Citrus Sinensis ID: 012714

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF
Secondary Structure (PSIPRED)
cEEEEEcccccEEEEEEcccccHHHHHHHHHHHHcccccccEEEEccEEccccccccccccccccEEEEEEEEcccEEEEEEEccccEEEEEcccccHHHHHHHHHHccccccccccccccccEEccccccccccccccccEEEEEEEEcccEEEEEEcccccEEEEccccccHHHHHHHHHHHHHccccccccEEcccEEcccccccccccccccccHHEEEEEcccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEccEEccccccccccccccccEEEcEEEEcccEEEEEEEccccEEEEEccccccHHHHHHHHHHHcccccccEEEccccEEccccccccccccccccEEEEEEEEccccEEEEEcccccEEEEEcccccHHHHHHHHHHHccccccccEEEEcccEEccccccccccccccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccc
Coil and Loop (DISEMBL)
MQIFVKTltgktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGEF
Flexible Loop (DISEMBL)
mqifvktltgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLadyniqkestlhlvlrlrggef
Low Complexity Region (SEG)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF
Disordered region (IsUnstruct)
***FVKTLTGKTITLEV************************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES**TI******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES**TI******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES**TI******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES**TI******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES***I******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRL*****
Disordered Region (DISOPRED)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE*
Disordered Region (DISEMBL)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF
Disordered Region (DISPRO)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
P0CH05	458	Polyubiquitin OS=Petrosel	N/A	no	1.0	1.0	0.997	0.0
P0CH04	458	Polyubiquitin OS=Petrosel	N/A	no	1.0	1.0	0.997	0.0
Q8H159	457	Polyubiquitin 10 OS=Arabi	yes	no	0.995	0.997	1.0	0.0
P0CG85	457	Polyubiquitin OS=Nicotian	N/A	no	0.995	0.997	1.0	0.0
P59669	457	Polyubiquitin OS=Geodia c	N/A	no	0.995	0.997	0.958	0.0
P0CG71	838	Polyubiquitin-A OS=Caenor	yes	no	1.0	0.546	0.954	0.0
P62976	658	Polyubiquitin OS=Cricetul	yes	no	0.995	0.693	0.960	0.0
Q63429	810	Polyubiquitin-C OS=Rattus	yes	no	0.995	0.562	0.960	0.0
P0CG50	734	Polyubiquitin-C OS=Mus mu	yes	no	0.995	0.621	0.960	0.0
P0CG69	763	Polyubiquitin OS=Drosophi	yes	no	0.995	0.597	0.960	0.0

>sp|P0CH05|UBI2P_PETCR Polyubiquitin OS=Petroselinum crispum GN=PCUBI4-2 PE=3 SV=1

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/458 (99%), Positives = 458/458 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 458
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+F
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 458

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.
Petroselinum crispum (taxid: 4043)

>sp|P0CH04|UBI1P_PETCR Polyubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=2 SV=1

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/458 (99%), Positives = 458/458 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 458
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+F
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 458

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Petroselinum crispum (taxid: 4043)

>sp|Q8H159|UBQ10_ARATH Polyubiquitin 10 OS=Arabidopsis thaliana GN=UBQ10 PE=1 SV=2

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CG85|UBI1P_NICSY Polyubiquitin OS=Nicotiana sylvestris GN=UBI11 PE=2 SV=1

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Nicotiana sylvestris (taxid: 4096)

>sp|P59669|UBIQP_GEOCY Polyubiquitin OS=Geodia cydonium PE=2 SV=2

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/456 (95%), Positives = 456/456 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV+R
Sbjct: 241 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVVR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Geodia cydonium (taxid: 6047)

>sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A OS=Caenorhabditis elegans GN=ubq-1 PE=2 SV=1

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/458 (95%), Positives = 456/458 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTL GKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 441 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 500

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKA
Sbjct: 501 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 560

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 561 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 620

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct: 621 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 681 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 740

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 741 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ 800

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 458
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG+ 
Sbjct: 801 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGDI 838

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Caenorhabditis elegans (taxid: 6239)

>sp|P62976|UBIQP_CRIGR Polyubiquitin OS=Cricetulus griseus PE=2 SV=2

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Cricetulus griseus (taxid: 10029)

>sp|Q63429|UBC_RAT Polyubiquitin-C OS=Rattus norvegicus GN=Ubc PE=1 SV=1

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Rattus norvegicus (taxid: 10116)

>sp|P0CG50|UBC_MOUSE Polyubiquitin-C OS=Mus musculus GN=Ubc PE=1 SV=2

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Mus musculus (taxid: 10090)

>sp|P0CG69|UBIQP_DROME Polyubiquitin OS=Drosophila melanogaster GN=Ubi-p63E PE=3 SV=1

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
302595949	458	RecName: Full=Polyubiquitin; Contains: R	1.0	1.0	0.997	0.0
297840967	458	polyubiquitin [Arabidopsis lyrata subsp.	1.0	1.0	0.995	0.0
224286458	458	unknown [Picea sitchensis]	1.0	1.0	0.995	0.0
297841025	483	hexaubiquitin protein [Arabidopsis lyrat	0.995	0.944	1.0	0.0
357123434	609	PREDICTED: polyubiquitin-A-like [Brachyp	0.997	0.750	0.997	0.0
413926513	535	ubiquitin2 [Zea mays]	0.997	0.854	0.997	0.0
248337	533	polyubiquitin [Zea mays] gi|248339|gb|AA	0.997	0.857	0.997	0.0
115444401	457	Os02g0161900 [Oryza sativa Japonica Grou	0.997	1.0	0.997	0.0
225465623	538	PREDICTED: polyubiquitin-C-like [Vitis v	0.997	0.849	0.997	0.0
357474763	752	Multidrug resistance protein ABC transpo	0.995	0.606	1.0	0.0

>gi|302595949|sp|P0CH04.1|UBI1P_PETCR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor gi|302595950|sp|P0CH05.1|UBI2P_PETCR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor gi|288112|emb|CAA45621.1| polyubiquitin [Petroselinum crispum] gi|288114|emb|CAA45622.1| polyubiquitin [Petroselinum crispum]

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/458 (99%), Positives = 458/458 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 458
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+F
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 458

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840967|ref|XP_002888365.1| polyubiquitin [Arabidopsis lyrata subsp. lyrata] gi|297334206|gb|EFH64624.1| polyubiquitin [Arabidopsis lyrata subsp. lyrata]

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/458 (99%), Positives = 457/458 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLE+ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEIESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 458
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 458

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224286458|gb|ACN40936.1| unknown [Picea sitchensis]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/458 (99%), Positives = 457/458 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 458
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+F
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 458

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841025|ref|XP_002888394.1| hexaubiquitin protein [Arabidopsis lyrata subsp. lyrata] gi|297334235|gb|EFH64653.1| hexaubiquitin protein [Arabidopsis lyrata subsp. lyrata]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357123434|ref|XP_003563415.1| PREDICTED: polyubiquitin-A-like [Brachypodium distachyon]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/457 (99%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 332

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 392

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 453 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 512

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 513 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 572

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 573 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 609

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413926513|gb|AFW66445.1| ubiquitin2 [Zea mays]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/457 (99%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 79  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 138

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 139 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 198

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 199 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 258

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 259 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 318

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 319 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 378

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 379 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 438

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 439 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 498

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 499 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 535

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|248337|gb|AAB21993.1| polyubiquitin [Zea mays] gi|248339|gb|AAB21994.1| polyubiquitin [Zea mays] gi|33323474|gb|AAQ07454.1| ubiquitin [Musa acuminata] gi|52076878|dbj|BAD45891.1| polyubiquitin [Oryza sativa Japonica Group] gi|218198760|gb|EEC81187.1| hypothetical protein OsI_24193 [Oryza sativa Indica Group] gi|222636097|gb|EEE66229.1| hypothetical protein OsJ_22384 [Oryza sativa Japonica Group] gi|413926516|gb|AFW66448.1| ubiquitin2 [Zea mays] gi|413935667|gb|AFW70218.1| clone MubG1 ubiquitin [Zea mays]

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/457 (99%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 437 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 496

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 497 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 533

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115444401|ref|NP_001045980.1| Os02g0161900 [Oryza sativa Japonica Group] gi|115469558|ref|NP_001058378.1| Os06g0681400 [Oryza sativa Japonica Group] gi|6013289|gb|AAF01315.1|AF184279_1 polyubiquitin [Oryza sativa Indica Group] gi|6013291|gb|AAF01316.1|AF184280_1 polyubiquitin [Oryza sativa Indica Group] gi|416038|emb|CAA53665.1| polyubiquitin [Oryza sativa Indica Group] gi|1574944|gb|AAC49806.1| polyubiquitin [Oryza sativa Indica Group] gi|49389251|dbj|BAD25213.1| polyubiquitin 6 [Oryza sativa Japonica Group] gi|113535511|dbj|BAF07894.1| Os02g0161900 [Oryza sativa Japonica Group] gi|113596418|dbj|BAF20292.1| Os06g0681400 [Oryza sativa Japonica Group] gi|215715366|dbj|BAG95117.1| unnamed protein product [Oryza sativa Japonica Group] gi|218190115|gb|EEC72542.1| hypothetical protein OsI_05955 [Oryza sativa Indica Group] gi|222622224|gb|EEE56356.1| hypothetical protein OsJ_05481 [Oryza sativa Japonica Group] gi|284431760|gb|ADB84621.1| polyubiquitin [Oryza sativa Japonica Group] gi|306415955|gb|ADM86852.1| polyubiquitin [Oryza sativa Japonica Group] gi|326504784|dbj|BAK06683.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|332379898|gb|AEE65380.1| ubiquitin 2 [Panicum virgatum] gi|413926517|gb|AFW66449.1| ubiquitin2 [Zea mays]

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/457 (99%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 457

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465623|ref|XP_002267206.1| PREDICTED: polyubiquitin-C-like [Vitis vinifera]

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/457 (99%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 437 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 496

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 497 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474763|ref|XP_003607667.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] gi|355508722|gb|AES89864.1| Multidrug resistance protein ABC transporter family [Medicago truncatula]

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 220 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 279

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 280 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 339

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 340 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 399

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 400 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 459

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 460 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 519

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 520 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 579

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 580 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 639

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 640 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 675

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
TAIR|locus:2115663	457	UBQ10 "AT4G05320" [Arabidopsis	0.995	0.997	1.0	7.9e-236
WB|WBGene00006727	838	ubq-1 [Caenorhabditis elegans	0.997	0.545	0.956	4.8e-229
ZFIN|ZDB-GENE-061110-88	533	ubc "ubiquitin C" [Danio rerio	0.997	0.857	0.958	2.6e-228
RGD|621244	810	Ubc "ubiquitin C" [Rattus norv	0.995	0.562	0.960	3.4e-228
FB|FBgn0003943	763	Ubi-p63E "Ubiquitin-63E" [Dros	0.995	0.597	0.960	3.4e-228
MGI|MGI:98889	734	Ubc "ubiquitin C" [Mus musculu	0.995	0.621	0.960	3.4e-228
RGD|620240	734	Rps27a "ribosomal protein S27a	0.995	0.621	0.960	3.4e-228
RGD|621562	734	Ubb "ubiquitin B" [Rattus norv	0.995	0.621	0.960	3.4e-228
RGD|68344	734	Uba52 "ubiquitin A-52 residue	0.995	0.621	0.960	3.4e-228
UNIPROTKB|P0CG48	685	UBC "Polyubiquitin-C" [Homo sa	0.995	0.665	0.960	3.4e-228

TAIR|locus:2115663 UBQ10 "AT4G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 2274 (805.5 bits), Expect = 7.9e-236, P = 7.9e-236
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456

GO:0006464 "cellular protein modification process" evidence=ISS;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0007568 "aging" evidence=IEP

WB|WBGene00006727 ubq-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 2210 (783.0 bits), Expect = 4.8e-229, P = 4.8e-229
 Identities = 437/457 (95%), Positives = 456/457 (99%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTL GKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   441 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 500

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKA
Sbjct:   501 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 560

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   561 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 620

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   621 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   681 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 740

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   741 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ 800

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG+
Sbjct:   801 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGD 837

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

ZFIN|ZDB-GENE-061110-88 ubc "ubiquitin C" [Danio rerio (taxid:7955)]

 Score = 2203 (780.6 bits), Expect = 2.6e-228, P = 2.6e-228
 Identities = 438/457 (95%), Positives = 451/457 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   317 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   377 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   437 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 496

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 457
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG+
Sbjct:   497 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGK 533

GO:0003674 "molecular_function" evidence=ND

RGD|621244 Ubc "ubiquitin C" [Rattus norvegicus (taxid:10116)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   425 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   485 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   545 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 604

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   605 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 664

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   665 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 724

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   725 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760

GO:0002020 "protease binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0010992 "ubiquitin homeostasis" evidence=ISO

FB|FBgn0003943 Ubi-p63E "Ubiquitin-63E" [Drosophila melanogaster (taxid:7227)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   425 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   485 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   545 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 604

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   605 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 664

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   665 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 724

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   725 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760

GO:0009987 "cellular process" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

MGI|MGI:98889 Ubc "ubiquitin C" [Mus musculus (taxid:10090)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 588

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684

GO:0002020 "protease binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IGI

RGD|620240 Rps27a "ribosomal protein S27a" [Rattus norvegicus (taxid:10116)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 588

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0015935 "small ribosomal subunit" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

RGD|621562 Ubb "ubiquitin B" [Rattus norvegicus (taxid:10116)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 588

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684

GO:0007141 "male meiosis I" evidence=ISO

GO:0007144 "female meiosis I" evidence=ISO

GO:0008584 "male gonad development" evidence=ISO

GO:0008585 "female gonad development" evidence=ISO

GO:0010992 "ubiquitin homeostasis" evidence=ISO

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=ISO

GO:0060612 "adipose tissue development" evidence=ISO

GO:0060613 "fat pad development" evidence=ISO

GO:0072520 "seminiferous tubule development" evidence=ISO

GO:0097009 "energy homeostasis" evidence=ISO

RGD|68344 Uba52 "ubiquitin A-52 residue ribosomal protein fusion product 1" [Rattus norvegicus (taxid:10116)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 588

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684

GO:0005622 "intracellular" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

UNIPROTKB|P0CG48 UBC "Polyubiquitin-C" [Homo sapiens (taxid:9606)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 588

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0002020 "protease binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0007220 "Notch receptor processing" evidence=TAS

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=TAS

GO:0007254 "JNK cascade" evidence=TAS

GO:0008063 "Toll signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0033554 "cellular response to stress" evidence=TAS

GO:0034130 "toll-like receptor 1 signaling pathway" evidence=TAS

GO:0034134 "toll-like receptor 2 signaling pathway" evidence=TAS

GO:0034138 "toll-like receptor 3 signaling pathway" evidence=TAS

GO:0034142 "toll-like receptor 4 signaling pathway" evidence=TAS

GO:0035666 "TRIF-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0046788 "egress of virus within host cell" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050852 "T cell receptor signaling pathway" evidence=TAS

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=TAS

GO:0051403 "stress-activated MAPK cascade" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=TAS

GO:0070423 "nucleotide-binding oligomerization domain containing signaling pathway" evidence=TAS

GO:0071456 "cellular response to hypoxia" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000080 "G1 phase of mitotic cell cycle" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0000187 "activation of MAPK activity" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002224 "toll-like receptor signaling pathway" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0002756 "MyD88-independent toll-like receptor signaling pathway" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CG80	UBIQI_DICDI	No assigned EC number	0.9473	0.6637	0.9967	no	no
P0CG81	UBIQH_DICDI	No assigned EC number	0.9473	0.8296	0.9973	no	no
P0CG82	UBIQP_TETPY	No assigned EC number	0.9448	0.8318	1.0	N/A	no
P0CH04	UBI1P_PETCR	No assigned EC number	0.9978	1.0	1.0	N/A	no
P62976	UBIQP_CRIGR	No assigned EC number	0.9605	0.9956	0.6930	yes	no
P0CG85	UBI1P_NICSY	No assigned EC number	1.0	0.9956	0.9978	N/A	no
P69315	UBIQP_LINUS	No assigned EC number	0.9967	0.6659	1.0	N/A	no
Q58G87	UBQ3_ORYSJ	No assigned EC number	0.9947	0.8318	1.0	no	no
P0CG88	UBIQJ_DICDI	No assigned EC number	0.9473	0.6637	0.9967	no	no
P42739	UBIQP_ACECL	No assigned EC number	0.9550	0.9235	1.0	N/A	no
P0CG84	UBI4P_NICSY	No assigned EC number	0.9973	0.8231	1.0	N/A	no
P0CG71	UBIQ1_CAEEL	No assigned EC number	0.9541	1.0	0.5465	yes	no
P59669	UBIQP_GEOCY	No assigned EC number	0.9583	0.9956	0.9978	N/A	no
P0CH27	RL402_TRYCR	No assigned EC number	0.9704	0.6659	0.8567	N/A	no
P0CG72	UBI4P_SCHPO	No assigned EC number	0.9712	0.8340	1.0	yes	no
P0CG75	UBI4P_KLULA	No assigned EC number	0.9711	0.8318	1.0	yes	no
P0CG74	UBI4P_CANAX	No assigned EC number	0.9704	0.6659	1.0	N/A	no
P0CG76	UBIQA_DICDI	No assigned EC number	0.9394	0.8296	0.9973	no	no
P0CG79	UBIQG_DICDI	No assigned EC number	0.9448	0.8318	1.0	no	no
P0CG78	UBIQF_DICDI	No assigned EC number	0.9473	0.9956	0.8555	yes	no
P0CH05	UBI2P_PETCR	No assigned EC number	0.9978	1.0	1.0	N/A	no
P0CG50	UBC_MOUSE	No assigned EC number	0.9605	0.9956	0.6212	yes	no
P0CH28	UBC_BOVIN	No assigned EC number	0.9605	0.9956	0.6608	yes	no
P0CG55	UBB_SHEEP	No assigned EC number	0.9540	0.6659	1.0	N/A	no
P0CG54	UBB_CAVPO	No assigned EC number	0.9542	0.6681	0.9839	yes	no
Q1EC66	UBQ3_ARATH	No assigned EC number	0.9967	0.6681	1.0	no	no
P0CG48	UBC_HUMAN	No assigned EC number	0.9605	0.9956	0.6656	yes	no
Q3E7T8	UBQ14_ARATH	No assigned EC number	0.9967	0.6659	1.0	no	no
Q9FHQ6	UBQ9_ARATH	No assigned EC number	0.9022	0.6681	0.9503	no	no
P0CG70	UBI4P_NEUCR	No assigned EC number	0.9704	0.6659	1.0	N/A	no
Q8MKD1	UBB_HORSE	No assigned EC number	0.9540	0.6659	1.0	no	no
P69309	UBIQP_AVEFA	No assigned EC number	0.9967	0.6659	1.0	N/A	no
P42740	UBIQP_AGLNE	No assigned EC number	0.9539	0.9956	0.9978	N/A	no
P69322	UBIQP_PEA	No assigned EC number	0.9973	0.8318	1.0	N/A	no
P0CG66	UBC_GORGO	No assigned EC number	0.9605	0.9956	0.7487	N/A	no
P0CH33	UBQ11_ARATH	No assigned EC number	0.9956	0.5	1.0	no	no
P69325	UBIQP_SOYBN	No assigned EC number	0.9967	0.6659	1.0	no	no
P0CG62	UBB_CHICK	No assigned EC number	0.9605	0.6637	0.9967	yes	no
P0CG63	UBI4P_YEAST	No assigned EC number	0.9736	0.8296	0.9973	yes	no
P0CG61	UBC_PONPY	No assigned EC number	0.9605	0.9956	0.5992	N/A	no
P0CH32	UBQ4_ARATH	No assigned EC number	0.9973	0.8340	1.0	no	no
P0CG49	UBB_MOUSE	No assigned EC number	0.9605	0.6637	0.9967	no	no
P0CG64	UBC_PANTR	No assigned EC number	0.9605	0.9956	0.5992	yes	no
Q63429	UBC_RAT	No assigned EC number	0.9605	0.9956	0.5629	yes	no
P0CG68	UBC_PIG	No assigned EC number	0.9605	0.9956	0.8555	yes	no
P0CG69	UBIQP_DROME	No assigned EC number	0.9605	0.9956	0.5976	yes	no
P0CG53	UBB_BOVIN	No assigned EC number	0.9573	0.6659	1.0	no	no
P0CG51	UBB_RAT	No assigned EC number	0.9605	0.6637	0.9967	no	no
Q8H159	UBQ10_ARATH	No assigned EC number	1.0	0.9956	0.9978	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-27
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-27
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-27
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-27
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-27
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 2e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1  IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 61 IQKESTLHLVLR 72
          IQ  ST+HLVLR
Sbjct: 61 IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 2e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 137 IQKESTLHLVLR 148
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 2e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 213 IQKESTLHLVLR 224
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 2e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 289 IQKESTLHLVLR 300
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 2e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 365 IQKESTLHLVLR 376
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 2e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 441 IQKESTLHLVLR 452
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65
          KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1  KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 66 TLHLVLRLR 74
          TLHLVLRLR
Sbjct: 61 TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 142 TLHLVLRLR 150
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 217
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 218 TLHLVLRLR 226
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 234 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 293
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 294 TLHLVLRLR 302
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 369
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 370 TLHLVLRLR 378
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 445
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 446 TLHLVLRLR 454
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 97.9 bits (244), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          ++  S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 97.9 bits (244), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 97.9 bits (244), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 97.9 bits (244), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 289 IQKESTLHLVLRLRGG 304
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 97.9 bits (244), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 365 IQKESTLHLVLRLRGG 380
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 97.9 bits (244), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 441 IQKESTLHLVLRLRGG 456
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 4  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
           VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1  TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 64 ESTLHLVLR 72
           STLHLVLR
Sbjct: 61 GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 80  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 140 ESTLHLVLR 148
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 216 ESTLHLVLR 224
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 291
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 292 ESTLHLVLR 300
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 367
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 368 ESTLHLVLR 376
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 443
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 444 ESTLHLVLR 452
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1  MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          +   ST+H+VL+LRGG
Sbjct: 61 VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 289 IQKESTLHLVLRLRGG 304
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 365 IQKESTLHLVLRLRGG 380
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 441 IQKESTLHLVLRLRGG 456
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 61  IQKESTLHLVLRLRGG 76
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 137 IQKESTLHLVLRLRGG 152
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 213 IQKESTLHLVLRLRGG 228
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 289 IQKESTLHLVLRLRGG 304
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 365 IQKESTLHLVLRLRGG 380
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 441 IQKESTLHLVLRLRGG 456
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 59
          ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1  IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 60 NIQKESTLHLVL 71
          +I+   T+ +V+
Sbjct: 61 DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 135
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 136 NIQKESTLHLVL 147
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 211
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 212 NIQKESTLHLVL 223
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 287
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 288 NIQKESTLHLVL 299
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 363
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 364 NIQKESTLHLVL 375
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 439
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 440 NIQKESTLHLVL 451
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
          M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1  MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 59 YNI 61
          Y I
Sbjct: 61 YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 135 YNI 137
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 211 YNI 213
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 287 YNI 289
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 362
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 363 YNI 365
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 438
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 439 YNI 441
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1  IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 61 IQKESTLHLVLR 72
          ++   T+HLV R
Sbjct: 61 VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 137 IQKESTLHLVLR 148
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 213 IQKESTLHLVLR 224
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 289 IQKESTLHLVLR 300
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 365 IQKESTLHLVLR 376
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 441 IQKESTLHLVLR 452
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 4  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
           VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1  KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 64 ESTLHLVLR 72
             L LV R
Sbjct: 61 GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 80  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 140 ESTLHLVLR 148
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 216 ESTLHLVLR 224
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 291
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 292 ESTLHLVLR 300
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 367
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 368 ESTLHLVLR 376
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 443
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 444 ESTLHLVLR 452
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 3  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
          ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1  VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 63 KESTLHLVLR 72
          ++S LH V R
Sbjct: 61 QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 79  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 139 KESTLHLVLR 148
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 215 KESTLHLVLR 224
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 291 KESTLHLVLR 300
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 366
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 367 KESTLHLVLR 376
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 442
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 443 KESTLHLVLR 452
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1  MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 61 IQKESTLHLVLRLRGG 76
          +++  TL +  RL GG
Sbjct: 59 VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 137 IQKESTLHLVLRLRGG 152
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 213 IQKESTLHLVLRLRGG 228
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 289 IQKESTLHLVLRLRGG 304
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 365 IQKESTLHLVLRLRGG 380
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 441 IQKESTLHLVLRLRGG 456
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1  MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 61 IQKESTLHLVLR 72
          I   + L+LV+R
Sbjct: 61 IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 137 IQKESTLHLVLR 148
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 213 IQKESTLHLVLR 224
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 289 IQKESTLHLVLR 300
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 365 IQKESTLHLVLR 376
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 441 IQKESTLHLVLR 452
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5  LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 68 HLVLRLRGG 76
          HL L+ RGG
Sbjct: 65 HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 144 HLVLRLRGG 152
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 220 HLVLRLRGG 228
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 296 HLVLRLRGG 304
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 371
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 372 HLVLRLRGG 380
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 447
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 448 HLVLRLRGG 456
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1  MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 59 YNIQKESTLHLVLR 72
          YN+     + L++R
Sbjct: 61 YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 77  MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 135 YNIQKESTLHLVLR 148
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 153 MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 211 YNIQKESTLHLVLR 224
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 229 MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 287 YNIQKESTLHLVLR 300
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 305 MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 363 YNIQKESTLHLVLR 376
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 381 MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 439 YNIQKESTLHLVLR 452
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 3  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
          I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1  ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 63 KESTLHLVLRLRGG 76
             T+ + LRLRGG
Sbjct: 61 PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 79  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 139 KESTLHLVLRLRGG 152
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 215 KESTLHLVLRLRGG 228
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 291 KESTLHLVLRLRGG 304
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 366
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 367 KESTLHLVLRLRGG 380
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 442
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 443 KESTLHLVLRLRGG 456
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
              +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1  DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1  MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 58 DYNI 61
          +Y I
Sbjct: 61 EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 134 DYNI 137
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 210 DYNI 213
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 286 DYNI 289
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 362 DYNI 365
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 437
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 438 DYNI 441
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 5  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
          V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3  VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 65 STLHLVL 71
            + +++
Sbjct: 63 YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 81  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 141 STLHLVL 147
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 216
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 217 STLHLVL 223
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 292
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 293 STLHLVL 299
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 368
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 369 STLHLVL 375
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 444
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 445 STLHLVL 451
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1  IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 61 IQKESTLHLVLR 72
          I+   T+HLV++
Sbjct: 60 IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 137 IQKESTLHLVLR 148
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 213 IQKESTLHLVLR 224
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 289 IQKESTLHLVLR 300
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 365 IQKESTLHLVLR 376
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 441 IQKESTLHLVLR 452
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69
          G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9  GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 70 V 70
          +
Sbjct: 69 L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 146 V 146
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 222 V 222
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 298 V 298
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 374 V 374
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 450 V 450
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 62
            T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9  ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 138
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 214
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 290
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 366
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 442
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 133
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 134 DYNIQKESTLHLVLR 148
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 209
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 210 DYNIQKESTLHLVLR 224
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 285
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 286 DYNIQKESTLHLVLR 300
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 361
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 362 DYNIQKESTLHLVLR 376
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 437
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 438 DYNIQKESTLHLVLR 452
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 5  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLADYNIQ 62
          VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L    + 
Sbjct: 7  VKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLG 66

Query: 63 KESTLHLVLR 72
            ST+ LV++
Sbjct: 67 PGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 18 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 64
            + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21 SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 65 STLHLVLR 72
            +H+V+R
Sbjct: 81 IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 94  ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 140
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 141 STLHLVLR 148
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 170 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 216
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 217 STLHLVLR 224
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 246 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 292
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 293 STLHLVLR 300
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 322 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 368
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 369 STLHLVLR 376
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 398 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 444
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 445 STLHLVLR 452
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2  MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 61 IQKESTLHLVLRLRGGM 77
          +   S L LV  +  G+
Sbjct: 61 LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 137 IQKESTLHLVLRLRGGM 153
           +   S L LV  +  G+
Sbjct: 61  LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 213 IQKESTLHLVLRLRGGM 229
           +   S L LV  +  G+
Sbjct: 61  LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 289 IQKESTLHLVLRLRGGM 305
           +   S L LV  +  G+
Sbjct: 61  LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 365 IQKESTLHLVLRLRGGM 381
           +   S L LV  +  G+
Sbjct: 61  LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 441 IQKESTLHLV 450
           +   S L LV
Sbjct: 61  LGDGSKLTLV 70

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.83
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.83
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.82
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.78
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.77
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.76
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.75
PTZ00044	76	ubiquitin; Provisional	99.74
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.74
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.74
PTZ00044	76	ubiquitin; Provisional	99.73
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.73
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.71
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.71
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.71
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.7
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.7
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.7
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.69
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.68
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.68
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.68
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.68
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.67
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.67
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.66
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.66
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.66
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.65
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.64
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.64
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.64
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.63
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.63
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.62
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.62
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.62
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.6
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.59
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.59
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.59
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.58
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.58
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.58
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.56
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.56
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.53
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.51
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.51
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.5
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.47
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.45
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.43
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.41
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.38
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.37
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.37
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	99.35
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.35
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.34
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.32
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.32
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.31
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.3
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.29
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.21
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.21
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.14
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.11
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.11
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.11
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.09
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	99.06
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.04
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.86
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.83
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.79
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.78
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.73
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.68
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.64
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.62
PLN02560	308	enoyl-CoA reductase	98.6
PLN02560	308	enoyl-CoA reductase	98.58
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.57
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.57
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.57
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.56
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.44
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.39
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.24
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.23
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	98.21
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.2
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	97.97
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	97.93
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	97.93
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.87
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.79
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.64
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	97.63
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	97.56
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.47
KOG4495	110	consensus RNA polymerase II transcription elongati	97.44
KOG4495	110	consensus RNA polymerase II transcription elongati	97.42
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	97.12
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.05
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.0
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.97
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.96
PF13019	162	Telomere_Sde2: Telomere stability and silencing	96.89
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.84
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	96.81
PF13019	162	Telomere_Sde2: Telomere stability and silencing	96.66
COG5417	81	Uncharacterized small protein [Function unknown]	96.51
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.48
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	96.27
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	96.22
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	96.09
KOG0013	231	consensus Uncharacterized conserved protein [Funct	95.84
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	95.77
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	95.73
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	95.73
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	95.66
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	95.61
KOG0013	231	consensus Uncharacterized conserved protein [Funct	95.44
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	95.38
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	95.22
KOG4583	391	consensus Membrane-associated ER protein involved	95.2
COG5417	81	Uncharacterized small protein [Function unknown]	94.96
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	94.94
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	94.88
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	94.86
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	94.77
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	94.47
KOG1639	297	consensus Steroid reductase required for elongatio	94.2
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	93.62
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	93.61
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	93.54
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	93.51
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	93.46
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	93.38
KOG4583	391	consensus Membrane-associated ER protein involved	93.22
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	93.1
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	92.77
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	92.45
KOG1639	297	consensus Steroid reductase required for elongatio	91.82
PRK06437	67	hypothetical protein; Provisional	91.75
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	91.75
PRK06437	67	hypothetical protein; Provisional	90.12
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	90.09
PRK08364	70	sulfur carrier protein ThiS; Provisional	89.54
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	89.37
smart00455	70	RBD Raf-like Ras-binding domain.	89.1
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	89.08
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	88.93
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	88.4
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	88.11
smart00455	70	RBD Raf-like Ras-binding domain.	88.02
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	88.01
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	87.31
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	86.61
PF08337	539	Plexin_cytopl: Plexin cytoplasmic RasGAP domain; I	86.35
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	86.15
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	86.09
KOG4261	1003	consensus Talin [Cytoskeleton]	86.06
PRK08364	70	sulfur carrier protein ThiS; Provisional	84.98
cd01818	77	TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo	84.98
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	84.92
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	84.1
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	83.82
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	83.58
TIGR03028	239	EpsE polysaccharide export protein EpsE. Sequences	82.85
PRK06488	65	sulfur carrier protein ThiS; Validated	82.75
KOG0012	380	consensus DNA damage inducible protein [Replicatio	81.96
PF14453	57	ThiS-like: ThiS-like ubiquitin	81.84
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	81.59
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	81.59
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	81.55
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	81.17
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	81.01
PRK06488	65	sulfur carrier protein ThiS; Validated	80.77

