-H
Confidence 344444444444455565666666654 36666666667777777777777899999999 99999999885544 5
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccc-----ccchhhhhhHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-----DHRRTRVANAYFSLFM 186 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~ 186 (458)
+++.+...+.+. ....+.++...+.+++.+...+..+++++|..+- .+|..|...+...++.
T Consensus 313 ~i~~~~~~f~~~-------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~ 379 (467)
T COG2211 313 AVGYLLLYFTPA-------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFR 379 (467)
T ss_pred HHHHHHHHhhcC-------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHH
Confidence 555555444431 1236677777888899999999999999988653 2354557888888888
Q ss_pred HHHHHHHHhhhcc
Q 012666 187 AVGNILGYATGSF 199 (458)
Q Consensus 187 ~~g~~ig~~~~~~ 199 (458)
-+|..++..+.++
T Consensus 380 K~g~ala~~~~g~ 392 (467)
T COG2211 380 KLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHHHHHHHH
Confidence 8999888877766
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-09 Score=103.53 Aligned_cols=174 Identities=12% Similarity=0.030 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHh--hcccc
Q 012666 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG--LSADI 124 (458)
Q Consensus 47 ~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~--~~~~~ 124 (458)
......+.+.+.++.+.+.. -.......+...++.++...+.| |+|||+.++.+... ..++...+. .....
T Consensus 269 ~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~GRr~~~i~~~~~-~~~~~~~~~~~~~~~~ 341 (451)
T PF00083_consen 269 INFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLID----RFGRRKLLIIGLLL-MAICSLILGIIFFLGV 341 (451)
T ss_pred cccccccccccccccccccc--ccccccccccccccccccccccc----cccccccccccccc-cccccccccccccccc
Confidence 34445566667777887776 22223444556667777779999 99999888774444 333333332 10000
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhh-hcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccc
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANN-MTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (458)
+.....-...++...+.....+ ...+....+.+|.+|.+.|. ++.++......++..+++.+...
T Consensus 342 --------~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~--~~~~~~~~~~~i~~~i~~~~~~~---- 407 (451)
T PF00083_consen 342 --------SSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRS--TGIGLSYAVGRIGGFIIPFLFPY---- 407 (451)
T ss_pred --------ccccccccccceeeeeccccccccccccccccccccccccccc--ccccccccccccccccccccccc----
Confidence 0000000111122222222223 23455568889999999999 88888888888777777665322
Q ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 012666 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD 252 (458)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 252 (458)
..+.. +....+.+.+.+.++..++.++++||++.+..+
T Consensus 408 -----~~~~~------~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ 445 (451)
T PF00083_consen 408 -----LFNNL------GGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLE 445 (451)
T ss_pred -----ccccc------cccccchhhHHHHHHHHhheeEEEeeCCCCCHH
Confidence 22211 224456666777777778888999999876544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-05 Score=75.24 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHH
Q 012666 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (458)
Q Consensus 340 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (458)
.+.....+..+++|++.||+|.|+++.++.+..++..+++.+.+ +...+.+.-+++|++.+..
T Consensus 70 ~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-----------------Sl~~L~i~R~llGvaEA~~ 132 (511)
T TIGR00806 70 VLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-----------------SVWHMQLMEVFYSVTMAAR 132 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 35666778889999999999999999999999999999988875 6788899999999999999
Q ss_pred hhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
. ..+.++...+|+ ++|+++.|+.+.+..+|.++++
T Consensus 133 ~-A~~syI~~WfP~--kER~ratsi~~sg~~vG~~Ia~ 167 (511)
T TIGR00806 133 I-AYSSYIFSLVPP--SRYQRAAAYSRAAVLLGVFLSS 167 (511)
T ss_pred H-HHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9 889999999999 9999999999999999988864
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-06 Score=85.88 Aligned_cols=131 Identities=17% Similarity=0.089 Sum_probs=95.4
Q ss_pred HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchh
Q 012666 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRA 138 (458)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (458)
+.+|.++.+.|.+.....++..++..+.+++.+ |++.|+.+.+...+................ . ......
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~----~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~-~-----~~gi~~ 350 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLK----TFPYRLLFGVTTLLYTLSSLFDLILVKRWN-L-----AFGISD 350 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHhCceeeeeccc-c-----ccCCCC
Confidence 568999999999999999999999999999988 999988877744443333222111111110 0 000011
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccc
Q 012666 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG 201 (458)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 201 (458)
.+.......+.+++.+....+...++.+..|++.++ ...++.....++|..+++.+++.+.
T Consensus 351 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~eg--t~~al~~s~~~lg~~v~~~~gg~l~ 411 (468)
T TIGR00788 351 EVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCES--SVFALLASILHLGSSVSGFLGVLLM 411 (468)
T ss_pred eeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCcee--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133445556677888888888999999999999999 9999999999999999999888743
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.9e-06 Score=75.52 Aligned_cols=175 Identities=19% Similarity=0.217 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhc
Q 012666 43 IQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121 (458)
Q Consensus 43 ~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~ 121 (458)
..++++..-..+.||- +-+|++..+...+......+..++-...|++..| |.++++.-.+ ++..++.++.++.++
T Consensus 220 ~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~---~~~~~~~a~~-G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 220 GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR---RLGKKRTAAL-GCLLGALAFALIILA 295 (403)
T ss_pred HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCchHHHHH-HHHHHHHHHHHHHHH
Confidence 3456677777888887 7799999999999999999888888888987774 5666555444 555566666555443
Q ss_pred cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccc
Q 012666 122 ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG 201 (458)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 201 (458)
... ...+.+....++.|++.+.......+.+.|+.++++.| ..+|.+.....++..++..+++...
T Consensus 296 ~~~------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG--~~mG~WGaaQA~A~Glg~~~GG~~~ 361 (403)
T PF03209_consen 296 GPL------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAG--LFMGAWGAAQAIARGLGTFLGGALR 361 (403)
T ss_pred Hhc------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 12378888899999999999999999999999999999 9999999999999999999888732
Q ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Q 012666 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240 (458)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (458)
+.. ..... .....+|..+|.+-++..+++.++..
T Consensus 362 D~~--~~~~~---~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 362 DLV--RALFG---NSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHH--HHhcc---CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00000 01223788888888877766655543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.3e-05 Score=76.17 Aligned_cols=95 Identities=9% Similarity=-0.005 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHh
Q 012666 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (458)
Q Consensus 347 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (458)
...++.|++.||+|+|+++.++.++..++.++.++.... .-..+.+.+++...+.|++.+..++.....
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~-----------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~ 144 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE-----------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVT 144 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc-----------cccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999999999888876200 001146777778888899888888777788
Q ss_pred HHhhhcccccccchhhhHHHHHHHhhhhh
Q 012666 427 VSIRTESLGLGQGLSLGVLNLAIVIPQVS 455 (458)
Q Consensus 427 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~i 455 (458)
+.+.+| ++||.+.|+......+|..+
T Consensus 145 i~~~Fp---~~RG~a~Gi~~~~~gLGsaI 170 (591)
T PTZ00207 145 VLSVFP---SNRGAVVAIMKTFTGLGSAI 170 (591)
T ss_pred HHHhCh---hhhHHHHHHHHHHHHHHHHH
Confidence 888887 56799999999999999865
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00042 Score=66.91 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhh-hhhhhccccceeccccCCcCCCcchhH
Q 012666 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (458)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~-~~~~~~~~~G~l~D~~~~r~Grr~~~~ 104 (458)
+..+++.+.++...++..+.++..-..=-.+. +.. +++.+..+=....+ ...+...+..+++| |++|++.+-
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n----~~s~~~lFy 93 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSN----RLSREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHH
Confidence 34466777777777776655553321111111 112 44455555443333 33455666788999 999988776
Q ss_pred HHHHHHHHHHHHHHh--hccccccccCCC------CCCCc--------hhHHHHHHHHHHHHHHhhhcch-hhHHHHhhh
Q 012666 105 VCGAISIAVAVLLIG--LSADIGWLLGDR------GDFRP--------RAIAVFVFGFWILDVANNMTQG-PCRALLADL 167 (458)
Q Consensus 105 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~--------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 167 (458)
+....... .+.+++ +-|+...+..+. ..... ..-|...+......+-.+...+ ..+.+..|.
T Consensus 94 ~~~~~F~~-fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i 172 (491)
T PF03219_consen 94 IIIIPFLG-FFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI 172 (491)
T ss_pred HHHHHHHH-HHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 53332222 222221 122221111111 00000 0112222223233333333333 468999999
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 168 TGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 168 ~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
++.++-. |..++.+.+.++|.++++.+...
T Consensus 173 tt~~eAK--RfYpl~g~ganigli~sG~~~~~ 202 (491)
T PF03219_consen 173 TTVEEAK--RFYPLFGLGANIGLIFSGQLTSY 202 (491)
T ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888 89999999999999988877555
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.9e-06 Score=73.55 Aligned_cols=101 Identities=11% Similarity=0.005 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHH
Q 012666 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (458)
Q Consensus 339 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (458)
...++..++.+++.|.+.||+|+|..+++|+.++....+++++.. +.+.++++=.+-|+|.+.
T Consensus 113 askA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-----------------sy~~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 113 ASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-----------------SYPMLFVARSLQGVGSAF 175 (464)
T ss_pred HHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-----------------hhHHHHHHHHHhhhhHHH
Confidence 346888899999999999999999999999999999999999885 566788888999999999
Q ss_pred HhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 419 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
..+...++++|.+|++ .+||.++|+.-.+..+|-+++.
T Consensus 176 ~~tsglamlAd~f~~d-~er~~vmGialgfislG~lvgP 213 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPED-NERGSVMGIALGFISLGVLVGP 213 (464)
T ss_pred HHhhhHHHHHHHcccc-hhhhHHHHHHHHHHhccceecC
Confidence 9999999999999983 4579999999999999887764
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.3e-06 Score=80.39 Aligned_cols=100 Identities=11% Similarity=0.031 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHH
Q 012666 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (458)
Q Consensus 338 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (458)
.....+++.+++++.|+++|++|||+.+.++.+...++.++..... +...+.+.-++.|+|.|
T Consensus 95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-----------------~~~~l~~GR~l~G~g~G 157 (513)
T KOG0254|consen 95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-----------------SWYQLIVGRILTGLGVG 157 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHhccchh
Confidence 3346778889999999999999999999999999999999999985 67889999999999999
Q ss_pred HHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
....+...+.+|..|+ +.||...+..++...+|..++
T Consensus 158 ~~~~~~piy~sEiap~--~~RG~l~~~~~l~~~~Gi~~~ 194 (513)
T KOG0254|consen 158 GASVLAPVYISEIAPA--HIRGTLVSLYQLFITIGILLG 194 (513)
T ss_pred hhhhcchhhHhhcCCh--hhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999998887664
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.3e-06 Score=74.82 Aligned_cols=97 Identities=19% Similarity=0.051 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHh
Q 012666 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (458)
Q Consensus 341 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (458)
+++...++++.+|.++||+|||+++..+.+..++..++.+... +...+...=++.|+.-+-.
T Consensus 77 F~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~-----------------~F~afv~aR~l~Gi~kgnl- 138 (451)
T KOG2615|consen 77 FSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR-----------------NFAAFVLARFLGGIFKGNL- 138 (451)
T ss_pred HHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhhhhccCch-
Confidence 6788899999999999999999999999999888877777764 5533444456677665543
Q ss_pred hchhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.+..++++|++++ +.|+..++.++.+..+|-+++.
T Consensus 139 ~v~rAiisdV~se--k~r~l~ms~v~~a~~lGfilGP 173 (451)
T KOG2615|consen 139 SVIRAIISDVVSE--KYRPLGMSLVGTAFGLGFILGP 173 (451)
T ss_pred HHHHHHHHhhcCh--hhccceeeeeehhhhcchhhcc
Confidence 4677999999999 8899999999999998887764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.8e-05 Score=75.40 Aligned_cols=92 Identities=10% Similarity=0.118 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHH
Q 012666 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (458)
Q Consensus 338 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (458)
.....+...++.++.|+++|.+|||..++.+.++..++.++.+..+ +...++....+.|++.+
T Consensus 84 ~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-----------------~~~~~iag~~l~GvgaG 146 (599)
T PF06609_consen 84 STAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-----------------NMNTFIAGMVLYGVGAG 146 (599)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-----------------cHHHHHHHHHHHHHhhH
Confidence 3345667778889999999999999999999999999999888774 56678888999999877
Q ss_pred HHhhchhHhHHhhhcccccccchhhhHHHHHH
Q 012666 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAI 449 (458)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 449 (458)
... .....++|..|. |.|+...++.....
T Consensus 147 ~~~-~~~~~isEl~p~--k~R~~~~~~~~~~~ 175 (599)
T PF06609_consen 147 VQE-LAALAISELVPN--KWRGLGLAIASIPF 175 (599)
T ss_pred HHH-HHHHHHHHhccc--chhhhHhHHHHHHH
Confidence 766 445668999998 77777666655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=65.14 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCc--hhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcc
Q 012666 45 FGWALQLSLLTPYVQELGIPH--AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (458)
..........+.+..+.+.+. ...++..+...+...+..++.|.++| |+|||+.++..... ...+.....+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~~~~-~~~~~~~~~~~~ 90 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD----RYGRRKVLIIGLLL-FLLGTLLLALAP 90 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccc----cccchHHHHHHHHH-HHHHHHHHHhCc
Confidence 444455556777777777666 47889999999999999999999999 88998666553332 233333333332
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccc-ccchhhhhhHHHHH-HHHHHHHHHHhhhccc
Q 012666 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFSL-FMAVGNILGYATGSFS 200 (458)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~-~~~~g~~ig~~~~~~~ 200 (458)
+ ...+.+.+.+...|++.+...+...+++.|..|+ ++|+ ...+.... ...+|..+++.+++..