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.83  E-value=3.2e-20  Score=149.98  Aligned_cols=95  Identities=44%  Similarity=0.647  Sum_probs=92.3

Q ss_pred             cccccCCCeEEEEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCC
Q 012714          362 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI  441 (458)
Q Consensus       362 ~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i  441 (458)
                      .+++.+-+++|++.++++.|+|+|++..|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I   88 (103)
T cd01802           9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI   88 (103)
T ss_pred             ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEecCC
Q 012714          442 QKESTLHLVLRLRGG  456 (458)
Q Consensus       442 ~~~~~i~~~~~~~~g  456 (458)
                      ++|++||++++.+||
T Consensus        89 ~~~stL~l~~~l~GG  103 (103)
T cd01802          89 SEGCTLKLVLAMRGG  103 (103)
T ss_pred             CCCCEEEEEEecCCC
Confidence            999999999999887

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.83  E-value=4e-20  Score=149.37  Aligned_cols=99  Identities=41%  Similarity=0.597  Sum_probs=93.8

Q ss_pred             CCCccccccccccccceeEeecCCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcch
Q 012714           53 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL  132 (458)
Q Consensus        53 ~~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL  132 (458)
                      .+....+++.+.+++|+++++++.|+|+||+++|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL   83 (103)
T cd01802           4 KKEPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCL   83 (103)
T ss_pred             ccCCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcH
Confidence            34466789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccceeEEEEeec
Q 012714          133 ADYNIQKESTLHLVLRLRG  151 (458)
Q Consensus       133 ~~~~i~~~s~i~l~~~~~~  151 (458)
                      ++|+|.++++||++++.++
T Consensus        84 ~dy~I~~~stL~l~~~l~G  102 (103)
T cd01802          84 NDYNISEGCTLKLVLAMRG  102 (103)
T ss_pred             HHcCCCCCCEEEEEEecCC
Confidence            9999999999999988655

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=1.2e-21  Score=151.00  Aligned_cols=76  Identities=99%  Similarity=1.337  Sum_probs=74.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |++|++++.|+|++++|+|||||+++|.+|++++|||+++|+|+|+|++|+|++|+++|+|+..||+|++++++++
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999998876

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=1e-19  Score=151.76  Aligned_cols=77  Identities=95%  Similarity=1.308  Sum_probs=75.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCCe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM   77 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~   77 (458)
                      |+|||+++.|++++++++++|||+++|.|||+++|||+++|+|+|.|++|+|+++++||+|+..||+||+++++++.
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~   77 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA   77 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988763

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.77  E-value=6.7e-19  Score=134.52  Aligned_cols=73  Identities=36%  Similarity=0.653  Sum_probs=71.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|++.+|++++++|++++||.+||++|+++.|+|+++|+|+|+|++|+|+++|++|+|.+++++|+++++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999874

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.76  E-value=1e-18  Score=133.45  Aligned_cols=73  Identities=40%  Similarity=0.596  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |||||++.  ++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++++|+++++.+
T Consensus         1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G   73 (74)
T cd01793           1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG   73 (74)
T ss_pred             CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            89999984  89999999999999999999999999999999999999999999999999999999999998765

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.75  E-value=6.7e-18  Score=128.94  Aligned_cols=74  Identities=41%  Similarity=0.618  Sum_probs=71.2

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |+|+||+.  +.+.++|+|++||+++|++|+++.|+|+++|+|+|+|+.|+|++||++|+|+++++||++++.+||
T Consensus         1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            78999984  678999999999999999999999999999999999999999999999999999999999999987

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PTZ00044 ubiquitin; Provisional

Probab=99.74  E-value=3.4e-18  Score=131.53  Aligned_cols=75  Identities=49%  Similarity=0.803  Sum_probs=72.8

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|||++++|+++++++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.+++++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g   75 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG   75 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988654

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.74  E-value=2.8e-18  Score=131.72  Aligned_cols=74  Identities=36%  Similarity=0.634  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCcE-EEEE-eecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714            1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (458)
Q Consensus         1 ~~i~~~~~~g~~-~~~~-v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~   74 (458)
                      |+|||++++|++ ++++ +.+++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+++.
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            999999999997 7895 8999999999999999999999999999999999999999999999999999998764

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.74  E-value=1.1e-17  Score=127.89  Aligned_cols=73  Identities=36%  Similarity=0.653  Sum_probs=71.0

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      |+|+||+.+|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|.|+.+|++|+|++|++||++.+.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999874

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>PTZ00044 ubiquitin; Provisional

Probab=99.73  E-value=1.6e-17  Score=127.80  Aligned_cols=76  Identities=50%  Similarity=0.822  Sum_probs=74.4

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |+|+||+.+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++++|++||++++.+||
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999887

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.73  E-value=1.8e-17  Score=127.26  Aligned_cols=75  Identities=36%  Similarity=0.618  Sum_probs=71.5

Q ss_pred             eeEEEEcCCCcE-EEEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          381 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       381 ~~i~vk~~~g~~-~~~~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      |+|+||+.+|+. +.++ +++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++||+++|..+
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~   77 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP   77 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            799999999997 6895 89999999999999999999999999999999999999999999999999999998764

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.71  E-value=3.2e-17  Score=125.15  Aligned_cols=74  Identities=32%  Similarity=0.618  Sum_probs=72.0

Q ss_pred             EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |+||++.|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|.|+++|++|+|+++++++++.+..||
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg   74 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG   74 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999998886

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.71  E-value=1.3e-17  Score=127.30  Aligned_cols=73  Identities=32%  Similarity=0.597  Sum_probs=70.5

Q ss_pred             EEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |||+++.|++++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|.+++++++.+++.+
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g   73 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG   73 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999987654

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=4.4e-18  Score=116.69  Aligned_cols=70  Identities=54%  Similarity=0.911  Sum_probs=68.2

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccccccccccee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~   70 (458)
                      |.|-|+|++|+.+.++|+|.|+|+.+|++|++++||||.+|+|+|.|+++.|+.|-++|+...+|.+|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            7789999999999999999999999999999999999999999999999999999999999999999984

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.70  E-value=5.7e-17  Score=124.81  Aligned_cols=76  Identities=25%  Similarity=0.477  Sum_probs=73.7

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      +|+|+|++..|+.+.++|++++||++||++|+++.|+++++|+|+|+|+.|+|+ +|++||+++|++||++...++|
T Consensus         1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~   76 (78)
T cd01804           1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG   76 (78)
T ss_pred             CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence            589999999999999999999999999999999999999999999999999999 9999999999999999998887

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.70  E-value=7.3e-17  Score=124.14  Aligned_cols=76  Identities=55%  Similarity=0.965  Sum_probs=74.3

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |+|+|++.+|+.+.+++++++||++||++|+++.|+|++.|+|+|+|+.|.|+.+|++|++++|++||++.+.+||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999887

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.70  E-value=6.5e-17  Score=122.19  Aligned_cols=72  Identities=24%  Similarity=0.356  Sum_probs=69.2

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      .|.|+|++..|+.+.++|+|++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++||+..
T Consensus         1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence            378999999999999999999999999999999999999999999999999999999999999999999864

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01803 Ubiquitin Ubiquitin

Probab=99.69  E-value=1.1e-16  Score=123.09  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=74.3

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |+|+|++.+|+.+.++|++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++||++++.+||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999887

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.68  E-value=1e-16  Score=123.31  Aligned_cols=75  Identities=55%  Similarity=0.948  Sum_probs=72.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++++|+++.++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++++.++
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g   75 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG   75 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988654

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.68  E-value=1.6e-16  Score=120.05  Aligned_cols=71  Identities=24%  Similarity=0.378  Sum_probs=68.7

Q ss_pred             eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~  147 (458)
                      |.|+|++..|+.+.+++++++||++||++|+++.|+|+++|||+|+|+.|+|+.+|++|||.+|++|||..
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence            78999999999999999999999999999999999999999999999999999999999999999999864

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01803 Ubiquitin Ubiquitin

Probab=99.68  E-value=1e-16  Score=123.31  Aligned_cols=75  Identities=96%  Similarity=1.311  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++++|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.+++.+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g   75 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   75 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999998765

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.68  E-value=2.6e-16  Score=121.35  Aligned_cols=74  Identities=38%  Similarity=0.692  Sum_probs=71.6

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC--CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~--~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      |+|+|++.+|+.+.++|++++||.+||++|++..|+  |+++|+|+|+|+.|+|+.+|++|++++|++|+++++++
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~   76 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP   76 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence            789999999999999999999999999999999999  99999999999999999999999999999999998865

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.67  E-value=1.8e-16  Score=119.07  Aligned_cols=69  Identities=36%  Similarity=0.575  Sum_probs=66.6

Q ss_pred             EEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       384 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      .||..+|+.+.++|+|++||+++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~~   70 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIVN   70 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEeC
Confidence            578999999999999999999999999999999999999999999999999999999999999999874

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.67  E-value=9.2e-17  Score=121.31  Aligned_cols=70  Identities=39%  Similarity=0.733  Sum_probs=67.8

Q ss_pred             EEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         3 i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |||++++|+++++++++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++|++|++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999753

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.66  E-value=2.3e-16  Score=119.11  Aligned_cols=70  Identities=39%  Similarity=0.733  Sum_probs=67.5

Q ss_pred             EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      |+||+..|+.+.++|++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|+|++|+++|++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            5789999999999999999999999999999999999999999999999999999999999999998764

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.66  E-value=3.5e-16  Score=120.45  Aligned_cols=76  Identities=25%  Similarity=0.477  Sum_probs=72.3

Q ss_pred             CeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeecc
Q 012714           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (458)
Q Consensus        76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~~  152 (458)
                      +|+|+||+..|+.+++++++++||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++||+.+|++|+++....++
T Consensus         1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~   76 (78)
T cd01804           1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG   76 (78)
T ss_pred             CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence            589999999999999999999999999999999999999999999999999999 9999999999999999877654

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.66  E-value=1.9e-16  Score=118.92  Aligned_cols=69  Identities=36%  Similarity=0.587  Sum_probs=66.4

Q ss_pred             EEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus        79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~  147 (458)
                      +.||+++|+++++++++++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+++
T Consensus         1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            367899999999999999999999999999999999999999999999999999999999999999975

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.65  E-value=5e-16  Score=117.76  Aligned_cols=72  Identities=24%  Similarity=0.240  Sum_probs=64.8

Q ss_pred             ceeEEEEcCCCcEEEE--EecCCCcHHHHHHHHHhhcC--CCCCceEEEEcCeecCCCCCccccC--CCCCCEEEEEE
Q 012714          380 GMQIFVKTLTGKTITL--EVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL  451 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~--~v~~~~tV~~lK~~i~~~~~--~~~~~q~Li~~G~~L~d~~tL~~~~--i~~~~~i~~~~  451 (458)
                      ++.++||+++++.+.+  ++++++||++||++|++..+  .++++|||||+||+|+|++||++|.  +++|.+||+++
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            4789999999999554  45899999999999999875  5689999999999999999999996  99999999986

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=2e-17  Score=127.64  Aligned_cols=76  Identities=99%  Similarity=1.337  Sum_probs=73.2

Q ss_pred             eEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEEEEeecCc
Q 012714          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  304 (458)
Q Consensus       229 ~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~~~~~~~  304 (458)
                      +.+++++..|+|+++++++++||.+||++|++.+|||+++|+|+|+|+.|+|++|+++|||+..+|||+.+++.++
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999998876

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.8e-16  Score=108.79  Aligned_cols=70  Identities=54%  Similarity=0.911  Sum_probs=67.9

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      |.|.|++++|+.+.++++|+++|+.+|+.++++.|+||.+|||+|.|+.+.|+.|-++|++..|+++|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            6789999999999999999999999999999999999999999999999999999999999999999974

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.64  E-value=6.3e-16  Score=119.20  Aligned_cols=72  Identities=39%  Similarity=0.725  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCC--CCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gi--p~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |+|+|++.+|+++++++.+++||.++|++|++..|+  |+++|+|+|+|+.|+|+.+|++|++.+++++++.++
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~   74 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS   74 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence            899999999999999999999999999999999999  999999999999999999999999999999998765

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.63  E-value=8.3e-16  Score=119.13  Aligned_cols=74  Identities=31%  Similarity=0.415  Sum_probs=71.5

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEE--EEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~L--i~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      |+|+|++.+|+.+.+++++++||.+||++|++..|+|+++|+|  +|+|+.|.|+.+|++||+++|++||+++++-
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~   78 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC   78 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence            8999999999999999999999999999999999999999999  9999999999999999999999999999863

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.63  E-value=1.1e-15  Score=115.20  Aligned_cols=69  Identities=57%  Similarity=0.970  Sum_probs=66.3

Q ss_pred             EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714          386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       386 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      |+++|+.+.++|++++||.+||++|+++.|+|++.|+|+|+|++|+|+.+|++|+|++|++|++++|+|
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~   69 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR   69 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence            578999999999999999999999999999999999999999999999999999999999999988764

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.62  E-value=7.4e-16  Score=117.18  Aligned_cols=72  Identities=44%  Similarity=0.704  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |+|+|++++|+++++++++++||.++|++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++.+
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            899999999999999999999999999999999999999999999999999999999999999999998753

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.62  E-value=1.9e-15  Score=114.93  Aligned_cols=72  Identities=44%  Similarity=0.704  Sum_probs=69.5

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      |+|+||+.+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++||+++|++||++.|
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            689999999999999999999999999999999999999999999999999999999999999999998764

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.62  E-value=1.9e-15  Score=114.39  Aligned_cols=71  Identities=34%  Similarity=0.489  Sum_probs=67.3

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      ++|+||+.+|+ ..+++++++||++||++|+++.|+++++|+|+|+|+.|.|+++|++||+++|++||++.|
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            47899999997 489999999999999999999999999999999999999999999999999999999864

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=6.1e-16  Score=129.22  Aligned_cols=77  Identities=95%  Similarity=1.308  Sum_probs=74.1

Q ss_pred             eEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEEEEeecCce
Q 012714          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  305 (458)
Q Consensus       229 ~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~~~~~~~~  305 (458)
                      |.|+|++..|+++.+++.+++||..+|++|++.+|||+++|+|+|.|+.|+|+++|+||+|+..+|+|++.+++++-
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~   77 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA   77 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999988774

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.59  E-value=1.4e-15  Score=117.89  Aligned_cols=72  Identities=32%  Similarity=0.451  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEE--EEeeeeccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l--~~~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |+|+|++.+|+++++++++++||.+||++|++..|+|+++|+|  +|+|+.|+|+.+|++|++.++++++++++
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~   76 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ   76 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence            7899999999999999999999999999999999999999999  89999999999999999999999999876

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.59  E-value=2.2e-15  Score=114.06  Aligned_cols=71  Identities=34%  Similarity=0.489  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |.|+|++.+|+ .++++++++||.+||++|+++.|+|+.+|+|+|+|+.|+|+.+|++|++.+++++|++++
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            68999999997 499999999999999999999999999999999999999999999999999999999864

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.59  E-value=3.7e-15  Score=113.02  Aligned_cols=72  Identities=25%  Similarity=0.271  Sum_probs=64.4

Q ss_pred             CeEEEEEecCCcE--EEEEEeCCCCHHHHHHHHhHHhC--CCCCCeEEEecCcccCCCcchhhcc--cccccceeEEE
Q 012714           76 GMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL  147 (458)
Q Consensus        76 ~~~i~vk~~~g~~--~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~~~--i~~~s~i~l~~  147 (458)
                      ++.++||+++|+.  |++++++++||.+||++|++..+  .|+++|+|||+||.|+|+.+|++|.  +.++.+|||+.
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            4789999999998  55555899999999999999874  5689999999999999999999996  99999999985

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.58  E-value=1.2e-14  Score=114.34  Aligned_cols=79  Identities=18%  Similarity=0.439  Sum_probs=76.5

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      +..|.|.|++.+|+...+.|.+++++..||++++++.|+|+++|+|+|+|+.|.++.|+++|++++||+|+++.+.+||
T Consensus         9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763           9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999999999997

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.58  E-value=5.3e-15  Score=113.40  Aligned_cols=70  Identities=33%  Similarity=0.669  Sum_probs=67.2

Q ss_pred             CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       388 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      ++|+.+.++|++++||.+||++|+...|+|++.|+|+|+|+.|+|+.+|++|++++|++||++.+.+||.
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~   74 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR   74 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence            4689999999999999999999999999999999999999999999999999999999999999998874

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.58  E-value=5.7e-15  Score=111.56  Aligned_cols=67  Identities=36%  Similarity=0.561  Sum_probs=64.0

Q ss_pred             EEEEcC-CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC-CCccccCCCCCCEEEE
Q 012714          383 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHL  449 (458)
Q Consensus       383 i~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~-~tL~~~~i~~~~~i~~  449 (458)
                      |+|++. .|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|.|+ .+|++|++++|++||+
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l   69 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL   69 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence            578999 899999999999999999999999999999999999999999987 6899999999999986

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.56  E-value=9.3e-15  Score=110.11  Aligned_cols=68  Identities=56%  Similarity=0.962  Sum_probs=65.6

Q ss_pred             EecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEe
Q 012714           82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (458)
Q Consensus        82 k~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~  149 (458)
                      |+++|+.+++++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+|++|+++.++
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence            67899999999999999999999999999999999999999999999999999999999999998765

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.56  E-value=4.2e-15  Score=112.30  Aligned_cols=68  Identities=35%  Similarity=0.543  Sum_probs=64.6

Q ss_pred             EEEEcC-CCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCC-CCcccccccccccccee
Q 012714            3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV   70 (458)
Q Consensus         3 i~~~~~-~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~-~tl~~y~i~~~sti~l~   70 (458)
                      |+|++. +|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ .++++|+|.+++++||.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            578999 999999999999999999999999999999999999999999887 68999999999999874

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.53  E-value=1.3e-14  Score=111.30  Aligned_cols=68  Identities=32%  Similarity=0.655  Sum_probs=65.4

Q ss_pred             CCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         8 ~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      ++|++++++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+++|++|++.+++++|+.+++++
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g   72 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG   72 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence            68999999999999999999999999999999999999999999999999999999999999988755

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.51  E-value=4.4e-14  Score=107.02  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=66.7

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      |+|+||+. |+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++|++++|++|+++.
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            57899997 99999999999999999999999999999999999999999999999999999999998863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.51  E-value=4.7e-14  Score=110.98  Aligned_cols=76  Identities=18%  Similarity=0.467  Sum_probs=73.1

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++.+|++++++|.+++|+..||++++++.|+|+++|+|+|+|+.|.++.|+.+|++.++++|++++++.++
T Consensus        12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763          12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999887653

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.50  E-value=5.1e-14  Score=106.94  Aligned_cols=69  Identities=23%  Similarity=0.440  Sum_probs=65.4

Q ss_pred             eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEe---cCcccCCCcchhhcccccccceeEE
Q 012714           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV  146 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d~~tL~~~~i~~~s~i~l~  146 (458)
                      |.|.|| ++|+.+++++++++||++||++|++.+|+|+++|+|+|   .|+.|+|+.+|++|++++|+.|+|+
T Consensus         1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            468888 79999999999999999999999999999999999996   8999999999999999999999886

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.47  E-value=1.4e-13  Score=104.27  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=66.2

Q ss_pred             eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~  147 (458)
                      |+|+||+. |+.+++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            57899976 99999999999999999999999999999999999999999999999999999999998863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.45  E-value=2.6e-13  Score=103.07  Aligned_cols=69  Identities=23%  Similarity=0.427  Sum_probs=64.1

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE---cCeecCCCCCccccCCCCCCEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~---~G~~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      |.|+|+. .|+.|.++|++++||++||++|++..|+|+++|+|+|   .|+.|.|+.+|++|++++|+.|+++
T Consensus         1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            4577777 5788999999999999999999999999999999996   9999999999999999999999876

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.43  E-value=3.3e-13  Score=133.39  Aligned_cols=74  Identities=30%  Similarity=0.588  Sum_probs=71.4

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC---CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      |+|+||+.+|+.|.++|++++||.+||++|+...|   +++++|+|+|+||+|+|+++|++|+|+++++|+++++++
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~   77 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP   77 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence            78999999999999999999999999999999998   999999999999999999999999999999999998764

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.41  E-value=3.8e-13  Score=102.21  Aligned_cols=70  Identities=29%  Similarity=0.380  Sum_probs=62.6

Q ss_pred             CeEEEEc--CCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeecc-CCCCccccccc-cccccceeE
Q 012714            1 MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL   71 (458)
Q Consensus         1 ~~i~~~~--~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~-d~~tl~~y~i~-~~sti~l~~   71 (458)
                      +.++|+.  ..|.+++++|.+++||.+||++|+++.|+|+++|+| |+|+.|. |+++|++|++. +++++||.+
T Consensus         1 ~~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           1 LNVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             CEEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            3567775  578999999999999999999999999999999999 9999985 67999999998 779999864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.38  E-value=6.1e-13  Score=99.39  Aligned_cols=55  Identities=31%  Similarity=0.498  Sum_probs=49.4

Q ss_pred             ecC-CCcHHHHHHHHHhhc--CC-CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          397 VES-SDTIDNVKAKIQDKE--GI-PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       397 v~~-~~tV~~lK~~i~~~~--~~-~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      |+| ++||.+||++|+++.  |+ ++++|+|||+|+.|+|++||++|+|++|++||++.
T Consensus        16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            444 679999999999996  46 59999999999999999999999999999999865

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>smart00213 UBQ Ubiquitin homologues

Probab=99.37  E-value=1.5e-12  Score=96.38  Aligned_cols=64  Identities=61%  Similarity=0.864  Sum_probs=61.2

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES  445 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~  445 (458)
                      |+|+|++.+ +.+.++|++++||++||++|+..+|+|++.|+|+|+|+.|.|+.+|++|++++|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            689999998 7889999999999999999999999999999999999999999999999999885

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.37  E-value=2.2e-12  Score=98.01  Aligned_cols=65  Identities=29%  Similarity=0.364  Sum_probs=59.3

Q ss_pred             EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecC-CCCCccccCCC-CCCEEEEEE
Q 012714          386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL  451 (458)
Q Consensus       386 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~-d~~tL~~~~i~-~~~~i~~~~  451 (458)
                      +...|.++.++|+|++||++||++|++++|+|++.|+| |+|+.|. |+.+|++|+++ +|+++|+.+
T Consensus         8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            44568889999999999999999999999999999999 9999985 77999999998 889999864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=99.35  E-value=2.4e-12  Score=93.27  Aligned_cols=74  Identities=27%  Similarity=0.382  Sum_probs=68.9

Q ss_pred             eeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEec---C--eecCCCCCcccccccCCCeEEEEEeecC
Q 012714          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRLRG  379 (458)
Q Consensus       305 ~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~---g--~~L~~~~~l~~y~I~~~~~l~l~~~~~~  379 (458)
                      ++|.|+.+.+..+++.|+|+.+|+.+|++|...+|++- .|+|.|+   |  +.|++.++||+|||+++..|.|+.+.|+
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p~   79 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFPP   79 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCCC
Confidence            47899999999999999999999999999999999988 9999998   2  7888899999999999999999988775

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>smart00213 UBQ Ubiquitin homologues

Probab=99.35  E-value=1.7e-12  Score=96.03  Aligned_cols=64  Identities=61%  Similarity=0.864  Sum_probs=61.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccccccc
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES   65 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~s   65 (458)
                      |+|+|++.+ +++.++|++++||.+||++|++..|+|++.|+|+|+|+.|.|+.+|++|++.+++
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            899999999 7999999999999999999999999999999999999999999999999998875

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.34  E-value=1.1e-12  Score=98.12  Aligned_cols=54  Identities=31%  Similarity=0.533  Sum_probs=49.5

Q ss_pred             eCCCCHHHHHHHHhHHh--CCC-CCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714           94 ESSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus        94 ~~~~tV~~lK~~i~~~~--gip-~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~  147 (458)
                      +.++||.+||++|+++.  |+| +++|||+|+|++|+|+.||++|+|.+|++|||+.
T Consensus        18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            35889999999999995  575 9999999999999999999999999999999974

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.32  E-value=1.6e-12  Score=103.65  Aligned_cols=76  Identities=25%  Similarity=0.375  Sum_probs=65.5

Q ss_pred             CCeEEEEEecCCcEE-EEEEeCCCCHHHHHHHHhHH-----hCCC--CCCeEEEecCcccCCCcchhhcc------cccc
Q 012714           75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE  140 (458)
Q Consensus        75 ~~~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~~~------i~~~  140 (458)
                      +.+.|.++..+|..+ +..+++++||++||++|++.     +++|  +++|+|||+|++|+|+.||++|+      +...
T Consensus         3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~   82 (113)
T cd01814           3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV   82 (113)
T ss_pred             ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence            457788888899765 67789999999999999944     4566  99999999999999999999999      6667


Q ss_pred             cceeEEEEee
Q 012714          141 STLHLVLRLR  150 (458)
Q Consensus       141 s~i~l~~~~~  150 (458)
                      .++|++++++
T Consensus        83 ~TmHvvlr~~   92 (113)
T cd01814          83 ITMHVVVQPP   92 (113)
T ss_pred             eEEEEEecCC
Confidence            8999998864

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.32  E-value=2.7e-12  Score=126.68  Aligned_cols=74  Identities=36%  Similarity=0.565  Sum_probs=70.7

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      .++|+||+.++ ++.+.|..+.||.+||++|+..+++++++++|||.||+|+|++||..|||++|.+||++++..
T Consensus        15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence            47999999998 789999999999999999999999999999999999999999999999999999999998854

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.31  E-value=3.6e-12  Score=119.45  Aligned_cols=75  Identities=37%  Similarity=0.643  Sum_probs=72.4

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC--CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      |+|+||++.+++|++++.|++||.++|++|+...|  +|++.|+|||+|++|+|+.|+.+|+++++++|.+|+.++.
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k   77 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK   77 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence            78999999999999999999999999999999999  8999999999999999999999999999999999998763

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.30  E-value=3.6e-12  Score=126.04  Aligned_cols=73  Identities=30%  Similarity=0.601  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccC---CCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~g---ip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|+++.|++++|+|++++||.+||++|+...|   +|+++|+|+|+|+.|+|+++|++|+|.+++++++.+.-
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence            89999999999999999999999999999999998   99999999999999999999999999999999987743

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.29  E-value=2.4e-12  Score=102.65  Aligned_cols=73  Identities=29%  Similarity=0.414  Sum_probs=63.6

Q ss_pred             eEEEEcCCCcEE-EEEeecCccHHHHHHHhh-----cccCCC--CCceEEEEeeeeccCCCCccccc------ccccccc
Q 012714            2 QIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL   67 (458)
Q Consensus         2 ~i~~~~~~g~~~-~~~v~~~dtv~~~K~~i~-----~~~gip--~~~q~l~~~g~~L~d~~tl~~y~------i~~~sti   67 (458)
                      .|-|+..+|.-+ +..+.++|||.+||++|+     +++|+|  +++|+|+|+|+.|+|++||++|+      +...+|+
T Consensus         6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm   85 (113)
T cd01814           6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM   85 (113)
T ss_pred             EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence            456777788544 478889999999999999     666777  99999999999999999999999      8889999


Q ss_pred             ceeEeec
Q 012714           68 HLVLRLR   74 (458)
Q Consensus        68 ~l~~~~~   74 (458)
                      |+++++.
T Consensus        86 Hvvlr~~   92 (113)
T cd01814          86 HVVVQPP   92 (113)
T ss_pred             EEEecCC
Confidence            9999765

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.21  E-value=4.7e-11  Score=89.62  Aligned_cols=67  Identities=67%  Similarity=0.992  Sum_probs=63.8

Q ss_pred             EEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       385 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      |+..+|+.+.++++++.||++||++|+...|+|++.|+|+|+|+.|+|+.+|++|++.+|+.|+++.
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            6777899999999999999999999999999999999999999999999999999999999998864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.21  E-value=5.8e-11  Score=90.10  Aligned_cols=71  Identities=34%  Similarity=0.633  Sum_probs=66.0

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      |+|+|++.+|+.+.+.|.+++++..|++.++++.|+++ +.++|+|+|+.|++++|++++++++||+|++++
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            68999999999999999999999999999999999999 999999999999999999999999999999864

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.14  E-value=8.4e-11  Score=90.81  Aligned_cols=62  Identities=27%  Similarity=0.328  Sum_probs=57.0

Q ss_pred             eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeec-cCCccccccccCCCCEEEEEEEe
Q 012714          164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL  225 (458)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L-~d~~tL~~y~i~~~s~i~l~~~~  225 (458)
                      ...++|++++||.+||.+|++++++|+++|+|+++|+.| +|.+||++||+.++|.|.|..+.
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence            467889999999999999999999999999999999999 46789999999999999988753

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.11  E-value=2.3e-10  Score=85.86  Aligned_cols=67  Identities=67%  Similarity=0.992  Sum_probs=63.4

Q ss_pred             EEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus        81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~  147 (458)
                      |+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|.+|++.+++.|++..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            6777899999999999999999999999999999999999999999999999999999999998764

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.11  E-value=8.9e-11  Score=116.05  Aligned_cols=74  Identities=36%  Similarity=0.560  Sum_probs=70.2

Q ss_pred             CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEe
Q 012714           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (458)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~  149 (458)
                      ..++|+||+.+. .+.+.|..+.||.+||+.|...+++|+++++|||+||+|+|+.||..|||.+|.||||+.+.
T Consensus        14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~   87 (493)
T KOG0010|consen   14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS   87 (493)
T ss_pred             ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence            358899999988 88999999999999999999999999999999999999999999999999999999999864

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.11  E-value=1.1e-10  Score=90.15  Aligned_cols=61  Identities=28%  Similarity=0.335  Sum_probs=57.6

Q ss_pred             eEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCC-CCCcccccccCCCeEEEEEe
Q 012714          316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR  376 (458)
Q Consensus       316 ~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~g~~L~~-~~~l~~y~I~~~~~l~l~~~  376 (458)
                      ..++.|++++||.+||..|++++++++..|+|.+.|+.|.| .+||.+|||.++++|+|..+
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            46788999999999999999999999999999999999998 88999999999999999865

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.09  E-value=1.4e-10  Score=108.90  Aligned_cols=74  Identities=38%  Similarity=0.657  Sum_probs=70.3

Q ss_pred             eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhC--CCCCCeEEEecCcccCCCcchhhcccccccceeEEEEee
Q 012714           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~  150 (458)
                      |+|+||++.|..|++++.|++||.++|.+|+...|  .|+++|+|||+|++|.|+.++.+|++.+++.|.++++-.
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            78999999999999999999999999999999998  999999999999999999999999999999998887543

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.06  E-value=5.6e-10  Score=84.53  Aligned_cols=73  Identities=84%  Similarity=1.127  Sum_probs=69.2

Q ss_pred             eEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (458)
Q Consensus         2 ~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~   74 (458)
                      ++++.+..|+++++++.++++|..+|.+|..+.|+|+++|++.+.|+.|.|+.++.+|+|..++++++..++.
T Consensus         1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~   73 (75)
T KOG0001|consen    1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR   73 (75)
T ss_pred             CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence            4688999999999999999999999999999999999999999999999999999999999999999987654

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.04  E-value=9.9e-10  Score=83.27  Aligned_cols=71  Identities=34%  Similarity=0.633  Sum_probs=65.7

Q ss_pred             eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCC-CCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~  147 (458)
                      |+|+|+..+|+.+.+.|.+++++..|++.++++.|+|+ +..+|+|.|+.|+++.|+++|++.+|++|++.+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            68999999999999999999999999999999999999 999999999999999999999999999998863

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.86  E-value=1.5e-08  Score=79.04  Aligned_cols=70  Identities=21%  Similarity=0.402  Sum_probs=57.7

Q ss_pred             eEEEEcCC-CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEE-EEcCe-----ec-CCCCCccccCCCCCCEEEEEE
Q 012714          382 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK-----QL-EDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       382 ~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~L-i~~G~-----~L-~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      .|.|.... ....+.++++++||.+||++++..+|++++.|+| +|.|+     .| +|.++|++|++++|+.||+.-
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            44554433 3445666999999999999999999999999999 58888     45 688899999999999999853

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.83  E-value=3.1e-08  Score=74.79  Aligned_cols=73  Identities=84%  Similarity=1.145  Sum_probs=68.7

Q ss_pred             EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      +++++..|+.+.+++.+..+|..+|.+|+...|+++++|++.+.|+.|.|+.++.+|+|..++.+++..+.++
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~   74 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG   74 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence            5677889999999999999999999999999999999999999999999999999999999999999887654

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.79  E-value=2.4e-08  Score=77.81  Aligned_cols=70  Identities=21%  Similarity=0.379  Sum_probs=57.9

Q ss_pred             EEEEEecC-CcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE-ecCc-----cc-CCCcchhhcccccccceeEEE
Q 012714           78 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus        78 ~i~vk~~~-g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~-----~L-~d~~tL~~~~i~~~s~i~l~~  147 (458)
                      .|.|+... .......++++.||.+||++++..+|+|++.|+|. |.|+     .| +|+.+|++|++.+|.+||++-
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            45565433 33455569999999999999999999999999995 8887     45 688999999999999999874

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.78  E-value=2.5e-08  Score=79.26  Aligned_cols=75  Identities=28%  Similarity=0.444  Sum_probs=65.1

Q ss_pred             EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCC-------CCCCEEEEEEEecC
Q 012714          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRG  455 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i-------~~~~~i~~~~~~~~  455 (458)
                      +.||.. ..++-+++.++.||.+||++|+.-...||++|+|+-.+.+|+|++||+|||+       +..+++-+..|+..
T Consensus         5 lmIrR~-KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d   83 (119)
T cd01788           5 LMIRRH-KTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSD   83 (119)
T ss_pred             EEEEec-ceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCC
Confidence            444443 3445688999999999999999999999999999988889999999999999       77999999999887


Q ss_pred             CCC
Q 012714          456 GEF  458 (458)
Q Consensus       456 g~~  458 (458)
                      |.|
T Consensus        84 ~~f   86 (119)
T cd01788          84 DTF   86 (119)
T ss_pred             CCc
Confidence            876

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.73  E-value=9.9e-08  Score=77.94  Aligned_cols=75  Identities=29%  Similarity=0.492  Sum_probs=58.4

Q ss_pred             ceeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcC-------CCCCceEEEEcCeecCCCCCccccCCCCCC------
Q 012714          380 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------  445 (458)
Q Consensus       380 ~~~i~vk~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~-------~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~------  445 (458)
                      .+.+.++..+|+ .-.+..++++||.+||+.|-.+..       ..++..||||.||.|+|+.||+++.+..|+      
T Consensus         2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~   81 (111)
T PF13881_consen    2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT   81 (111)
T ss_dssp             SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred             eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence            466778888999 778999999999999999998753       245899999999999999999999987766      


Q ss_pred             EEEEEEEec
Q 012714          446 TLHLVLRLR  454 (458)
Q Consensus       446 ~i~~~~~~~  454 (458)
                      ++|++++..
T Consensus        82 vmHlvvrp~   90 (111)
T PF13881_consen   82 VMHLVVRPN   90 (111)
T ss_dssp             EEEEEE-SS
T ss_pred             EEEEEecCC
Confidence            688888743

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.68  E-value=6.3e-08  Score=77.02  Aligned_cols=73  Identities=30%  Similarity=0.438  Sum_probs=61.5

Q ss_pred             eeEEEeccCc-eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCcccccccc-------CCCCEEEEEEEe
Q 012714          154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRL  225 (458)
Q Consensus       154 ~i~v~~~~g~-~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i-------~~~s~i~l~~~~  225 (458)
                      .+|+.....+ ++.+++.+++||.+||++|+.....|+++|+|+..+..|+|++||++||+       +.-.++-|.++.
T Consensus         2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~   81 (119)
T cd01788           2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS   81 (119)
T ss_pred             ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence            3444444433 57789999999999999999999999999999988889999999999999       667888888774


Q ss_pred             c
Q 012714          226 R  226 (458)
Q Consensus       226 ~  226 (458)
                      .
T Consensus        82 ~   82 (119)
T cd01788          82 S   82 (119)
T ss_pred             C
Confidence            3

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.64  E-value=1.5e-07  Score=74.08  Aligned_cols=69  Identities=28%  Similarity=0.565  Sum_probs=56.3

Q ss_pred             eEEEEcCCC--cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc----Ce---ec-CCCCCccccCCCCCCEEEEE
Q 012714          382 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK---QL-EDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       382 ~i~vk~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~----G~---~L-~d~~tL~~~~i~~~~~i~~~  450 (458)
                      +|+|.....  ...+..++++.||.+||.+++..+|+|++.|+|.+.    |.   .+ +|.++|.+|++++|+.||+.
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            566655544  578899999999999999999999999999999986    22   23 57889999999999999875

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.62  E-value=1.6e-07  Score=76.73  Aligned_cols=75  Identities=29%  Similarity=0.492  Sum_probs=56.7

Q ss_pred             CeEEEEEecCCc-EEEEEEeCCCCHHHHHHHHhHHhC-------CCCCCeEEEecCcccCCCcchhhccccccc------
Q 012714           76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------  141 (458)
Q Consensus        76 ~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~G~~L~d~~tL~~~~i~~~s------  141 (458)
                      .+.|.++..+|. .-++.+++++||.+||+.|...+.       ..++..||||.||.|+|+.+|++|.+..++      
T Consensus         2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~   81 (111)
T PF13881_consen    2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT   81 (111)
T ss_dssp             SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred             eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence            466778888999 788999999999999999997642       134668999999999999999999988766      


Q ss_pred             ceeEEEEee
Q 012714          142 TLHLVLRLR  150 (458)
Q Consensus       142 ~i~l~~~~~  150 (458)
                      ++||++++.
T Consensus        82 vmHlvvrp~   90 (111)
T PF13881_consen   82 VMHLVVRPN   90 (111)
T ss_dssp             EEEEEE-SS
T ss_pred             EEEEEecCC
Confidence            677777653

>PLN02560 enoyl-CoA reductase

Probab=98.60  E-value=1.2e-07  Score=91.94  Aligned_cols=69  Identities=32%  Similarity=0.560  Sum_probs=61.8

Q ss_pred             eeEEEEcCCCcEE---EEEecCCCcHHHHHHHHHhhcCC-CCCceEEEEc---C----eecCCCCCccccCCCCCCEEEE
Q 012714          381 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       381 ~~i~vk~~~g~~~---~~~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~~---G----~~L~d~~tL~~~~i~~~~~i~~  449 (458)
                      |+|+|+..+|+.+   +++++++.||++||++|+++.+. ++++|||.+.   |    ..|+|+++|+++|+++|++|++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            6789998888886   79999999999999999999986 8999999983   4    4889999999999999999864

>PLN02560 enoyl-CoA reductase

Probab=98.58  E-value=8.9e-08  Score=92.73  Aligned_cols=69  Identities=32%  Similarity=0.560  Sum_probs=62.6

Q ss_pred             CeEEEEcCCCcEE---EEEeecCccHHHHHHHhhcccCC-CCCceEEEEe---e----eeccCCCCccccccccccccce
Q 012714            1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL   69 (458)
Q Consensus         1 ~~i~~~~~~g~~~---~~~v~~~dtv~~~K~~i~~~~gi-p~~~q~l~~~---g----~~L~d~~tl~~y~i~~~sti~l   69 (458)
                      |+|.|++.+|+++   +++++++.||++||.+|+++.++ ++++|+|.+.   |    ..|+|+++|.+|++.+++++++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            8999999999998   79999999999999999999986 8999999983   4    3789999999999999998665

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=8.3e-08  Score=102.24  Aligned_cols=73  Identities=34%  Similarity=0.592  Sum_probs=69.3

Q ss_pred             eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       382 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      .++||+++.++.+|.+...+||.+||..|.++.+++.+.|||||+|++|.|++++.+|+| +|-+|||+-|-.+
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp   76 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP   76 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence            589999999999999999999999999999999999999999999999999999999999 9999999877443

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.57  E-value=3e-07  Score=67.07  Aligned_cols=71  Identities=28%  Similarity=0.401  Sum_probs=63.3

Q ss_pred             eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEec---C--cccCCCcchhhcccccccceeEEEE
Q 012714           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR  148 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---G--~~L~d~~tL~~~~i~~~s~i~l~~~  148 (458)
                      ++|+||...+.++++.|+|..+|.++|++|....|++- .|||.|.   |  +.|.+..+|++|||-.+..|.|+..
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT   76 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET   76 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence            47899999999999999999999999999999999987 9999986   2  4578999999999998888877654

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=6.2e-08  Score=103.17  Aligned_cols=72  Identities=35%  Similarity=0.607  Sum_probs=69.3

Q ss_pred             EEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEee
Q 012714           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (458)
Q Consensus        78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~  150 (458)
                      .|+|||++.++.++.+...+||.++|+.|+++.+|+.+.||+||.|++|.|++++.+|++ +|-+|||+.+++
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp   75 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP   75 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence            489999999999999999999999999999999999999999999999999999999999 999999998864

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.56  E-value=3.3e-07  Score=72.06  Aligned_cols=71  Identities=27%  Similarity=0.543  Sum_probs=56.6

Q ss_pred             eEEEEEecCC--cEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEec----C---ccc-CCCcchhhcccccccceeEE
Q 012714           77 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLV  146 (458)
Q Consensus        77 ~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----G---~~L-~d~~tL~~~~i~~~s~i~l~  146 (458)
                      +.|+|.....  ......++++.||.+||.+++..+|+|++.|+|.+.    +   ..+ +|..+|.+|++.+|.+||+.
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            3466655544  478889999999999999999999999999999876    1   123 57899999999999999876


Q ss_pred             E
Q 012714          147 L  147 (458)
Q Consensus       147 ~  147 (458)
                      -
T Consensus        82 D   82 (87)
T PF14560_consen   82 D   82 (87)
T ss_dssp             E
T ss_pred             e
Confidence            4

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.44  E-value=5.8e-07  Score=68.92  Aligned_cols=52  Identities=29%  Similarity=0.379  Sum_probs=47.2

Q ss_pred             cCCCcHHHHHHHHHhhcC-CCCCceEEE--EcCeecCCCCCccccCCCCCCEEEE
Q 012714          398 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       398 ~~~~tV~~lK~~i~~~~~-~~~~~q~Li--~~G~~L~d~~tL~~~~i~~~~~i~~  449 (458)
                      +++.||.+||+.|++..+ +++++|+|.  +.|+.|.|+.+|++||+++|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            588999999999999976 589999985  7899999999999999999999875

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.39  E-value=5.7e-07  Score=69.07  Aligned_cols=71  Identities=28%  Similarity=0.437  Sum_probs=45.0

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc---Ceec--CCCCCccccCCCCCCEEEE
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~---G~~L--~d~~tL~~~~i~~~~~i~~  449 (458)
                      .+.|-|.|++.+|.. .++++|++|+.+|+++|++..+++.+.|.|..+   ...|  .+.+||+++|++.||.|++
T Consensus         2 ~~~milRvrS~dG~~-Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL   77 (80)
T PF11543_consen    2 ASSMILRVRSKDGMK-RIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL   77 (80)
T ss_dssp             ----EEEEE-SSEEE-EEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred             CccEEEEEECCCCCE-EEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence            357889999999875 689999999999999999999999998887543   2345  4688999999999999976

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.24  E-value=2.7e-06  Score=65.20  Aligned_cols=52  Identities=29%  Similarity=0.379  Sum_probs=46.5

Q ss_pred             eCCCCHHHHHHHHhHHhC-CCCCCeEEE--ecCcccCCCcchhhcccccccceeE
Q 012714           94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL  145 (458)
Q Consensus        94 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~G~~L~d~~tL~~~~i~~~s~i~l  145 (458)
                      +++.||.+||..|++..+ +++++|+|.  +.|+.|.|+.+|++||+.+|+++++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            578999999999999875 689999995  8899999999999999999998765

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.23  E-value=2e-06  Score=66.09  Aligned_cols=71  Identities=28%  Similarity=0.426  Sum_probs=43.2

Q ss_pred             cceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEec---Ceec--cCCccccccccCCCCEEEEE
Q 012714          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV  222 (458)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~---g~~L--~d~~tL~~y~i~~~s~i~l~  222 (458)
                      ..|-|.|+..+| ...+++++++|+.+|+++|++..++|.+.|.|..+   ...+  .++.+|+++|++.|+.|+|.
T Consensus         3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            456677777765 57789999999999999999999999999988732   2344  57899999999999999764

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.5e-05  Score=62.28  Aligned_cols=80  Identities=16%  Similarity=0.399  Sum_probs=73.1

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      +..+++.|+.-++....|.|..+.+...|++.-+++.|++....|++|+|+.+.+.+|.++++.++||.|.++.-+-||.
T Consensus        18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~   97 (99)
T KOG1769|consen   18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF   97 (99)
T ss_pred             cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence            34567788887788889999999999999999999999999999999999999999999999999999999988877773

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.20  E-value=7.7e-06  Score=59.02  Aligned_cols=66  Identities=45%  Similarity=0.659  Sum_probs=60.3

Q ss_pred             EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       386 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      +..+++...+.+.++.|++++|+.++++.|.+++.+.|.++|..+.+...+.++++.+++.|++..
T Consensus         3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            334788889999999999999999999999999999999999999999999999999999998753

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd00196 UBQ Ubiquitin-like proteins

Probab=97.97  E-value=2.9e-05  Score=55.87  Aligned_cols=66  Identities=45%  Similarity=0.659  Sum_probs=59.7

Q ss_pred             EecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEE
Q 012714           82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus        82 k~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~  147 (458)
                      +..+|....+.+.+..|+.++|+++.++.|.+++.+.|+++|..+.+...+.+|++.+++.+++..
T Consensus         3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            334788889999999999999999999999999999999999999998888899999999998763

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=4.3e-06  Score=59.07  Aligned_cols=69  Identities=26%  Similarity=0.398  Sum_probs=62.2

Q ss_pred             eeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEE
Q 012714          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (458)
Q Consensus       154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~  222 (458)
                      ++.+...-|+...+.+.+++||+++|..|+.++|-.++...|--.+...+|.-+|++|.|.+|-.+.+.
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence            445566678999999999999999999999999999999999988889999999999999999888765

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=4.5e-06  Score=58.97  Aligned_cols=70  Identities=26%  Similarity=0.405  Sum_probs=62.0

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      +++.+.+.-|+...+.+.+++||+++|+.|+++.|-.++..+|---+..++|.-+|++|.|.+|-.+.+.
T Consensus         2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence            4567778889999999999999999999999999999998888766778999999999999999877553

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=9.3e-05  Score=57.85  Aligned_cols=77  Identities=17%  Similarity=0.449  Sum_probs=70.7

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCCe
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  229 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~  229 (458)
                      +.+.|+..++....+.|..+++...|+..-+++.|++.+..|+.|+|+.+.+..|-++.++.+|+.|.++....+|.
T Consensus        21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~   97 (99)
T KOG1769|consen   21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF   97 (99)
T ss_pred             EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence            45667777788889999999999999999999999999999999999999999999999999999999998877764

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=3.6e-05  Score=72.02  Aligned_cols=70  Identities=30%  Similarity=0.598  Sum_probs=61.4

Q ss_pred             eEEEEcC---CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          382 QIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       382 ~i~vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      .+.|++.   ....+.++|+.+.+|.+||+.++.+.|+|+++.++||.||+|.|+.|+..+.+..-+.+|++.
T Consensus         2 ~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~   74 (446)
T KOG0006|consen    2 IVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML   74 (446)
T ss_pred             eEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence            3445444   345688999999999999999999999999999999999999999999999998889998873

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00011  Score=68.90  Aligned_cols=64  Identities=33%  Similarity=0.643  Sum_probs=58.3

Q ss_pred             CcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEE-EEe
Q 012714           86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL  149 (458)
Q Consensus        86 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~-~~~  149 (458)
                      ...++++|+.+..|.+||+-++...|+|+++.+++|+||+|.|+.++..+.+..-+.+|++ ++|
T Consensus        13 ~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen   13 SHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             cCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence            3568899999999999999999999999999999999999999999999999888988877 343

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=8.9e-05  Score=73.68  Aligned_cols=71  Identities=24%  Similarity=0.417  Sum_probs=65.7

Q ss_pred             eEEEEEecCCcEEEEE-EeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEE
Q 012714           77 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~  148 (458)
                      ..|.|| +.|+.++++ ++.++|+..+|+++...+|+||++|++.+.|+.+.|+-.+....|++|.+++++-.
T Consensus         4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt   75 (473)
T KOG1872|consen    4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGT   75 (473)
T ss_pred             ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecc
Confidence            357777 889999998 99999999999999999999999999999999999998888999999999999864

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=8.7e-05  Score=56.32  Aligned_cols=79  Identities=16%  Similarity=0.360  Sum_probs=70.7

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      ..+.+.|-..+|..+-+.+..+.+...|.+..+.+.|-..+..|++|+|+.++-++|..|++.++++.|.++..+-||+
T Consensus        23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~  101 (103)
T COG5227          23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA  101 (103)
T ss_pred             cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence            3456677777889999999999999999999999999999999999999999999999999999999997766666664

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.47  E-value=0.00029  Score=51.52  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=47.5

Q ss_pred             ccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEE
Q 012714          235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  297 (458)
Q Consensus       235 ~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l  297 (458)
                      ..++++..+.+.++.++.++-+..|.++|++++.+.|.|+++.++-+.+++..|+.+|+.+.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            567899999999999999999999999999999999999999999999999999999998865

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.44  E-value=0.00015  Score=55.75  Aligned_cols=61  Identities=30%  Similarity=0.446  Sum_probs=52.4

Q ss_pred             CeEEEEcCCC-cEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEee--eeccCCCCcccccc
Q 012714            1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADYNI   61 (458)
Q Consensus         1 ~~i~~~~~~g-~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g--~~L~d~~tl~~y~i   61 (458)
                      |++|++...- .++.+..+++.||.++|+++..-..=|++.|+|+-..  ..|+|++||.|++.
T Consensus         1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf   64 (110)
T KOG4495|consen    1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF   64 (110)
T ss_pred             CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence            6788888554 4777999999999999999988888899999999843  45799999999964

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.42  E-value=0.00019  Score=55.16  Aligned_cols=53  Identities=30%  Similarity=0.409  Sum_probs=46.8

Q ss_pred             ceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEe-cC-eeccCCccccccccCC
Q 012714          163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQK  215 (458)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~-~g-~~L~d~~tL~~y~i~~  215 (458)
                      .++.+..+++.||.+||.++.....-|+++|+|.. .. +.|+|.+||+++|...
T Consensus        12 ttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts   66 (110)
T KOG4495|consen   12 TTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS   66 (110)
T ss_pred             eeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence            45778999999999999999999999999999996 33 6789999999998765

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0012  Score=65.78  Aligned_cols=72  Identities=24%  Similarity=0.408  Sum_probs=63.7

Q ss_pred             eEEEEcCCCcEEEEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714          382 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       382 ~i~vk~~~g~~~~~~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      .|.||. .|+.|.++ ++.++|+..||+++.+.+|++|++|++.+.|..+.|+--+...+|++|.+++++-...
T Consensus         5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e   77 (473)
T KOG1872|consen    5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE   77 (473)
T ss_pred             eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence            455555 47788888 9999999999999999999999999999999999999899999999999998875543

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.05  E-value=0.0022  Score=46.98  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             eccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEE
Q 012714          159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  221 (458)
Q Consensus       159 ~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l  221 (458)
                      ..+++...+.+.|++++.++-+....++|++++...|.|+++.++-+.++.-.|+.+|+.+.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            356788999999999999999999999999999999999999999999999999999998875

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.00  E-value=0.002  Score=49.52  Aligned_cols=69  Identities=22%  Similarity=0.368  Sum_probs=50.3

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC---C---ceEEE-EcCeecCCCCCccccCCCCCCEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---D---QQRLI-FAGKQLEDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~---~---~q~Li-~~G~~L~d~~tL~~~~i~~~~~i~~  449 (458)
                      ++|+|...+|+.+.+.+..+-+|.+|...+.+..+.+.   .   .-.|. -+|..|++++||++++|.+|+.+++
T Consensus         3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            46788887778999999999999999999999888533   2   23444 4699999999999999999999976

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.97  E-value=0.006  Score=47.12  Aligned_cols=72  Identities=22%  Similarity=0.333  Sum_probs=60.5

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCc-eEEE--EcCeecCCC--CCccccCCCCCCEEEE
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHL  449 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~-q~Li--~~G~~L~d~--~tL~~~~i~~~~~i~~  449 (458)
                      ++...|.||.++|+.+.-...+++||.+|..-|......+... ..|+  |-.+.+.+.  +||++.++.++++|++
T Consensus         4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            3557899999999999999999999999999999988776664 6675  456788754  5999999999999865

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.96  E-value=0.0019  Score=51.43  Aligned_cols=57  Identities=21%  Similarity=0.368  Sum_probs=44.1

Q ss_pred             EEEEcCCC-cEEEEEec--CCCcHHHHHHHHHhhcC--CCCCceEEEEcCeecCCCCCcccc
Q 012714          383 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY  439 (458)
Q Consensus       383 i~vk~~~g-~~~~~~v~--~~~tV~~lK~~i~~~~~--~~~~~q~Li~~G~~L~d~~tL~~~  439 (458)
                      |+|++.++ ....+++.  .+.||..||++|.+..+  ..-..+||||+|+.|.|...|+..
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~   64 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE   64 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence            44555442 33567766  88999999999999984  456789999999999999877654

They contain a characteristic GFDRL sequence motif.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=96.89  E-value=0.004  Score=53.89  Aligned_cols=62  Identities=23%  Similarity=0.415  Sum_probs=49.5

Q ss_pred             CeEEEEcCCC----cEEEEEeecCccHHHHHHHhhcccCCCCCce-EEEEe-eeecc--CCCCccccccc
Q 012714            1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQLE--DGRTLADYNIQ   62 (458)
Q Consensus         1 ~~i~~~~~~g----~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q-~l~~~-g~~L~--d~~tl~~y~i~   62 (458)
                      |+|||.+++|    .++.+.+.++.||.+|+..|....++|...| .|++. ++.|.  ++..+..+.-.
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~   70 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSS   70 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccC
Confidence            7999999999    6999999999999999999999999998884 56664 55663  34445555443

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.84  E-value=0.003  Score=50.32  Aligned_cols=58  Identities=21%  Similarity=0.316  Sum_probs=44.9

Q ss_pred             EEEEecC-CcEEEEEEe--CCCCHHHHHHHHhHHhC--CCCCCeEEEecCcccCCCcchhhcc
Q 012714           79 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN  136 (458)
Q Consensus        79 i~vk~~~-g~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~~~  136 (458)
                      |+|+..+ -.+++++++  ...||..||..|.+..+  ..-.++||||+|+.|.|+..|+..-
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l   65 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL   65 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence            4455444 345777777  78999999999999873  4456789999999999988887653

They contain a characteristic GFDRL sequence motif.

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=96.81  E-value=0.0033  Score=48.28  Aligned_cols=68  Identities=22%  Similarity=0.396  Sum_probs=48.5

Q ss_pred             eeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCC------eEEE-ecCeeccCCccccccccCCCCEEEE
Q 012714          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL  221 (458)
Q Consensus       154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~------q~L~-~~g~~L~d~~tL~~y~i~~~s~i~l  221 (458)
                      +|+|...+|+.+.+.++.+.+|++|...+.+..+.+...      ..|. -+|..|+++.||+++||.+|+.+.+
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            456665456889999999999999999999988864322      3455 6789999999999999999999876

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=96.66  E-value=0.013  Score=50.83  Aligned_cols=76  Identities=30%  Similarity=0.533  Sum_probs=59.2

Q ss_pred             eeEEEEcCCC----cEEEEEecCCCcHHHHHHHHHhhcCCCCCce-EEEE-cCeec--CCCCCccccCCCCCC----EEE
Q 012714          381 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKES----TLH  448 (458)
Q Consensus       381 ~~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q-~Li~-~G~~L--~d~~tL~~~~i~~~~----~i~  448 (458)
                      |+|+|.+.+|    .++.+.++++.||.+|+..|.+..+.+...| .|.+ .|+.|  .++..++++.-.+.+    .++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            5789999999    6889999999999999999999999988874 4555 35555  456667776544443    677


Q ss_pred             EEEEecCC
Q 012714          449 LVLRLRGG  456 (458)
Q Consensus       449 ~~~~~~~g  456 (458)
                      +..+..||
T Consensus        81 l~~rl~GG   88 (162)
T PF13019_consen   81 LSLRLRGG   88 (162)
T ss_pred             EEEeccCC
Confidence            88888887

>COG5417 Uncharacterized small protein [Function unknown]

Probab=96.51  E-value=0.018  Score=42.39  Aligned_cols=69  Identities=19%  Similarity=0.276  Sum_probs=56.9

Q ss_pred             eeEEE--EcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-----CCCceEEEEcCeecCCCCCccccCCCCCCEEEE
Q 012714          381 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGI-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       381 ~~i~v--k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~-----~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~  449 (458)
                      |+|+|  +..+|.+|.+.++.-.++..|-..+.+...+     +-+..+..-.++.|.+++.|.+|+|.+||.+.+
T Consensus         5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417           5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            45555  5567999999999999999998887776653     235677888899999999999999999999854

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.48  E-value=0.018  Score=44.40  Aligned_cols=71  Identities=23%  Similarity=0.329  Sum_probs=59.4

Q ss_pred             ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCC-eEEE--ecCeeccCC--ccccccccCCCCEEEEE
Q 012714          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV  222 (458)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~-q~L~--~~g~~L~d~--~tL~~y~i~~~s~i~l~  222 (458)
                      ...|.|+.++|+.+.-...+++||.+|.+.|......+... ..|.  |..+.+.++  .||++.|+.+.++|.+.
T Consensus         6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            45678888999999999999999999999999888777665 7776  677777543  69999999999988763

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=96.27  E-value=0.033  Score=42.65  Aligned_cols=69  Identities=22%  Similarity=0.293  Sum_probs=55.2

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-CCCceEEE--EcCeecCC-CCCccccCCCCCCEE
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKESTL  447 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li--~~G~~L~d-~~tL~~~~i~~~~~i  447 (458)
                      +..+|.||.++|+.+.-....++||++|.+-+..+.+- ......|.  |-.+.|.| +.||.|.|+.+..++
T Consensus         3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            34689999999999999999999999999999987643 33556665  55787764 789999999865444

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=96.22  E-value=0.026  Score=43.38  Aligned_cols=70  Identities=21%  Similarity=0.243  Sum_probs=57.9

Q ss_pred             ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeeccC---CccccccccCCCCEEEE
Q 012714          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  221 (458)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~i~~~s~i~l  221 (458)
                      ...|.|+.++|+.+.-....++|+++|.+.+....+.+.....|.  |..+.+.+   +.||.+.|+.+.+++.+
T Consensus         4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            356788899999999999999999999999977677766777877  66777753   57999999998888765

Present in FAF1 and Shp1p.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=96.09  E-value=0.041  Score=42.27  Aligned_cols=71  Identities=21%  Similarity=0.240  Sum_probs=56.9

Q ss_pred             CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCcccCC---CcchhhcccccccceeE
Q 012714           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  145 (458)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tL~~~~i~~~s~i~l  145 (458)
                      +...|.||.++|+.+.-...+++|+.++.+-+....+.+...-.|+  |-.+.+.+   +.||.+.++.+++++.+
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            3457889999999999999999999999999976666655566666  55677753   47999999988887754

Present in FAF1 and Shp1p.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=0.012  Score=52.43  Aligned_cols=62  Identities=29%  Similarity=0.446  Sum_probs=56.6

Q ss_pred             cCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeE
Q 012714           84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  145 (458)
Q Consensus        84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l  145 (458)
                      .+++.+.+.+...+||.++|.++++..|+.+..|+++|+|+.|-|...|..|+|..|+...+
T Consensus       154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl  215 (231)
T KOG0013|consen  154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL  215 (231)
T ss_pred             hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence            36788999999999999999999999999999999999999999999999999999965443

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.0083  Score=45.78  Aligned_cols=75  Identities=16%  Similarity=0.361  Sum_probs=65.3

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecC
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~  227 (458)
                      +.+.|...+|.++.+.+..+++...|....+.+.|=..+..|+.|+|+.++-++|.+++++.+++.|..+....|
T Consensus        25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvG   99 (103)
T COG5227          25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVG   99 (103)
T ss_pred             cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhc
Confidence            455666677888999999999999999999999999999999999999999999999999999988765544333

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=95.73  E-value=0.097  Score=39.81  Aligned_cols=67  Identities=16%  Similarity=0.266  Sum_probs=52.6

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecCC---CCCccccCCCCCCEE
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLADYNIQKESTL  447 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~d---~~tL~~~~i~~~~~i  447 (458)
                      ..+|.||.++|+.++-...+++||.+|.+-|.....- .....|+.  -.+.+.+   +.||.+.|+.++.++
T Consensus         2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~   73 (77)
T cd01767           2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF   73 (77)
T ss_pred             cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence            3578999999999999999999999999999876543 45566654  4677754   789999999954444

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=95.73  E-value=0.1  Score=40.49  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=58.0

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC--eecC--------CCCCccccCCCCCCEE
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTL  447 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G--~~L~--------d~~tL~~~~i~~~~~i  447 (458)
                      ++..+|.||.++|+...-....++||++|..-+.. .+..++...|+.+=  +.+.        .+.||.+.|+.+..++
T Consensus         2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L   80 (85)
T cd01774           2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL   80 (85)
T ss_pred             CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence            45678999999999998899999999999999964 45566788888764  7775        3679999999988777


Q ss_pred             EE
Q 012714          448 HL  449 (458)
Q Consensus       448 ~~  449 (458)
                      .+
T Consensus        81 ~V   82 (85)
T cd01774          81 FV   82 (85)
T ss_pred             EE
Confidence            43

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=95.66  E-value=0.062  Score=41.16  Aligned_cols=68  Identities=16%  Similarity=0.317  Sum_probs=55.3

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeeccC---CccccccccCCCCEEEE
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  221 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~i~~~s~i~l  221 (458)
                      ..|.|+.++|+.+.-..+.++|+++|.+.|....+-+ ....|+  |-.+.+.+   +.||.+.|+.+..+|.|
T Consensus         5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            4677888999999999999999999999998765543 556666  77788853   58999999999888765