T Consensus 91 ~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 91 N-------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERG--LAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred c-------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2236777777778888888889999999999997 5677 77777777 5777888888666552
Q ss_pred cccccccccccccccccccchhhHHHHHHHHH
Q 012666 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFI 232 (458)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (458)
... ...+|+..|.......
T Consensus 156 ~~~-------------~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 156 LGA-------------LLWGWRAAFLLAALLG 174 (338)
T ss_pred HHH-------------HhcchHHHHHHHHHHH
Confidence 211 1127888666555444
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-05 Score=74.32 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCh
Q 012666 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAG 362 (458)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r 362 (458)
||.++.++.+.+.--++++.+..-+..|+..+.... .+++.....+..+ .++...-+..+++|+++||+ |+|
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-----Lg~~~~~A~~l~~--~y~slVY~t~i~GG~laDr~LG~~ 92 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-----LGFDETHATGLFS--AYGSLVYLTPIIGGWLADRVLGTR 92 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-----CCcChHhhHHHHH--HHHHHHHHHHHHHHHHHHHhcchh
Confidence 577888888888888888887776777765332111 1122211111111 12333446778999999996 999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhh
Q 012666 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 442 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 442 (458)
+.++.|.++++++.+++.... .. ....+.+.+.+.++|.|..=+-..+++.|..|+++.++-..+
T Consensus 93 ~tI~lGail~~iGh~~L~~~~-------------~~--~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gF 157 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISS-------------VS--GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGF 157 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccc-------------cc--cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCc
Confidence 999999999999999887751 01 244567777777888998888899999999998655554445
Q ss_pred hHHHHHHHhhhhh
Q 012666 443 GVLNLAIVIPQVS 455 (458)
Q Consensus 443 g~~~~~~~~~~~i 455 (458)
+++.+..++|.++
T Consensus 158 t~fY~~iNiGsl~ 170 (498)
T COG3104 158 TLFYMGINIGSLI 170 (498)
T ss_pred cEEEEEeehHHHH
Confidence 5554444454443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.3e-05 Score=76.80 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHh
Q 012666 334 GALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILG 413 (458)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 413 (458)
..+...++.++..++.++.|.++||+|||+++.++.++..++-++.++.. +.+..+++-.+.|
T Consensus 120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~-----------------~~~~~~~~Rfl~G 182 (521)
T KOG0255|consen 120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP-----------------NYWMFLIFRFLSG 182 (521)
T ss_pred HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC-----------------cHHHHHHHHHHHH
Confidence 34455567778889999999999999999999999999999998888874 6788899999999
Q ss_pred hHHHHHhhchhHhHHhhhcccccccchhhhH
Q 012666 414 GPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (458)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (458)
++.+....+.+.+++|.+++ +.|+.+..+
T Consensus 183 ~~~~~~~~~~~~~~~E~~~~--~~R~~~~~~ 211 (521)
T KOG0255|consen 183 FFGSGPLTVGFGLVAEIVSP--KQRGLALTL 211 (521)
T ss_pred hhccchhHHhHhhheeecCc--chhhHHHHH
Confidence 99999999999999999999 778877777
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00028 Score=65.24 Aligned_cols=52 Identities=8% Similarity=-0.036 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhh
Q 012666 401 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQV 454 (458)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 454 (458)
+.++.+....++|+..|=..+....+..+.+|+ +++-.+-.+..++...|-.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~--~e~e~aG~~m~~fl~~Gl~ 393 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKP--SEKEAAGNLMVFFLVGGLA 393 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCCh--HHHHHHHHHHHHHHHHHHH
Confidence 446677778888887777777777777777776 3333333334444444433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.5e-05 Score=78.81 Aligned_cols=115 Identities=12% Similarity=0.125 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccC-------C-----C-----C-----CC
Q 012666 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR-------G-----H-----D-----LP 397 (458)
Q Consensus 340 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~-----~-----~~ 397 (458)
.+.++..+..++.+++.||.|||+.+.++.++++++.+++++.+......++. + . . .+
T Consensus 76 ~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 155 (633)
T TIGR00805 76 SYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRP 155 (633)
T ss_pred hhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccc
Confidence 35666778889999999999999999999999999999888765432211110 0 0 0 00
Q ss_pred ----------C--chHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 398 ----------P--NGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 398 ----------~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
. ...+..+++.-++.|++.+..++...+++.|.+|+ ++++.++|+++....+|..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~--~~~~~~~~i~~~~~~iG~~lG 224 (633)
T TIGR00805 156 TQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS--KNSPLYIGILESIAVFGPAFG 224 (633)
T ss_pred cccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc--cccHHHHHHHHHHHHhhhHHH
Confidence 0 01234566788999999999999999999999999 899999999999988887765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00045 Score=55.62 Aligned_cols=101 Identities=10% Similarity=0.094 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhH
Q 012666 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (458)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (458)
.++.+.-....++.++.+.+.+++|.|+.++++.+...+-.+..... +.+.++...++.|++
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~------------------~~~~l~~~s~l~G~~ 102 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP------------------NSYTLYPASALLGFG 102 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHHHHHhhh
Confidence 34444444456777888999999999999999988877655554433 467788899999999
Q ss_pred HHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
.+..++..-.++.+..++ +.+++..|++-.....+++++
T Consensus 103 ~a~lW~aqg~ylt~~s~~--~~~~~~~~ifw~i~~~s~i~G 141 (156)
T PF05978_consen 103 AALLWTAQGTYLTSYSTE--ETIGRNTGIFWAIFQSSLIFG 141 (156)
T ss_pred hHHhhHhhhHHHHHcCCH--HHHhhHHHHHHHHHHHHHHHH
Confidence 999998888889888777 666666666666655555544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00025 Score=63.38 Aligned_cols=296 Identities=12% Similarity=0.130 Sum_probs=152.2
Q ss_pred eeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhh
Q 012666 88 HFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADL 167 (458)
Q Consensus 88 ~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 167 (458)
.+.| -. |.|+.++.-.+..+....++.+.++. +.+=+.-+..|... +...+.++++-+.
T Consensus 64 lLTD----~l-rYKPvivlq~ls~v~~w~~lv~g~sV---------------~~mQvlE~FyG~~t-AaEIAYysYIYs~ 122 (433)
T KOG3810|consen 64 LLTD----YL-RYKPVVVLQALSGVPVWIMLVFGPSV---------------KAMQVLEFFYGPAT-AAEIAYYSYIYSK 122 (433)
T ss_pred HHhh----hh-hcceeeeeeccchhHHHHHHHhcCCc---------------hheeeehhhcChHH-HHHHhhhheeeee
Confidence 3668 66 44555554555556666666666655 22223333333333 2345667888888
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCC
Q 012666 168 TGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (458)
Q Consensus 168 ~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 247 (458)
.+++++. ++.+......-.|-..|..++..+...... ++...=.+......+. ....+++|..+
T Consensus 123 Vd~~~Yq--rvt~y~RaA~L~g~~~g~vlaQlLvs~~~~-------------sy~~LN~ISL~~~~ia-~~~A~fLP~v~ 186 (433)
T KOG3810|consen 123 VDPEMYK--RVTGYCRAAFLVGKFVGSVLAQLLVSLETL-------------SYTTLNYISLAEVTIA-VLLALFLPRVK 186 (433)
T ss_pred cCHHHHH--HHHHHhHHHHHHHhHHHhHHHHHHhhhccc-------------chhhhchhhHHHHHHH-HHHHhhCCCCc
Confidence 8988888 899988888888888888776653211100 2222222222222233 33335555554
Q ss_pred CCCC---CCCCC--CCccccccccchHHH--------HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 012666 248 LGSH---DQSAP--FSEEGHEQSSDVHEA--------FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGR 314 (458)
Q Consensus 248 ~~~~---~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
+..- ++++. .+.++... +.+..+ ..+++....++ |++..--+-..+...++.-...|..
T Consensus 187 rSl~f~~~~~~~~v~~~e~~~~-~~~~~~~l~~~~~~l~~~l~~~y~n--p~ll~WSlWwAl~scg~~QV~nY~Q----- 258 (433)
T KOG3810|consen 187 RSLYFHRLEDKISVGDLEEMNP-QASYMSYLRGAFVLLWRDLQECYSN--PRLLKWSLWWALASCGYYQVTNYTQ----- 258 (433)
T ss_pred hhhhhhcccccceeccchhcCc-cchhhHHHHHHHHHHHHHHHHHhcC--chhhhhHHHHHHhhchhHHHHHHHH-----
Confidence 3211 11100 00011010 111111 12233344444 3333222222222223333322222
Q ss_pred eeccCC-CcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChh--hHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 012666 315 EIYGGE-PNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF--IWGISNILMALCFLAMLILYYVAIHMDY 391 (458)
Q Consensus 315 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (458)
.+++.- +.....|+.+.+ ....+.++++.+..|.+.-++.|.. ++.++.+..+-+..++....
T Consensus 259 ~LW~~~~~~~~~vyNG~ve------Av~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~-------- 324 (433)
T KOG3810|consen 259 ILWKEVAPNPANVYNGAVE------AVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ-------- 324 (433)
T ss_pred HHHHhhCCCchhhhcCHHH------HHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc--------
Confidence 223222 222223333222 2234556777788888876665543 33444444444444444432
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhh
Q 012666 392 RGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQ 453 (458)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 453 (458)
+.|...+..+++...+....++...-+++.... +.-|..+|+..+..-+-|
T Consensus 325 ---------~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~--e~~gLvFGiNTFvAl~lQ 375 (433)
T KOG3810|consen 325 ---------HIWVCYAGYVLFRVIYQLTITIATFQIARNLSS--ELFGLVFGINTFVALILQ 375 (433)
T ss_pred ---------ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhh--hhheeeeehHHHHHHHHH
Confidence 578888999999988888888887778887777 888999998776655444
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.014 Score=56.21 Aligned_cols=54 Identities=7% Similarity=0.061 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 401 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+.+..++...++|+..|-..+....+..+.+++ +++-.+-.+.+++..+|-.+|
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~--~e~e~aG~~~~~~l~~Gl~~G 424 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDP--HEREVAGALMVIFLLVGLALG 424 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 456667778899998888888888888888777 666666666666666665554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00053 Score=64.90 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccc-cchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 012666 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKD-HRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNV 216 (458)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~ 216 (458)
....+.++..+.++|.|+.-+...++..|.++++ +......+.++....++|..++..+.+++....
T Consensus 32 ~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~------------ 99 (372)
T PF00854_consen 32 QLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY------------ 99 (372)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS------------
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhcccc------------
Confidence 3456778888889999999999999999999876 222226788899999999999988865543222
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHh
Q 012666 217 DCANLKSAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (458)
+|...|.+.++..+++.+..+.
T Consensus 100 ---~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 100 ---GWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHC
T ss_pred ---chhhhhhHHHHHHHHHHHHHHh
Confidence 8999999998877766655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=66.54 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (458)
.....+..|.+--.......+++.|+.+ .|.+..+.....+.+..+.+++..+.-++.. |+...|.+...+.+..
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~----~~~~~k~Laf~a~~~i 313 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS----RIKPEKYLAFYALIAI 313 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCHHHHHHHHHHHHH
Confidence 3333434444333344556788888866 8899999999999999999999988888888 8888888777554444
Q ss_pred HHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHH
Q 012666 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (458)
+++.. ..+.++ ...+....+.|+..+..+|...+...+..|++ -. ..+..-.+..+|+.
T Consensus 314 ll~~~-~~l~~g----------------~v~~~~l~~ig~F~simfPTIfslal~~l~~~-ts---~~s~~l~maivGGA 372 (422)
T COG0738 314 LLLLA-VALIGG----------------VVALYALFLIGLFNSIMFPTIFSLALKNLGEH-TS---VGSGLLVMAIVGGA 372 (422)
T ss_pred HHHHH-HHHhcC----------------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcc-cc---ccceeeeeheecch
Confidence 43333 334444 33445555677888999999999999999833 22 22334445566777
Q ss_pred HHHhhhccc
Q 012666 192 LGYATGSFS 200 (458)
Q Consensus 192 ig~~~~~~~ 200 (458)
+.|.+-|++
T Consensus 373 iiP~l~G~i 381 (422)
T COG0738 373 IIPPLQGVI 381 (422)
T ss_pred HHHHHHHHH
Confidence 777776653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00088 Score=53.93 Aligned_cols=102 Identities=8% Similarity=-0.024 Sum_probs=76.2
Q ss_pred hhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHH
Q 012666 73 LCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVA 152 (458)
Q Consensus 73 ~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 152 (458)
++......+.+++.+.+.+ ++|.|+.+++++.... +-.... +-++. +.++....+.|++
T Consensus 44 ai~Y~~~~~s~l~~P~iv~----~lg~K~sm~lg~~~y~-~y~~~~-~~~~~---------------~~l~~~s~l~G~~ 102 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVN----KLGPKWSMILGSLGYA-IYIASF-FYPNS---------------YTLYPASALLGFG 102 (156)
T ss_pred HHHHHHHHHHHHhHHHHHH----HHhhHHHHHHHHHHHH-HHHHHH-HhhhH---------------HHHHHHHHHHhhh
Confidence 3444455666667777889 9999998888554433 222222 22332 7778888899999
Q ss_pred hhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 012666 153 NNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (458)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (458)
.+..+.+...++.+..++++|+ +..++.-.....+.++|..+.