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=95.61  E-value=0.074  Score=40.47  Aligned_cols=67  Identities=15%  Similarity=0.258  Sum_probs=52.5

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeecc---CCccccccccCCCCEEEE
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL  221 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~y~i~~~s~i~l  221 (458)
                      ..|.|+.++|+.+.-....++|+++|.+.|.....- ...+.|.  |-.+.+.   .+.||.+.|+.+ +.+.+
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~   74 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ   74 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence            457788899999999999999999999999876543 4556666  6677774   488999999994 54433

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.44  E-value=0.023  Score=50.77  Aligned_cols=63  Identities=29%  Similarity=0.488  Sum_probs=56.9

Q ss_pred             CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCC--CEEEEEE
Q 012714          389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLVL  451 (458)
Q Consensus       389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~--~~i~~~~  451 (458)
                      +++.|.+.+..-+|+.++|..+.+..|+++-.|+++|+|..|-|...|..|+++.|  -++.+.+
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviV  219 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIV  219 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEe
Confidence            57778999999999999999999999999999999999999999999999999999  4554444

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=95.38  E-value=0.1  Score=39.90  Aligned_cols=67  Identities=21%  Similarity=0.270  Sum_probs=52.4

Q ss_pred             CeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCC-CCCeEEE--ecCcccC-CCcchhhcccccccc
Q 012714           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLE-DGRTLADYNIQKEST  142 (458)
Q Consensus        76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip-~~~q~L~--~~G~~L~-d~~tL~~~~i~~~s~  142 (458)
                      .-+|.|+..+|+.+...++.++||.+|.+-+....+-+ ...-.|.  |-.+.|. ++.||.+.|+.+.+.
T Consensus         4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v   74 (79)
T cd01770           4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI   74 (79)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence            35688999999999999999999999999999875432 2345565  6678775 478999999986443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=95.22  E-value=0.11  Score=39.69  Aligned_cols=68  Identities=16%  Similarity=0.317  Sum_probs=54.4

Q ss_pred             eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCcccCC---CcchhhcccccccceeE
Q 012714           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  145 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tL~~~~i~~~s~i~l  145 (458)
                      ..|.||.++|+.+.-..+.++|+.++.+.+....+-+ ..-.|+  |-.+.+.+   +.||.+.|+.+.+++.+
T Consensus         5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            4688999999999999999999999999998765433 345565  56777753   58999999998887765

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=95.20  E-value=0.0089  Score=56.99  Aligned_cols=75  Identities=24%  Similarity=0.326  Sum_probs=55.6

Q ss_pred             cCceeEEEEcCCCcE--EEEEecCCCcHHHHHHHHHhhcCC--CCCceEEEEcCeecCCCCCccccCCC--CCCEEEEEE
Q 012714          378 RGGMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVL  451 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~--~~~~v~~~~tV~~lK~~i~~~~~~--~~~~q~Li~~G~~L~d~~tL~~~~i~--~~~~i~~~~  451 (458)
                      +-+..+.||..+.+.  ..|..+..+||++||..++.-+.-  -+.+|||+|+||.|.|.++|.|.=.+  ...+.|+++
T Consensus         7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc   86 (391)
T KOG4583|consen    7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC   86 (391)
T ss_pred             CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence            345667778877653  466677899999999999988753  34799999999999999999987432  234445444


Q ss_pred             E
Q 012714          452 R  452 (458)
Q Consensus       452 ~  452 (458)
                      .
T Consensus        87 n   87 (391)
T KOG4583|consen   87 N   87 (391)
T ss_pred             C
Confidence            3

>COG5417 Uncharacterized small protein [Function unknown]

Probab=94.96  E-value=0.16  Score=37.56  Aligned_cols=67  Identities=18%  Similarity=0.245  Sum_probs=54.7

Q ss_pred             EEEEccCCceEEEeecccchHHHHHHHHhhhcCCC--C---CceEEEecCcccCCCCcccccccCCCCeEEE
Q 012714          231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--P---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL  297 (458)
Q Consensus       231 I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip--~---~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l  297 (458)
                      +...+.+|.++.+.+....++..|-..+.+.+.+.  +   .+.+.+-+++.+.++..|.+|+|.+|+.+.+
T Consensus         9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417           9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            44567889999999999999999998888766432  2   3356777899999999999999999998764

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=94.94  E-value=0.14  Score=48.53  Aligned_cols=108  Identities=17%  Similarity=0.342  Sum_probs=76.9

Q ss_pred             EEeecCCCcHHHHHHhhhcccCCCCCCeeEEec----C--eecCCCCCcccccccCCCeEEEEEeecC------------
Q 012714          318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G--KQLEDGRTLADYNIQKESTLHLVLRLRG------------  379 (458)
Q Consensus       318 ~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~----g--~~L~~~~~l~~y~I~~~~~l~l~~~~~~------------  379 (458)
                      .+.|...++|.++-..|.+..|+|++..-+.|.    +  ..++.+.+++...+.+|++|.+....+.            
T Consensus        88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~  167 (249)
T PF12436_consen   88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK  167 (249)
T ss_dssp             EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred             EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence            377899999999999999999999987777776    3  5677799999999999999999985542            


Q ss_pred             --------ceeEEEEcC---CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE
Q 012714          380 --------GMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  425 (458)
Q Consensus       380 --------~~~i~vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~  425 (458)
                              .+.|.++..   ++..|++.++...|-.+|-++|+++.+++|...||.-
T Consensus       168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~  224 (249)
T PF12436_consen  168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT  224 (249)
T ss_dssp             HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred             HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence                    156666553   3458999999999999999999999999999888753

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=94.88  E-value=0.17  Score=38.84  Aligned_cols=69  Identities=16%  Similarity=0.338  Sum_probs=58.3

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeec---cCCccccccccCCCCEEEEE
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  222 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L---~d~~tL~~y~i~~~s~i~l~  222 (458)
                      -+|.|+.++|+...-....++++++|...+.. .|.+++.+.|+  |--+.+   +.+.||.+.|+.+..+|.+-
T Consensus         6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq   79 (82)
T cd01773           6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ   79 (82)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence            46788999999999999999999999999998 57788989888  666666   33589999999999888664

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=94.86  E-value=0.17  Score=39.26  Aligned_cols=69  Identities=13%  Similarity=0.235  Sum_probs=55.4

Q ss_pred             ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeecc--------CCccccccccCCCCEEEE
Q 012714          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLHL  221 (458)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~--------d~~tL~~y~i~~~s~i~l  221 (458)
                      ..+|.|+.++|+.+.-....++|+++|...|... +-.++.+.|.  |--+.+.        .+.||.+.|+.+..+|.+
T Consensus         4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V   82 (85)
T cd01774           4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV   82 (85)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence            4577888999999988899999999999999654 4456778888  4447774        367999999998887755

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=94.77  E-value=0.2  Score=38.45  Aligned_cols=69  Identities=20%  Similarity=0.305  Sum_probs=57.6

Q ss_pred             ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeecc---CCccccccccCCCCEEEE
Q 012714          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL  221 (458)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~y~i~~~s~i~l  221 (458)
                      ..+|.|+.++|....-....++++++|...+... |.++..++|.  |--+.+.   .+.||.+.|+.+..+|.+
T Consensus         4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V   77 (80)
T cd01771           4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL   77 (80)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence            3567888999999999999999999999999875 7777888887  6677663   357999999999888765

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=94.47  E-value=0.26  Score=38.25  Aligned_cols=67  Identities=19%  Similarity=0.252  Sum_probs=46.2

Q ss_pred             cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE----cCe-ecCC-CCCccccCCCCCCEEEEEEEecCCCC
Q 012714          391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGK-QLED-GRTLADYNIQKESTLHLVLRLRGGEF  458 (458)
Q Consensus       391 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~----~G~-~L~d-~~tL~~~~i~~~~~i~~~~~~~~g~~  458 (458)
                      ...+-..+..+||..+.+.+.+.+.+ .++-||--    ++. .|.+ ..|+.|.++.+|-+|.+-.|..+|.|
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGtW   86 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGTW   86 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS--
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCCC
Confidence            45678899999999999999999999 66677743    222 4654 46999999999999988889999988

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=94.20  E-value=0.093  Score=48.17  Aligned_cols=69  Identities=29%  Similarity=0.433  Sum_probs=50.0

Q ss_pred             eeEEEEcCCCc-EEE-EEecCCCcHHHHHHHHHhhc-CCCCCceEEEE----cCeecCCCCCccccCCCCCCEEEE
Q 012714          381 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       381 ~~i~vk~~~g~-~~~-~~v~~~~tV~~lK~~i~~~~-~~~~~~q~Li~----~G~~L~d~~tL~~~~i~~~~~i~~  449 (458)
                      |.|++.+.++. ..+ ...+...|+.|+++.+.++. .+.+..+|+-+    .|+.|.|+.+|++|+...|++|.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            56777666542 233 55677889999997777754 46664444433    699999999999999999988853

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=93.62  E-value=0.49  Score=36.13  Aligned_cols=59  Identities=20%  Similarity=0.320  Sum_probs=42.1

Q ss_pred             eEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEEE
Q 012714          240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  298 (458)
Q Consensus       240 ~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~  298 (458)
                      .+...++-...+..||..++.+.+++.+.+.+...+..|+++++|.+.+++-..++.++
T Consensus         4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln   62 (88)
T PF11620_consen    4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN   62 (88)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred             eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence            34555666788999999999999999999999888877999999999999999998876

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=93.61  E-value=0.58  Score=35.96  Aligned_cols=69  Identities=16%  Similarity=0.326  Sum_probs=57.2

Q ss_pred             eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCcccC---CCcchhhcccccccceeEE
Q 012714           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV  146 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~---d~~tL~~~~i~~~s~i~l~  146 (458)
                      -+|.||.++|+...-....++++.+|-..+.. .|.+++...|+  |--+.+.   .+.||.+.|+.+.+++.+-
T Consensus         6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq   79 (82)
T cd01773           6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ   79 (82)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence            46889999999999999999999999999988 57788888887  5556653   3589999999988887653

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=93.54  E-value=0.93  Score=42.93  Aligned_cols=118  Identities=18%  Similarity=0.366  Sum_probs=80.4

Q ss_pred             EEEEc--CCCcEEE----EEeecCccHHHHHHHhhcccCCCCCceEEEEee------eeccCCCCcccccccccccccee
Q 012714            3 IFVKT--LTGKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLV   70 (458)
Q Consensus         3 i~~~~--~~g~~~~----~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g------~~L~d~~tl~~y~i~~~sti~l~   70 (458)
                      ||+|-  ...+++.    +-|..+++|.++=..|.+..|+|++...++|.-      ..++.+.|+....+++|+.|-+-
T Consensus        71 lFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ  150 (249)
T PF12436_consen   71 LFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQ  150 (249)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEE
T ss_pred             EEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEE
Confidence            56664  2333443    678999999999999999999999998888864      23677899999999999988776


Q ss_pred             Eeec--------------------CCeEEEEEec---CCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE
Q 012714           71 LRLR--------------------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI  120 (458)
Q Consensus        71 ~~~~--------------------~~~~i~vk~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~  120 (458)
                      ....                    ..+.|.++..   ++..|+++++...|-.+|-++|+++.|+.|...||.
T Consensus       151 ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~  223 (249)
T PF12436_consen  151 RAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF  223 (249)
T ss_dssp             E--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred             eccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence            6432                    1256666653   345799999999999999999999999999888876

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=93.51  E-value=0.68  Score=35.51  Aligned_cols=70  Identities=20%  Similarity=0.305  Sum_probs=56.8

Q ss_pred             CeEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEE--ecCccc---CCCCcccccccCCCCeEEEE
Q 012714          228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  298 (458)
Q Consensus       228 ~~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~--~~g~~l---~d~~tL~~y~I~~~~ti~l~  298 (458)
                      ...|.++.++|.++.-....++++++|..-+... |.++..+.|+  |--+.+   +.+.||.+-|+.+..+|.+.
T Consensus         4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve   78 (80)
T cd01771           4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE   78 (80)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence            4567788889999999999999999999999874 7778889887  444444   34679999999999888764

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=93.46  E-value=0.15  Score=38.68  Aligned_cols=55  Identities=24%  Similarity=0.335  Sum_probs=47.1

Q ss_pred             ecCCCcHHHHHHHHHhhcC-CCCCceEEEEcCeecCCCCCcccc-CCCCCCEEEEEE
Q 012714          397 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVL  451 (458)
Q Consensus       397 v~~~~tV~~lK~~i~~~~~-~~~~~q~Li~~G~~L~d~~tL~~~-~i~~~~~i~~~~  451 (458)
                      |.++++|.++++.+..... ..-....|.++|+.|+|...|+++ ++++|+.+.++-
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve   57 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE   57 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence            6789999999999998865 455677899999999999999998 588999998753

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=93.38  E-value=0.48  Score=43.72  Aligned_cols=123  Identities=21%  Similarity=0.297  Sum_probs=62.7

Q ss_pred             cEEEEEEeCCCCHHHHHHHHhHHhCCCCC---CeEEE--ecCcc---cCCCcchhhcccccccceeEEEEe------e--
Q 012714           87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGKQ---LEDGRTLADYNIQKESTLHLVLRL------R--  150 (458)
Q Consensus        87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~---~q~L~--~~G~~---L~d~~tL~~~~i~~~s~i~l~~~~------~--  150 (458)
                      +.+.+-|+.+.||.+|.++++++.+++.+   ..|+.  ++++.   +..+.++.+.  .+...+.+-.-+      .  
T Consensus        34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~  111 (213)
T PF14533_consen   34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE  111 (213)
T ss_dssp             -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence            35788899999999999999999998765   33433  55543   6667777765  222222221111      1  


Q ss_pred             --cceeeEEEec-------cCceEeeecCCCCcHHHHHHHHHHHhCCCC---CCeEEE--ecC-----eeccCCc--ccc
Q 012714          151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAG-----KQLEDGR--TLA  209 (458)
Q Consensus       151 --~~~~i~v~~~-------~g~~~~~~v~~~~tV~~LK~~I~~~~gip~---~~q~L~--~~g-----~~L~d~~--tL~  209 (458)
                        +.+.|.|-.+       .|-.+.+.|.++.|..++|++|+++.|+|-   +..++.  -.+     ..++|+.  .|.
T Consensus       112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~  191 (213)
T PF14533_consen  112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILF  191 (213)
T ss_dssp             --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT-T----
T ss_pred             cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceeccccchhhhh
Confidence              2233444433       256788899999999999999999999984   344444  233     4566654  444


Q ss_pred             cc
Q 012714          210 DY  211 (458)
Q Consensus       210 ~y  211 (458)
                      +-
T Consensus       192 ~~  193 (213)
T PF14533_consen  192 DE  193 (213)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=93.22  E-value=0.043  Score=52.46  Aligned_cols=73  Identities=26%  Similarity=0.376  Sum_probs=55.8

Q ss_pred             CeEEEEEecCC--cEEEEEEeCCCCHHHHHHHHhHHhC--CCCCCeEEEecCcccCCCcchhhcccc--cccceeEEEE
Q 012714           76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVLR  148 (458)
Q Consensus        76 ~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~~~i~--~~s~i~l~~~  148 (458)
                      +..+.||..+.  +..++..+..+||++||..++...-  --..+|||+|.||.|.|...+.+.-++  ...++||+..
T Consensus         9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcn   87 (391)
T KOG4583|consen    9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCN   87 (391)
T ss_pred             ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence            45677887765  4677888889999999999987653  234679999999999999999987654  3345666553

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=93.10  E-value=0.6  Score=43.08  Aligned_cols=104  Identities=20%  Similarity=0.286  Sum_probs=59.5

Q ss_pred             ceEeeecCCCCcHHHHHHHHHHHhCCCCC---CeEEE--ecCee---ccCCccccccccCCCCEEEEEEEe------c--
Q 012714          163 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGKQ---LEDGRTLADYNIQKESTLHLVLRL------R--  226 (458)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~---~q~L~--~~g~~---L~d~~tL~~y~i~~~s~i~l~~~~------~--  226 (458)
                      +.+.+-++.+.||++|.+.++.+.+++.+   ..++.  ++++.   +..+.++...  .+...+.+-.-+      .  
T Consensus        34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~  111 (213)
T PF14533_consen   34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE  111 (213)
T ss_dssp             -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence            45788999999999999999999999765   44544  56654   4667777765  333344333111      1  


Q ss_pred             --CCeEEEEEc-------cCCceEEEeecccchHHHHHHHHhhhcCCCCCc
Q 012714          227 --GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ  268 (458)
Q Consensus       227 --~~~~I~V~~-------~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~  268 (458)
                        +..-|.|.-       ..|-.+.+.|.+++|++++|..|++++|+|-..
T Consensus       112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke  162 (213)
T PF14533_consen  112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKE  162 (213)
T ss_dssp             --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred             cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence              112233322       236788899999999999999999999998765

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=92.77  E-value=0.65  Score=35.29  Aligned_cols=66  Identities=26%  Similarity=0.308  Sum_probs=51.2

Q ss_pred             EEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-CCCceEEEE----cC--eecCCCCCccccCCC--CCCEEEEE
Q 012714          385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF----AG--KQLEDGRTLADYNIQ--KESTLHLV  450 (458)
Q Consensus       385 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~----~G--~~L~d~~tL~~~~i~--~~~~i~~~  450 (458)
                      |+.++|+..+++|+++.|+.+|=++|+.+.|+ +.+-.-|.|    +|  .-|+.+++|.++...  ...++++.
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr   75 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR   75 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence            57889999999999999999999999999997 556677888    22  246788899998776  34444443

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=92.45  E-value=0.72  Score=35.04  Aligned_cols=62  Identities=24%  Similarity=0.347  Sum_probs=48.2

Q ss_pred             EEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc-eEEEe----cCc--ccCCCCcccccccCCCCe
Q 012714          233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----AGK--QLEDGRTLADYNIQKEST  294 (458)
Q Consensus       233 V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~-q~L~~----~g~--~l~d~~tL~~y~I~~~~t  294 (458)
                      |..++|...+++++++.|+++|-++|+++.||.... +-|.+    +|.  -|+.++++..+....+..
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~   69 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPP   69 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSS
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCC
Confidence            456788999999999999999999999999988766 55777    111  267888999998773443

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=91.82  E-value=0.32  Score=44.80  Aligned_cols=69  Identities=28%  Similarity=0.371  Sum_probs=48.7

Q ss_pred             eeeEEEeccC-ceEe-eecCCCCcHHHHHHHHHH-HhCCCCCCeEEE----ecCeeccCCccccccccCCCCEEEE
Q 012714          153 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQD-KEGIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHL  221 (458)
Q Consensus       153 ~~i~v~~~~g-~~~~-~~v~~~~tV~~LK~~I~~-~~gip~~~q~L~----~~g~~L~d~~tL~~y~i~~~s~i~l  221 (458)
                      |.|++...++ ..+. ...+...|+.|+++.+.. ...+-+..+|+.    -+|+.|-|+.+|++|+..+|.++.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            4556655543 2344 556678899999976654 456666544444    5799999999999999999977654

>PRK06437 hypothetical protein; Provisional

Probab=91.75  E-value=1.4  Score=32.46  Aligned_cols=59  Identities=19%  Similarity=0.323  Sum_probs=46.2

Q ss_pred             ccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecC
Q 012714          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (458)
Q Consensus       160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~  227 (458)
                      .+++.-.++++...||++|-+.    .|+++....+..+|+.+.     .++-+++|+.+.++....|
T Consensus         8 ~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~G   66 (67)
T PRK06437          8 KGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSG   66 (67)
T ss_pred             cCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccC
Confidence            3556677888888999988654    488888888889999986     6678889999988765443

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=91.75  E-value=0.27  Score=37.27  Aligned_cols=59  Identities=22%  Similarity=0.285  Sum_probs=47.3

Q ss_pred             ecCCCcHHHHHHhhhcccC-CCCCCeeEEecCeecCCCCCcccc-cccCCCeEEEEEeecC
Q 012714          321 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRG  379 (458)
Q Consensus       321 v~~~~ti~~lK~~I~~~~~-i~~~~q~L~~~g~~L~~~~~l~~y-~I~~~~~l~l~~~~~~  379 (458)
                      |.|.++|.+++.-+..... ..-....|.++|..|++...|++. |+..++++.++.....
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pYt   61 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPYT   61 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCCC
Confidence            5788999999999887643 333457799999999999999888 6888999999876543

>PRK06437 hypothetical protein; Provisional

Probab=90.12  E-value=2.6  Score=31.02  Aligned_cols=58  Identities=21%  Similarity=0.385  Sum_probs=44.2

Q ss_pred             CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       390 g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      ++.-.++++.+.||.+|-+    +.|++++...+..+|+.+.     .++-+++||.|-++--..||
T Consensus        10 ~~~~~~~i~~~~tv~dLL~----~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG   67 (67)
T PRK06437         10 HINKTIEIDHELTVNDIIK----DLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG   67 (67)
T ss_pred             CcceEEEcCCCCcHHHHHH----HcCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence            3445678888899988764    3588889999999999997     66678899999765444443

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=90.09  E-value=1  Score=34.95  Aligned_cols=43  Identities=14%  Similarity=0.286  Sum_probs=38.1

Q ss_pred             EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC---CceEEEE
Q 012714          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF  425 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~---~~q~Li~  425 (458)
                      +.++++.|+...+.+.|++.+.+|++.|+++.|.+.   +...|.|
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            567889999999999999999999999999999876   4667777

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=89.54  E-value=3.2  Score=30.80  Aligned_cols=66  Identities=14%  Similarity=0.234  Sum_probs=46.4

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |+|++... +....++++++.||.+|-+.+    +++++...+..+|+.+..     +.-+++||.|-++--..||
T Consensus         5 m~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG   70 (70)
T PRK08364          5 IRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG   70 (70)
T ss_pred             EEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence            45555332 134678889999999887655    677777888889999853     5568899999765444444

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=89.37  E-value=1  Score=33.69  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=40.6

Q ss_pred             EEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecC
Q 012714          231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  275 (458)
Q Consensus       231 I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g  275 (458)
                      +.|..++|+...+.++++.|+.++=++++++.|+.+..+.+...|
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            346678999999999999999999999999999999999888754

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>smart00455 RBD Raf-like Ras-binding domain

Probab=89.10  E-value=1.1  Score=33.27  Aligned_cols=44  Identities=20%  Similarity=0.293  Sum_probs=40.1

Q ss_pred             EEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecC
Q 012714          232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  275 (458)
Q Consensus       232 ~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g  275 (458)
                      .|..++|+...+.++++.|+.++=+.++++.|+.++...+...|
T Consensus         3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            46678899999999999999999999999999999999988854

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=89.08  E-value=1.3  Score=39.76  Aligned_cols=60  Identities=18%  Similarity=0.318  Sum_probs=49.6

Q ss_pred             EeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE-ecC-----eec-cCCccccccccCCCCEEEEEEE
Q 012714          165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLR  224 (458)
Q Consensus       165 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~-~~g-----~~L-~d~~tL~~y~i~~~s~i~l~~~  224 (458)
                      .....+++.|++++|.+++-.+|.+++.+.|. |.|     ..| +++..|..|+..+|-.||++-.
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~   81 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS   81 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence            44567789999999999999999999999987 554     234 5678999999999998887743

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=88.93  E-value=1.5  Score=33.53  Aligned_cols=60  Identities=20%  Similarity=0.333  Sum_probs=42.4

Q ss_pred             EeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEE
Q 012714          165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (458)
Q Consensus       165 ~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~  224 (458)
                      +...++-..++..||..++.+.+++-+...+...+..|+++++|.+-+++-...+.+.+.
T Consensus         5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ   64 (88)
T PF11620_consen    5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ   64 (88)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred             EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence            445566678899999999999999999999999998899999999999998887776653

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=88.40  E-value=1.6  Score=32.65  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=39.9

Q ss_pred             EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC
Q 012714          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  427 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G  427 (458)
                      +.|-.++|+.-.+.|.|+.|+.++=+++.++.|+.++...+.+.|
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            467789999999999999999999999999999988887777654

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=88.11  E-value=2.1  Score=32.35  Aligned_cols=60  Identities=13%  Similarity=0.243  Sum_probs=45.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHhhcCC----CCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          392 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       392 ~~~~~v~~~~tV~~lK~~i~~~~~~----~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      ...++++.+.||.+|.+.+..+++-    ......+..+|+...     .+.-+++||.|.++--..||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG   80 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence            3567888889999999999988642    334566777888887     45578999999887655555

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>smart00455 RBD Raf-like Ras-binding domain

Probab=88.02  E-value=2.4  Score=31.55  Aligned_cols=51  Identities=22%  Similarity=0.286  Sum_probs=43.4

Q ss_pred             EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC--eecCCC
Q 012714          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDG  433 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G--~~L~d~  433 (458)
                      +.|-.++|+...+.+.|+.|+.++=+.+.++.|+.++...+...|  +.|+-+
T Consensus         2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~   54 (70)
T smart00455        2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLN   54 (70)
T ss_pred             eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecC
Confidence            356788999999999999999999999999999999999888855  455433

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=88.01  E-value=2.5  Score=32.25  Aligned_cols=37  Identities=19%  Similarity=0.355  Sum_probs=34.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe
Q 012714          392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  428 (458)
Q Consensus       392 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~  428 (458)
                      ++.++|.++.+..+|.++|.++.++|++...|-|...
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde   48 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE   48 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence            7889999999999999999999999999999999644

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=87.31  E-value=2.4  Score=32.04  Aligned_cols=60  Identities=13%  Similarity=0.243  Sum_probs=44.8

Q ss_pred             eEeeecCCCCcHHHHHHHHHHHhCC----CCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~I~~~~gi----p~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      ...++++.+.||.+|.+.+...++-    ......+.-+|+...     .++-+++|+.|.++....||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG   80 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence            4667888889999999999887642    334556677888776     45678999999888766554

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=86.61  E-value=2  Score=33.37  Aligned_cols=43  Identities=14%  Similarity=0.248  Sum_probs=36.4

Q ss_pred             eEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCC---CeEEEe
Q 012714          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLIF  197 (458)
Q Consensus       155 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~---~q~L~~  197 (458)
                      ..++.+.|+.+.+.+.++..+.+|++.|.++.|+...   ...|.|
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            3567789999999999999999999999999999864   555555

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e

Probab=86.35  E-value=1.1  Score=46.87  Aligned_cols=68  Identities=32%  Similarity=0.448  Sum_probs=44.8

Q ss_pred             CCceEEEeecCCCcHHHHHHhhhcc--cCCCCC------CeeEEec----C-eecCCCC-------------Cccccccc
Q 012714          313 TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA----G-KQLEDGR-------------TLADYNIQ  366 (458)
Q Consensus       313 ~g~~~~l~v~~~~ti~~lK~~I~~~--~~i~~~------~q~L~~~----g-~~L~~~~-------------~l~~y~I~  366 (458)
                      ....+.+.|..+|||..+|++|.+.  .+.|..      .-.|...    | ..|.|.+             ||+.|||.
T Consensus       200 ~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~  279 (539)
T PF08337_consen  200 GSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVP  279 (539)
T ss_dssp             SSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--
T ss_pred             CCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCC
Confidence            3456899999999999999999873  333331      2224332    2 3677732             88999999


Q ss_pred             CCCeEEEEEeecCc
Q 012714          367 KESTLHLVLRLRGG  380 (458)
Q Consensus       367 ~~~~l~l~~~~~~~  380 (458)
                      +|+++-|+++..+.
T Consensus       280 dga~vaLv~k~~~~  293 (539)
T PF08337_consen  280 DGATVALVPKQHSS  293 (539)
T ss_dssp             TTEEEEEEES----
T ss_pred             CCceEEEeeccccc
Confidence            99999999886433

g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=86.15  E-value=2.5  Score=32.22  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCee
Q 012714          164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ  201 (458)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~  201 (458)
                      ++.+.+++..+.++|.++|.++.++|++...|.|....
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~   49 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA   49 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence            88999999999999999999999999999999987654

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=86.09  E-value=2.3  Score=38.18  Aligned_cols=59  Identities=19%  Similarity=0.321  Sum_probs=48.4

Q ss_pred             EEEEecCCCcHHHHHHHHHhhcCCCCCceEEE-EcC-----eecC-CCCCccccCCCCCCEEEEEE
Q 012714          393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       393 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li-~~G-----~~L~-d~~tL~~~~i~~~~~i~~~~  451 (458)
                      ++-+.+++.||.+||.+++...|.+++.+.|. |.|     -.|. ++..|..|...+|-.||++=
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD   80 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID   80 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence            45667899999999999999999999988875 443     2344 56799999999999999863

>KOG4261 consensus Talin [Cytoskeleton]

Probab=86.06  E-value=0.43  Score=50.72  Aligned_cols=173  Identities=24%  Similarity=0.305  Sum_probs=116.5

Q ss_pred             CceEeeecCCCCcHHHHHHHHHHHhCC---CCCCeEEE------ecCeeccCCccccccccCCCCEEEEEEEecCCeEEE
Q 012714          162 GKTITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLI------FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  232 (458)
Q Consensus       162 g~~~~~~v~~~~tV~~LK~~I~~~~gi---p~~~q~L~------~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~~I~  232 (458)
                      +-.-++.+.|+++|.+-=..|.+++.-   -+..+.|+      -.|-.|+.+++|.+|-+.+++++...-+.   -+..
T Consensus        12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~---r~lk   88 (1003)
T KOG4261|consen   12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQ---RPLK   88 (1003)
T ss_pred             ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhc---ccce
Confidence            334567888999999988888877632   14444444      24677899999999999999998655433   3456


Q ss_pred             EEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc-eEEEecCcccCCCCcccccccCCCCeEEEEEeecCceeEEEEc
Q 012714          233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT  311 (458)
Q Consensus       233 V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~-q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~~~~~~~~~i~v~~  311 (458)
                      |...+|..-++.|..+.+|.+|---||.+-||.-.. |.|.-...+++++.-        +.|+.+...           
T Consensus        89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvre~~~~~~~~~--------tgtl~~~~~-----------  149 (1003)
T KOG4261|consen   89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVREDIEEQNEEG--------TGTLNLKRK-----------  149 (1003)
T ss_pred             eeecccccceeeecccccHHHHHHHHHhccCccchhhhhhhHHHHHHhcCCC--------CceEEeehh-----------
Confidence            778888888889999999999999999999976544 666655544443311        134333211           


Q ss_pred             cCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCCeEEEEE
Q 012714          312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  375 (458)
Q Consensus       312 ~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~~l~l~~  375 (458)
                            +|+=+  --.+.||++...-...+|           |+..+++++-||..+-++++.-
T Consensus       150 ------~m~~~--~kme~Lkkkl~td~el~w-----------ld~~rtlreqgide~et~llRr  194 (1003)
T KOG4261|consen  150 ------LMRKE--RKMEKLRKKLHTDDELNW-----------LDHSRTLREQGIDEEETLLLRR  194 (1003)
T ss_pred             ------HHHhh--hhhHHHHhhcccchhhhh-----------HHHhHHHHhcCccHHHHHHHHH
Confidence                  11111  155666666655444555           5667788888887777777654

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=84.98  E-value=8.1  Score=28.60  Aligned_cols=56  Identities=13%  Similarity=0.222  Sum_probs=42.4

Q ss_pred             eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      ...++++.+.||++|-+.+    ++++..-.+..+|+...     .+.-+++|+.+.++....||
T Consensus        15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~V~GG   70 (70)
T PRK08364         15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPVVSGG   70 (70)
T ss_pred             ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEccccCC
Confidence            4567888889999988666    67777777778998884     36668899999887655443