T Consensus 103 ~a~lW~aqg~ylt~~s~~~~~~--~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 103 AALLWTAQGTYLTSYSTEETIG--RNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred hHHhhHhhhHHHHHcCCHHHHh--hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 888888888888888877653
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.015 Score=57.68 Aligned_cols=170 Identities=16% Similarity=0.059 Sum_probs=104.7
Q ss_pred HHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccC--
Q 012666 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG-- 129 (458)
Q Consensus 52 ~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 129 (458)
..+..+..+++.+...+.-....+.-......++.++++|- .+||-+++.+.+.+ ...+...+..+.....+..
T Consensus 59 nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~---f~gry~tI~~~s~i-~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 59 NLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADS---FLGRYFTINIGSLI-SLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHH---HhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCcc
Confidence 34444457888888777777777777777888889999993 34888887775544 3333333333322222111
Q ss_pred ----CC----CCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccccc----chhhhhhHHHHHHHHHHHHHHHhhh
Q 012666 130 ----DR----GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH----RRTRVANAYFSLFMAVGNILGYATG 197 (458)
Q Consensus 130 ----~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (458)
.. ..........+..+..+..+|.+..-+...++-.|.++++. +....-+.++....++|..++..+.
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 01 11222334455566666667888889999999999998322 2211456777777888888877664
Q ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Q 012666 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240 (458)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (458)
.+.... .+|...|.+..+...++.++.+
T Consensus 215 vyiq~~---------------~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 215 VYIQDN---------------VGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred Hhhhhc---------------ccceeeccHHHHHHHHHHHHHH
Confidence 332111 2788888888777666555443
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.2e-05 Score=65.77 Aligned_cols=85 Identities=19% Similarity=0.363 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccc-----cCCcCCCcc
Q 012666 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR-----CTSRFGRRR 101 (458)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~-----~~~r~Grr~ 101 (458)
+..++..+..+...+.....-....+++-.++++.|.++.....++.+..+..++..|+.|..+|. ..+|+|||+
T Consensus 13 Pigr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~ 92 (412)
T KOG4830|consen 13 PIGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRM 92 (412)
T ss_pred cccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhccee
Confidence 355666777888888888888888889999999999999999999999999999999999977663 236999999
Q ss_pred hhHHHHHHHH
Q 012666 102 PFIVCGAISI 111 (458)
Q Consensus 102 ~~~~~~~~~~ 111 (458)
.+-..+..+.
T Consensus 93 ~wh~~gt~lV 102 (412)
T KOG4830|consen 93 SWHLIGTVLV 102 (412)
T ss_pred eeeecccEEE
Confidence 8876555433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.068 Score=50.80 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CchhhHHHHhhhhh-hhhhhccccceeccccCCcCCCcchhH
Q 012666 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGI---PHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (458)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---s~~~~~~~~~~~~~-~~~~~~~~~G~l~D~~~~r~Grr~~~~ 104 (458)
.+++.+...+.+++..+.++. +-..-+.+.+ +++.+.++=...-+ ...+..++..++++ +.-|++.+-
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~----~lt~~~vF~ 96 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLN----ILTREKVFY 96 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHh----hcCHHHHHH
Confidence 344555555555555444432 3333444433 45556666665555 55677888899999 888888776
Q ss_pred HHHHHHHHHHHHHHhh-ccccccccCCC---------CCC-C-chhH-----HHHHHHHHHHHHHhhhcch-hhHHHHhh
Q 012666 105 VCGAISIAVAVLLIGL-SADIGWLLGDR---------GDF-R-PRAI-----AVFVFGFWILDVANNMTQG-PCRALLAD 166 (458)
Q Consensus 105 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~-~-~~~~-----~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 166 (458)
....... ..++++++ .....+.+..+ +.. . -+.+ |...+.......-.+.... ..+....|
T Consensus 97 ~~~~~F~-~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNe 175 (509)
T COG3202 97 IILGFFL-GFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANE 175 (509)
T ss_pred HHHHHHH-HHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443322 22222222 11111111100 001 0 0111 3333333333344444444 56888999
Q ss_pred hcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 167 LTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 167 ~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
.+..++-. |..+..+...+++..+++.+...
T Consensus 176 itt~~eak--RFy~lf~l~~ni~lllsg~~~~~ 206 (509)
T COG3202 176 ITTIEEAK--RFYPLFGLGANISLLLSGEVTSW 206 (509)
T ss_pred hhhHHHhh--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888 89999999999999888887665
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00034 Score=49.28 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccc
Q 012666 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (458)
Q Consensus 44 ~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~ 123 (458)
.++-..+.+.+|...++.++|..+.+++.+...+++.++.+...++.+ +..+|+.+ ..+.+..++....+.+.++
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~----~~~~~~~~-~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPR----HSRPRRLL-RAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 445566778999999999999999999999999999999999998888 75554444 4477777777777766555
Q ss_pred c
Q 012666 124 I 124 (458)
Q Consensus 124 ~ 124 (458)
.
T Consensus 80 ~ 80 (85)
T PF06779_consen 80 F 80 (85)
T ss_pred h
Confidence 3
|
Note that many members are hypothetical proteins. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0015 Score=60.81 Aligned_cols=122 Identities=12% Similarity=-0.029 Sum_probs=74.5
Q ss_pred HHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCC
Q 012666 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (458)
Q Consensus 52 ~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (458)
..+..-+..-|.+....|.+.....+++++++.+.|.+.| |.+.-|..+........++...+.....
T Consensus 287 ~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~D----ktk~fk~~~~v~~~~~~v~~~~l~~~t~-------- 354 (480)
T KOG2563|consen 287 TLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIAD----KTKKFKLTTLVLYLFALVGTLMLLTCTL-------- 354 (480)
T ss_pred HHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence 3333334455777788999999999999999999999999 6644333333233333333222222211
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
.....+.+.....+.|++.....|...-+-.|.+-|...+ .-.|+.++...+-.
T Consensus 355 ---~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~--tSsGll~~~gq~f~ 408 (480)
T KOG2563|consen 355 ---FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEG--TSSGLLNLSGQIFG 408 (480)
T ss_pred ---cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCc--ccceeEEeehhHHH
Confidence 1122245556666777777788888888888877666655 45555555544433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.016 Score=40.37 Aligned_cols=70 Identities=10% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHH
Q 012666 290 ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISN 369 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 369 (458)
+-..+++.+.+..++..|.+.|+.+ .+.++.+ ..+...+..+..+++.+++|.++||.++++......
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~--~Gl~~~~----------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQ--LGLSPSQ----------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhh--cCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 3445566667777888888888742 2222211 112223356667889999999999999998876655
Q ss_pred HH
Q 012666 370 IL 371 (458)
Q Consensus 370 ~~ 371 (458)
.+
T Consensus 73 ~~ 74 (77)
T PF12832_consen 73 LF 74 (77)
T ss_pred HH
Confidence 44
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.067 Score=46.49 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=36.6
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhcccccccccccccc-ccccccccchhhHHHHHHHHHHHHHHHHHhc
Q 012666 171 DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT-SACNVDCANLKSAFFLDVIFIAITTCISASA 242 (458)
Q Consensus 171 ~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (458)
++|+ ..+.....++++|.++.... ++.. ........+|++.+.+.+++.++..++..++
T Consensus 2 k~K~--~~s~~n~~gf~iG~ii~~ip-----------F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKS--ILSQFNPWGFNIGTIIVNIP-----------FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred Cccc--eeeeeccccchhhHHHHHhh-----------HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556 66667777888888776543 2222 1122223479999988887776666655555
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.11 Score=47.70 Aligned_cols=72 Identities=15% Similarity=0.067 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHh
Q 012666 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (458)
Q Consensus 341 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (458)
..+.+.+.+.+.|.++||+|||+..+...++.+++.+..-.- +.+.+++.=++.|++.+..+
T Consensus 78 Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~------------------~~~~L~~GRvlgGiaTSLLf 139 (354)
T PF05631_consen 78 GFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS------------------NYPVLLLGRVLGGIATSLLF 139 (354)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc------------------ccHHHHHHHHHHHHHHHHHH
Confidence 455667888899999999999998888777777776543221 46778888888899888888
Q ss_pred hchhH-hHHhh
Q 012666 421 SVPYA-LVSIR 430 (458)
Q Consensus 421 ~~~~~-~~~~~ 430 (458)
+..-+ ++.|.
T Consensus 140 S~FEsW~V~Eh 150 (354)
T PF05631_consen 140 SAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHH
Confidence 76655 44444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.029 Score=53.56 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=81.3
Q ss_pred HhCCCchhh-HHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCC--CCCCc
Q 012666 60 ELGIPHAWA-SIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR--GDFRP 136 (458)
Q Consensus 60 ~~g~s~~~~-~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 136 (458)
..+.+.... +.......++..++....+.+++|.+ |+||++.+.++..+......+.....|....+-++. .....
T Consensus 272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir-~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~ 350 (461)
T KOG3098|consen 272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIR-GFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFT 350 (461)
T ss_pred hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhh-hcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccc
Confidence 344443332 33333444555566677777877555 688988777755554444444433223221111101 11223
Q ss_pred hhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Q 012666 137 RAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (458)
Q Consensus 137 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (458)
.......+..+++|++-+........++.+.. +++|. .+.++..+-..++..++...
T Consensus 351 ~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~--~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 351 PSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRA--QAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchH--HHHHHHHHHHHHHHHHHhhh
Confidence 34556677778889999999999999999998 46677 78888888888888776655
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.048 Score=47.83 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhH
Q 012666 348 TSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427 (458)
Q Consensus 348 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (458)
.+++.|.+.||+|++.++.+|.+...++...++... +++ - +. ...|.+.+...+.+.+.....+......
T Consensus 52 ~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~----~~~----i-~~-~~~~~~~~~~~l~~~s~~~~~ta~lvt~ 121 (250)
T PF06813_consen 52 FGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV----SGR----I-PS-LPVWLMCLFLFLGGNSSCWFNTASLVTC 121 (250)
T ss_pred ccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH----hCc----c-Cc-cchHHHHHHHHHHcccHHHhhhHHHHHH
Confidence 358889999999999999999999999998887764 111 0 11 1345555656666666655556665666
Q ss_pred HhhhcccccccchhhhHHHHHHHhhhhh
Q 012666 428 SIRTESLGLGQGLSLGVLNLAIVIPQVS 455 (458)
Q Consensus 428 ~~~~~~~~~~~g~~~g~~~~~~~~~~~i 455 (458)
.+.+| ++||++.|+.-....++..+
T Consensus 122 ~~NFP---~~RG~vvgilk~~~GLSaai 146 (250)
T PF06813_consen 122 VRNFP---RSRGTVVGILKGFFGLSAAI 146 (250)
T ss_pred HHhCc---cccCceehhhhHHHHhHHHH
Confidence 67787 56899999888777776654
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.004 Score=59.48 Aligned_cols=102 Identities=16% Similarity=0.082 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHH
Q 012666 340 LNSVVLGITSVLMEKLCRKWGA-GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (458)
Q Consensus 340 ~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (458)
...++.++++++.+....|.+. |+.++.|.+++.++.++.....+.+.+ ..+.++++-++.|+|.+.
T Consensus 79 a~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~------------~~y~mL~~R~l~Gvg~~n 146 (488)
T KOG2325|consen 79 ASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG------------VKYLMLVARILTGVGVGN 146 (488)
T ss_pred HHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc------------hHHHHHHHHHHcCcCccc
Confidence 3688889999999999999886 777888999999999888555432221 457778888888988765
Q ss_pred HhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 419 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
. ...-+++++..-. +.|-++++..+....+|+++|
T Consensus 147 ~-a~lR~Y~a~~s~~--~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 147 F-AVLRAYIADASTV--EDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred H-HHHHHHHHhccCc--cchHHHHHHhhhHHHHHHHHh
Confidence 4 3667888886555 445555555566555555554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.065 Score=51.17 Aligned_cols=133 Identities=13% Similarity=0.066 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHH---hhccccccc
Q 012666 51 LSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI---GLSADIGWL 127 (458)
Q Consensus 51 ~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 127 (458)
...+..|+...|+++..+|..-+...+.+..+.....++.+ |+|..|.=+++. ..-..++... .+.+.
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~----riGlvr~G~~~l-~~q~~~L~~~v~~~~~~~---- 348 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMK----RIGLVRAGLWSL-WWQWVCLALCVVSFWAPG---- 348 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchhhHHHHH-HHHHHHHHHHHHHHhcCC----
Confidence 34556778778999999999999999999999999999999 999887766532 2222111111 12221
Q ss_pred cCCCCCC-CchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 128 LGDRGDF-RPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 128 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
++ .......++.+..+.-+|.-...-...-++.|..|+++|+ ..+|......++-.++...++-.