>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor

Probab=84.98  E-value=2.4  Score=31.77  Aligned_cols=50  Identities=8%  Similarity=0.139  Sum_probs=41.7

Q ss_pred             EEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCC
Q 012714          232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG  281 (458)
Q Consensus       232 ~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~  281 (458)
                      .|..++|+..++.+++++|+.++=+..|.+.++.|..+.|--+...|+|.
T Consensus         3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~   52 (77)
T cd01818           3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH   52 (77)
T ss_pred             EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence            46778999999999999999999999999999999998776544434443

Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=84.92  E-value=3.6  Score=31.42  Aligned_cols=71  Identities=20%  Similarity=0.265  Sum_probs=46.5

Q ss_pred             eeEEEEcC------CC-cEEEEEecCCCcHHHHHHHHHhhcC-CCC--CceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714          381 MQIFVKTL------TG-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       381 ~~i~vk~~------~g-~~~~~~v~~~~tV~~lK~~i~~~~~-~~~--~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      |+|+|+..      .| ...+++++.+.||.+|.+.+..+.. +..  ....+..+|+...     .+.-+++||.|.++
T Consensus         2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~   76 (82)
T PLN02799          2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII   76 (82)
T ss_pred             eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence            56666654      24 4567888889999999999987752 111  1234566777764     34467889999775


Q ss_pred             EEecCC
Q 012714          451 LRLRGG  456 (458)
Q Consensus       451 ~~~~~g  456 (458)
                      --..||
T Consensus        77 PpvsGG   82 (82)
T PLN02799         77 PPISGG   82 (82)
T ss_pred             CCCCCC
Confidence            444443

>smart00295 B41 Band 4

Probab=84.10  E-value=6.8  Score=35.40  Aligned_cols=70  Identities=29%  Similarity=0.359  Sum_probs=50.1

Q ss_pred             eEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc-eEEEecC------cccCCCCcccccccCC-CCeEEEE
Q 012714          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG------KQLEDGRTLADYNIQK-ESTLHLV  298 (458)
Q Consensus       229 ~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~-q~L~~~g------~~l~d~~tL~~y~I~~-~~ti~l~  298 (458)
                      ..+.|..++|.+..+.+++++|++++...++.+.||+... +.|.+..      .-++..+++.+..... ...+++.
T Consensus         4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr   81 (207)
T smart00295        4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR   81 (207)
T ss_pred             EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence            4566788899999999999999999999999999997655 4455422      1245566777666552 3344443

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=83.82  E-value=7.9  Score=29.78  Aligned_cols=42  Identities=12%  Similarity=0.154  Sum_probs=34.8

Q ss_pred             ccCceEeeecCCCCcHHHHHHHHHHHhCCCC-CCeEEEecCee
Q 012714          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ  201 (458)
Q Consensus       160 ~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~-~~q~L~~~g~~  201 (458)
                      .+|..+.+.++++.+..+|++.|++++++.. ....|.|....
T Consensus         7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde   49 (82)
T cd06407           7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD   49 (82)
T ss_pred             eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence            4677899999999999999999999999865 56777775443

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=83.58  E-value=6.9  Score=30.47  Aligned_cols=62  Identities=19%  Similarity=0.217  Sum_probs=42.1

Q ss_pred             ceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEe----cC-eec-cCCccccccccCCCCEEEEEEEe
Q 012714          163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AG-KQL-EDGRTLADYNIQKESTLHLVLRL  225 (458)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~----~g-~~L-~d~~tL~~y~i~~~s~i~l~~~~  225 (458)
                      ..++..+...+||+.+...+.+.+.| ...-||--    ++ ..| +.+.|+.+.|+.+|..|.+-.+.
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn   81 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN   81 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence            35667788999999999999999999 56678763    22 234 45679999999999988766554

>TIGR03028 EpsE polysaccharide export protein EpsE

Probab=82.85  E-value=42  Score=31.45  Aligned_cols=207  Identities=15%  Similarity=0.219  Sum_probs=110.6

Q ss_pred             ccccCCCCEEEEEEEecCCeEEEEEccCCceEEEe----ec-ccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcc
Q 012714          210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE----VE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL  284 (458)
Q Consensus       210 ~y~i~~~s~i~l~~~~~~~~~I~V~~~~g~~i~~~----v~-~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL  284 (458)
                      +|-+.+|+.|.+.+--.......+......++.+-    ++ ..-|++++.+.|..++.-          +         
T Consensus         1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------~---------   61 (239)
T TIGR03028         1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSK----------G---------   61 (239)
T ss_pred             CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh----------c---------
Confidence            47788999998876543333222233222233332    33 477999999999876410          0         


Q ss_pred             cccccCCCCeEEEEEeecCceeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCee---EE--ecCee------
Q 012714          285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---LI--FAGKQ------  353 (458)
Q Consensus       285 ~~y~I~~~~ti~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~---L~--~~g~~------  353 (458)
                       .|-..  ..+.+.+....+..|+|-..-.+.-.+.+.++.|+.+.   |..-.|+.+....   +.  -+|+.      
T Consensus        62 -~~~~~--p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~a---i~~AGG~~~~~~~~~~i~~~~~g~~~~~~id  135 (239)
T TIGR03028        62 -GFVKQ--PQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDV---LALAGGVTPDGADVITLVREREGKIFRKQID  135 (239)
T ss_pred             -CcccC--CEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHH---HHHcCCCCccCCCeEEEEEecCCeEEEEEEE
Confidence             01111  22333333334456777555555556777777887765   4444555543211   11  12332      


Q ss_pred             ----cCCCCCcccccccCCCeEEEEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCC----CCceEEEE
Q 012714          354 ----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP----PDQQRLIF  425 (458)
Q Consensus       354 ----L~~~~~l~~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~----~~~q~Li~  425 (458)
                          +.++..-.++-++++++|++-..    -.++|--.-++.-.+++.++.|+.+   .|+.--|+.    +....++.
T Consensus       136 l~~l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~---al~~aGG~~~~a~~~~v~i~R  208 (239)
T TIGR03028       136 FPALFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQ---ALAQGGGLTPRGTERGIRVMR  208 (239)
T ss_pred             HHHHHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHH---HHHhcCCCCcccCcceEEEEE
Confidence                33444556788999999998532    2455533334444677778887755   455555542    22333332


Q ss_pred             ---cCeecCCCCCccccCCCCCCEEEE
Q 012714          426 ---AGKQLEDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       426 ---~G~~L~d~~tL~~~~i~~~~~i~~  449 (458)
                         +|+.-.-...+.+ .+++||+|++
T Consensus       209 ~~~~g~~~~~~~~~~~-~l~~gDii~V  234 (239)
T TIGR03028       209 RDDKGAVEEVSGELGD-LVQPDDVIYV  234 (239)
T ss_pred             ECCCCcEEEEecCCCc-ccCCCCEEEE
Confidence               2432111112222 4899999975

Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=82.75  E-value=7.4  Score=28.23  Aligned_cols=60  Identities=15%  Similarity=0.317  Sum_probs=41.2

Q ss_pred             cCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       161 ~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      +|+.+.+  + ..|+.+|.+.+    ++++....+..+++... ....++.-+++|+.|.++....||
T Consensus         6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG   65 (65)
T PRK06488          6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG   65 (65)
T ss_pred             CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence            4666665  3 45899888755    66666566778888775 233456778999999988765554

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=81.96  E-value=2  Score=42.02  Aligned_cols=61  Identities=21%  Similarity=0.341  Sum_probs=55.2

Q ss_pred             CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC--CCccccCCCCCCEEEE
Q 012714          389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHL  449 (458)
Q Consensus       389 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~--~tL~~~~i~~~~~i~~  449 (458)
                      ..+.+.++|..+-....|+..+....|++....-|+|+++++.++  +++.+|+++.++.+.+
T Consensus        11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~l   73 (380)
T KOG0012|consen   11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLAL   73 (380)
T ss_pred             ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEec
Confidence            567788999999999999999999999999999999999999865  7899999999999854

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=81.84  E-value=6.2  Score=28.01  Aligned_cols=46  Identities=13%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             EEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714          394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       394 ~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      .+++..+.|..+||+++...      .=.+|++|-...++.     -+++||.|.++
T Consensus         9 ~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~-----~L~e~D~v~~I   54 (57)
T PF14453_consen    9 EIETEENTTLFELRKESKPD------ADIVILNGFPTKEDI-----ELKEGDEVFLI   54 (57)
T ss_pred             EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCcc-----ccCCCCEEEEE
Confidence            48889999999999876654      227899998887655     56778999543

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=81.59  E-value=5.8  Score=30.29  Aligned_cols=61  Identities=16%  Similarity=0.241  Sum_probs=40.5

Q ss_pred             ceEeeecCCCCcHHHHHHHHHHHh-CCCC--CCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          163 KTITLEVESSDTIDNVKAKIQDKE-GIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~I~~~~-gip~--~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      ....++++...||++|.+.+.... ++..  ..-.+..+|+...     .++-+++|++|.++.+..||
T Consensus        19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG   82 (82)
T PLN02799         19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG   82 (82)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence            446678888999999999997665 1111  1123556777654     44567889999887655543

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=81.59  E-value=6  Score=29.49  Aligned_cols=57  Identities=19%  Similarity=0.237  Sum_probs=41.9

Q ss_pred             EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecCCCCCcccc
Q 012714          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY  439 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~d~~tL~~~  439 (458)
                      +.|..++|+...+.+.|+.||.++-..+.++.|+.++...+..  ..+.|..++..+..
T Consensus         3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~L   61 (71)
T PF02196_consen    3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSSL   61 (71)
T ss_dssp             EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGGG
T ss_pred             EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceeee
Confidence            5677899999999999999999999999999999888766654  34566655555443

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>smart00666 PB1 PB1 domain

Probab=81.55  E-value=5.6  Score=30.14  Aligned_cols=46  Identities=15%  Similarity=0.335  Sum_probs=37.4

Q ss_pred             eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe
Q 012714          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  428 (458)
Q Consensus       382 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~  428 (458)
                      .+.++. .|....+.++++.|..+|+.+|+.+++.+.....|-|...
T Consensus         3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De   48 (81)
T smart00666        3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE   48 (81)
T ss_pred             cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence            344544 5677789999999999999999999998877888888643

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=81.17  E-value=7.3  Score=28.04  Aligned_cols=65  Identities=23%  Similarity=0.463  Sum_probs=48.9

Q ss_pred             cCceEeeecCCCCcHHHHHHHHHHH---hCCCCCCeEEE-ecCeeccCCccccccccCCCCEEEEEEEe
Q 012714          161 TGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (458)
Q Consensus       161 ~g~~~~~~v~~~~tV~~LK~~I~~~---~gip~~~q~L~-~~g~~L~d~~tL~~y~i~~~s~i~l~~~~  225 (458)
                      +|+...++.+++...--+.++--+.   .|-|++.-.|. -+|..|+-++.+.|||+.+|-++.|.++.
T Consensus         4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA   72 (76)
T PF10790_consen    4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA   72 (76)
T ss_pred             CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence            5677778877777655555544333   35688877776 57889999999999999999999888764

>smart00295 B41 Band 4

Probab=81.01  E-value=14  Score=33.24  Aligned_cols=72  Identities=28%  Similarity=0.332  Sum_probs=52.1

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEEc---C---eecCCCCCccccCCC-CCCEEEEE
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G---KQLEDGRTLADYNIQ-KESTLHLV  450 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~~---G---~~L~d~~tL~~~~i~-~~~~i~~~  450 (458)
                      .++.+.|..++|+...+.+++.+|+.++-+.++.+.|++. ...-|.+.   +   .-|+...++.+...+ ....+++.
T Consensus         2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr   81 (207)
T smart00295        2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR   81 (207)
T ss_pred             CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence            4678899999999999999999999999999999999844 33334432   1   346666777776654 23444443

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=80.77  E-value=8.4  Score=27.96  Aligned_cols=61  Identities=15%  Similarity=0.321  Sum_probs=41.6

Q ss_pred             CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       388 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      .+|+.+.+  + ..|+.+|.+.+    +++++....-.+|+.+. ...-++.-+++||.|-++-=..||
T Consensus         5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG   65 (65)
T PRK06488          5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG   65 (65)
T ss_pred             ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence            35666555  3 45898888654    56666677788998887 334456678999999765545554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		3e-80
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		3e-80
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		3e-80
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		3e-80
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-79
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-79
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-79
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-79
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-79
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-79
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-79
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-79
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-79
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		7e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		7e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		7e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		7e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		7e-79
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		3e-78
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		3e-78
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		3e-78
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		3e-78
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		3e-78
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		7e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		7e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		7e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		7e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		7e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-37
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		1e-37
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		1e-37
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		1e-37
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		1e-37
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		5e-36
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		5e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		5e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		5e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		5e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		5e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		7e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		7e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		7e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		7e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		7e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		7e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		9e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-37
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-36
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-36
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-36
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-36
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		3e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		3e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		3e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		3e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		3e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		6e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		6e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		6e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		6e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		6e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		7e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		7e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		7e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		7e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		7e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		7e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		7e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		7e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		7e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		7e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		7e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		7e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		8e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		8e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		8e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		8e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		8e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		8e-36
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		8e-36
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-35
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-35
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-35
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-35
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		7e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		7e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		7e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		7e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		7e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		9e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		9e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		9e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		9e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		9e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		9e-35
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-34
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-34
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-34
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-34
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		4e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		4e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		4e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		4e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		4e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		5e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		5e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		5e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		5e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		5e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		5e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		1e-33
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		1e-33
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		1e-33
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		1e-33
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-32
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-32
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-32
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-32
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		4e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		4e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		4e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		4e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		4e-32
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		1e-30
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		1e-30
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		1e-30
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		1e-30
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		2e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
4hk2_A	78	U7ub25.2540 Length = 78		7e-30
4hk2_A	78	U7ub25.2540 Length = 78		7e-30
4hk2_A	78	U7ub25.2540 Length = 78		7e-30
4hk2_A	78	U7ub25.2540 Length = 78		7e-30
4hk2_A	78	U7ub25.2540 Length = 78		7e-30
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		7e-22
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		7e-22
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		7e-22
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		7e-22
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		7e-22
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-20
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-20
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-20
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-20
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		7e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		7e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		7e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		7e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		7e-20
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-19
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-19
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-19
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-19
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		5e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		5e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		5e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		5e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		5e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		5e-19
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		1e-18
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		1e-18
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		1e-18
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		1e-18
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		1e-18
3sdl_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		6e-12
3sdl_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		6e-12
3sdl_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		6e-12
3sdl_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		6e-12
3r66_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		1e-11
3r66_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		1e-11
3r66_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		1e-11
3r66_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		1e-11
3rt3_B	159	Complex Of Influenza Virus Protein With Host Anti-V		2e-11
3rt3_B	159	Complex Of Influenza Virus Protein With Host Anti-V		2e-11
3rt3_B	159	Complex Of Influenza Virus Protein With Host Anti-V		2e-11
3rt3_B	159	Complex Of Influenza Virus Protein With Host Anti-V		2e-11
3pse_B	156	Structure Of A Viral Otu Domain Protease Bound To I		7e-11
3pse_B	156	Structure Of A Viral Otu Domain Protease Bound To I		7e-11
3pse_B	156	Structure Of A Viral Otu Domain Protease Bound To I		7e-11
3pse_B	156	Structure Of A Viral Otu Domain Protease Bound To I		7e-11
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-10
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-10
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-10
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-10
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-10
1z2m_A	155	Crystal Structure Of Isg15, The Interferon-Induced		4e-10
1z2m_A	155	Crystal Structure Of Isg15, The Interferon-Induced		4e-10
1z2m_A	155	Crystal Structure Of Isg15, The Interferon-Induced		4e-10
1z2m_A	155	Crystal Structure Of Isg15, The Interferon-Induced		4e-10
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		2e-08
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		2e-08
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		2e-08
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		2e-08
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		2e-08
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-07
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-07
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-07
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-07
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-07
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		2e-07
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		2e-07
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		2e-07
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		2e-07
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		5e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		4e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		4e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		4e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		4e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		4e-07
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		8e-07
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		8e-07
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		8e-07
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		8e-07
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		8e-07
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		4e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		4e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		4e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		4e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		4e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		5e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		5e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		5e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		5e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		5e-06
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		5e-06
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		5e-06
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		5e-06
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		5e-06
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		8e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		8e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		8e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		8e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		8e-06
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		9e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		9e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		9e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		9e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		9e-05
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/154 (95%), Positives = 151/154 (98%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 194
           YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQR
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/154 (95%), Positives = 151/154 (98%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 211 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 270
           YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQR
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 271 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/154 (95%), Positives = 151/154 (98%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 287 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 346
           YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQR
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 347 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/154 (95%), Positives = 151/154 (98%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 363 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422
           YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQR
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 423 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  291 bits (744), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 2   QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 122 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  291 bits (744), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 198 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  291 bits (744), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 274 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  291 bits (744), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 350 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  291 bits (744), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 426 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (738), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (738), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (738), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 303
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (738), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (738), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (390), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGM 77
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (390), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGM 153
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (390), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGGM 229
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (390), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGGM 305
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (390), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGGM 381
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 136 NIQKESTLHLVLRLRGGMQIFVK 158
           NIQKESTLHLVLRLRGG Q F K
Sbjct: 165 NIQKESTLHLVLRLRGGGQTFTK 187

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 212 NIQKESTLHLVLRLRGGMQIFVK 234
           NIQKESTLHLVLRLRGG Q F K
Sbjct: 165 NIQKESTLHLVLRLRGGGQTFTK 187

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 288 NIQKESTLHLVLRLRGGMQIFVK 310
           NIQKESTLHLVLRLRGG Q F K
Sbjct: 165 NIQKESTLHLVLRLRGGGQTFTK 187

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 364 NIQKESTLHLVLRLRGGMQIFVK 386
           NIQKESTLHLVLRLRGG Q F K
Sbjct: 165 NIQKESTLHLVLRLRGGGQTFTK 187

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 165 NIQKESTLHLVLRLRGG 181

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1  MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 61 IQKESTLHLVLRLRGGM 77
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 137 IQKESTLHLVLRLRGGM 153
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 213 IQKESTLHLVLRLRGGM 229
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 289 IQKESTLHLVLRLRGGM 305
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 365 IQKESTLHLVLRLRGGM 381
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (381), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (381), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (381), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (381), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (381), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLR-GGMQIFVKTLTGK 87
          IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61 IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLR-GGMQIFVKTLTGK 163
           IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61  IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLR-GGMQIFVKTLTGK 239
           IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61  IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLR-GGMQIFVKTLTGK 315
           IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61  IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLR-GGMQIFVKTLTGK 391
           IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61  IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 81 IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 83 IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 287 YNIQKESTLHLVLRLRGG 304
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 363 YNIQKESTLHLVLRLRGG 380
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 439 YNIQKESTLHLVLRLRGG 456
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 76/77 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGGE 457
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGD 77

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 63 IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 134 DYNIQKESTLHLVLRLRG 151
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 210 DYNIQKESTLHLVLRLRG 227
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 286 DYNIQKESTLHLVLRLRG 303
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 362 DYNIQKESTLHLVLRLRG 379
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 438 DYNIQKESTLHLVLRLRG 455
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLH VLRLRGG
Sbjct: 61 IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 76/77 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 441 IQKESTLHLVLRLRGGE 457
           IQKESTLHLVLRLRGG+
Sbjct: 64  IQKESTLHLVLRLRGGD 80

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 64 IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRG 151
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRG 227
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 288 NIQKESTLHLVLRLRG 303
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 364 NIQKESTLHLVLRLRG 379
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 440 NIQKESTLHLVLRLRG 455
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8  MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 68 IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 64 IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/80 (88%), Positives = 75/80 (93%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+D
Sbjct: 8   GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSD 67
Query: 439 YNIQKESTLHLVLRLRGGEF 458
           YNIQ+ESTLHLVLRLRGG  
Sbjct: 68  YNIQRESTLHLVLRLRGGSM 87

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRG 303
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRG 379
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRG 455
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 133 ADYNIQKESTLHLVLRLR 150
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 209 ADYNIQKESTLHLVLRLR 226
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 285 ADYNIQKESTLHLVLRLR 302
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 361 ADYNIQKESTLHLVLRLR 378
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 437 ADYNIQKESTLHLVLRLR 454
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRG 303
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRG 379
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRG 455
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRG 303
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRG 379
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRG 455
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRG 303
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRG 379
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRG 455
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
          QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62 QKESTLHLVLRLRGG 76
          QKESTLHLVLRLRGG
Sbjct: 62 QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 138 QKESTLHLVLRLRGG 152
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 214 QKESTLHLVLRLRGG 228
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 290 QKESTLHLVLRLRGG 304
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 366 QKESTLHLVLRLRGG 380
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 441
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 442 QKESTLHLVLRLRGG 456
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKEST HLVLRLRGG
Sbjct: 61 IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 134 DYNIQKESTLHLVLRLR 150
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 210 DYNIQKESTLHLVLRLR 226
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 286 DYNIQKESTLHLVLRLR 302
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 362 DYNIQKESTLHLVLRLR 378
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 438 DYNIQKESTLHLVLRLR 454
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 134 DYNIQKESTLHLVLRLR 150
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 210 DYNIQKESTLHLVLRLR 226
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 286 DYNIQKESTLHLVLRLR 302
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 362 DYNIQKESTLHLVLRLR 378
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 438 DYNIQKESTLHLVLRLR 454
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 55
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 56 LADYNIQKESTLHLVLRLRGG 76
          L+DYNIQKESTLHLVLRLRGG
Sbjct: 61 LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 131
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 132 LADYNIQKESTLHLVLRLRGG 152
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 207
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 208 LADYNIQKESTLHLVLRLRGG 228
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 283
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 284 LADYNIQKESTLHLVLRLRGG 304
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 359
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 360 LADYNIQKESTLHLVLRLRGG 380
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 435
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 436 LADYNIQKESTLHLVLRLRGG 456
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRL 73
          IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRL 149
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRL 225
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRL 301
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRL 377
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRL 453
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKEST+HLVLRLRGG
Sbjct: 61 IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 1  MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
          MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1  MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 54 RTLADYNIQKESTLHLVLRLRGG 76
          RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 77  MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 129
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 130 RTLADYNIQKESTLHLVLRLRGG 152
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 153 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 205
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 206 RTLADYNIQKESTLHLVLRLRGG 228
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 229 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 281
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 282 RTLADYNIQKESTLHLVLRLRGG 304
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 305 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 357
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 358 RTLADYNIQKESTLHLVLRLRGG 380
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 381 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 433
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 434 RTLADYNIQKESTLHLVLRLRGG 456
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLV 70
          IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLV 146
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLV 222
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLV 298
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLV 374
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLV 450
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLR 72
          IQKESTLHLVLR
Sbjct: 61 IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLR 148
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLR 224
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLR 300
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLR 376
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLR 452
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 74/77 (96%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVKTLTGKTITLEVE +D+ID +KAKIQ+KEGIPPDQQRLIFAGKQLE+G+TL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDY 62
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 74/77 (96%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVKTLTGKTITLEVE +D+ID +KAKIQ+KEGIPPDQQRLIFAGKQLE+G+TL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDY 62
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 74/77 (96%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
            MQIFVKTLTGKTITLEVE +D+ID +KAKIQ+KEGIPPDQQRLIFAGKQLE+G+TL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDY 62
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 74/77 (96%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
            MQIFVKTLTGKTITLEVE +D+ID +KAKIQ+KEGIPPDQQRLIFAGKQLE+G+TL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDY 62
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 74/77 (96%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
            MQIFVKTLTGKTITLEVE +D+ID +KAKIQ+KEGIPPDQQRLIFAGKQLE+G+TL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDY 62
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          +QKEST+HLVLRLRGG
Sbjct: 61 LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 1  MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
          MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1  MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 53 GRTLADYNIQKESTLHLVLRLRGG 76
          GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 77  MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 129 GRTLADYNIQKESTLHLVLRLRGG 152
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 153 MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 205 GRTLADYNIQKESTLHLVLRLRGG 228
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 229 MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 281 GRTLADYNIQKESTLHLVLRLRGG 304
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 305 MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 356
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 357 GRTLADYNIQKESTLHLVLRLRGG 380
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 381 MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 432
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 433 GRTLADYNIQKESTLHLVLRLRGG 456
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 52
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 53 GRTLADYNIQKESTLHLVLRLRGG 76
          GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 128
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 129 GRTLADYNIQKESTLHLVLRLRGG 152
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 204
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 205 GRTLADYNIQKESTLHLVLRLRGG 228
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 280
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 281 GRTLADYNIQKESTLHLVLRLRGG 304
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 356
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 357 GRTLADYNIQKESTLHLVLRLRGG 380
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 432
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 433 GRTLADYNIQKESTLHLVLRLRGG 456
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLR 150
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 211 YNIQKESTLHLVLRLR 226
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 287 YNIQKESTLHLVLRLR 302
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 363 YNIQKESTLHLVLRLR 378
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 439 YNIQKESTLHLVLRLR 454
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 135 YNIQKESTLHLVLRLRGGM 153
           YN+QKESTLHLVLRLRGG+
Sbjct: 64  YNVQKESTLHLVLRLRGGV 82

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 211 YNIQKESTLHLVLRLRGGM 229
           YN+QKESTLHLVLRLRGG+
Sbjct: 64  YNVQKESTLHLVLRLRGGV 82

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 287 YNIQKESTLHLVLRLRGGM 305
           YN+QKESTLHLVLRLRGG+
Sbjct: 64  YNVQKESTLHLVLRLRGGV 82

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 363 YNIQKESTLHLVLRLRGGM 381
           YN+QKESTLHLVLRLRGG+
Sbjct: 64  YNVQKESTLHLVLRLRGGV 82

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 69/78 (88%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 439 YNIQKESTLHLVLRLRGG 456
           YN+QKESTLHLVLRLRGG
Sbjct: 64  YNVQKESTLHLVLRLRGG 81

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTL 67
          IQK STL
Sbjct: 64 IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTL 143
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTL 219
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 289 IQKESTL 295
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 365 IQKESTL 371
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 441 IQKESTL 447
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 287 YNIQKESTLHLVLRLRGG 304
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 363 YNIQKESTLHLVLRLRGG 380
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 439 YNIQKESTLHLVLRLRGG 456
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKEST 66
          I   S 
Sbjct: 64 IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKEST 142
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKEST 218
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 289 IQKEST 294
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 365 IQKEST 370
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 441 IQKEST 446
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 127
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 203
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 279
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 355
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 431
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          I+  S LHLVL LRGG
Sbjct: 61 IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 287 YNIQKESTLHLVLRLRGG 304
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 363 YNIQKESTLHLVLRLRGG 380
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 439 YNIQKESTLHLVLRLRGG 456
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 287 YNIQKESTLHLVLRLRGG 304
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 363 YNIQKESTLHLVLRLRGG 380
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 439 YNIQKESTLHLVLRLRGG 456
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 287 YNIQKESTLHLVLRLRGG 304
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 363 YNIQKESTLHLVLRLRGG 380
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 439 YNIQKESTLHLVLRLRGG 456
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 287 YNIQKESTLHLVLRLRGG 304
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 363 YNIQKESTLHLVLRLRGG 380
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 439 YNIQKESTLHLVLRLRGG 456
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 62 ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 289 IQKESTLHLVLRLRGG 304
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 365 IQKESTLHLVLRLRGG 380
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 289 IQKESTLHLVLRLRGG 304
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 365 IQKESTLHLVLRLRGG 380
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 67 ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 289 IQKESTLHLVLRLRGG 304
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 365 IQKESTLHLVLRLRGG 380
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 289 IQKESTLHLVLRLRGG 304
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 365 IQKESTLHLVLRLRGG 380
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 287 YNIQKESTLHLVLRLRGG 304
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 363 YNIQKESTLHLVLRLRGG 380
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 439 YNIQKESTLHLVLRLRGG 456
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza B Virus, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza B Virus, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza B Virus, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza B Virus, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza Virus B, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKXDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza Virus B, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKXDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza Virus B, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKXDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza Virus B, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKXDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral Factor Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral Factor Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral Factor Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral Factor Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To Interferon- Stimulated Gene 15 (Isg15) Length = 156

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227
             L F GK LED   L +Y ++  ST+ + LRLRG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156

>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To Interferon- Stimulated Gene 15 (Isg15) Length = 156

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 303
             L F GK LED   L +Y ++  ST+ + LRLRG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156

>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To Interferon- Stimulated Gene 15 (Isg15) Length = 156

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379
             L F GK LED   L +Y ++  ST+ + LRLRG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156

>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To Interferon- Stimulated Gene 15 (Isg15) Length = 156

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455
             L F GK LED   L +Y ++  ST+ + LRLRG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 136 NIQKESTLHLVLR 148
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 212 NIQKESTLHLVLR 224
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 288 NIQKESTLHLVLR 300
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 364 NIQKESTLHLVLR 376
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 440 NIQKESTLHLVLR 452
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced Ubiquitin Cross Reactive Protein Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226
             L F GK LED   L +Y ++  ST+ + LRLR
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155

>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced Ubiquitin Cross Reactive Protein Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 302
             L F GK LED   L +Y ++  ST+ + LRLR
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155

>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced Ubiquitin Cross Reactive Protein Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 378
             L F GK LED   L +Y ++  ST+ + LRLR
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155

>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced Ubiquitin Cross Reactive Protein Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454
             L F GK LED   L +Y ++  ST+ + LRLR
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 135 YNIQKESTLHLVLR 148
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 211 YNIQKESTLHLVLR 224
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 287 YNIQKESTLHLVLR 300
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 363 YNIQKESTLHLVLR 376
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 439 YNIQKESTLHLVLR 452
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 135 YNIQKESTLHLVLR 148
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 211 YNIQKESTLHLVLR 224
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 287 YNIQKESTLHLVLR 300
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 363 YNIQKESTLHLVLR 376
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 439 YNIQKESTLHLVLR 452
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 136 NIQKESTLHLVLRLR 150
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 212 NIQKESTLHLVLRLR 226
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 288 NIQKESTLHLVLRLR 302
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 364 NIQKESTLHLVLRLR 378
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 440 NIQKESTLHLVLRLR 454
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 61 IQKESTLHLVLRLRGGMQ 78
          ++  ST+ + LRLRGG++
Sbjct: 65 LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 137 IQKESTLHLVLRLRGGMQ 154
           ++  ST+ + LRLRGG++
Sbjct: 65  LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 213 IQKESTLHLVLRLRGGMQ 230
           ++  ST+ + LRLRGG++
Sbjct: 65  LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 289 IQKESTLHLVLRLRGGMQ 306
           ++  ST+ + LRLRGG++
Sbjct: 65  LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 365 IQKESTLHLVLRLRGGMQ 382
           ++  ST+ + LRLRGG++
Sbjct: 65  LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 441 IQKESTLHLVLRLRGG 456
           ++  ST+ + LRLRGG
Sbjct: 65  LKPLSTVFMNLRLRGG 80

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 75  GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 133 ADYNIQKESTLHLVLR 148
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 151 GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 209 ADYNIQKESTLHLVLR 224
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 227 GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 285 ADYNIQKESTLHLVLR 300
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 303 GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 361 ADYNIQKESTLHLVLR 376
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 379 GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 437 ADYNIQKESTLHLVLR 452
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 134 DYNIQKESTLHLVLRLRGG 152
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 210 DYNIQKESTLHLVLRLRGG 228
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 286 DYNIQKESTLHLVLRLRGG 304
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 362 DYNIQKESTLHLVLRLRGG 380
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 438 DYNIQKESTLHLVLRLRGG 456
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 61 IQKESTLHLVLRLR 74
          ++++S +H+V R R
Sbjct: 61 LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 137 IQKESTLHLVLRLR 150
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 213 IQKESTLHLVLRLR 226
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 289 IQKESTLHLVLRLR 302
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 365 IQKESTLHLVLRLR 378
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 441 IQKESTLHLVLRLR 454
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 61 IQKESTLHLVLRLRG 75
          ++  ST+ + LRLRG
Sbjct: 65 LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 137 IQKESTLHLVLRLRG 151
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 213 IQKESTLHLVLRLRG 227
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 289 IQKESTLHLVLRLRG 303
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 365 IQKESTLHLVLRLRG 379
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 441 IQKESTLHLVLRLRG 455
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 56  LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 114
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 115 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 190
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 208 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 266
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 267 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 284 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 342
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 343 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 360 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 418
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 419 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 136 NIQKESTLHL 145
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 212 NIQKESTLHL 221
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 288 NIQKESTLHL 297
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 364 NIQKESTLHL 373
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 440 NIQKESTLHL 449
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 76  GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 134 DYNIQKESTLHLVLRLRGG 152
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 152 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 210 DYNIQKESTLHLVLRLRGG 228
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 228 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 286 DYNIQKESTLHLVLRLRGG 304
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 304 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 362 DYNIQKESTLHLVLRLRGG 380
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 380 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 438 DYNIQKESTLHLVLRLRGG 456
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 68 HLVLRLRG 75
          HL L+ RG
Sbjct: 79 HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 144 HLVLRLRG 151
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 220 HLVLRLRG 227
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 296 HLVLRLRG 303
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 371
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 372 HLVLRLRG 379
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 447
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 448 HLVLRLRG 455
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 136 NIQKESTLHLVLRLRGG 152
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 212 NIQKESTLHLVLRLRGG 228
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 288 NIQKESTLHLVLRLRGG 304
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 364 NIQKESTLHLVLRLRGG 380
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 440 NIQKESTLHLVLRLRGG 456
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 8   LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 68  HLVLRLRGG 76
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 144 HLVLRLRGG 152
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 220 HLVLRLRGG 228
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 296 HLVLRLRGG 304
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 371
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 372 HLVLRLRGG 380
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 447
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 448 HLVLRLRGG 456
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6  LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 66 VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 137 IQKESTLHLVLR 148
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 213 IQKESTLHLVLR 224
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 289 IQKESTLHLVLR 300
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 365 IQKESTLHLVLR 376
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 441 IQKESTLHLVLR 452
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 61 IQKESTLHLVL 71
          I K+  + +++
Sbjct: 84 IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 137 IQKESTLHLVL 147
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 213 IQKESTLHLVL 223
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 289 IQKESTLHLVL 299
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 365 IQKESTLHLVL 375
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 441 IQKESTLHLVL 451
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 136 NIQKESTLHLVLR 148
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 212 NIQKESTLHLVLR 224
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 288 NIQKESTLHLVLR 300
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 364 NIQKESTLHLVLR 376
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 440 NIQKESTLHLVLR 452
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
          + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 91  LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 58 DYNI 61
          +Y I
Sbjct: 64 EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 134 DYNI 137
           +Y I
Sbjct: 64  EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 210 DYNI 213
           +Y I
Sbjct: 64  EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 286 DYNI 289
           +Y I
Sbjct: 64  EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 362 DYNI 365
           +Y I
Sbjct: 64  EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 437
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 438 DYNI 441
           +Y I
Sbjct: 64  EYKI 67

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DYNI 61
          +Y I
Sbjct: 61 EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 134 DYNI 137
           +Y I
Sbjct: 61  EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 210 DYNI 213
           +Y I
Sbjct: 61  EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 286 DYNI 289
           +Y I
Sbjct: 61  EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 362 DYNI 365
           +Y I
Sbjct: 61  EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 437
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 438 DYNI 441
           +Y I
Sbjct: 61  EYKI 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	458
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-78
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-78
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-78
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-78
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	7e-78
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-77
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-77
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-77
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	2e-76
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	8e-76
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-77
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-77
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-77
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-77
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-77
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-66
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-66
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-66
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-66
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-65
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	3e-42
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	8e-66
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	8e-66
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	8e-66
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	7e-63
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	9e-62
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-55
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-55
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-55
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-55
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	1e-41
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-52
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-52
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-52
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-52
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-52
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	2e-40
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-51
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-51
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-51
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-51
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-49
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	4e-46
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	3e-47
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	9e-49
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	9e-49
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	9e-49
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	9e-49
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	9e-49
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	4e-44
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-48
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-48
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-48
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-48
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-48
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-45
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-47
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-47
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-47
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-47
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-47
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-44
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	1e-43
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-46
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-46
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-46
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-46
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	1e-45
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-45
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-45
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	8e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	8e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	8e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	8e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	8e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	4e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	5e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	1e-43
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	2e-43
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	2e-43
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	2e-43
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	2e-43
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	2e-43
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	2e-42
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-43
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-43
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-43
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-43
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-43
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	1e-41
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-43
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-43
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-43
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-43
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-43
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	2e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	7e-42
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	3e-40
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	9e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	9e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	9e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	9e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	9e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	6e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	3e-40
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-39
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-39
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-39
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-39
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-39
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	2e-38
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-39
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-39
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-39
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-39
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-39
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-37
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	6e-39
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	6e-34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	6e-34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	6e-34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	6e-34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	8e-34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	6e-33
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-28
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-28
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-28
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-28
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-28
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	4e-28
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	6e-23
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	6e-23
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	6e-23
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	6e-23
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	3e-22
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	3e-22
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-20
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-20
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-20
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-20
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-20
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	5e-19
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-14
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-14
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-14
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-14
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-14
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	3e-14
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-11
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	9e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	9e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	9e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	9e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	9e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	6e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	4e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	7e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	7e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	7e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	7e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	7e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  241 bits (616), Expect = 1e-78
 Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 122 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 181
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAK
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  241 bits (616), Expect = 1e-78
 Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 198 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 257
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAK
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  241 bits (616), Expect = 1e-78
 Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 274 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 333
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAK
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 334 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  241 bits (616), Expect = 1e-78
 Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 350 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 409
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAK
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 410 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  239 bits (610), Expect = 7e-78
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  237 bits (605), Expect = 3e-77
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 134 DYNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 230
             L F GK LED   L +Y ++  ST+ + LRLRGG +
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGR 159

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  237 bits (605), Expect = 3e-77
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 210 DYNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 306
             L F GK LED   L +Y ++  ST+ + LRLRGG +
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGR 159

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  237 bits (605), Expect = 3e-77
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 286 DYNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 382
             L F GK LED   L +Y ++  ST+ + LRLRGG +
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGR 159

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  234 bits (599), Expect = 2e-76
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 58
             + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA 
Sbjct: 3   WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS 62

Query: 59  YNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
             +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D  
Sbjct: 63  QGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF 122

Query: 118 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154
            L F GK LED   L +Y ++  ST+ + LRLRGG +
Sbjct: 123 WLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGR 159

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  233 bits (595), Expect = 8e-76
 Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 3/156 (1%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 362 DYNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 7e-77
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 7e-77
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 7e-77
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 7e-77
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 7e-77
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  209 bits (533), Expect = 2e-66
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 13/167 (7%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 118 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG-MQIFV 157
            L F  K L D   G +L+D     +  E+       L+ G +Q F+
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFL 164

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  209 bits (533), Expect = 2e-66
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 13/167 (7%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 193
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 194 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG-MQIFV 233
            L F  K L D   G +L+D     +  E+       L+ G +Q F+
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFL 164

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  209 bits (533), Expect = 2e-66
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 13/167 (7%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 269
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 270 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG-MQIFV 309
            L F  K L D   G +L+D     +  E+       L+ G +Q F+
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFL 164

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  209 bits (533), Expect = 2e-66
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 13/167 (7%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 345
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 346 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG-MQIFV 385
            L F  K L D   G +L+D     +  E+       L+ G +Q F+
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFL 164

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  207 bits (527), Expect = 2e-65
 Identities = 90/161 (55%), Positives = 108/161 (67%), Gaps = 12/161 (7%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 421
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 422 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG 456
            L F  K L D   G +L+D     +  E+       L+ G
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSG 158

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  146 bits (370), Expect = 3e-42
 Identities = 74/78 (94%), Positives = 76/78 (97%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGGEF 458
           IQKESTLHLVLRLRGG  
Sbjct: 61  IQKESTLHLVLRLRGGGG 78

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  208 bits (531), Expect = 8e-66
 Identities = 93/185 (50%), Positives = 103/185 (55%), Gaps = 12/185 (6%)

Query: 50  LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 109
           L+    L D  I K     L                GK+I       D   N + K+  K
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVA--SKGNLADVAPGKSIG-----GDIFSNREGKLPGK 67

Query: 110 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 169
            G    +  + +        R L   +      L        G QIFVKTLTGKTITLEV
Sbjct: 68  SGRTWREADINYTSGFRNSDRILYSSD-----WLIYKTTDHYGGQIFVKTLTGKTITLEV 122

Query: 170 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 229
           E SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 123 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182

Query: 230 QIFVK 234
           Q F K
Sbjct: 183 QTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  208 bits (531), Expect = 8e-66
 Identities = 93/185 (50%), Positives = 103/185 (55%), Gaps = 12/185 (6%)

Query: 126 LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 185
           L+    L D  I K     L                GK+I       D   N + K+  K
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVA--SKGNLADVAPGKSIG-----GDIFSNREGKLPGK 67

Query: 186 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 245
            G    +  + +        R L   +      L        G QIFVKTLTGKTITLEV
Sbjct: 68  SGRTWREADINYTSGFRNSDRILYSSD-----WLIYKTTDHYGGQIFVKTLTGKTITLEV 122

Query: 246 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305
           E SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 123 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182

Query: 306 QIFVK 310
           Q F K
Sbjct: 183 QTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  208 bits (531), Expect = 8e-66
 Identities = 93/185 (50%), Positives = 103/185 (55%), Gaps = 12/185 (6%)

Query: 202 LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 261
           L+    L D  I K     L                GK+I       D   N + K+  K
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVA--SKGNLADVAPGKSIG-----GDIFSNREGKLPGK 67

Query: 262 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 321
            G    +  + +        R L   +      L        G QIFVKTLTGKTITLEV
Sbjct: 68  SGRTWREADINYTSGFRNSDRILYSSD-----WLIYKTTDHYGGQIFVKTLTGKTITLEV 122

Query: 322 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 381
           E SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 123 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182

Query: 382 QIFVK 386
           Q F K
Sbjct: 183 QTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  200 bits (511), Expect = 7e-63
 Identities = 87/158 (55%), Positives = 96/158 (60%), Gaps = 10/158 (6%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
                    GK+I       D   N + K+  K G    +  + +        R L   +
Sbjct: 40  KGNLADVAPGKSIG-----GDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSD 94

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
                 L        G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 95  -----WLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 149

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 158
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG Q F K
Sbjct: 150 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  198 bits (504), Expect = 9e-62
 Identities = 90/179 (50%), Positives = 100/179 (55%), Gaps = 12/179 (6%)

Query: 278 LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 337
           L+    L D  I K     L                GK+I       D   N + K+  K
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVA--SKGNLADVAPGKSIG-----GDIFSNREGKLPGK 67

Query: 338 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 397
            G    +  + +        R L   +      L        G QIFVKTLTGKTITLEV
Sbjct: 68  SGRTWREADINYTSGFRNSDRILYSSD-----WLIYKTTDHYGGQIFVKTLTGKTITLEV 122

Query: 398 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           E SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  185 bits (470), Expect = 3e-55
 Identities = 86/208 (41%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 30  IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLVLRLRGG----MQIFVKTL 84
               +G    +  + F G  L +   L   + +++   L   L           +  K  
Sbjct: 100 FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQK 159

Query: 85  TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTL 143
            G  +  ++  +    +V+     ++  P     ++      L     L+    +K   +
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 144 -----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
                     + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279

Query: 199 GKQLEDGRTLADYNIQKESTLHLVLRLR 226
           GKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 280 GKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  185 bits (470), Expect = 3e-55
 Identities = 86/208 (41%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLVLRLRGG----MQIFVKTL 160
               +G    +  + F G  L +   L   + +++   L   L           +  K  
Sbjct: 100 FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQK 159

Query: 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTL 219
            G  +  ++  +    +V+     ++  P     ++      L     L+    +K   +
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 220 -----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
                     + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279

Query: 275 GKQLEDGRTLADYNIQKESTLHLVLRLR 302
           GKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 280 GKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  185 bits (470), Expect = 3e-55
 Identities = 86/208 (41%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLVLRLRGG----MQIFVKTL 236
               +G    +  + F G  L +   L   + +++   L   L           +  K  
Sbjct: 100 FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQK 159

Query: 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTL 295
            G  +  ++  +    +V+     ++  P     ++      L     L+    +K   +
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 296 -----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350
                     + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279

Query: 351 GKQLEDGRTLADYNIQKESTLHLVLRLR 378
           GKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 280 GKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  185 bits (470), Expect = 3e-55
 Identities = 86/208 (41%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLVLRLRGG----MQIFVKTL 312
               +G    +  + F G  L +   L   + +++   L   L           +  K  
Sbjct: 100 FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQK 159

Query: 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTL 371
            G  +  ++  +    +V+     ++  P     ++      L     L+    +K   +
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 372 -----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426
                     + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279

Query: 427 GKQLEDGRTLADYNIQKESTLHLVLRLR 454
           GKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 280 GKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  149 bits (377), Expect = 1e-41
 Identities = 79/156 (50%), Positives = 96/156 (61%), Gaps = 6/156 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 59
             +  K   G  +  ++  +    +V+     ++  P     ++      L     L+  
Sbjct: 152 YIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKD 211

Query: 60  NIQKESTL-----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
             +K   +          + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 212 PNEKRDHMVLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 271

Query: 115 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150
           DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 272 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 3e-52
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 48  KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 106
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 107 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 3e-52
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 124 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 182
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 183 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 3e-52
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 200 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 258
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 259 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 3e-52
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 276 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 334
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 335 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 3e-52
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 352 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 410
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 411 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  139 bits (352), Expect = 2e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 86

Query: 60 NIQKESTLHLVLR 72
          +IQ   ++HLV  
Sbjct: 87 HIQDGHSVHLVKS 99

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  168 bits (428), Expect = 2e-51
 Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 3/106 (2%)

Query: 71  LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 130
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 131 TLADYNIQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 173
           TL+DYNIQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  168 bits (428), Expect = 2e-51
 Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 3/106 (2%)

Query: 147 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 206
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 207 TLADYNIQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 249
           TL+DYNIQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  168 bits (428), Expect = 2e-51
 Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 3/106 (2%)

Query: 223 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 282
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 283 TLADYNIQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 325
           TL+DYNIQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  168 bits (428), Expect = 2e-51
 Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 3/106 (2%)

Query: 299 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 358
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 359 TLADYNIQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 401
           TL+DYNIQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  163 bits (414), Expect = 2e-49
 Identities = 75/100 (75%), Positives = 82/100 (82%), Gaps = 3/100 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+DYN
Sbjct: 10  FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYN 69

Query: 61  IQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 97
           IQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 70  IQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  154 bits (392), Expect = 4e-46
 Identities = 71/82 (86%), Positives = 75/82 (91%)

Query: 375 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 434
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 435 TLADYNIQKESTLHLVLRLRGG 456
           TL+DYNIQ+ESTLHLVLRLRGG
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGG 85

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 4e-50
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1  MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 61 IQKESTLHLVLRLRGGMQ 78
            +      V    G   
Sbjct: 61 YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 4e-50
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 137 IQKESTLHLVLRLRGGMQ 154
             +      V    G   
Sbjct: 61  YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 4e-50
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 213 IQKESTLHLVLRLRGGMQ 230
             +      V    G   
Sbjct: 61  YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 4e-50
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 289 IQKESTLHLVLRLRGGMQ 306
             +      V    G   
Sbjct: 61  YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 4e-50
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 365 IQKESTLHLVLRLRGGMQ 382
             +      V    G   
Sbjct: 61  YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  164 bits (417), Expect = 2e-49
 Identities = 5/76 (6%), Positives = 19/76 (25%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 441 IQKESTLHLVLRLRGG 456
             +      V    G 
Sbjct: 61  YVQVRQPIFVAHTAGR 76

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  162 bits (413), Expect = 1e-49
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGK 87
          I   S LHLVL LRGG  +  K     
Sbjct: 61 ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  162 bits (413), Expect = 1e-49
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGK 163
           I   S LHLVL LRGG  +  K     
Sbjct: 61  ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  162 bits (413), Expect = 1e-49
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGK 239
           I   S LHLVL LRGG  +  K     
Sbjct: 61  ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  162 bits (413), Expect = 1e-49
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGK 315
           I   S LHLVL LRGG  +  K     
Sbjct: 61  ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  162 bits (413), Expect = 1e-49
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGK 391
           I   S LHLVL LRGG  +  K     
Sbjct: 61  ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  157 bits (398), Expect = 3e-47
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 9e-49
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 94
          IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61 IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 9e-49
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 170
           IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 9e-49
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 246
           IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 9e-49
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 322
           IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 9e-49
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 398
           IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  149 bits (377), Expect = 4e-44
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 2e-48
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 68  HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 127
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 128 DGRTLADYNIQKESTLHLVLRLRGG 152
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 2e-48
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 144 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 203
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 204 DGRTLADYNIQKESTLHLVLRLRGG 228
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 2e-48
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 220 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 279
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 280 DGRTLADYNIQKESTLHLVLRLRGG 304
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 2e-48
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 296 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 355
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 356 DGRTLADYNIQKESTLHLVLRLRGG 380
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 2e-48
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 372 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 431
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 432 DGRTLADYNIQKESTLHLVLRLRGG 456
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  152 bits (385), Expect = 2e-45
 Identities = 66/76 (86%), Positives = 74/76 (97%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 69

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 70 IQKESTLHLVLRLRGG 85

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 289 IQKESTLHLVLRLRGG 304
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 365 IQKESTLHLVLRLRGG 380
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 4e-47
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 43  LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 102
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 103 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 4e-47
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 119 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 178
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 4e-47
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 254
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 255 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 4e-47
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 271 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 330
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 331 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 4e-47
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 347 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 406
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 407 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  149 bits (377), Expect = 4e-44
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 8e-47
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 61 IQKESTLHLVLRLRGGMQIFVK 82
          ++  ST+ + LRLRGG++    
Sbjct: 65 LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 8e-47
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 137 IQKESTLHLVLRLRGGMQIFVK 158
           ++  ST+ + LRLRGG++    
Sbjct: 65  LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 8e-47
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 213 IQKESTLHLVLRLRGGMQIFVK 234
           ++  ST+ + LRLRGG++    
Sbjct: 65  LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 8e-47
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 289 IQKESTLHLVLRLRGGMQIFVK 310
           ++  ST+ + LRLRGG++    
Sbjct: 65  LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 8e-47
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 365 IQKESTLHLVLRLRGGMQIFVK 386
           ++  ST+ + LRLRGG++    
Sbjct: 65  LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  147 bits (373), Expect = 1e-43
 Identities = 28/76 (36%), Positives = 44/76 (57%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 441 IQKESTLHLVLRLRGG 456
           ++  ST+ + LRLRGG
Sbjct: 65  LKPLSTVFMNLRLRGG 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  154 bits (392), Expect = 2e-46
 Identities = 73/80 (91%), Positives = 76/80 (95%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 136 NIQKESTLHLVLRLRGGMQI 155
           NIQKESTLHLVLRLRG   +
Sbjct: 61  NIQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  154 bits (392), Expect = 2e-46
 Identities = 73/80 (91%), Positives = 76/80 (95%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 212 NIQKESTLHLVLRLRGGMQI 231
           NIQKESTLHLVLRLRG   +
Sbjct: 61  NIQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  154 bits (392), Expect = 2e-46
 Identities = 73/80 (91%), Positives = 76/80 (95%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 288 NIQKESTLHLVLRLRGGMQI 307
           NIQKESTLHLVLRLRG   +
Sbjct: 61  NIQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  154 bits (392), Expect = 2e-46
 Identities = 73/80 (91%), Positives = 76/80 (95%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 364 NIQKESTLHLVLRLRGGMQI 383
           NIQKESTLHLVLRLRG   +
Sbjct: 61  NIQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  152 bits (387), Expect = 1e-45
 Identities = 72/79 (91%), Positives = 75/79 (94%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 2  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61

Query: 61 IQKESTLHLVLRLRGGMQI 79
          IQKESTLHLVLRLRG   +
Sbjct: 62 IQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  152 bits (386), Expect = 2e-45
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRG 
Sbjct: 61  NIQKESTLHLVLRLRGY 77

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 2e-46
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 134 DYNIQKESTLHLVLRLRGG 152
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 2e-46
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 210 DYNIQKESTLHLVLRLRGG 228
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 2e-46
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 286 DYNIQKESTLHLVLRLRGG 304
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 2e-46
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 362 DYNIQKESTLHLVLRLRGG 380
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 2e-46
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 438 DYNIQKESTLHLVLRLRGG 456
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  152 bits (385), Expect = 2e-45
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 72

Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVLRLRGG
Sbjct: 73 ILGGSVLHLVLRLRGG 88

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  153 bits (388), Expect = 7e-46
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  153 bits (388), Expect = 7e-46
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  153 bits (388), Expect = 7e-46
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 287 YNIQKESTLHLVLRLRGG 304
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  153 bits (388), Expect = 7e-46
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 363 YNIQKESTLHLVLRLRGG 380
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  153 bits (388), Expect = 7e-46
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 439 YNIQKESTLHLVLRLRGG 456
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  153 bits (388), Expect = 7e-46
 Identities = 70/76 (92%), Positives = 73/76 (96%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 61 IQKESTLHLVLRLRGG 76
          IQK STL L+LRLRGG
Sbjct: 64 IQKWSTLFLLLRLRGG 79

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 8e-46
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 61  IQKESTLHLVLRLRGGMQIFVK 82
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 8e-46
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 137 IQKESTLHLVLRLRGGMQIFVK 158
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 8e-46
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 213 IQKESTLHLVLRLRGGMQIFVK 234
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 8e-46
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 289 IQKESTLHLVLRLRGGMQIFVK 310
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 8e-46
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 365 IQKESTLHLVLRLRGGMQIFVK 386
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  151 bits (384), Expect = 4e-45
 Identities = 21/76 (27%), Positives = 40/76 (52%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 441 IQKESTLHLVLRLRGG 456
           I K+  + +++     
Sbjct: 84  IPKDYVVQVIVSQPVQ 99

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 61 IQKESTLHLVLRLRGG 76
          I   S L+L+L+LRGG
Sbjct: 64 IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 137 IQKESTLHLVLRLRGG 152
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 213 IQKESTLHLVLRLRGG 228
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 289 IQKESTLHLVLRLRGG 304
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 365 IQKESTLHLVLRLRGG 380
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 441 IQKESTLHLVLRLRGG 456
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (384), Expect = 3e-45
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 135 YNIQKESTLHLVLRLRGGMQIFVKTLTG 162
           YN+  +  +HLV R      +     +G
Sbjct: 64  YNVGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (384), Expect = 3e-45
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 211 YNIQKESTLHLVLRLRGGMQIFVKTLTG 238
           YN+  +  +HLV R      +     +G
Sbjct: 64  YNVGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (384), Expect = 3e-45
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 287 YNIQKESTLHLVLRLRGGMQIFVKTLTG 314
           YN+  +  +HLV R      +     +G
Sbjct: 64  YNVGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (384), Expect = 3e-45
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 363 YNIQKESTLHLVLRLRGGMQIFVKTLTG 390
           YN+  +  +HLV R      +     +G
Sbjct: 64  YNVGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  150 bits (382), Expect = 5e-45
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTG 86
          +  +  +HLV R      +     +G
Sbjct: 66 VGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  147 bits (373), Expect = 1e-43
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 439 YNIQKESTLHLVLRLRGG 456
           YN+  +  +HLV R    
Sbjct: 64  YNVGGK-VIHLVERAPPQ 80

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (380), Expect = 8e-45
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 135 YNIQKESTLHLVLRLRGG 152
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (380), Expect = 8e-45
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 211 YNIQKESTLHLVLRLRGG 228
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (380), Expect = 8e-45
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 287 YNIQKESTLHLVLRLRGG 304
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (380), Expect = 8e-45
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 363 YNIQKESTLHLVLRLRGG 380
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (380), Expect = 8e-45
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 439 YNIQKESTLHLVLRLRGG 456
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  149 bits (377), Expect = 2e-44
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y 
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 61 IQKESTLHLVLRLRGG 76
          IQ   TL L  +   G
Sbjct: 68 IQDSDTLILSKKKGSG 83

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 61 IQKESTLHLVLRLRG 75
          ++++S +H+V R R 
Sbjct: 61 LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 137 IQKESTLHLVLRLRG 151
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 213 IQKESTLHLVLRLRG 227
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 289 IQKESTLHLVLRLRG 303
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 365 IQKESTLHLVLRLRG 379
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 441 IQKESTLHLVLRLRG 455
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 2e-43
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLR 148
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 2e-43
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLR 224
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 2e-43
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 273 FAGKQLEDGRTLADYNIQKESTLHLVLR 300
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 2e-43
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 349 FAGKQLEDGRTLADYNIQKESTLHLVLR 376
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 2e-43
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 425 FAGKQLEDGRTLADYNIQKESTLHLVLR 452
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  143 bits (364), Expect = 2e-42
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 77

Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 78 VGGK-VIHLVER 88

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 2e-43
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 65  STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 125 QLEDGRTLADYNIQKESTLHLVLRLRGG 152
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 2e-43
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 141 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 200
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 201 QLEDGRTLADYNIQKESTLHLVLRLRGG 228
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 2e-43
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 217 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 276
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 277 QLEDGRTLADYNIQKESTLHLVLRLRGG 304
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 2e-43
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 293 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 352
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 353 QLEDGRTLADYNIQKESTLHLVLRLRGG 380
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 2e-43
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 369 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 429 QLEDGRTLADYNIQKESTLHLVLRLRGG 456
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL    
Sbjct: 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 77

Query: 61 IQKESTLHLVLRLRGG 76
          ++  +TL +  R+ GG
Sbjct: 78 VEALTTLEVAGRMLGG 93

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 5e-43
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 134 DYNIQKESTLHLVLRL 149
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 5e-43
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 210 DYNIQKESTLHLVLRL 225
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 5e-43
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 286 DYNIQKESTLHLVLRL 301
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 5e-43
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 362 DYNIQKESTLHLVLRL 377
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 5e-43
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 438 DYNIQKESTLHLVLRL 453
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  143 bits (364), Expect = 2e-42
 Identities = 29/73 (39%), Positives = 46/73 (63%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY+
Sbjct: 8  MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 67

Query: 61 IQKESTLHLVLRL 73
          I   S L+LV++ 
Sbjct: 68 IGPNSKLNLVVKP 80

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 3e-42
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 76  GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 134 DYNIQKESTLHLVLRLRGG 152
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 3e-42
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 152 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 210 DYNIQKESTLHLVLRLRGG 228
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 3e-42
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 228 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 286 DYNIQKESTLHLVLRLRGG 304
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 3e-42
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 304 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 362 DYNIQKESTLHLVLRLRGG 380
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 3e-42
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 380 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 438 DYNIQKESTLHLVLRLRGG 456
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  142 bits (360), Expect = 7e-42
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 8  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 67

Query: 59 YNIQKESTLHLVLRLRGG 76
          Y++     + L++R   G
Sbjct: 68 YDVGLNDIIQLLVRPDSG 85

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 133 ADYNIQKESTLHLVLRLRG 151
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 209 ADYNIQKESTLHLVLRLRG 227
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 285 ADYNIQKESTLHLVLRLRG 303
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 361 ADYNIQKESTLHLVLRLRG 379
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 437 ADYNIQKESTLHLVLRLRG 455
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  141 bits (358), Expect = 1e-41
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 61 IQKESTLHLVLRLRG 75
          ++  ST+ + LRLRG
Sbjct: 65 LKPLSTVFMNLRLRG 79

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 2e-41
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1  MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKT 88
               T +L L+L GG +   K      
Sbjct: 60 ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 2e-41
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKT 164
                T +L L+L GG +   K      
Sbjct: 60  ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 2e-41
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKT 240
                T +L L+L GG +   K      
Sbjct: 60  ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 2e-41
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKT 316
                T +L L+L GG +   K      
Sbjct: 60  ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 2e-41
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKT 392
                T +L L+L GG +   K      
Sbjct: 60  ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  141 bits (357), Expect = 3e-40
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 441 IQKESTLHLVLRLRGGE 457
                T +L L+L GG+
Sbjct: 60  ----VTYYLSLKLLGGK 72

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 58 DYNIQKESTLHLVLRLRGG 76
          +Y I +++ + +++     
Sbjct: 61 EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 134 DYNIQKESTLHLVLRLRGG 152
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 210 DYNIQKESTLHLVLRLRGG 228
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 286 DYNIQKESTLHLVLRLRGG 304
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 362 DYNIQKESTLHLVLRLRGG 380
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 437
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 438 DYNIQKESTLHLVLRLRGG 456
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 9e-41
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKT 88
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 9e-41
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKT 164
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 9e-41
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 9e-41
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKT 316
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 9e-41
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKT 392
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  138 bits (349), Expect = 6e-40
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 441 IQKESTLHLVLRLRGG 456
           ++   T+HLV++ +  
Sbjct: 77  VRDGLTVHLVIKRQHR 92

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  138 bits (351), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3  MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 60 NIQKESTLHLVLR 72
          +IQ   ++HLV  
Sbjct: 63 HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  138 bits (351), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 77  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 136 NIQKESTLHLVLR 148
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  138 bits (351), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 212 NIQKESTLHLVLR 224
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  138 bits (351), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 288 NIQKESTLHLVLR 300
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  138 bits (351), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 364 NIQKESTLHLVLR 376
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  138 bits (351), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 440 NIQKESTLHLVLR 452
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 59
          M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 60 NIQKESTLHLVL 71
           I   S + L +
Sbjct: 71 QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 135
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 136 NIQKESTLHLVL 147
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 211
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 212 NIQKESTLHLVL 223
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 287
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 288 NIQKESTLHLVL 299
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 363
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 364 NIQKESTLHLVL 375
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 439
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 440 NIQKESTLHLVL 451
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (353), Expect = 2e-40
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 57  ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 116
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 117 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (353), Expect = 2e-40
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 133 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (353), Expect = 2e-40
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 209 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (353), Expect = 2e-40
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (353), Expect = 2e-40
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (351), Expect = 3e-40
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 2   QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
                 L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+
Sbjct: 37  DKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNM 96

Query: 62  QKESTLHLVLRLRGG 76
              + +HL L+ R G
Sbjct: 97  ASGAVIHLALKERSG 111

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 1e-39
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 75  GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 133 ADYNIQKESTLHLVLRL 149
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 1e-39
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 151 GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 209 ADYNIQKESTLHLVLRL 225
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 1e-39
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 227 GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 285 ADYNIQKESTLHLVLRL 301
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 1e-39
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 303 GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 361 ADYNIQKESTLHLVLRL 377
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 1e-39
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 379 GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 437 ADYNIQKESTLHLVLRL 453
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  133 bits (336), Expect = 2e-38
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 1  MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 3  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 62