T Consensus 349 -----~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg--~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 349 -----SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERG--AVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred -----CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhh--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 2234455555555555888888888899999999999999 99999999999998888877554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.22 Score=44.81 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=31.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Q 012666 330 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILM 372 (458)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 372 (458)
|.+.-.+.+..+++...+.+.+.|.+.+++||-.....+...-
T Consensus 308 Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~ 350 (390)
T KOG3097|consen 308 GVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVH 350 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 4343334455678888888999999999999988877665543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.021 Score=55.20 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=93.6
Q ss_pred HHHH-HHhCCCchhhHHHHhhhhhhhhhhccccc-eeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCC
Q 012666 55 TPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVG-HFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (458)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G-~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (458)
+.++ ..++.+..+.+.+.+.......+.+.+.. .+.. .+|-|+ ++..+...-........+.++.
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~----~l~~~~-~i~lGl~~~~~~~~~~af~~~~-------- 331 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSS----ILGEKR-LISLGLLSEFLQLLLFAFATET-------- 331 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhh-HhhHHHHHHHHHHHHHHHhccc--------
Confidence 4444 56899999999888888888888887776 5666 788877 4555777777888888787765
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 133 DFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 133 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
|+......+. .......+...+.++.+.+++++| ++.++......+...+++.+-+.
T Consensus 332 -------w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e~g--~v~~~is~i~~l~~~~~~~~~~~ 388 (463)
T KOG2816|consen 332 -------WMMFAAGVVV-ALAGIVFPAIRAFASILVSPEEQG--KVFGIISGIEGLSGVVSPALYGN 388 (463)
T ss_pred -------hhhhHHHHHH-HhhcchhHHHHhHHHhhccccccc--chhhHHHHHHHHhhhhhHHHHHH
Confidence 4544444333 334456778889999999999999 99999999999999999887544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.24 Score=48.91 Aligned_cols=126 Identities=10% Similarity=-0.102 Sum_probs=64.5
Q ss_pred HHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH-HHHHHHHHHhhccccccccCCCCCCCc
Q 012666 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI-SIAVAVLLIGLSADIGWLLGDRGDFRP 136 (458)
Q Consensus 58 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (458)
..-+|-+....+.+.+++.++..+++.+.+++.+ +.-|+...+-..+. ....+..++.....+ . .
T Consensus 42 ~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~----~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~--------~--~ 107 (521)
T PRK03612 42 SYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLR----DAAAGFVAVELLLALLGGLSALILYAAFAF--------Q--G 107 (521)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--H
Confidence 3557878888899999999999999988887764 32222221111111 111111111111010 0 0
Q ss_pred hhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccc
Q 012666 137 RAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 137 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (458)
..........++.++..|+..|....+..+... ++-+ ...|.......+|+++|.++.++.
T Consensus 108 ~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g--~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 108 LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLG--HNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchh--hhhhhhHhHHhHHHHHHHHHHHHH
Confidence 001112223334456666665555444433221 1223 456667777888888888887763
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.013 Score=56.51 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=83.3
Q ss_pred HHhC---CCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCC
Q 012666 59 QELG---IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFR 135 (458)
Q Consensus 59 ~~~g---~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (458)
+..+ +++...+.+..+..++..++..+...+-- ++.-|+.+.....+..+.++.-..+....... -..
T Consensus 245 ~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~----~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~-----~Gi 315 (433)
T PF03092_consen 245 DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFS----NWSWRRIFVVTTLVSVLASLFDLLLVTRWNLD-----LGI 315 (433)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHhcccEEEEEEEeee-----eCc
Confidence 3455 88888888887788887777777765444 45556666664444333333322222221000 000
Q ss_pred chhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccc
Q 012666 136 PRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG 201 (458)
Q Consensus 136 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 201 (458)
... +..+.--.+..+.......+...+++|+.|+...+ ...++.....++|..++..++..+.
T Consensus 316 ~d~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Eg--t~yall~s~~Nlg~~~s~~lg~~l~ 378 (433)
T PF03092_consen 316 PDQ-WFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEG--TVYALLASFSNLGSSVSSTLGAFLM 378 (433)
T ss_pred CCe-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 22223334455666667778888999999999999 9999999999999999999887743
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.72 Score=43.51 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhc
Q 012666 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (458)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (458)
.|..++..+..|+..|..+......+.|-.++++|. .+++..+...++|..++..++-
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~RE--Fslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDRE--FSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHhhHHHHHHHHHHH
Confidence 366667777788888888898888889889999999 9999999999999999988753
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.18 Score=45.58 Aligned_cols=98 Identities=21% Similarity=0.142 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHh
Q 012666 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (458)
Q Consensus 341 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (458)
..+...++.++.|++.||.|||+.+..+.....++.+...+.. . ...+...+.....|++.+...
T Consensus 48 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~g~~~~~~~ 112 (338)
T COG0477 48 FFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--------------N-VGLALLLILRLLQGLGGGGLL 112 (338)
T ss_pred HHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc--------------c-chHHHHHHHHHHHHhhhHHHH
Confidence 4555556668999999999999777777665444433333332 1 124455555555788888888
Q ss_pred hchhHhHHhhhcccccccchhhhHHHH-HHHhhhh
Q 012666 421 SVPYALVSIRTESLGLGQGLSLGVLNL-AIVIPQV 454 (458)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~~~~ 454 (458)
+...+++.|..|+ .+.++...+.... ...++..
T Consensus 113 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 146 (338)
T COG0477 113 PVASALLSEWFPE-ATERGLAVGLVTLGAGALGLA 146 (338)
T ss_pred HHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHH
Confidence 8889999999885 2256666666665 3444443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.22 Score=44.34 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=47.7
Q ss_pred HHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHH
Q 012666 69 SIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWI 148 (458)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (458)
|.+...-.+...+..+......||. ++|.|-.+ ..++.+.++...+++.+. ++-+.+..+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rf--pf~~Ri~~---~v~~sa~s~~lVafs~s~---------------~~sL~GV~~ 124 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRF--PFGFRIAL---VVLLSALSFFLVAFSNSV---------------PMSLLGVVF 124 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhc--ccchHHHH---HHHHHhcceEEEEeccch---------------hHHHhhhhh
Confidence 4444444444555555566677833 45665433 345566676666666665 666777777
Q ss_pred HHHHhhhcchhhHHHHhhh
Q 012666 149 LDVANNMTQGPCRALLADL 167 (458)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~ 167 (458)
..++.|.......++.+..
T Consensus 125 aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 125 ASISSGLGEITFLALSSRY 143 (409)
T ss_pred hhhcCCcceeehhhhhccC
Confidence 7788887777666665544
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.013 Score=53.73 Aligned_cols=112 Identities=10% Similarity=-0.023 Sum_probs=3.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHH
Q 012666 338 LMLNSVVLGITSVLMEKLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 416 (458)
Q Consensus 338 ~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (458)
...+.++..+|+.+..+..-+. .+|+++. ..+.-.+..-++......+.++. ..+.-.+.+..++.+.++|+..
T Consensus 188 fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~----~~~~~~~d~~~~i~~~l~g~TN 262 (309)
T PF01733_consen 188 FLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRY----LPVLFNSDAWFIILMLLFGFTN 262 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhccccc----CCCcccchHHHHHHHHHHHHcc
Confidence 3346788888888776642221 2344333 22222222222222211100000 0011123456677788889988
Q ss_pred HHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 417 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
|-..+....+..+.+++ +++-.+-.+.+++..+|-.+|
T Consensus 263 Gyl~tl~m~~~p~~v~~--~e~e~aG~~~~~~L~~Gl~~G 300 (309)
T PF01733_consen 263 GYLSTLAMMYAPKSVSP--EERELAGSVMSFFLSFGLFIG 300 (309)
T ss_dssp ----HHHH--------------------------------
T ss_pred chhhhceeeeCCCcCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888886 444444445555555554443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.32 Score=49.46 Aligned_cols=105 Identities=9% Similarity=-0.106 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHh-hcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhh
Q 012666 343 VVLGITSVLMEKLCRK-WGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (458)
Q Consensus 343 ~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (458)
...-+..++++.++|+ +|+++.+..+.++..++.+++.+..... . .........++.+.+..+|.+.+-+
T Consensus 34 ~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~-~--------~~~~~~~~~l~gLaLia~G~GgiKp 104 (654)
T TIGR00926 34 YLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPS-S--------GHPLHDLLDLLGLALIALGTGGIKP 104 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc-c--------ccchHHHHHHHHHHHHHhhcccccc
Confidence 3345667888999997 5999999999999888888777642100 0 0011223355666677778888888
Q ss_pred chhHhHHhhhcccc-cccchhhhHHHHHHHhhhhhc
Q 012666 422 VPYALVSIRTESLG-LGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 422 ~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~i~ 456 (458)
...+...|.+++++ +.+-..+.++..+.++|.+++
T Consensus 105 ~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis 140 (654)
T TIGR00926 105 CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLIS 140 (654)
T ss_pred CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 88899999887632 235566666667777776654
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=92.86 E-value=4.6 Score=39.37 Aligned_cols=109 Identities=11% Similarity=0.038 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhc-c----cCC--CCCCC-ch------HHHHHHHHHHHH
Q 012666 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHM-D----YRG--HDLPP-NG------IVIAALIIFTIL 412 (458)
Q Consensus 347 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~--~~~~~-~~------~~~~~~~~~~~~ 412 (458)
+..++.+++++|++|++++..........++++.+.-+...+. . .++ ...|. .. ..|...+..+..
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~ 138 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMA 138 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHH
Confidence 3367889999999999998776666666666665552211110 0 000 00010 00 012222222222
Q ss_pred hhHHHHHhh-chhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 413 GGPLAITYS-VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 413 g~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
.+--....+ .-+++++|.... ++..+..++++...++|.++++
T Consensus 139 elw~~~vvS~lFW~fandi~t~--~qakRfy~l~~~ganlg~i~sg 182 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFANQITTI--DEAKRFYALFGLGANVALIFSG 182 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 222222333 678999999998 8889999999999999998875
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.54 E-value=6 Score=36.73 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc-hhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHH
Q 012666 38 SVAGGIQFGWALQLSLLTPYVQELGIPH-AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (458)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~ 105 (458)
..++....+.-........++.+++-+. .....-..+-.....+..++.|.+.| +..|+|++..
T Consensus 34 ~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vD----g~sr~Kvi~~ 98 (503)
T KOG2601|consen 34 LGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVD----GMSRVKVIQT 98 (503)
T ss_pred HHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhc----chhHHHHHHH
Confidence 3444444455555556667777776432 23333334445556778888999999 9999887654
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.027 Score=55.82 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCC-----------CCC----------
Q 012666 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGH-----------DLP---------- 397 (458)
Q Consensus 339 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---------- 397 (458)
..+-++.++..++..++.+|..|-+.+-.|.++++++.+++.+-+...+..++... +.-
T Consensus 45 s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 124 (539)
T PF03137_consen 45 SSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASS 124 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccC
Confidence 33566677777788888888777777788999999999988876544332111100 000
Q ss_pred ------------CchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 398 ------------PNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 398 ------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
.....+.+++..++.|+|....+++..+++-|.+++ +..+.++|++.....+|..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~--~~splYiGi~~~~~~lGPa~G 193 (539)
T PF03137_consen 125 DCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK--KNSPLYIGILYAMSILGPALG 193 (539)
T ss_dssp ---------------------------SSS-----------------------------------------
T ss_pred ccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc--ccCccchhhhhHHhhccHHHH
Confidence 011235677888899999999999999999999999 889999999999999888765
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.33 Score=45.92 Aligned_cols=156 Identities=11% Similarity=0.117 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hcC
Q 012666 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK----WGA 361 (458)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~ 361 (458)
.+..+..+.+...+++..=..|.++|+. .+ +...+. .++.....-+.+.+.+++.|..+|| +||
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~-~l-Gvphk~----------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQ-SL-GVPHKW----------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHH-Hc-CCCccc----------ccccccccccccceeccccccccccccccccc
Confidence 3444455556666777777778888874 21 111111 1112222345566778889999996 588
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC-chHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccc
Q 012666 362 GFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPP-NGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (458)
Q Consensus 362 r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 439 (458)
||..+ .+....++++.++.+..+....-. +....|. .......++.+-+.-++.-......-++..|.... +++-
T Consensus 101 RRPfI~~~s~~i~~~l~Lig~aaDig~~lg-d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~--d~~~ 177 (498)
T KOG0637|consen 101 RRPFILAGSLLIAVSLFLIGYAADIGLLLG-DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG--DAKK 177 (498)
T ss_pred ccchHHHhhHHHHHHHhhhhhHhhhhHHhc-CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC--hhhh
Confidence 77765 466667777777777654332100 0000011 11222333444444445545566677889998766 3333
Q ss_pred h-hhhHHHHHHHhhhhhc
Q 012666 440 L-SLGVLNLAIVIPQVSS 456 (458)
Q Consensus 440 ~-~~g~~~~~~~~~~~i~ 456 (458)
+ +.+.+.++..+|+.++
T Consensus 178 ~~Ans~f~~f~avGnvLG 195 (498)
T KOG0637|consen 178 TRANSVFSFFMAVGNVLG 195 (498)
T ss_pred hccchhHHHHHHhcceee
Confidence 3 8888888888887664
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.56 E-value=3 Score=36.71 Aligned_cols=144 Identities=10% Similarity=0.129 Sum_probs=81.2
Q ss_pred hhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHH
Q 012666 67 WASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGF 146 (458)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (458)
-.|.+.+-++++.++++-+..++..|.+.|. ..++.......+..+.+.....+. ++.......-+++.
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~v---e~ymqivf~vs~a~l~Lpilt~~v--------sP~kes~~~s~i~F 351 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSRSSPKV---ESYMQIVFLVSIAALLLPILTSSV--------SPSKESPSESLIGF 351 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhcCCccc---chHHHHHHHHHHHHHHHHHHHhcc--------CCCcCCchHHHHHH
Confidence 3588888888888888888877777433222 233332333333333322222111 11112223335677
Q ss_pred HHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHH
Q 012666 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFF 226 (458)
Q Consensus 147 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (458)
.+...+.|..+|...-+-.+..|++.|. ..+-++..-.++-..++-.. ........+-|..|-
T Consensus 352 ~~~E~cvGlfwPSimkmRsqyIPEears--timNfFRvPLnifvClvLyn---------------lh~~~~p~~tr~mf~ 414 (454)
T KOG4332|consen 352 CLFEACVGLFWPSIMKMRSQYIPEEARS--TIMNFFRVPLNIFVCLVLYN---------------LHVDAFPTTTRNMFG 414 (454)
T ss_pred HHHHHHHhhcchHHHHHHHhhCCHHHHh--hhhhheechhhHhhhhhhee---------------cccccCccccchhhh
Confidence 7777888999999999999999999998 66665554444333222111 001111135667787
Q ss_pred HHHHHHHHHHHH
Q 012666 227 LDVIFIAITTCI 238 (458)
Q Consensus 227 ~~~~~~~~~~~~ 238 (458)
++.+...+..+.
T Consensus 415 icS~~~~~a~i~ 426 (454)
T KOG4332|consen 415 ICSAFLFVASIL 426 (454)
T ss_pred hhHHHHHHHHHH
Confidence 777666555443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.25 E-value=8.7 Score=35.42 Aligned_cols=101 Identities=11% Similarity=0.101 Sum_probs=65.8
Q ss_pred HHHHhhhhhhhhhhccccceeccccCCcCCCcc-hhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHH
Q 012666 69 SIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRR-PFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFW 147 (458)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (458)
|..-++..+.+++..+..|++-- ++.|.. .++..+...-+..++.+..+.++ |+..++..
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i----~w~r~g~~ll~~~s~~~agllf~m~~t~~I---------------w~~Ya~yv 334 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNI----NWNRWGDLLLAVGSAVQAGLLFIMAQTQHI---------------WVCYAGYV 334 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheee----ccchhhHHHHHHHHHHhhhhhhhhhcccce---------------ehhhhhHH
Confidence 55566777778888999998877 665553 33333444444444444444444 66667777
Q ss_pred HHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 148 ILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 148 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
+.........+....-+++....|.-| ..+|+..+..-+=.
T Consensus 335 lfr~~y~l~itiA~~~iA~nL~~e~~g--LvFGiNTFvAl~lQ 375 (433)
T KOG3810|consen 335 LFRVIYQLTITIATFQIARNLSSELFG--LVFGINTFVALILQ 375 (433)
T ss_pred HHHhhHhhhhhHHHHHHHHhhhhhhhe--eeeehHHHHHHHHH
Confidence 776666676777777778877777778 88887776544433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=90.25 E-value=5.9 Score=37.63 Aligned_cols=125 Identities=10% Similarity=0.099 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHh---CCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHH-HHHHHHHHHHHHhh
Q 012666 45 FGWALQLSLLTPYVQEL---GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC-GAISIAVAVLLIGL 120 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~-~~~~~~~~~~~~~~ 120 (458)
.++.....+...+-++. +-+...-|.+-++..+.+++.....|++.. ++.+-.-+.+. ..++.+..++++..
T Consensus 261 cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~----~w~~~~~l~l~~~S~l~a~~L~lm~~ 336 (412)
T PF01770_consen 261 CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKV----NWDRWGELALGVFSLLQAGLLFLMSF 336 (412)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhc----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666665666 333345588888888889999999999865 55553333332 22233344444445
Q ss_pred ccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
.+++ +...++.++.+.......+....-++.....+.-+ ..+|+..+...+=.
T Consensus 337 t~~I---------------wv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~ya--LVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 337 TGNI---------------WVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYA--LVFGINTFVALVLQ 389 (412)
T ss_pred hhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccee--eeeeeHHHHHHHHH
Confidence 5554 77788888887777777777777777777767767 77777665544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.82 E-value=2.4 Score=33.70 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=52.1
Q ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhccc
Q 012666 355 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (458)
Q Consensus 355 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (458)
++||+-||..+.. .+-.++++..+....++...+ ..+.| .+..++..+.++|+|.- .+.|..++..-++
T Consensus 57 Vs~RM~rRm~~~~-GiP~~lG~~~f~~~y~l~~~~---~~dvP---~~~~~~~S~~~Fg~gll---GisYGilSaSWD~- 125 (153)
T PF11947_consen 57 VSNRMLRRMAVFV-GIPTALGVAVFVVFYYLKSRQ---IVDVP---PWAVLLVSLVFFGLGLL---GISYGILSASWDP- 125 (153)
T ss_pred HHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHhcc---ccccC---chHHHHHHHHHHHHHHH---hhhhhhcccccCC-
Confidence 4677765554443 344444555444443333221 11233 34455556666665443 3567777787888
Q ss_pred ccccchhhhHHHHHHHhhhhh
Q 012666 435 GLGQGLSLGVLNLAIVIPQVS 455 (458)
Q Consensus 435 ~~~~g~~~g~~~~~~~~~~~i 455 (458)
+..|..+|+-++-.+++.+.
T Consensus 126 -~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 126 -EREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred -CCCCCcccHHHHHHhHHHHH
Confidence 78899999988888777654
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=89.02 E-value=6.3 Score=38.21 Aligned_cols=141 Identities=10% Similarity=0.074 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCC--cCCC---------------------c
Q 012666 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTS--RFGR---------------------R 100 (458)
Q Consensus 44 ~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~--r~Gr---------------------r 100 (458)
-+++...-.....=+-|.|++.++.+++..+-.-..++.....|+++.-.+. +..| -
T Consensus 291 KigF~a~da~T~LKLlEkG~~KE~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L 370 (544)
T PF13000_consen 291 KIGFQANDAVTSLKLLEKGLSKEDLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGAL 370 (544)
T ss_pred HhccccchhhhHHHHHHcCCCHHHhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhh
Confidence 3343333333334456789999999887766555566666666655541110 0000 0
Q ss_pred chhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhH
Q 012666 101 RPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180 (458)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 180 (458)
++++..-..=.+.+.+.......+ +.++......+.++++...+..+.....+.+..+.-+.+.+|..-| +.+.
T Consensus 371 ~~Wl~af~gRL~~a~l~~~iV~~f----P~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGG--TYMT 444 (544)
T PF13000_consen 371 RPWLWAFWGRLVAALLAQLIVYFF----PSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGG--TYMT 444 (544)
T ss_pred HHHHHHHHHHHHHHHHHHheEEeC----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch--HHHH
Confidence 222221111111111111111111 1111233334444555555666888888888899999999999999 9999
Q ss_pred HHHHHHHHHH
Q 012666 181 YFSLFMAVGN 190 (458)
Q Consensus 181 ~~~~~~~~g~ 190 (458)
+.+...++|+
T Consensus 445 LLNTvSNLGG 454 (544)
T PF13000_consen 445 LLNTVSNLGG 454 (544)
T ss_pred HHHHHHhcCC
Confidence 9998888765
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=88.58 E-value=5.8 Score=38.39 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 012666 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (458)
Q Consensus 140 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (458)
+..++...++|+..|-.......+.++..++++|. .+..+...+..+|..+|..++
T Consensus 373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e--~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHERE--VAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 56666788888888888888888889999988888 888888888888888887763
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=87.91 E-value=7.7 Score=27.51 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHH
Q 012666 334 GALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILY 383 (458)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 383 (458)
+.+....+.++.+++++...++.++.++++.+..+.+...+..+.+.+.+
T Consensus 29 ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 29 AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444557888889999999999988888888899999888888888874
|
Note that many members are hypothetical proteins. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.24 E-value=5.2 Score=36.43 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhc
Q 012666 343 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 422 (458)
Q Consensus 343 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 422 (458)
+.-+.++++.+.+.+++|.|+++.++..........-.. | .+..++......|++.+.....
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~---------------p---r~~tlVPa~~~~G~aa~p~W~S 130 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE---------------P---RYETLVPAGLVLGMAAGPIWAS 130 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc---------------h---hHHhhccHHHhhcccccccccc
Confidence 334566677779999999999988776554432221111 1 3455666777778877777766
Q ss_pred hhHhHHhhhc
Q 012666 423 PYALVSIRTE 432 (458)
Q Consensus 423 ~~~~~~~~~~ 432 (458)
.-+++++.-.
T Consensus 131 kgtYlT~~g~ 140 (390)
T KOG3097|consen 131 KGTYLTPMGQ 140 (390)
T ss_pred CcceecHHHH
Confidence 5555555543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=86.17 E-value=36 Score=33.54 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHH-----hhhcccCCC--CCCCchHH------HHHHHHHHH
Q 012666 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYV-----AIHMDYRGH--DLPPNGIV------IAALIIFTI 411 (458)
Q Consensus 345 ~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~------~~~~~~~~~ 411 (458)
.++...+..++.+|+++.+++..........+.++++.-+. +.+...+.. ..|..-.. .+....+-+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999998866555555555555544221 111100000 01110000 011112222
Q ss_pred HhhHHHHHh-h-chhHhHHhhhcccccccchhhhHHHHHHHhhhhhcC
Q 012666 412 LGGPLAITY-S-VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 412 ~g~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
..--||... + .-+.+.+|.... ++..+..++++...++|.++++
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~--~eAKRfYpl~g~ganigli~sG 197 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTV--EEAKRFYPLFGLGANIGLIFSG 197 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 233344332 3 458999999998 8899999999999999998875
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.75 E-value=8.9 Score=36.23 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHH---hCC-CchhhHHHHhh-hhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhc
Q 012666 47 WALQLSLLTPYVQE---LGI-PHAWASIIWLC-GPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121 (458)
Q Consensus 47 ~~~~~~~l~~~~~~---~g~-s~~~~~~~~~~-~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~ 121 (458)
+.......|-+..+ -+. +....-.+... +++...++.+...++-+ + +||+..+. .+.=.+...++.++
T Consensus 259 y~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~----~-~~r~l~i~--v~lR~lfiPlF~~c 331 (406)
T KOG1479|consen 259 YFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTW----P-DPRKLTIP--VLLRLLFIPLFLLC 331 (406)
T ss_pred eeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccC----C-CCceehHH--HHHHHHHHHHHHHh
Confidence 33334455666532 122 22233444455 78888888777776665 3 34554443 22222333333222
Q ss_pred cc--cccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Q 012666 122 AD--IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (458)
Q Consensus 122 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (458)
.. . ......-++.++...++|+..|=.......+.++..|++++. .+..+...+...|...|..+
T Consensus 332 n~~~~--------~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e--~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 332 NYPPL--------PVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKE--AAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred ccCCC--------CceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHH--HHHHHHHHHHHHHHHHhhHH
Confidence 11 1 111122266667777788887776777788888888888887 77777777777777777666
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.94 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.91 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.89 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.39 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.38 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.27 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.21 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.16 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.81 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.7 |
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-30 Score=246.02 Aligned_cols=358 Identities=12% Similarity=0.060 Sum_probs=251.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHH
Q 012666 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC 106 (458)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~ 106 (458)
+..++.+..++...+...+......+.+|.+.+++|.+..+.+++.+++.++..++.++.|+++| |+|||+.+++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~~ 97 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIITG 97 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH----HSCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchHHHHHH
Confidence 33455556666666666677778888899999999999999999999999999999999999999 99999988874
Q ss_pred HHHHHHHHHHHH---hhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHH
Q 012666 107 GAISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (458)
Q Consensus 107 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (458)
. +...++.++. ..++++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+
T Consensus 98 ~-~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~ 159 (438)
T 3o7q_A 98 L-FLYALGAALFWPAAEIMNY---------------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQ 159 (438)
T ss_dssp H-HHHHHHHHHHHHHHHTTCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH--HHHHHHH
T ss_pred H-HHHHHHHHHHHhccccccH---------------HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH--HHHHHHH
Confidence 4 4455555555 455665 88899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhhhcccc-cccccccc------------ccccccccccchhhHHHHHHHHHHHHHHHHHhc-cccCCCC
Q 012666 184 LFMAVGNILGYATGSFSG-WFKILPFT------------LTSACNVDCANLKSAFFLDVIFIAITTCISASA-AHEVPLG 249 (458)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~ 249 (458)
....+|..+++.+++... ... +.. ..........+|++.|++.+++.++..++..+. .||++++
T Consensus 160 ~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 237 (438)
T 3o7q_A 160 TFNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD 237 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 999999999999987743 111 000 000000000128999987776665555444332 3333221
Q ss_pred CCCCCCCCCccccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhceeccCCCccccccc
Q 012666 250 SHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW-MGREIYGGEPNEGQNYA 328 (458)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 328 (458)
++++ ++ + ++..++.++.+++ |.++..++..++..........+.+.| +. +.++.++.