Query: 59 YNIQKESTLHLVLRL 73
          Y ++   T+ L++R 
Sbjct: 63 YEVRLNDTIQLLVRQ 77

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  137 bits (347), Expect = 1e-39
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 121 FAGKQLEDGRTL 132
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  137 bits (347), Expect = 1e-39
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 197 FAGKQLEDGRTL 208
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  137 bits (347), Expect = 1e-39
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 273 FAGKQLEDGRTL 284
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  137 bits (347), Expect = 1e-39
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 349 FAGKQLEDGRTL 360
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  137 bits (347), Expect = 1e-39
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 425 FAGKQLEDGRTL 436
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  132 bits (334), Expect = 1e-37
 Identities = 73/75 (97%), Positives = 75/75 (100%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRG 455
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (343), Expect = 3e-39
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 58  DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 116
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 117 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (343), Expect = 3e-39
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 134 DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (343), Expect = 3e-39
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 210 DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (343), Expect = 3e-39
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 286 DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (343), Expect = 3e-39
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 362 DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (341), Expect = 6e-39
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M++ VKT   K     V  + ++   K +I  +     DQ  LIFAGK L+D  TL+ + 
Sbjct: 26 MKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 84

Query: 61 IQKESTLHLVLR 72
          I    T+HLV++
Sbjct: 85 IHDGLTVHLVIK 96

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 61 IQKESTLHLVLRLR 74
          ++   T+HLV++ +
Sbjct: 82 VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 137 IQKESTLHLVLRLR 150
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 213 IQKESTLHLVLRLR 226
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 289 IQKESTLHLVLRLR 302
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 365 IQKESTLHLVLRLR 378
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 441 IQKESTLHLVLRLR 454
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 58 DYNIQKESTLHLVL-RLRGG 76
          DY I +++ + +++ + + G
Sbjct: 66 DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 134 DYNIQKESTLHLVL-RLRGG 152
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 210 DYNIQKESTLHLVL-RLRGG 228
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 286 DYNIQKESTLHLVL-RLRGG 304
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 362 DYNIQKESTLHLVL-RLRGG 380
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 437
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 438 DYNIQKESTLHLVL-RLRGG 456
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 61  IQKESTLHLVLRLRGG 76
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 137 IQKESTLHLVLRLRGG 152
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 213 IQKESTLHLVLRLRGG 228
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 289 IQKESTLHLVLRLRGG 304
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 365 IQKESTLHLVLRLRGG 380
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 441 IQKESTLHLVLRLRGG 456
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18 IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 61 IQKESTLHLVLRLRGG 76
          I   ST+H+V+R   G
Sbjct: 77 ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 137 IQKESTLHLVLRLRGG 152
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 213 IQKESTLHLVLRLRGG 228
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 289 IQKESTLHLVLRLRGG 304
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 365 IQKESTLHLVLRLRGG 380
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 441 IQKESTLHLVLRLRGG 456
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2  VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 61 IQKESTLHLVLR 72
          ++    +  ++ 
Sbjct: 62 LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 137 IQKESTLHLVLR 148
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 213 IQKESTLHLVLR 224
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 289 IQKESTLHLVLR 300
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 365 IQKESTLHLVLR 376
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 441 IQKESTLHLVLR 452
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (306), Expect = 6e-34
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 63  KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 123 GKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQ 154
           G +L +D R L +Y I + S + + L+     +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (306), Expect = 6e-34
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 199 GKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQ 230
           G +L +D R L +Y I + S + + L+     +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (306), Expect = 6e-34
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 275 GKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQ 306
           G +L +D R L +Y I + S + + L+     +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (306), Expect = 6e-34
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 351 GKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQ 382
           G +L +D R L +Y I + S + + L+     +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (305), Expect = 8e-34
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 367 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 427 GKQL-EDGRTLADYNIQKESTLHLVLR 452
           G +L +D R L +Y I + S + + L+
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLK 87

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  119 bits (300), Expect = 4e-33
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++G +L +D R L +Y
Sbjct: 16 IHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY 74

Query: 60 NIQKESTLHLVLRLRGGMQ 78
           I + S + + L+     +
Sbjct: 75 GITEFSEIVVFLKSINRAK 93

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 4e-33
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 1   MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 59  YNIQKESTLHLVLRLRGGMQ 78
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 4e-33
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 77  MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 135 YNIQKESTLHLVLRLRGGMQ 154
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 4e-33
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 153 MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 211 YNIQKESTLHLVLRLRGGMQ 230
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 4e-33
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 229 MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 287 YNIQKESTLHLVLRLRGGMQ 306
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 4e-33
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 305 MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 363 YNIQKESTLHLVLRLRGGMQ 382
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  119 bits (301), Expect = 6e-33
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 381 MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 439 YNIQKESTLHLVLRLRGG 456
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-28
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 131
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 132 LADYNIQKESTLHLVLRLRGGMQ 154
           + DY I +++ + +++      Q
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQ 88

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-28
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 207
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 208 LADYNIQKESTLHLVLRLRGGMQ 230
           + DY I +++ + +++      Q
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQ 88

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-28
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 283
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 284 LADYNIQKESTLHLVLRLRGGMQ 306
           + DY I +++ + +++      Q
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQ 88

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-28
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 359
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 360 LADYNIQKESTLHLVLRLRGGMQ 382
           + DY I +++ + +++      Q
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQ 88

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-28
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 435
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 436 LADYNIQKESTLHLVLRLRGG 456
           + DY I +++ + +++     
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKA 86

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  113 bits (284), Expect = 4e-28
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 8  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 67

Query: 58 DYNIQKESTLHLVLRLRGGMQ 78
          DY I +++ + +++      Q
Sbjct: 68 DYRIDEKNFVVVMVTKTKAGQ 88

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13 IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 61 IQKESTLHLV 70
          +   + L L+
Sbjct: 72 VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 137 IQKESTLHLV 146
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 213 IQKESTLHLV 222
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 289 IQKESTLHLV 298
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 365 IQKESTLHLV 374
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 441 IQKESTLHLV 450
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 92.0 bits (228), Expect = 6e-23
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 76  GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 130
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 131 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 162
           +L  Y ++    + L+ +   G++   +T +G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 92.0 bits (228), Expect = 6e-23
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 152 GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 206
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 207 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 238
           +L  Y ++    + L+ +   G++   +T +G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 92.0 bits (228), Expect = 6e-23
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 228 GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 282
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 283 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 314
           +L  Y ++    + L+ +   G++   +T +G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 92.0 bits (228), Expect = 6e-23
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 304 GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 358
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 359 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 390
           +L  Y ++    + L+ +   G++   +T +G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 90.4 bits (224), Expect = 3e-22
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 1  MQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 55
          M I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  +
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86
          L  Y ++    + L+ +   G++   +T +G
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 90.0 bits (223), Expect = 3e-22
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 380 GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 434
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 435 TLADYNIQKESTLHLVLRLRGG 456
           +L  Y ++    + L+ +   G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVG 88

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 132
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 133 ADYNIQKESTLHLVL 147
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 208
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 209 ADYNIQKESTLHLVL 223
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 284
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 285 ADYNIQKESTLHLVL 299
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 360
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 361 ADYNIQKESTLHLVL 375
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 436
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 437 ADYNIQKESTLHLVL 451
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 80.9 bits (199), Expect = 5e-19
 Identities = 13/72 (18%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADY 59
          M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L   
Sbjct: 9  MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSL 68

Query: 60 NIQKESTLHLVL 71
          ++ K ++L+++ 
Sbjct: 69 HLPKNNSLYVLT 80

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27 VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 61 IQKE-STLHLVL 71
          +++   + +L L
Sbjct: 87 VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 137 IQKE-STLHLVL 147
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 213 IQKE-STLHLVL 223
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 289 IQKE-STLHLVL 299
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 365 IQKE-STLHLVL 375
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 441 IQKE-STLHLVL 451
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1  MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 60 NI-------QKESTLHLVLRLRGGMQ 78
                   Q  +T+ L  R     +
Sbjct: 61 GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 77  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 136 NI-------QKESTLHLVLRLRGGMQ 154
                    Q  +T+ L  R     +
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 212 NI-------QKESTLHLVLRLRGGMQ 230
                    Q  +T+ L  R     +
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 288 NI-------QKESTLHLVLRLRGGMQ 306
                    Q  +T+ L  R     +
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 364 NI-------QKESTLHLVLRLRGGMQ 382
                    Q  +T+ L  R     +
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.1 bits (166), Expect = 3e-14
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 440 NI-------QKESTLHLVLRLRG 455
                    Q  +T+ L  R   
Sbjct: 61  GFTSQTARPQAPATVGLAFRADD 83

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 75  GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 130
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 131 TLADYNIQKES--TLHLVLRLRGG 152
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 151 GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 206
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 207 TLADYNIQKES--TLHLVLRLRGG 228
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 227 GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 282
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 283 TLADYNIQKES--TLHLVLRLRGG 304
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 303 GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 358
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 359 TLADYNIQKES--TLHLVLRLRGG 380
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 379 GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 434
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 435 TLADYNIQKES--TLHLVLRLRGG 456
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 1  MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 56
          + + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D + L
Sbjct: 8  VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67

Query: 57 ADYNIQKES--TLHLVLRLRGG 76
           D   ++E    LHLV  ++ G
Sbjct: 68 RDLLPKQEKRHVLHLVCNVKSG 89

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 61 IQKESTLHLV 70
          +   + + +V
Sbjct: 76 VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 137 IQKESTLHLV 146
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 213 IQKESTLHLV 222
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 289 IQKESTLHLV 298
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 365 IQKESTLHLV 374
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 441 IQKESTLHLV 450
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 52
          + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 53 GRTLADYNIQKEST--LHLVLR 72
            TL    +    T  +HLV R
Sbjct: 78 NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 129 GRTLADYNIQKEST--LHLVLR 148
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 205 GRTLADYNIQKEST--LHLVLR 224
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 280
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 281 GRTLADYNIQKEST--LHLVLR 300
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 356
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 357 GRTLADYNIQKEST--LHLVLR 376
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 432
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 433 GRTLADYNIQKEST--LHLVLR 452
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 61 IQKESTLHL 69
          +  ++ L L
Sbjct: 82 VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 137 IQKESTLHL 145
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 213 IQKESTLHL 221
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 289 IQKESTLHL 297
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 365 IQKESTLHL 373
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 441 IQKESTLHL 449
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8  YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 61 IQKESTLHLV 70
          ++   T+ ++
Sbjct: 67 MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 137 IQKESTLHLV 146
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 213 IQKESTLHLV 222
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 289 IQKESTLHLV 298
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 365 IQKESTLHLV 374
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 441 IQKESTLHLV 450
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 75  GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 122
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 123 GKQLEDGRTLADYNIQKESTLHLV 146
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 151 GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 198
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 199 GKQLEDGRTLADYNIQKESTLHLV 222
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 227 GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 274
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 275 GKQLEDGRTLADYNIQKESTLHLV 298
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 303 GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 350
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 351 GKQLEDGRTLADYNIQKESTLHLV 374
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 379 GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 426
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 427 GKQLEDGRTLADYNIQKESTLHLV 450
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 1  MQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGK 48
          M        T       +E    +  +++++K K++   G   D  R+          G+
Sbjct: 3  MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGE 62

Query: 49 QLEDGRTLADYNIQKESTLHLV 70
            +  ++L D  ++    +H V
Sbjct: 63 LTDGAKSLKDLGVRDGYRIHAV 84

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 52
          + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 53 GRTLADYNIQ--KESTLHLVLR 72
            TL    +   K + +HLV R
Sbjct: 77 NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 129 GRTLADYNIQ--KESTLHLVLR 148
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 205 GRTLADYNIQ--KESTLHLVLR 224
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 280
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 281 GRTLADYNIQ--KESTLHLVLR 300
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 356
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 357 GRTLADYNIQ--KESTLHLVLR 376
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 432
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 433 GRTLADYNIQ--KESTLHLVLR 452
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 1  MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 49
          +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17 VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 50 LEDGRTLADYNIQKESTLHLVLR 72
          L+D +TL  Y IQ  ST+H++ +
Sbjct: 77 LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 77  MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 125
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 126 LEDGRTLADYNIQKESTLHLVLR 148
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 153 MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 201
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 202 LEDGRTLADYNIQKESTLHLVLR 224
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 229 MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 277
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 278 LEDGRTLADYNIQKESTLHLVLR 300
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 305 MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 353
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 354 LEDGRTLADYNIQKESTLHLVLR 376
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 381 MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 429
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 430 LEDGRTLADYNIQKESTLHLVLR 452
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 61 IQKESTLHL 69
          I     L L
Sbjct: 89 IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 137 IQKESTLHL 145
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 213 IQKESTLHL 221
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 289 IQKESTLHL 297
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 365 IQKESTLHL 373
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 441 IQKESTLHL 449
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 133
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 134 DYNIQKESTLHLVLR 148
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 209
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 210 DYNIQKESTLHLVLR 224
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 285
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 286 DYNIQKESTLHLVLR 300
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 361
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 362 DYNIQKESTLHLVLR 376
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 437
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 438 DYNIQKESTLHLVLR 452
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+  
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL 64

Query: 60 NIQKESTLHLVLR 72
          NI     +H    
Sbjct: 65 NITNNCVIHCHRS 77

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 1  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 56
          + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 57 AD--YNIQKESTLHLV 70
           D      +   +HLV
Sbjct: 84 KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 77  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 132
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 133 AD--YNIQKESTLHLV 146
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 153 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 208
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 209 AD--YNIQKESTLHLV 222
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 229 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 284
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 285 AD--YNIQKESTLHLV 298
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 305 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 360
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 361 AD--YNIQKESTLHLV 374
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 381 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 436
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 437 AD--YNIQKESTLHLV 450
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 1  MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 56
          + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8  LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 57 ADYNIQKESTLHLV 70
              ++  + + ++
Sbjct: 67 GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 77  MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 132
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 133 ADYNIQKESTLHLV 146
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 153 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 208
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 209 ADYNIQKESTLHLV 222
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 229 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 284
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 285 ADYNIQKESTLHLV 298
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 305 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 360
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 361 ADYNIQKESTLHLV 374
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 436
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 437 ADYNIQKESTLHLV 450
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 425
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 426 AGKQL-EDGRTLADYNIQKESTLHLVLRLRGGE 457
           AG++L ED + L DY I+    +  + +L    
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQKS 100

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 45
          M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8  MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 46 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 75
          AG++L ED + L DY I+    +  + +L  
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 121
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 122 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 151
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 197
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 198 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 227
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 273
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 274 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 303
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 349
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 350 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 379
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 56
          ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2  RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 57 ADYNIQKESTL 67
           D  IQ    L
Sbjct: 62 GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 132
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 133 ADYNIQKESTL 143
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 208
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 209 ADYNIQKESTL 219
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 284
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 285 ADYNIQKESTL 295
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 360
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 361 ADYNIQKESTL 371
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 436
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 437 ADYNIQKESTL 447
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 58
            L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22 ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 59 YNIQKESTLHLV 70
          ++      LH++
Sbjct: 82 FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 134
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 135 YNIQKESTLHLV 146
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 210
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 211 YNIQKESTLHLV 222
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 234 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 286
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 287 YNIQKESTLHLV 298
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 362
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 363 YNIQKESTLHLV 374
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 438
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 439 YNIQKESTLHLV 450
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 61  IQKESTLHLVLRLRGGM 77
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 137 IQKESTLHLVLRLRGGM 153
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 213 IQKESTLHLVLRLRGGM 229
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 289 IQKESTLHLVLRLRGGM 305
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 365 IQKESTLHLVLRLRGGM 381
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 12/76 (15%), Positives = 33/76 (43%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 441 IQKESTLHLVLRLRGG 456
           ++ +  +  ++   GG
Sbjct: 87  MEDDDVIDAMVEQTGG 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 64  ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 116
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 117 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 148
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 140 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 192
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 193 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 224
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 216 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 268
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 269 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 300
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 292 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 344
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 345 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 376
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 368 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 420
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 421 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 452
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 13/67 (19%)

Query: 19  SSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQ------KES 65
            + T+  +K  +     ++KE  P    + +LI AGK LE+ +T+ DY           +
Sbjct: 36  DATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVT 95

Query: 66  TLHLVLR 72
           T+H++++
Sbjct: 96  TMHVIIQ 102

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 13/78 (16%), Positives = 34/78 (43%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 441 IQKESTLHLVLRLRGGEF 458
           ++ E T+ +  +  GG +
Sbjct: 66  MEDEDTIDVFQQQTGGVY 83

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6  INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 61 IQKESTLHLVLRLRGGMQI 79
          ++ E T+ +  +  GG+ +
Sbjct: 66 MEDEDTIDVFQQQTGGVYL 84

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 137 IQKESTLHLVLRLRGGMQI 155
           ++ E T+ +  +  GG+ +
Sbjct: 66  MEDEDTIDVFQQQTGGVYL 84

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 213 IQKESTLHLVLRLRGGMQI 231
           ++ E T+ +  +  GG+ +
Sbjct: 66  MEDEDTIDVFQQQTGGVYL 84

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 289 IQKESTLHLVLRLRGGMQI 307
           ++ E T+ +  +  GG+ +
Sbjct: 66  MEDEDTIDVFQQQTGGVYL 84

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 365 IQKESTLHLVLRLRGGMQI 383
           ++ E T+ +  +  GG+ +
Sbjct: 66  MEDEDTIDVFQQQTGGVYL 84

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 66
          GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14 GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 67 L 67
          L
Sbjct: 74 L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 142
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 143 L 143
           L
Sbjct: 74  L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 218
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 219 L 219
           L
Sbjct: 74  L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 294
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 295 L 295
           L
Sbjct: 74  L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 370
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 371 L 371
           L
Sbjct: 74  L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 446
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 447 L 447
           L
Sbjct: 74  L 74

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 75  GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 128
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 129 GRTLADYNIQKESTLHLV 146
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 151 GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 204
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 205 GRTLADYNIQKESTLHLV 222
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 227 GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 280
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 281 GRTLADYNIQKESTLHLV 298
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 303 GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 356
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 357 GRTLADYNIQKESTLHLV 374
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 379 GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 432
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 433 GRTLADYNIQKESTLHLV 450
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLV 70
          S   + ++   +++  G+P   Q+LIF GK L E    L+   IQ    + L+
Sbjct: 30 SEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 61 IQKESTLHLVLRLRGG 76
          +++E  + +     GG
Sbjct: 82 MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 137 IQKESTLHLVLRLRGG 152
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 213 IQKESTLHLVLRLRGG 228
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 289 IQKESTLHLVLRLRGG 304
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 365 IQKESTLHLVLRLRGG 380
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 441 IQKESTLHLVLRLRGG 456
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 20 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 70
          S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28 SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 96  SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 146
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 172 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 222
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 248 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 298
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 324 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 374
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 400 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 450
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.81
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.8
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.78
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.78
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.77
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.76
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.76
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.76
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.75
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.75
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.75
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.75
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.75
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.75
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.74
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.74
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.74
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.74
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.74
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.73
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.73
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.73
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.73
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.73
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.73
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.73
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.73
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.72
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.72
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.72
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.72
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.72
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.72
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.72
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.72
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.71
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.71
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.71
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.71
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.71
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.7
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.7
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.7
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.7
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.7
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.7
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.7
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.7
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.7
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.7
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.69
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.69
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.69
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.69
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.69
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.69
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.69
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.69
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.68
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.68
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.68
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.68
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.68
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.68
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.68
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.68
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.68
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.67
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.49
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.67
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.67
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.67
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.67
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.67
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.67
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.67
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.66
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.66
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.66
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.66
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.66
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.66
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.66
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.66
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.66
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.65
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.65
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.46
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.65
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.65
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.65
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.65
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.65
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.64
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.64
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.64
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.64
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.64
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.64
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.64
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.63
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.62
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.62
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.62
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.62
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.61
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.6
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.6
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.6
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.6
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.6
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.6
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.59
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.59
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.58
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.58
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.58
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.58
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.57
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.57
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.56
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.56
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.55
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.54
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.54
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.54
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.53
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.53
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.52
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.52
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.52
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.52
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.51
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.51
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.51
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.5
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.5
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.5
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.49
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.49
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.48
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.47
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.47
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.46
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.46
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.46
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.45
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.45
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.44
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.43
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.42
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.42
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.41
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.4
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.39
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.39
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.38
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.35
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.34
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.34
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.32
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.32
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.32
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.32
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.31
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.28
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.28
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.28
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.23
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.21
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.21
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.18
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.18
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.14
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.14
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.12
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.12
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.11
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	99.04
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.96
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.92
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.89
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.86
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	98.84
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	98.8
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.75
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.74
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.62
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.57
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.52
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.47
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.37
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.36
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.33
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.3
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	98.29
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.22
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	98.18
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.18
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.11
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.01
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	97.99
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.97
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	97.97
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.86
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.83
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.83
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.75
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.65
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.6
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.55
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.43
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.31
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.95
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	96.89
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.8
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	96.31
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	96.14
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	96.08
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	96.04
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	95.99
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	95.98
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	95.89
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	95.89
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	95.82
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	95.73
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	95.15
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.07
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	94.9
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	94.67
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	94.54
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	94.51
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	93.94
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	93.93
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	93.7
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	93.33
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	92.99
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	92.79
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	92.78
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	91.91
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	91.7
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	91.12
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	90.71
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	90.21
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	89.96
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	89.12
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	88.72
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	88.64
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	87.52
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	87.32
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	87.04
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	86.47
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	86.27
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	85.14
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	84.94
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	84.18
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	83.71
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	81.7
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	81.66
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	80.21
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	80.19

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=1.1e-35  Score=261.90  Aligned_cols=152  Identities=34%  Similarity=0.508  Sum_probs=147.2

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEE-E-eeeeccCCCCccccccccccccceeEe-ecCCe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM   77 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~-~-~g~~L~d~~tl~~y~i~~~sti~l~~~-~~~~~   77 (458)
                      |+|+|++++|++++++|++++||.+||++|+++.|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++|++++ ++++|
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m   82 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL   82 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence            89999999999999999999999999999999999999999999 9 799999999999999999999999999 68999


Q ss_pred             EEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeecc
Q 012714           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (458)
Q Consensus        78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~~  152 (458)
                      +|+||+.+|+.++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++++++
T Consensus        83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG  157 (159)
T 3rt3_B           83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG  157 (159)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988765

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=1e-34  Score=255.80  Aligned_cols=152  Identities=34%  Similarity=0.508  Sum_probs=147.3

Q ss_pred             eeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEE-e-cCeecCCCCCcccccccCCCeEEEEEe-ecCce
Q 012714          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM  381 (458)
Q Consensus       305 ~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~-~-~g~~L~~~~~l~~y~I~~~~~l~l~~~-~~~~~  381 (458)
                      |+|+|++.+|++++++|.+++||+++|++|+...|+|+.+|+|. | .|+.|+|+.+|++|||.+++++|++.+ .+++|
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m   82 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL   82 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence            78999999999999999999999999999999999999999999 9 799999999999999999999999999 59999


Q ss_pred             eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       382 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      +|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||+++|.+||
T Consensus        83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG  157 (159)
T 3rt3_B           83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG  157 (159)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=5.8e-35  Score=260.56  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=145.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCCeEEE
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~   80 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++|.++
T Consensus        21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~  100 (172)
T 3u30_A           21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF  100 (172)
T ss_dssp             EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeecc
Q 012714           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (458)
Q Consensus        81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~~  152 (458)
                      ||+.+|+.+++++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++++++
T Consensus       101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A          101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred             eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999887653

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=7.3e-34  Score=253.41  Aligned_cols=155  Identities=94%  Similarity=1.292  Sum_probs=147.0

Q ss_pred             cCceeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCCeEEEEEeecCce
Q 012714          302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  381 (458)
Q Consensus       302 ~~~~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~~l~l~~~~~~~~  381 (458)
                      ...|+|+|++++|++++++|.+++||.+||++|+...|+|++.|+|.|+|+.|+|+.+|++|||.++++|+++.+.++.|
T Consensus        18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~   97 (172)
T 3u30_A           18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM   97 (172)
T ss_dssp             -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       382 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      .|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.+||
T Consensus        98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A           98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred             cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=4.1e-33  Score=243.72  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=148.1

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCCeEEE
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~   80 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+..++|+|+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~   80 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF   80 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeecc
Q 012714           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (458)
Q Consensus        81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~~  152 (458)
                      ||+++|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++||++.+++++
T Consensus        81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999887653

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=3.2e-32  Score=238.02  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=148.4

Q ss_pred             eeEEEEccCCceEEEeecCCCcHHHHHHhhhcccCCCCCCeeEEecCeecCCCCCcccccccCCCeEEEEEeecCceeEE
Q 012714          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  384 (458)
Q Consensus       305 ~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~~q~L~~~g~~L~~~~~l~~y~I~~~~~l~l~~~~~~~~~i~  384 (458)
                      |+|+|++.+|+++++.|.+++||+++|++|+...|+|++.|+|.|.|+.|+|+.+|++|||.+++++|++.+.++.|+|+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~   80 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF   80 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       385 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |++.+|+.+.++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++||++.|.+||
T Consensus        81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.81  E-value=1e-19  Score=140.85  Aligned_cols=79  Identities=24%  Similarity=0.386  Sum_probs=71.3

Q ss_pred             EEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          373 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       373 l~~~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      |+...++.|+|+||++.|+++.++|+|++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||+..
T Consensus        14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~   92 (93)
T 3plu_A           14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   92 (93)
T ss_dssp             ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence            6777889999999999999999999999999999999999999999999999999999999999999999999999853

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.80  E-value=5.3e-20  Score=142.43  Aligned_cols=70  Identities=23%  Similarity=0.433  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccccccccccee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~   70 (458)
                      |+|||+++.|+++++++.|+|||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|++++++||.
T Consensus        22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999985

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.78  E-value=4.5e-19  Score=139.43  Aligned_cols=88  Identities=28%  Similarity=0.519  Sum_probs=72.2

Q ss_pred             cccCCCeEEEEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCC
Q 012714          364 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK  443 (458)
Q Consensus       364 ~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~  443 (458)
                      |+.+++++++..+.+..|+|+||+.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +
T Consensus         1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~   79 (88)
T 4eew_A            1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G   79 (88)
T ss_dssp             --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred             CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence            466788999999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             CCEEEEEEE
Q 012714          444 ESTLHLVLR  452 (458)
Q Consensus       444 ~~~i~~~~~  452 (458)
                      |++||++.|
T Consensus        80 g~~i~lv~R   88 (88)
T 4eew_A           80 GKVIHLVER   88 (88)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999999875

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.78  E-value=8.9e-19  Score=134.82  Aligned_cols=78  Identities=35%  Similarity=0.561  Sum_probs=75.1

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      +++|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.+|
T Consensus         2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred             CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            467999999999999999999999999999999999999999999999999999999999999999999999999876

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.77  E-value=6.6e-19  Score=135.55  Aligned_cols=75  Identities=36%  Similarity=0.595  Sum_probs=72.8

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus         5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred             EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999998764

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.76  E-value=1e-19  Score=149.77  Aligned_cols=104  Identities=73%  Similarity=0.983  Sum_probs=98.6

Q ss_pred             ecceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCCe
Q 012714          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  229 (458)
Q Consensus       150 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~  229 (458)
                      .+.++|+|+..+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|..++++|.
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~   86 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS   86 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEE---ccCCceEEEeecccchHHH
Q 012714          230 QIFVK---TLTGKTITLEVESSDTIDN  253 (458)
Q Consensus       230 ~I~V~---~~~g~~i~~~v~~~dtV~~  253 (458)
                      +++++   +..|++++++|++++||.+
T Consensus        87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           87 MGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             eeeccccccccCceEEEEeccccccCC
Confidence            99988   5679999999999999864

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.76  E-value=1.3e-18  Score=136.60  Aligned_cols=77  Identities=56%  Similarity=0.936  Sum_probs=73.0

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      |+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|.+||.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~   77 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG   77 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999984

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.3e-19  Score=149.11  Aligned_cols=104  Identities=73%  Similarity=0.983  Sum_probs=97.9

Q ss_pred             cCCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeecce
Q 012714           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (458)
Q Consensus        74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~  153 (458)
                      .+..+|+||+++|+.+++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.++++++
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~   86 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS   86 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEE---eccCceEeeecCCCCcHHH
Q 012714          154 QIFVK---TLTGKTITLEVESSDTIDN  177 (458)
Q Consensus       154 ~i~v~---~~~g~~~~~~v~~~~tV~~  177 (458)
                      .++++   ...|+++++++.+++||.+
T Consensus        87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           87 MGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             eeeccccccccCceEEEEeccccccCC
Confidence            99988   5578999999999998864

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.75  E-value=2.3e-18  Score=132.45  Aligned_cols=77  Identities=18%  Similarity=0.425  Sum_probs=74.6

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      .|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|+|++|++||++++.+||
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999997

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.75  E-value=7.8e-19  Score=138.87  Aligned_cols=70  Identities=23%  Similarity=0.328  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccccccccccee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~   70 (458)
                      |+|||+++.|++++++|.++|||.+||++|++++|+|+++|+|+|+|+.|+|+.||++|+|.+++++||+
T Consensus        29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999986

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.75  E-value=3e-18  Score=134.72  Aligned_cols=87  Identities=29%  Similarity=0.523  Sum_probs=71.8

Q ss_pred             cccccccceeEeecCCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccc
Q 012714           61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE  140 (458)
Q Consensus        61 i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~  140 (458)
                      +.+++++++..+.+..|+|+||+.+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +|
T Consensus         2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g   80 (88)
T 4eew_A            2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG   80 (88)
T ss_dssp             -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred             CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence            45678899998888999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             cceeEEEE
Q 012714          141 STLHLVLR  148 (458)
Q Consensus       141 s~i~l~~~  148 (458)
                      ++|||+.+
T Consensus        81 ~~i~lv~R   88 (88)
T 4eew_A           81 KVIHLVER   88 (88)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEEEC
Confidence            99999864

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.75  E-value=1.6e-18  Score=136.17  Aligned_cols=77  Identities=56%  Similarity=0.924  Sum_probs=73.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCCe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM   77 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~   77 (458)
                      |+|+|++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~   77 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG   77 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988774

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.1e-18  Score=135.75  Aligned_cols=73  Identities=22%  Similarity=0.429  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCcEEEEEee--cCccHHHHHHHh-hcccCCCCCceEEEEeeeeccCCCCcccccc-ccccccceeEee
Q 012714            1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~--~~dtv~~~K~~i-~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i-~~~sti~l~~~~   73 (458)
                      |+|||++++|++++++|+  ++|||.+||++| ++++|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++..++
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence            899999999999999877  999999999999 9999999999999999999999999999999 799999998764

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.75  E-value=3.8e-18  Score=134.11  Aligned_cols=79  Identities=57%  Similarity=0.963  Sum_probs=76.6

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      ..+|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.+||
T Consensus        10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG   88 (88)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            3569999999999999999999999999999999999999999999999999999999999999999999999999998

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.74  E-value=4.3e-18  Score=136.14  Aligned_cols=80  Identities=18%  Similarity=0.390  Sum_probs=76.8

Q ss_pred             ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      .+..|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|.|++||++|+|++|++||++++.+||
T Consensus        18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence            35569999999999999999999999999999999999999999999999999999999999999999999999999998

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=8.6e-18  Score=131.78  Aligned_cols=81  Identities=33%  Similarity=0.514  Sum_probs=78.0

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      +..|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++||++++.+||.
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~   84 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP   84 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C
Q 012714          458 F  458 (458)
Q Consensus       458 ~  458 (458)
                      +
T Consensus        85 ~   85 (87)
T 1wh3_A           85 S   85 (87)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=5.3e-18  Score=135.93  Aligned_cols=79  Identities=94%  Similarity=1.267  Sum_probs=75.7

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      ...|+|+||+.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|++|+|++|++||+++|.+||
T Consensus        20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG   98 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   98 (98)
T ss_dssp             --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            4569999999999999999999999999999999999999999999999999999999999999999999999999998

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.74  E-value=9.2e-18  Score=127.98  Aligned_cols=76  Identities=57%  Similarity=0.952  Sum_probs=72.7

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++.+||
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999987