T Consensus 238 ~~~~-------~~---~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~------ 295 (438)
T 3o7q_A 238 NHSD-------AK---Q---GSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVE-EIPGMTAG------ 295 (438)
T ss_dssp CCCC-------SS---T---TSHHHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSTTCCHH------
T ss_pred cccc-------cc---c---cchhhhHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCcchh------
Confidence 1110 00 0 1112344556666 788888888777777777777888888 53 33333322
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHH
Q 012666 329 TGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALII 408 (458)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (458)
..........++.+++.++.+++.||+|||+.+..+.++.+++.++..+.+ +.+ ..+.
T Consensus 296 ----~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~ 353 (438)
T 3o7q_A 296 ----FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----------------GHV-GLIA 353 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-----------------HHH-HHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-----------------CcH-HHHH
Confidence 122334445777888999999999999999999888888877776665542 222 3444
Q ss_pred HHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 409 FTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
..+.|++.+...+..+++..|.+|+ + ++...++.+ ...++..++
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~g~~~~ 397 (438)
T 3o7q_A 354 LTLCSAFMSIQYPTIFSLGIKNLGQ--D-TKYGSSFIV-MTIIGGGIV 397 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCGG--G-HHHHHHHHH-HTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc--c-ccchhhHHH-HHHHHHHHH
Confidence 5777888888888889998999987 4 666666555 444555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-31 Score=254.55 Aligned_cols=355 Identities=12% Similarity=0.083 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHH
Q 012666 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (458)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (458)
.......+...+........+|.+.+++ .+..+.+++.+++.++..++.++.|+++| |+|||+.+++ +.+...+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~ 104 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH----hcCchHHHHH-HHHHHHH
Confidence 3344444455555566677888888889 99999999999999999999999999999 9999998777 5555666
Q ss_pred HHHHHhh----ccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHH
Q 012666 114 AVLLIGL----SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (458)
Q Consensus 114 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (458)
+.++..+ ++++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++......+|
T Consensus 105 ~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g 167 (451)
T 1pw4_A 105 VMLFMGFVPWATSSI---------------AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVG 167 (451)
T ss_dssp HHHHHHHCHHHHSSS---------------SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccH---------------HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhh--HHHHHHHHHHHHH
Confidence 6666666 6666 77888899999999999999999999999999999 9999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccccc-hhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccc---cccc
Q 012666 190 NILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG---HEQS 265 (458)
Q Consensus 190 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~ 265 (458)
..+++.+++...... + |++.|++.+++.++..++.++..||++++...+++++.+++ +.++
T Consensus 168 ~~~g~~~~~~l~~~~---------------g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (451)
T 1pw4_A 168 GGIPPLLFLLGMAWF---------------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNE 232 (451)
T ss_dssp HTSHHHHHHHHHHHT---------------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------
T ss_pred HHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchh
Confidence 999999987632211 6 99999999988887777777788887665432211111110 0000
Q ss_pred cchHHHHHHH--HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHH
Q 012666 266 SDVHEAFLWE--LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (458)
Q Consensus 266 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
+.+++...++ .++.+++ +.++..++..++.......+..+.+.|+.+ .++.++ ...........+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~----------~~~~~~~~~~~~ 299 (451)
T 1pw4_A 233 KAEQELTAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFAL----------DKSSWAYFLYEY 299 (451)
T ss_dssp ------CCTHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCH----------HHHHHHHHHHHH
T ss_pred hhhcccccccchHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH----------HHHHHHHHHHHH
Confidence 0000111111 2334455 788888888888888888888888888743 233222 112233444677
Q ss_pred HHHHHHHHHHHHHHhh--cChhhHHHHHHHHH-HHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHh
Q 012666 344 VLGITSVLMEKLCRKW--GAGFIWGISNILMA-LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (458)
Q Consensus 344 ~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (458)
+.+++.++.+++.||+ |+|+.+..+..+.. ++++++.+. +. .+.+...+...+.|++.+...
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~g~~~~~~~ 364 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--------------PA-GNPTVDMICMIVIGFLIYGPV 364 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--------------CT-TCHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh--------------cc-cCHHHHHHHHHHHHHHHhchH
Confidence 7889999999999999 99998877766655 555444332 11 134556667777888888878
Q ss_pred hchhHhHHhhhcccccccchhhhHHHHHHHh-hhhhc
Q 012666 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVI-PQVSS 456 (458)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~i~ 456 (458)
+...+++.|.+|+ +.+|++.|+.+....+ +..++
T Consensus 365 ~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 365 MLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp HHHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhch--hhhhhHHHHHHHHHHHHHHHHH
Confidence 8888999999998 8899999999999888 87765
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=231.73 Aligned_cols=370 Identities=12% Similarity=0.030 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----hCCCchhhHHHHhhhhhhhhhhccccceeccccCCc-CCCcchhH
Q 012666 32 KLLKVASVAGGIQFGWALQLSLLTPYVQ-E-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFI 104 (458)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-----~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r-~Grr~~~~ 104 (458)
..+......+...+.++....+++.|++ + +|.+..+.+++.+++.++..+++++.|+++| | +|||+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~g~r~~~~ 89 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD----RIIGARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchHHHH
Confidence 4455555556666777777778888874 4 8999999999999999999999999999999 9 89999887
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHH
Q 012666 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (458)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (458)
. +.+...++.+...++++. +.+++.+++.|++.+...+...+++.|++|+++|+.+.+.++.+.
T Consensus 90 ~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 153 (491)
T 4aps_A 90 W-GGVLIMLGHIVLALPFGA---------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVF 153 (491)
T ss_dssp H-HHHHHHHHHHHHHSCCST---------------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHH
Confidence 7 455566666666677666 778889999999999999999999999999988432278888999
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccc
Q 012666 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (458)
Q Consensus 185 ~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (458)
..++|..+++.+++.+.... +|++.|++.++..++..++..+..|+..+++.++.+++.++++.+
T Consensus 154 ~~~~g~~~~~~~~~~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 154 GINLGAFIAPLIVGAAQEAA---------------GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---------------CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 99999999999987743322 899999998777666665554444443322211111110000000
Q ss_pred ccch-------------------------H-HH----------------HHHHHHH--HHhcchHHHHHHHHHHHHHHHH
Q 012666 265 SSDV-------------------------H-EA----------------FLWELFG--TFRYFSGTIWIILIVTALTWLG 300 (458)
Q Consensus 265 ~~~~-------------------------~-~~----------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 300 (458)
+..+ + .. ..++... ..++.....+.+.+..++.+..
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAI 298 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00 0000000 0011001233333344444444
Q ss_pred HHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHH-----HHHHHHHHH
Q 012666 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG-----ISNILMALC 375 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~~~~~ 375 (458)
+.....+.+.|.. +.++.+.... + .......+..+++.++.+++.||+|||+... .+..+.+++
T Consensus 299 ~~~~~~~~~~~~~-~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 299 EEQGSVVLATFAA-ERVDSSWFPV-----S-----WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HGGGGTHHHHHHH-HSCCCSSSCS-----G-----GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHH-HHhccCccCH-----H-----HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 4444444555553 2233222111 1 1122345556677888999999999986554 677777777
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhh
Q 012666 376 FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVS 455 (458)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i 455 (458)
++++......... +...+.+...+...+.|++.+...+..++++.|..|+ +.+|++.|+.+....+|..+
T Consensus 368 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 368 FLLMAIPGALYGT--------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK--AFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HTTTHHHHHHCCC--------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT--TCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 7666554321100 0111345566777888888888888889999999999 88999999999999888877
Q ss_pred cC
Q 012666 456 SC 457 (458)
Q Consensus 456 ~~ 457 (458)
++
T Consensus 438 ~~ 439 (491)
T 4aps_A 438 NA 439 (491)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=224.37 Aligned_cols=337 Identities=13% Similarity=0.051 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHH
Q 012666 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (458)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (458)
.++...+...+......+.+|.+.+++|.++.+.+++.++..++..+++++.|+++| |+||||.++. +.....++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~ 78 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD----RVGRRPVILV-GMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT----TSCCCCCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHH-HHHHHHHH
Confidence 344455556667777888899999999999999999999999999999999999999 9999999887 44445555
Q ss_pred HHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHH
Q 012666 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (458)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (458)
.....+.++. +.+++.+.+.|++.+...+...+++.|++|+++|+ ++++..+....+|..+++
T Consensus 79 ~~~~~~~~~~---------------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~ 141 (375)
T 2gfp_A 79 TLVAVTTSSL---------------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR--HANSLLNMGILVSPLLAP 141 (375)
T ss_dssp HHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccH---------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHhhH
Confidence 5656566665 78889999999999999999999999999999999 999999999999999999
Q ss_pred hhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccchHHHHHH
Q 012666 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (458)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (458)
.+++...... +|++.|++.+++.++..+...+..||+++++++++ +.. +
T Consensus 142 ~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~ 190 (375)
T 2gfp_A 142 LIGGLLDTMW---------------NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT-----RLL-----------T 190 (375)
T ss_dssp HHHHHSSCHH---------------HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC-----CTT-----------T
T ss_pred HHHHHHHHhc---------------cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc-----cHH-----------H
Confidence 9988754322 89999998888777766656667777654432210 000 0
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 012666 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (458)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 354 (458)
+.++.+++ |+++...+..++.......+..+.+.|+.+. ++.+ ............++.+++.++.++
T Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~----------~~~~g~~~~~~~~~~~~~~~~~~~ 257 (375)
T 2gfp_A 191 SYKTLFGN--SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-LGLS----------SMTVSILFILPIPAAFFGAWFAGR 257 (375)
T ss_dssp CSTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-HHHH----------HHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233445 6777777777777777777777888776432 1111 111122233356777788888899
Q ss_pred HHHhhcChhhHHHHHHH-HHHHHH--HHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhh
Q 012666 355 LCRKWGAGFIWGISNIL-MALCFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (458)
Q Consensus 355 l~dr~g~r~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (458)
+.||++++ +..+... ...+.. ...... .+ +.+...+...+.|++.+...+...++..|..
T Consensus 258 l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 320 (375)
T 2gfp_A 258 PNKRFSTL--MWQSVICCLLAGLLMWIPDWFG---VM------------NVWTLLVPAALFFFGAGMLFPLATSGAMEPF 320 (375)
T ss_dssp TTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH---HH------------HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc---cc------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99998772 2223322 222222 122211 00 3455667777888999988899999999998
Q ss_pred cccccccchhhhHHHHHHHhhhhhcC
Q 012666 432 ESLGLGQGLSLGVLNLAIVIPQVSSC 457 (458)
Q Consensus 432 ~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (458)
| +.+|++.|+.+....++..+++
T Consensus 321 p---~~~g~~~g~~~~~~~~g~~~~~ 343 (375)
T 2gfp_A 321 P---FLAGTAGALVGGLQNIGSGVLA 343 (375)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHCCS
T ss_pred C---cccchHHHHHHHHHHHHHHHHH
Confidence 7 4689999999999999988765
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-26 Score=220.99 Aligned_cols=366 Identities=14% Similarity=0.090 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHhCC--------CchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHh
Q 012666 48 ALQLSLLTPYVQELGI--------PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (458)
Q Consensus 48 ~~~~~~l~~~~~~~g~--------s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (458)
......+|.+.++++. ++.+.|++.+.+.++..++++++|+++| |+|||+.+++...+ ..++.+..+
T Consensus 29 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laD----r~GRk~~l~~~~~l-~~i~~i~~a 103 (491)
T 4gc0_A 29 AVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKIAAVL-FFISGVGSA 103 (491)
T ss_dssp HGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHH-HHHHHHHHH
Confidence 3344455666555532 2346788999999999999999999999 99999998885554 444444443
Q ss_pred hccccccccCC---CCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Q 012666 120 LSADIGWLLGD---RGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (458)
Q Consensus 120 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (458)
+++........ .........+.++++|++.|++.+...+...+++.|+.|+++|+ +..+..+....+|.++++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg--~~~~~~~~~~~~g~~~~~~~ 181 (491)
T 4gc0_A 104 WPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRG--KLVSFNQFAIIFGQLLVYCV 181 (491)
T ss_dssp CTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhh--hhHHhhhhhhhhhhhhhhhc
Confidence 32211000000 00012344588999999999999999999999999999999999 99999999999999988887
Q ss_pred hccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccc----------c
Q 012666 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS----------S 266 (458)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----------~ 266 (458)
+.......... ......|+..+.+..+.. +..++..++.||+|+....+.+.++.++..++ .
T Consensus 182 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 182 NYFIARSGDAS-------WLNTDGWRYMFASECIPA-LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHTTSCTT-------TTTTTHHHHHHHTTHHHH-HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhccccccc-------cccchhhHHHhhhhhhhh-hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 65521110000 001125666555555443 44455567789988754333222211100000 0
Q ss_pred chHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHH
Q 012666 267 DVHEAFLWEL-----FGTFRYFSGTIWIILIVTALTW-LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML 340 (458)
Q Consensus 267 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
.+.+....+. .....+. ++.........+.+ .+...+..|.+.+.. .. +.+ ..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~----------~~~~~~~~~~ 320 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLLMFGV-GVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TL-GAS----------TDIALLQTII 320 (491)
T ss_dssp HHHHHHHHHHHHHTTHHHHSCC-THHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS-SCC----------HHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHhcc-cHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hc-CCC----------ccchhhHHHH
Confidence 0000000000 0111111 23333333333333 233444444444332 11 100 0111223334
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHH-
Q 012666 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT- 419 (458)
Q Consensus 341 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 419 (458)
.++..+++.++.+++.||+|||+.+..+....+++++.+..... ... ..+...+...++..+++..
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------------TQA-PGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH------------TTC-CHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh------------ccc-chHHHHHHHHHHHHHHHhHH
Confidence 56777888999999999999999999888888887776655431 111 1222223333333333332
Q ss_pred hhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
.++.+.+.+|.+|+ +.|+++.|+.+....++.+++
T Consensus 388 ~~~~~~~~~E~fPt--~~R~~~~g~~~~~~~~~~~i~ 422 (491)
T 4gc0_A 388 GPVCWVLLSEIFPN--AIRGKALAIAVAAQWLANYFV 422 (491)
T ss_dssp THHHHHHHHHSSCT--TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCH--hHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999 888999998888887777654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=207.18 Aligned_cols=354 Identities=11% Similarity=0.068 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
.++.+......+...+.+....+++|.+++ ++|+++.+.|++.++..++..++++++|+++| |+||||++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD----r~Grr~~l~~~~~ 81 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWIIT 81 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT----TSTTCCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHH
Confidence 344555555555555566677788999885 58999999999999999999999999999999 9999999887444
Q ss_pred HHHHH--HHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhccc--ccchhhhhhHHHHH
Q 012666 109 ISIAV--AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK--DHRRTRVANAYFSL 184 (458)
Q Consensus 109 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~ 184 (458)
+..+. ......+.+... ......+.+.+++.+...+.......++.++ ++++ ...+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~ 145 (417)
T 2cfq_A 82 GMLVMFAPFFIFIFGPLLQ--------------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN--FEFGRARM 145 (417)
T ss_dssp HTTSCHHHHHHHTHHHHHH--------------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT--CCHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc--cchHHHHH
Confidence 33221 111111111100 0011222222222333333333344444433 2344 56666666
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccc
Q 012666 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (458)
Q Consensus 185 ~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (458)
...+|..+++.+++.+.. .+|+..|++.++..++..+...+..||+++.. +++ +++++ ++
T Consensus 146 ~~~~g~~~~~~l~~~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~ 205 (417)
T 2cfq_A 146 FGCVGWALGASIVGIMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSA-TVA--NAVGA-NH 205 (417)
T ss_dssp STTTHHHHHHHHHHHHHH----------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS-CSS--SSSSS-CC
T ss_pred HHHHHHHHHHHHHHHHHH----------------hchhHHHHHHHHHHHHHHHHHHHcCccccccc-ccc--ccccc-cc
Confidence 778888888888765321 16788887766554333333322333332211 110 00000 11
Q ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHH
Q 012666 265 SSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
++. ..++.++.+++ |+++...+..+.....+..+..+.+.|+.+ .++.. .. +............+.
T Consensus 206 ~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~--~~~~~g~~~~~~~~~ 271 (417)
T 2cfq_A 206 SAF----SLKLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFTS-FFATG-----EQ--GTRVFGYVTTMGELL 271 (417)
T ss_dssp CCC----CHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSSH-----HH--HTHHHHHHHHHHHHH
T ss_pred ccc----cHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcc-----CC--ChhHHHHHHHHHHHH
Confidence 011 12234556666 777766555444443433333344555422 12100 00 111111223334566
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchh
Q 012666 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424 (458)
Q Consensus 345 ~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (458)
.+++.++.+++.||+|||+++..+.++.+++++++.+. + +.+.+++...+.+++.+...+..+
T Consensus 272 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--------------T---SALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--------------C---SHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--------------c---cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999888877777765554432 1 234455555566666666666678
Q ss_pred HhHHhhhcccccccchhhhH-HHHHHHhhhhhc
Q 012666 425 ALVSIRTESLGLGQGLSLGV-LNLAIVIPQVSS 456 (458)
Q Consensus 425 ~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~i~ 456 (458)
.+.+|..|+ +.+|+..|+ ++....++..++
T Consensus 335 ~~~~~~~p~--~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 335 KYITSQFEV--RFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHHHHHSCH--HHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHCCH--HHHHHHHHHHHHHHHhHHHHHh
Confidence 899999999 888888887 476666665544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-23 Score=201.06 Aligned_cols=172 Identities=14% Similarity=0.198 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC------CCchhhHHHHhhhhhhhhhhccccceeccccCCcC-CCcchhH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELG------IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFI 104 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g------~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~-Grr~~~~ 104 (458)
.+......+...+.++....+++.++ +++| .+..+.+++.+++.++..++.++.|+++| |+ |||+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~~g~r~~~~ 89 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD----RFFGKYNTIL 89 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT----TSSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcchHHHH
Confidence 33444455555666777777888876 6689 99999999999999999999999999999 99 9999887
Q ss_pred HHHHHHHHHHHHHHhhcc-ccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHH--
Q 012666 105 VCGAISIAVAVLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-- 181 (458)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-- 181 (458)
+ +.+...++.++..+++ +. +.+++.+++.|++.+...+...+++.|++|+++|+ ++.+.
T Consensus 90 ~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~ 151 (524)
T 2xut_A 90 W-LSLIYCVGHAFLAIFEHSV---------------QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS--LAQKAFD 151 (524)
T ss_dssp H-HHHHHHHHHHHHHHTSSCH---------------HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT--HHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhccccchhHHHHHHHHcCccchH--HHHHHHH
Confidence 7 4455555556565655 55 77888899999999999999999999999999997 66555
Q ss_pred -HHHHHHHHHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHh
Q 012666 182 -FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (458)
Q Consensus 182 -~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (458)
.....++|..+++.+++.+... .+|++.|++.+++.++..++..+
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 152 MFYFTINFGSFFASLSMPLLLKN---------------FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHTSTHHHHT---------------SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999987764322 28999999888776665554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.3e-13 Score=128.73 Aligned_cols=182 Identities=16% Similarity=0.072 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 012666 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (458)
.+.+....+.+.+.+..+.+.........+..+...++.++.+++.| |+|||+.++..... ..++.+.+......
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~Grr~~~~~~~~~-~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRKPLQIIGALG-MAIGMFSLGTAFYT 365 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCSHHHHHHHHHH-HHHHHHHHHHHHHT
T ss_pred hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH----hhcCcchhccchHH-HHHHHHHHHHHHhc
Confidence 35566667778888888888888777777888888999999999999 99999988774443 33333333222111
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHHhhh-cchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccc
Q 012666 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNM-TQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (458)
.... ...++...+...+.+. ..+..+.+.+|.+|.+.|+ ++.++......+|+.+++.+...+
T Consensus 366 ---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~--~~~g~~~~~~~~~~~i~~~~~p~l--- 429 (491)
T 4gc0_A 366 ---------QAPG--IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWLANYFVSWTFPMM--- 429 (491)
T ss_dssp ---------TCCH--HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH--HHHHHHHHHHHHHHHHHHTHHHHH---
T ss_pred ---------ccch--HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1111 1222222222222222 3355678999999999999 999999999999998888764332
Q ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 012666 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253 (458)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 253 (458)
..........++...|++.++++++..++.++++||++.+..+|
T Consensus 430 ------~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 430 ------DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp ------CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred ------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 11100000014556788888888888888899999998765443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-13 Score=127.01 Aligned_cols=179 Identities=14% Similarity=0.066 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcC--CCcchhHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIVCG 107 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~--Grr~~~~~~~ 107 (458)
+.++......+...+.......++|.++++ +|.+..+.+++.+...++..++.++.|+++| |+ |||+.++...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----~~~~~~~~~~~~~~ 327 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFRGNRGATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCchhHHHHH
Confidence 445555555566666777778889999866 8999999999999999999999999999999 98 9988877755
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHH
Q 012666 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (458)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (458)
.+...++++.+.+.++ ...+...+...+.|++.+...+...+++.|.+|+++|+ ++.++.+....
T Consensus 328 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~ 392 (451)
T 1pw4_A 328 MTLVTIATIVYWMNPA-------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGY 392 (451)
T ss_dssp HHHHHHHHHHTTSCCT-------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh--hHHHHHHHHHH
Confidence 5544455555544321 11255556666778887777888889999999999999 99999999999
Q ss_pred H-HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhcc
Q 012666 188 V-GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA 243 (458)
Q Consensus 188 ~-g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (458)
+ |..+++.+.+.+.... +++..|++.+++.++..++.++..
T Consensus 393 ~~g~~~~~~~~g~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 393 LGGSVAASAIVGYTVDFF---------------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHSS---------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc---------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999877643322 788888888877776666555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=116.48 Aligned_cols=168 Identities=8% Similarity=-0.002 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHH-hC---CCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhc
Q 012666 46 GWALQLSLLTPYVQE-LG---IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121 (458)
Q Consensus 46 ~~~~~~~~l~~~~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~ 121 (458)
.+......+|.+.++ ++ .+....++..++..+...++.++.|+++| |+|||+.++. +.....+......+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~l~~-~~~~~~~~~~~~~~~ 309 (417)
T 2cfq_A 235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIGGKNALLL-AGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHH-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHH-HHHHHHHHHHHHHHh
Confidence 334444456766644 33 22445677777777888889999999999 9999988766 444444554444443
Q ss_pred cccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHH-HHHHHHHHHHHHHhhhccc
Q 012666 122 ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVGNILGYATGSFS 200 (458)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~ig~~~~~~~ 200 (458)
++. +.+++...+.+++.+...+....++.|.+|++.|+ ++.+. .+....+|..++|.+++.+
T Consensus 310 ~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 310 TSA---------------LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp CSH---------------HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred ccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 332 44445555556666666666788999999999999 88887 4778889999999998764
Q ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012666 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS 250 (458)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 250 (458)
.... +++..|.+.+++.++..++.++..||+++.+
T Consensus 373 ~~~~---------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 373 YESI---------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHS---------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHhc---------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 3221 6777888888777777776666677654433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=117.20 Aligned_cols=163 Identities=11% Similarity=0.056 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHH
Q 012666 33 LLKVASVAGGIQFGWALQLSLLTPY-VQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (458)
.+......+...........++|.| .++ +|.+..+.+++.++..++..++.++.|+++| |+|||+.++... +.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~~~-~~ 334 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS----RFAPHKVLAAYA-LI 334 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH-HH
Confidence 3344444444445566667888888 766 4999999999999999999999999999999 999998877744 44
Q ss_pred HHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 012666 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (458)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (458)
..++.+...+.++. + ..+...+.+++.+...+...++..|.+|++ ++ .+.++.. ...+|.
T Consensus 335 ~~~~~~~~~~~~~~---------------~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~-~~~~g~ 394 (438)
T 3o7q_A 335 AMALCLISAFAGGH---------------V-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIV-MTIIGG 394 (438)
T ss_dssp HHHHHHHHHHCCHH---------------H-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH--HHHHHHH-HTTHHH
T ss_pred HHHHHHHHHHcCCc---------------H-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc--chhhHHH-HHHHHH
Confidence 55555555454442 2 233446677888888888899999999966 77 6777666 566899
Q ss_pred HHHHhhhccccccccccccccccccccccc-hhhHHHHHHHHHHHH
Q 012666 191 ILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAIT 235 (458)
Q Consensus 191 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 235 (458)
.+++.+.+.+.... + ++..|.+.+++.++.
T Consensus 395 ~~~~~~~g~l~~~~---------------g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 395 GIVTPVMGFVSDAA---------------GNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHHHHHHH---------------TSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------------cchHHHHHHHHHHHHHH
Confidence 99998877643322 4 777777665544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.9e-11 Score=115.10 Aligned_cols=175 Identities=10% Similarity=0.049 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhH----HHHHHHHHHHHHHHh
Q 012666 45 FGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI----VCGAISIAVAVLLIG 119 (458)
Q Consensus 45 ~~~~~~~~~l~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~----~~~~~~~~~~~~~~~ 119 (458)
..+.....+++.+.++ .+.+..+.+++.....+...++.++.|+++| |+|||+... ..+.....++...+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWT----AWKKNQPSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHH----HTTTC---CHHHHHHHHHHHHHHHTTTH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHH----HHhccCCCchHHHHHHHHHHHHHHHHHH
Confidence 3344444566777754 6777677888888888889999999999999 999886543 124444444444333
Q ss_pred hccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhcc
Q 012666 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (458)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (458)
...... +.......+...+...+.+++.+...+...+++.|..|++.|+ ++.++.+....+|..+++.+.+.
T Consensus 373 ~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 373 IPGALY------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS--QMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp HHHHHC------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS--SSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhc------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 322100 0011112255666777788888888899999999999999999 99999999999999999998766
Q ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCC
Q 012666 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (458)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 247 (458)
... .++...|.+.+++.++..++.++..++.+
T Consensus 445 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 445 YNA----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp GGG----------------SSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred Hhc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 15566777777777777776666666544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.4e-08 Score=90.01 Aligned_cols=101 Identities=10% Similarity=0.078 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHH
Q 012666 337 GLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 416 (458)
Q Consensus 337 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (458)
......+...++.++.|+++||+|||+.+..+..+.+++.++..+.+ +.+.+++...+.|++.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----------------SLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHH
Confidence 34446777888999999999999999999999999999988888775 5677888888999999
Q ss_pred HHHhhchhHhHHhhhcccccccchhhhHHHHHHHhhhhhc
Q 012666 417 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQVSS 456 (458)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (458)
+...+...+++.|..|+ +++++.+++.+....+|..++
T Consensus 103 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~ 140 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYER--TQLRHANSLLNMGILVSPLLA 140 (375)
T ss_dssp HHHHHHHHHHHHHHHHT--SSCCSHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998 889999999999988887765
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=93.02 Aligned_cols=143 Identities=7% Similarity=-0.043 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhceecc------CCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012666 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYG------GEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358 (458)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 358 (458)
+.++.+.+..++..+++.....+.+.|+.++ ++ .++. ...+......++..++.++.|+++||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~s~~----------~~g~~~~~~~~~~~~~~~~~G~l~dr 80 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-LLLSIPEELRGA----------VAKDVFHSFVIGVYFFPLLGGWIADR 80 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCCSSSTTTT----------THHHHHHHHHHHHHHTHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777788777533 33 2221 12233444677778889999999999
Q ss_pred h-cChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccc
Q 012666 359 W-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (458)
Q Consensus 359 ~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
+ |||+++..+.++.+++.++..+. +. +.+.+++..++.|++.+...+...+++.|.+|+ ++
T Consensus 81 ~~g~r~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~ 142 (524)
T 2xut_A 81 FFGKYNTILWLSLIYCVGHAFLAIF--------------EH--SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SN 142 (524)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHT--------------SS--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--TT
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHh--------------cc--cHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--cc
Confidence 9 99999999998888888777665 20 255667778888999998889999999999998 66
Q ss_pred cchhhhH---HHHHHHhhhhhc
Q 012666 438 QGLSLGV---LNLAIVIPQVSS 456 (458)
Q Consensus 438 ~g~~~g~---~~~~~~~~~~i~ 456 (458)
+|...++ .+....+|..++
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444 777777766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 458 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 6e-05 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 0.004 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 42.8 bits (99), Expect = 6e-05
Identities = 41/400 (10%), Positives = 98/400 (24%), Gaps = 26/400 (6%)
Query: 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
F ++ I + II+ + L QPL G
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLL 66
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL 149
SD + G R+ + + + + + G L
Sbjct: 67 SD----KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN--------ILVGSIVGGIYL 114
Query: 150 DVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209
N A + ++ + + A + + A+G + + + F
Sbjct: 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQF------ 168
Query: 210 LTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269
+ + ++F A T S++ +H + + +
Sbjct: 169 -----VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW 223
Query: 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYAT 329
L+ + + Y T+ G +F E+
Sbjct: 224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLII 283
Query: 330 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAM--LILYYVAI 387
G L+L ++ + + + + + + I +
Sbjct: 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343
Query: 388 HMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427
+ + A+I ++L G + + A +
Sbjct: 344 RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 37.4 bits (85), Expect = 0.004
Identities = 43/378 (11%), Positives = 92/378 (24%), Gaps = 30/378 (7%)
Query: 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSD 91
++ + +L PY+ E G ++ F + ++G SD
Sbjct: 25 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD 84
Query: 92 RCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151
R R ++ L + +IAV ++
Sbjct: 85 ----RSNPRVFLPAGLILAA------------AVMLFMGFVPWATSSIAVMFVLLFLCGW 128
Query: 152 ANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT 211
M PC + + R V+ + G L F L
Sbjct: 129 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNC-------------AHNVGGGIPPLLFLLG 175
Query: 212 SACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271
A D I +A+ + + E
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235
Query: 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGV 331
++F + + +W I I +L + L + +E+ ++
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI-LDWSPTYLKEVKHFALDKSSWAYFLY 294
Query: 332 RMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDY 391
+ L + + + I+ I+ + + + + +
Sbjct: 295 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354
Query: 392 RGHDLPPNGIVIAALIIF 409
P I + AL +
Sbjct: 355 FLIYGPVMLIGLHALELA 372
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.22 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.5e-28 Score=235.15 Aligned_cols=342 Identities=14% Similarity=0.114 Sum_probs=233.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCC
Q 012666 53 LLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (458)
Q Consensus 53 ~l~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (458)
.+.++++++|+|.++.|++.+++.++..+++++.|+++| |+|||+.++. +.+...++.++..+.+...
T Consensus 46 ~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~r~~~~~-~~~~~~~~~~~~~~~~~~~------- 113 (447)
T d1pw4a_ 46 LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAAVMLFMGFVPWAT------- 113 (447)
T ss_dssp HHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHHHHHHHHHCHHHH-------
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHH-HHHHHHHHHhhccccchhh-------
Confidence 344456779999999999999999999999999999999 9999998877 4444555555544443220
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhccccccccccccccc
Q 012666 133 DFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 212 (458)
Q Consensus 133 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~ 212 (458)
...+.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+....+|..+++.+++......
T Consensus 114 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~i~~~~~~~~~~~~-------- 179 (447)
T d1pw4a_ 114 ----SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGGGIPPLLFLLGMAWF-------- 179 (447)
T ss_dssp ----SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHHHTSHHHHHHHHHHHT--------
T ss_pred ----hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccc--ccccccccccchhhhhhhhhhhhHhhhh--------
Confidence 11267788899999999999999999999999999999 9999999999999999988766522111
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc---cccchHH--HHHHHHHHHHhcchHHH
Q 012666 213 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE---QSSDVHE--AFLWELFGTFRYFSGTI 287 (458)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~ 287 (458)
.+|++.|++.+++.++..++.+++.+|+|+....+..++.+++.+ +++.+++ .......+.+++ +.+
T Consensus 180 ------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 251 (447)
T d1pw4a_ 180 ------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPN--KLL 251 (447)
T ss_dssp ------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSC--HHH
T ss_pred ------hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcC--chH
Confidence 278999999888888888888888887766543332222111110 0000000 011112233444 778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHH
Q 012666 288 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 367 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 367 (458)
+......++..........+.+.|+.+ .++.+. ...........+..+++.++.+++.||+++++....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 320 (447)
T d1pw4a_ 252 WYIAIANVFVYLLRYGILDWSPTYLKE-VKHFAL----------DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 320 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHhhhhhhhhhcchhhhhhhccc-cccccc----------chhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence 877777777777777777788877743 222221 222233444677788899999999999998765544
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHHhhhcccccccchhhhHHHH
Q 012666 368 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 447 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 447 (458)
......+.......... ....+.+...+...+.|++.+...+....+..|.+|+ +.+|++.|+.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~ 386 (447)
T d1pw4a_ 321 GVFFMTLVTIATIVYWM------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGL 386 (447)
T ss_dssp HHHHHHHHHHHHHHTTS------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT--THHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHh------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHH
Confidence 33333332222222210 1111455666677777887777778888999999998 889999999888
Q ss_pred HHHhhh
Q 012666 448 AIVIPQ 453 (458)
Q Consensus 448 ~~~~~~ 453 (458)
...++.
T Consensus 387 ~~~~~g 392 (447)
T d1pw4a_ 387 FGYLGG 392 (447)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=5.1e-24 Score=200.47 Aligned_cols=358 Identities=12% Similarity=0.036 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHH
Q 012666 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (458)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (458)
.+..+.+....+...+......+++|.++ +++|+|+.++|++.+++.++..+++|+.|+++| |+||||.+++...
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D----r~grr~~l~~~~~ 81 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWIIT 81 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH----HHTTCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHHH
Confidence 35667777777777778888888999877 568999999999999999999999999999999 9999999887544
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH
Q 012666 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (458)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (458)
... ++........+.. ......++...+.+.+.+...........+..+++.+...+..+........
T Consensus 82 ~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (417)
T d1pv7a_ 82 GML-VMFAPFFIFIFGP-----------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCV 149 (417)
T ss_dssp HHH-HTHHHHHHHTHHH-----------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHH-HHHHHHHHhhhhh-----------hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcc
Confidence 433 3333333332220 0011122333333334444444444444444433322211466667777778
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccccccch
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (458)
+..+++.+++.... .+++..+........+..++..+..+|++...++++++++++++ ..
T Consensus 150 ~~~~~~~~~~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 209 (417)
T d1pv7a_ 150 GWALGASIVGIMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA----FS 209 (417)
T ss_dssp HHHHHHHHHHHHHH----------------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCC----CC
T ss_pred cccccccccccccc----------------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccc----cc
Confidence 88888887766321 15566666666666666666667777765544333111111111 11
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeccCCCcccccccccchhHHHHHHHHHHHHHHH
Q 012666 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (458)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (458)
. ....+..++ +..+......................+.. .... ....+............++..++
T Consensus 210 ~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 275 (417)
T d1pv7a_ 210 L----KLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFA-------TGEQGTRVFGYVTTMGELLNASI 275 (417)
T ss_dssp H----HHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSS-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c----ccccccccc--ccccchhhhhHHHHHHHHhhhcccccccc-cccc-------ccccchhhhcccccccccccccc
Confidence 1 111222233 22232222222222222222221121111 0000 00111112222333456677788
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCchHHHHHHHHHHHHhhHHHHHhhchhHhHH
Q 012666 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (458)
Q Consensus 349 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (458)
..+.+++.||.++|+.+..+.++.+++.+.+.+.+ +.+..++...+.|++.+...+...+++.
T Consensus 276 ~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 338 (417)
T d1pv7a_ 276 MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-----------------SALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccccchhhhHHHHHHhhhcccccc-----------------ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999888888877776652 4667778888899999999999999999
Q ss_pred hhhcccccccchhhhHH-HHHHHhhhhhc
Q 012666 429 IRTESLGLGQGLSLGVL-NLAIVIPQVSS 456 (458)
Q Consensus 429 ~~~~~~~~~~g~~~g~~-~~~~~~~~~i~ 456 (458)
|.+|+ +.+|+..|+. ++...+|..++
T Consensus 339 ~~~~~--~~~~~~~~~~~~~~~~~g~~i~ 365 (417)
T d1pv7a_ 339 SQFEV--RFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHSCG--GGHHHHHHHHHTTTHHHHHHHH
T ss_pred HHCCH--hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 8888888874 45555665544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=3.6e-12 Score=118.26 Aligned_cols=150 Identities=8% Similarity=-0.035 Sum_probs=117.5
Q ss_pred hCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCCchhHH
Q 012666 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIA 140 (458)
Q Consensus 61 ~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (458)
.+.+....+.......++..++.++.+++.| |+|||+.+.. +.....++.+...+.++. +
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------~ 313 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIGGKNALLL-AGTIMSVRIIGSSFATSA---------------L 313 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH----HHCHHHHHHH-HHHHHHHHHHHHHTCCCH---------------H
T ss_pred cccchhhhcccccccccccccchhhhhhhhc----ccccccchhh-hHHHHHHhhhcccccccc---------------c
Confidence 3344556777778888888999999999999 9999888777 444555566666566665 6
Q ss_pred HHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHH-HHHHHHHHHHHHhhhcccccccccccccccccccccc
Q 012666 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF-SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCA 219 (458)
Q Consensus 141 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (458)
..++...+.+++.+...+...+++.|.+|++.|+ ++.+.. +....+|..+++.+.|.+....
T Consensus 314 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~i~~~~~G~l~~~~--------------- 376 (417)
T d1pv7a_ 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMYESI--------------- 376 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH--HHHHHHHTTTHHHHHHHHHHHHHHHHHHH---------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 6777778888999999999999999999999999 888874 5667789999999877743332
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccccCC
Q 012666 220 NLKSAFFLDVIFIAITTCISASAAHEVP 247 (458)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 247 (458)
|++..|++.+++.++..++..+.+++++
T Consensus 377 g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 377 GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 7888999988888888777777776554
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=5.7e-12 Score=118.69 Aligned_cols=182 Identities=13% Similarity=0.004 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhhccccceeccccCCcCCCcchhHHHHHH
Q 012666 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (458)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (458)
+..+......+...........+.+.++ +..+.+..+.+....+..+...++.++.|+++| |++||+........
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~ 324 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFRGNRGATGVFF 324 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSTTCHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhh----hccccccccccchh
Confidence 3444555555555555666667788887 568899999999999999999999999999999 99887654443322
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCchhHHHHHHHHHHHHHHhhhcchhhHHHHhhhcccccchhhhhhHHHHHHHHH-
Q 012666 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV- 188 (458)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~- 188 (458)
.............. .....+...+..++.+++.+...+....+..|.+|++.|+ ++.|+.+....+
T Consensus 325 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~~ 391 (447)
T d1pw4a_ 325 MTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLG 391 (447)
T ss_dssp HHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHH
Confidence 22222222222111 1122255556666677777777788889999999999999 999998887777
Q ss_pred HHHHHHhhhccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHhccc
Q 012666 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (458)
Q Consensus 189 g~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (458)
|.++++.+.+...... +|+..|++.+.+.++..++..++.+
T Consensus 392 g~~~~~~~~g~~~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 392 GSVAASAIVGYTVDFF---------------GWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHHSS---------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---------------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777766533222 7888888777666666555544443
|