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.74  E-value=2.3e-18  Score=133.69  Aligned_cols=72  Identities=33%  Similarity=0.489  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeee-ccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~-L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |+|||++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+. |+|+++|++|+|.++++++++++
T Consensus        11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A           11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred             eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence            8999999999999999999999999999999999999999999999999 99999999999999999999875

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.73  E-value=3.1e-18  Score=138.55  Aligned_cols=75  Identities=29%  Similarity=0.437  Sum_probs=71.8

Q ss_pred             CeEEEEcCCCc-EEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccccc-------ccccceeEe
Q 012714            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~-------~sti~l~~~   72 (458)
                      |.||++...++ |++++++++|||.+||++|+.++|+|+++|+|+|+|++|+|++||++|+|.+       ++++||+++
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            89999999888 8999999999999999999999999999999999999999999999999999       999999998


Q ss_pred             ecC
Q 012714           73 LRG   75 (458)
Q Consensus        73 ~~~   75 (458)
                      ..+
T Consensus        81 ~~~   83 (118)
T 4ajy_B           81 ADD   83 (118)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            644

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.73  E-value=5.2e-18  Score=136.10  Aligned_cols=92  Identities=82%  Similarity=1.095  Sum_probs=75.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCCeEEE
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~   80 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+.+++.+++
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~   80 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN   80 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEE
Q 012714           81 VKTLTGKTITLE   92 (458)
Q Consensus        81 vk~~~g~~~~l~   92 (458)
                      .++.+|+.-.++
T Consensus        81 ~~~v~~~~~~~~   92 (98)
T 1yx5_B           81 SSSVDKLAAALE   92 (98)
T ss_dssp             ------------
T ss_pred             cccCCCchhhhh
Confidence            999888764443

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.73  E-value=1.2e-17  Score=131.79  Aligned_cols=78  Identities=32%  Similarity=0.549  Sum_probs=74.1

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      +..|+|+||+.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +|++||++++.+++
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~   80 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ   80 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence            5679999999999999999999999999999999999999999999999999999999999999 89999999997765

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.73  E-value=1.7e-17  Score=126.43  Aligned_cols=76  Identities=95%  Similarity=1.320  Sum_probs=74.4

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++++|++||++++.+||
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999998

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=1.1e-17  Score=131.28  Aligned_cols=80  Identities=84%  Similarity=1.236  Sum_probs=70.4

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCCC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF  458 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~~  458 (458)
                      ..|+|+|++.+|+.+.++|++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++++.+||.+
T Consensus         8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~   87 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL   87 (88)
T ss_dssp             --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred             cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999863

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=1.1e-17  Score=130.62  Aligned_cols=79  Identities=77%  Similarity=1.115  Sum_probs=73.1

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      ..|+|+|++.+|+.+.++|++++||.+||++|+++.++|+++|+|+|+|+.|+|+.+|++|+|+++++||+++|.+||.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~   80 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG   80 (85)
T ss_dssp             --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999999998884

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.73  E-value=8.5e-18  Score=131.97  Aligned_cols=79  Identities=35%  Similarity=0.571  Sum_probs=72.4

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      .+|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+.+||.
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~   81 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL   81 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence            4699999999999999999999999999999999999999999999999999999999999999999999999998884

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.73  E-value=3.8e-18  Score=138.83  Aligned_cols=73  Identities=29%  Similarity=0.439  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCc-EEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccc-------cccccceeEe
Q 012714            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~-------~~sti~l~~~   72 (458)
                      |++||+...|+ +++++|++++||.+||++|++++|||+++|+|+|+|++|+|++||++|+|.       ++|++||+++
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            89999999987 599999999999999999999999999999999999999999999999999       7999999988


Q ss_pred             e
Q 012714           73 L   73 (458)
Q Consensus        73 ~   73 (458)
                      .
T Consensus        81 ~   81 (118)
T 2fnj_B           81 A   81 (118)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.72  E-value=4.5e-18  Score=130.82  Aligned_cols=75  Identities=17%  Similarity=0.425  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|++|+++|+|.+++++|+++++++
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G   78 (79)
T 2uyz_B            4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   78 (79)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999988765

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=2.8e-17  Score=129.41  Aligned_cols=80  Identities=36%  Similarity=0.622  Sum_probs=76.3

Q ss_pred             cCceeEEEEcCCC-cEEEE-EecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          378 RGGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       378 ~~~~~i~vk~~~g-~~~~~-~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      +..|+|+|++.+| +.+.+ +|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++.+|
T Consensus         5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g   84 (89)
T 1wy8_A            5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS   84 (89)
T ss_dssp             SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence            4579999999999 69999 599999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 012714          456 GE  457 (458)
Q Consensus       456 g~  457 (458)
                      |+
T Consensus        85 G~   86 (89)
T 1wy8_A           85 GP   86 (89)
T ss_dssp             SS
T ss_pred             CC
Confidence            85

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.72  E-value=1.6e-17  Score=132.03  Aligned_cols=78  Identities=19%  Similarity=0.386  Sum_probs=71.3

Q ss_pred             ecCceeEEEEcCCCcEEEE--EecCCCcHHHHHHHH-HhhcCCCCCceEEEEcCeecCCCCCccccCC-CCCCEEEEEEE
Q 012714          377 LRGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR  452 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~~~~~--~v~~~~tV~~lK~~i-~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i-~~~~~i~~~~~  452 (458)
                      .+..|+|+||+++|+.|++  +|++++||++||++| ++..|+|+++|||+|+|+.|+|+.+|++|+| ++|++|+++++
T Consensus        16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs   95 (98)
T 4a20_A           16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK   95 (98)
T ss_dssp             --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred             CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence            3567999999999998777  566999999999999 8888999999999999999999999999999 99999999998


Q ss_pred             ec
Q 012714          453 LR  454 (458)
Q Consensus       453 ~~  454 (458)
                      ++
T Consensus        96 kp   97 (98)
T 4a20_A           96 PN   97 (98)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=2.2e-17  Score=128.81  Aligned_cols=79  Identities=89%  Similarity=1.199  Sum_probs=75.4

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      .+|+|+|++.+|+.+.++|++++||.+||++|+++.++|+++|+|+|+|+.|+|+.+|++|+|+++++||+++|.+||.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~   80 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG   80 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence            3699999999999999999999999999999999999999999999999999999999999999999999999999884

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.72  E-value=2.1e-17  Score=131.05  Aligned_cols=80  Identities=26%  Similarity=0.411  Sum_probs=76.1

Q ss_pred             ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC-CCccccCCCCCCEEEEEEEecC
Q 012714          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~-~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      .+..|+|+||+.+| .+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+ .+|++|+|++|++|+++++.+|
T Consensus        12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g   90 (94)
T 2kan_A           12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN   90 (94)
T ss_dssp             SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred             CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence            45679999999988 889999999999999999999999999999999999999999 9999999999999999999998


Q ss_pred             CC
Q 012714          456 GE  457 (458)
Q Consensus       456 g~  457 (458)
                      |.
T Consensus        91 g~   92 (94)
T 2kan_A           91 RA   92 (94)
T ss_dssp             SC
T ss_pred             CC
Confidence            84

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.72  E-value=2.3e-17  Score=131.83  Aligned_cols=78  Identities=94%  Similarity=1.271  Sum_probs=73.9

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      .|+|+|++.+|+.+.++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++||++++.+||.
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~   78 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA   78 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence            389999999999999999999999999999999999999999999999999999999999999999999999999884

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.72  E-value=2.5e-17  Score=130.24  Aligned_cols=77  Identities=91%  Similarity=1.263  Sum_probs=73.8

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      +..|+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.|
T Consensus        15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999998864

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.72  E-value=3.9e-17  Score=127.44  Aligned_cols=80  Identities=28%  Similarity=0.485  Sum_probs=72.0

Q ss_pred             ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhh---cCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~---~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      ++..|+|+|++.+|+.+.++|++++||.+||++|+++   .|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++.++
T Consensus         2 ~~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            2 IPMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             --CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred             CCceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence            3578999999999999999999999999999999998   7899999999999999999999999999999999999887


Q ss_pred             cCC
Q 012714          454 RGG  456 (458)
Q Consensus       454 ~~g  456 (458)
                      ...
T Consensus        82 ~~~   84 (85)
T 2wyq_A           82 TKA   84 (85)
T ss_dssp             ---
T ss_pred             CCC
Confidence            654

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.71  E-value=1.3e-17  Score=131.81  Aligned_cols=72  Identities=22%  Similarity=0.303  Sum_probs=69.7

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      .|+|+||++.|+.+.++|+|++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|+|++|++|||..
T Consensus        28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence            499999999999999999999999999999999999999999999999999999999999999999999864

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.71  E-value=2.3e-17  Score=128.01  Aligned_cols=74  Identities=32%  Similarity=0.472  Sum_probs=71.4

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCee-cCCCCCccccCCCCCCEEEEEEE
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~-L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      ..|+|+|++.+|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+. |+|+.+|++|+|++|++|+++++
T Consensus         9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred             CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence            459999999999999999999999999999999999999999999999999 99999999999999999999875

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.71  E-value=7.9e-18  Score=134.57  Aligned_cols=76  Identities=18%  Similarity=0.448  Sum_probs=73.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|++|+|++||++|+|.++++||++++++++
T Consensus        22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999987653

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.71  E-value=3.9e-17  Score=133.82  Aligned_cols=78  Identities=94%  Similarity=1.272  Sum_probs=75.1

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      ..|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|++|+|++|++||+++|.+||
T Consensus        34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            359999999999999999999999999999999999999999999999999999999999999999999999999997

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.71  E-value=1.6e-17  Score=131.05  Aligned_cols=74  Identities=34%  Similarity=0.585  Sum_probs=71.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+| +++++||+++.+.
T Consensus         6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~   79 (90)
T 4dwf_A            6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP   79 (90)
T ss_dssp             EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999 8999999987654

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.70  E-value=2.5e-17  Score=130.58  Aligned_cols=78  Identities=37%  Similarity=0.629  Sum_probs=72.6

Q ss_pred             ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      .+..|+|+|++  |+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|.+||
T Consensus        16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred             CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            35679999999  8999999999999999999999999999999999999999999999999999999999999999997

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=1.6e-17  Score=127.35  Aligned_cols=73  Identities=36%  Similarity=0.643  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCcEE-EEE-eecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~-~~~-v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|++++|+++ +++ |.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus         3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            8999999999996 999 999999999999999999999999999999999999999999999999999999875

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.70  E-value=2.5e-17  Score=125.57  Aligned_cols=75  Identities=56%  Similarity=0.935  Sum_probs=72.3

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G   75 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG   75 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988765

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=3.6e-17  Score=129.81  Aligned_cols=80  Identities=29%  Similarity=0.484  Sum_probs=74.4

Q ss_pred             cCceeEEEEcCCCc--EEEEEecCCCcHHHHHHHHHhhc--CCCCCceEEEEcCeecCCCCCcccc--CCCCCCEEEEEE
Q 012714          378 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVL  451 (458)
Q Consensus       378 ~~~~~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~--~~~~~~q~Li~~G~~L~d~~tL~~~--~i~~~~~i~~~~  451 (458)
                      +..|+|+||+.+++  .+.++|++++||.+||++|+++.  ++|+++|+|+|+|+.|+|+++|++|  +|+++++||+++
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~   84 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred             CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence            34699999999998  67777889999999999999998  9999999999999999999999999  999999999999


Q ss_pred             EecCCC
Q 012714          452 RLRGGE  457 (458)
Q Consensus       452 ~~~~g~  457 (458)
                      +.+||+
T Consensus        85 ~~~gg~   90 (93)
T 1wgd_A           85 NVKSGP   90 (93)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            998884

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.70  E-value=3.3e-17  Score=134.36  Aligned_cols=93  Identities=80%  Similarity=1.042  Sum_probs=82.7

Q ss_pred             cccCCCeEEEEEee--------cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCC
Q 012714          364 NIQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT  435 (458)
Q Consensus       364 ~I~~~~~l~l~~~~--------~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~t  435 (458)
                      ++.+++++++....        ...|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~t   90 (111)
T 2ojr_A           11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT   90 (111)
T ss_dssp             SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCB
T ss_pred             ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCc
Confidence            34456666665432        2469999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCEEEEEEEecCC
Q 012714          436 LADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       436 L~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |++|+|++|++||+++|.+||
T Consensus        91 L~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           91 LSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             TTTTTCCTTCEEEEEECCCC-
T ss_pred             HHHcCCCCCCEEEEEEeCCCC
Confidence            999999999999999999997

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.70  E-value=1.7e-17  Score=130.43  Aligned_cols=76  Identities=58%  Similarity=0.975  Sum_probs=73.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus        13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG   88 (88)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999987653

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.70  E-value=2e-17  Score=130.74  Aligned_cols=74  Identities=92%  Similarity=1.261  Sum_probs=71.8

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~   74 (458)
                      |+|+|++.+|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++|++++++
T Consensus        18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998764

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.70  E-value=2.7e-17  Score=135.36  Aligned_cols=76  Identities=26%  Similarity=0.458  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCcEE-EEEeecCccHHHHHHHh-----hcccCCCC--CceEEEEeeeeccCCCCccccccccc------cc
Q 012714            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST   66 (458)
Q Consensus         1 ~~i~~~~~~g~~~-~~~v~~~dtv~~~K~~i-----~~~~gip~--~~q~l~~~g~~L~d~~tl~~y~i~~~------st   66 (458)
                      |+|+|++.+|+.+ +++++++|||.+||++|     ++++|+|+  ++|+|+|+|++|+|++||++|+|+.+      ++
T Consensus        17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t   96 (126)
T 1se9_A           17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   96 (126)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence            7899999999999 79999999999999999     78889997  89999999999999999999999988      78


Q ss_pred             cceeEeecCC
Q 012714           67 LHLVLRLRGG   76 (458)
Q Consensus        67 i~l~~~~~~~   76 (458)
                      +||+++++++
T Consensus        97 mhlVlrl~g~  106 (126)
T 1se9_A           97 MHVIIQAPVT  106 (126)
T ss_dssp             EEEEECCCSS
T ss_pred             EEEEeccCCc
Confidence            9999988754

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.70  E-value=2.2e-17  Score=128.40  Aligned_cols=73  Identities=22%  Similarity=0.429  Sum_probs=69.3

Q ss_pred             eeEEEEcCCCcEEEEEec--CCCcHHHHHHHH-HhhcCCCCCceEEEEcCeecCCCCCccccCC-CCCCEEEEEEEe
Q 012714          381 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL  453 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~--~~~tV~~lK~~i-~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i-~~~~~i~~~~~~  453 (458)
                      |+|+||+++|++++++|+  +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++.+.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence            899999999999988866  999999999999 9999999999999999999999999999999 799999998864

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=7.4e-17  Score=123.64  Aligned_cols=75  Identities=36%  Similarity=0.657  Sum_probs=71.2

Q ss_pred             CceeEEEEcCCCcEE-EEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          379 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~-~~~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      +.|+|+|++.+|+.+ .++ |++++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|++|+|++|++||+++|.
T Consensus         1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            369999999999985 999 999999999999999999999999999999999999999999999999999999875

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=3e-17  Score=128.82  Aligned_cols=76  Identities=87%  Similarity=1.271  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++.+|++++++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus        10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG   85 (88)
T 1sif_A           10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   85 (88)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred             eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999887654

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=3.2e-17  Score=131.38  Aligned_cols=76  Identities=97%  Similarity=1.333  Sum_probs=73.5

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++.+|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus        23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG   98 (98)
T 4hcn_B           23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   98 (98)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987753

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=9e-17  Score=127.04  Aligned_cols=73  Identities=23%  Similarity=0.307  Sum_probs=65.6

Q ss_pred             EEEEcCC----CcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          383 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       383 i~vk~~~----g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |.|+..+    ++.+.++|+|++||.+||++|++++|+|+++|+|||+||.|+|++||++|+|++|++| ++++.+|.
T Consensus        18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~   94 (100)
T 1wju_A           18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS   94 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred             EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence            4444555    7789999999999999999999999999999999999999999999999999999999 66666664

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.69  E-value=2.5e-17  Score=145.01  Aligned_cols=125  Identities=66%  Similarity=0.878  Sum_probs=95.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCCeEEE
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~   80 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++||+++++++.+-.
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~   80 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET   80 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887767


Q ss_pred             EEecC-Cc--EEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCC
Q 012714           81 VKTLT-GK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED  128 (458)
Q Consensus        81 vk~~~-g~--~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d  128 (458)
                      |+... |.  .-.+.+.++.++.+-.+.+.=..   .+.-++.|+-+-|.+
T Consensus        81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~---~~~~~~~fsl~yl~~  128 (169)
T 3l0w_B           81 IKFVADGDIGSGSVIIKPFVDMEHPETSIKLEM---DQPVDLTFGAKYLLD  128 (169)
T ss_dssp             EEEEEECSSCEEEEEECCBCCSSCGGGCBEEEE---SSCEEEEEEHHHHHH
T ss_pred             ccccccCcccceeEEEecCCCCCCcccceEEec---CCcceEEEhHHHHHH
Confidence            76542 32  34566666655533222111111   123456666655543

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.69  E-value=8.5e-17  Score=128.98  Aligned_cols=91  Identities=81%  Similarity=1.094  Sum_probs=74.5

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCCeEEE
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  232 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~~I~  232 (458)
                      |+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++..+.++|.+++
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~   80 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN   80 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCceEEE
Q 012714          233 VKTLTGKTITL  243 (458)
Q Consensus       233 V~~~~g~~i~~  243 (458)
                      .++.+|+.-.+
T Consensus        81 ~~~v~~~~~~~   91 (98)
T 1yx5_B           81 SSSVDKLAAAL   91 (98)
T ss_dssp             -----------
T ss_pred             cccCCCchhhh
Confidence            99887754443

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=8.4e-17  Score=129.15  Aligned_cols=80  Identities=33%  Similarity=0.413  Sum_probs=75.9

Q ss_pred             ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      .+..|+|+|++.+|+ +.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+.++|
T Consensus        19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~   97 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR   97 (100)
T ss_dssp             CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence            456799999999986 7999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             C
Q 012714          457 E  457 (458)
Q Consensus       457 ~  457 (458)
                      +
T Consensus        98 p   98 (100)
T 1yqb_A           98 A   98 (100)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.3e-17  Score=134.12  Aligned_cols=93  Identities=31%  Similarity=0.518  Sum_probs=68.3

Q ss_pred             CCCcccccccCCCeEEEEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCc
Q 012714          357 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL  436 (458)
Q Consensus       357 ~~~l~~y~I~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL  436 (458)
                      ..+.++|.|  ++|.++..+....|.|+|++ .|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|
T Consensus         7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL   83 (101)
T 3m63_B            7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV   83 (101)
T ss_dssp             ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred             cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence            356788987  56667766666778999998 899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEEEEEE
Q 012714          437 ADYNIQKESTLHLVLR  452 (458)
Q Consensus       437 ~~~~i~~~~~i~~~~~  452 (458)
                      ++|+|++|++|+++.+
T Consensus        84 ~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           84 ESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTTTCCTTEEEEECCC
T ss_pred             HHCCCCCCCEEEEEeC
Confidence            9999999999998765

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.69  E-value=5.1e-17  Score=132.67  Aligned_cols=75  Identities=24%  Similarity=0.394  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhc------ccCC--CCCceEEEEeeeeccCCCCccccccccc--ccccee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV   70 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~------~~gi--p~~~q~l~~~g~~L~d~~tl~~y~i~~~--sti~l~   70 (458)
                      |+|+|++++|++++++|++++||.+||++|++      ++|+  |+++|+|+|+|++|+|++||++|+|..+  +++||+
T Consensus        17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv   96 (116)
T 1wgh_A           17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            78999999999999999999999999999999      6786  6999999999999999999999999755  789999


Q ss_pred             EeecC
Q 012714           71 LRLRG   75 (458)
Q Consensus        71 ~~~~~   75 (458)
                      +++..
T Consensus        97 lr~~~  101 (116)
T 1wgh_A           97 ARETL  101 (116)
T ss_dssp             ECSSC
T ss_pred             ccCCC
Confidence            87653

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.68  E-value=8.4e-17  Score=126.28  Aligned_cols=78  Identities=36%  Similarity=0.590  Sum_probs=71.8

Q ss_pred             CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeecc
Q 012714           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (458)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~~  152 (458)
                      ..|+|+||+++|+.++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.+++++
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg   80 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG   80 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence            469999999999999999999999999999999999999999999999999999999999999999999999876554

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=4.4e-17  Score=127.10  Aligned_cols=76  Identities=80%  Similarity=1.167  Sum_probs=72.5

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   79 (85)
T 3n3k_B            4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG   79 (85)
T ss_dssp             CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987754

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=1.7e-16  Score=126.38  Aligned_cols=75  Identities=29%  Similarity=0.573  Sum_probs=71.6

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhh---cCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~---~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      |+|+|++.+|+.+.++|++++||.+||++|++.   .|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.++..
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~   78 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence            789999999999999999999999999999999   789999999999999999999999999999999999987643

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.68  E-value=6e-17  Score=129.40  Aligned_cols=79  Identities=91%  Similarity=1.240  Sum_probs=73.9

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCCeEE
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI   79 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i   79 (458)
                      |+|+|++++|++++++|.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++...
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~   80 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL   80 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999887654

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.68  E-value=5.3e-17  Score=129.03  Aligned_cols=72  Identities=22%  Similarity=0.444  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCcEEEEE--eecCccHHHHHHHh-hcccCCCCCceEEEEeeeeccCCCCcccccc-ccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLE--VESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~--v~~~dtv~~~K~~i-~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i-~~~sti~l~~~   72 (458)
                      |+|+|++++|++|+++  |.+++||.+||++| +++.|+|+++|+|+|+|+.|+|+.+|++|+| .++++++++++
T Consensus        20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs   95 (98)
T 4a20_A           20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK   95 (98)
T ss_dssp             EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence            7999999999988875  55999999999999 9999999999999999999999999999999 99999999875

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.68  E-value=4.4e-17  Score=129.25  Aligned_cols=75  Identities=28%  Similarity=0.461  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCC-CCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~-~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|||++++| +++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|.++++++|+++++++
T Consensus        16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg   91 (94)
T 2kan_A           16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR   91 (94)
T ss_dssp             EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred             EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence            7899999988 999999999999999999999999999999999999999999 99999999999999999987754

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.68  E-value=6.8e-17  Score=131.20  Aligned_cols=75  Identities=21%  Similarity=0.426  Sum_probs=70.6

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      |+|+||+.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++++..
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~   76 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK   76 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987643

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=5.5e-17  Score=127.14  Aligned_cols=76  Identities=34%  Similarity=0.532  Sum_probs=73.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG   83 (87)
T 1wh3_A            8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred             EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999987765

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.68  E-value=9.2e-17  Score=122.37  Aligned_cols=76  Identities=95%  Similarity=1.320  Sum_probs=73.2

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++.+|+++++++.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.++++++
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999887653

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.67  E-value=8.8e-17  Score=130.75  Aligned_cols=77  Identities=29%  Similarity=0.449  Sum_probs=69.4

Q ss_pred             eeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCC-------CCCEEEEEEE
Q 012714          381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR  452 (458)
Q Consensus       381 ~~i~vk~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~-------~~~~i~~~~~  452 (458)
                      |.++++...++ ++.++|++++||.+||++|+.+.|+|+++|||+|+|+.|+|++||++|||+       ++++||+.+|
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            45555555554 588999999999999999999999999999999999999999999999999       7999999999


Q ss_pred             ecCCCC
Q 012714          453 LRGGEF  458 (458)
Q Consensus       453 ~~~g~~  458 (458)
                       .||.|
T Consensus        81 -~~g~f   85 (118)
T 2fnj_B           81 -ADDTF   85 (118)
T ss_dssp             -SSSCB
T ss_pred             -CCCce
Confidence             88876

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.49  E-value=3.9e-18  Score=130.13  Aligned_cols=75  Identities=33%  Similarity=0.588  Sum_probs=72.8

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++++|++++++|.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988764

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.67  E-value=2.6e-17  Score=146.32  Aligned_cols=82  Identities=91%  Similarity=1.230  Sum_probs=79.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCCeEEE
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~~~i~   80 (458)
                      |+|+|++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++++++..++
T Consensus       106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f  185 (189)
T 3q3f_A          106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF  185 (189)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred             eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             EE
Q 012714           81 VK   82 (458)
Q Consensus        81 vk   82 (458)
                      ||
T Consensus       186 vk  187 (189)
T 3q3f_A          186 TK  187 (189)
T ss_dssp             CC
T ss_pred             Ee
Confidence            76

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=1.8e-16  Score=122.39  Aligned_cols=76  Identities=39%  Similarity=0.693  Sum_probs=72.6

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      +..|+|+|++.+|+.+.++|++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++||++++.
T Consensus         5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            4569999999999999999999999999999999999999999999999999999999999999999999998774

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=1.7e-17  Score=132.99  Aligned_cols=76  Identities=24%  Similarity=0.372  Sum_probs=71.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCC---------------CceEEEEeeeecc-CCCCccccccccc
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQKE   64 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~---------------~~q~l~~~g~~L~-d~~tl~~y~i~~~   64 (458)
                      |+|+|++++|++++++|++++||.+||++|+++.|+|+               ++|+|+|+|+.|. |+.||.+|+|.++
T Consensus         8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g   87 (105)
T 1v2y_A            8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence            89999999999999999999999999999999999988               4679999999996 6699999999999


Q ss_pred             cccceeEeecCC
Q 012714           65 STLHLVLRLRGG   76 (458)
Q Consensus        65 sti~l~~~~~~~   76 (458)
                      +++||++++++.
T Consensus        88 ~~l~lv~~lr~~   99 (105)
T 1v2y_A           88 DEVSFIKKLGQK   99 (105)
T ss_dssp             EEEEEEECSCSC
T ss_pred             CEEEEEehhccC
Confidence            999999988754

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.67  E-value=5.9e-17  Score=131.60  Aligned_cols=74  Identities=22%  Similarity=0.437  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~   74 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++..
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~   75 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK   75 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998643

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.67  E-value=2.2e-16  Score=139.02  Aligned_cols=77  Identities=96%  Similarity=1.312  Sum_probs=74.0

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      |+|+||+.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|++|+|++|++||+++|.+||.
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~   77 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG   77 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999984

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=6.1e-17  Score=129.77  Aligned_cols=79  Identities=24%  Similarity=0.387  Sum_probs=72.2

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC---------------CceEEEEcCeecC-CCCCccccCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNI  441 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~---------------~~q~Li~~G~~L~-d~~tL~~~~i  441 (458)
                      ...|+|+|++++|+.++++|++++||++||++|+++.++|+               .+|+|+|+|+.|. |++||++|+|
T Consensus         5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI   84 (105)
T 1v2y_A            5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI   84 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred             CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence            34699999999999999999999999999999999999877               3579999999996 6799999999


Q ss_pred             CCCCEEEEEEEecCC
Q 012714          442 QKESTLHLVLRLRGG  456 (458)
Q Consensus       442 ~~~~~i~~~~~~~~g  456 (458)
                      ++|++||++.+.++.
T Consensus        85 ~~g~~l~lv~~lr~~   99 (105)
T 1v2y_A           85 RNRDEVSFIKKLGQK   99 (105)
T ss_dssp             CSSEEEEEEECSCSC
T ss_pred             CCCCEEEEEehhccC
Confidence            999999999987664

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=1e-16  Score=125.02  Aligned_cols=76  Identities=92%  Similarity=1.254  Sum_probs=73.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG   79 (85)
T 3mtn_B            4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG   79 (85)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987754

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=1.1e-16  Score=125.95  Aligned_cols=76  Identities=37%  Similarity=0.627  Sum_probs=72.7

Q ss_pred             CeEEEEcCCC-cEEEE-EeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g-~~~~~-~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++++| +++++ +|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG   85 (89)
T 1wy8_A            8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG   85 (89)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence            7999999999 79999 5999999999999999999999999999999999999999999999999999999987765

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.66  E-value=2.2e-16  Score=129.94  Aligned_cols=86  Identities=27%  Similarity=0.454  Sum_probs=74.6

Q ss_pred             EEEEeecCceeEEEEcCCCcEE-EEEecCCCcHHHHHHHH-----HhhcCCCC--CceEEEEcCeecCCCCCccccCCCC
Q 012714          372 HLVLRLRGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQK  443 (458)
Q Consensus       372 ~l~~~~~~~~~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i-----~~~~~~~~--~~q~Li~~G~~L~d~~tL~~~~i~~  443 (458)
                      ||-....+.|+|+||+.+|+.+ .++++|++||.+||++|     +++.|+|+  ++|||||+||.|+|+.||++|+|++
T Consensus         8 ~~~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~   87 (126)
T 1se9_A            8 HLEAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPV   87 (126)
T ss_dssp             --CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCT
T ss_pred             hhhhhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCc
Confidence            3444456789999999999988 79999999999999999     45567876  8999999999999999999999999


Q ss_pred             C------CEEEEEEEecCCC
Q 012714          444 E------STLHLVLRLRGGE  457 (458)
Q Consensus       444 ~------~~i~~~~~~~~g~  457 (458)
                      |      +++|++++.++|.
T Consensus        88 ~~~~~~v~tmhlVlrl~g~~  107 (126)
T 1se9_A           88 SNLAGAVTTMHVIIQAPVTE  107 (126)
T ss_dssp             TSCTTCCEEEEEEECCCSSC
T ss_pred             CCccCCcEEEEEEeccCCcc
Confidence            8      6899999988763

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.66  E-value=8.3e-17  Score=127.55  Aligned_cols=74  Identities=36%  Similarity=0.620  Sum_probs=71.2

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++  |++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus        20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred             EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            8999999  8999999999999999999999999999999999999999999999999999999999999987753

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.66  E-value=4.6e-16  Score=125.13  Aligned_cols=81  Identities=30%  Similarity=0.363  Sum_probs=75.2

Q ss_pred             eecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       376 ~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      ..+..|+|+|++. |+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+.++
T Consensus        21 ~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~   99 (101)
T 2klc_A           21 GHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN   99 (101)
T ss_dssp             --CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred             CCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence            4467799999999 899999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CC
Q 012714          456 GE  457 (458)
Q Consensus       456 g~  457 (458)
                      .+
T Consensus       100 ~~  101 (101)
T 2klc_A          100 RP  101 (101)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.66  E-value=1.5e-16  Score=130.54  Aligned_cols=81  Identities=32%  Similarity=0.446  Sum_probs=77.4

Q ss_pred             ecCceeEEEEcC---CCcEEEEEecC-CCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          377 LRGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       377 ~~~~~~i~vk~~---~g~~~~~~v~~-~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      .+.+|+|+|+++   +|+.+.++|++ ++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++
T Consensus        24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r  103 (111)
T 1we6_A           24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred             CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence            467899999999   89999999998 99999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCC
Q 012714          453 LRGGE  457 (458)
Q Consensus       453 ~~~g~  457 (458)
                      .+||.
T Consensus       104 ~~GGk  108 (111)
T 1we6_A          104 ERSGP  108 (111)
T ss_dssp             SCCSS
T ss_pred             cCCCC
Confidence            99984

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.66  E-value=2.1e-16  Score=127.86  Aligned_cols=77  Identities=30%  Similarity=0.458  Sum_probs=69.9

Q ss_pred             eeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCC-------CCEEEEEEE
Q 012714          381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR  452 (458)
Q Consensus       381 ~~i~vk~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~-------~~~i~~~~~  452 (458)
                      |.++++...++ ++.++|++++||.+||++|+.+.|+|+++|||+|+|+.|+|++||++|||++       +++||+++|
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            45666666665 7788999999999999999999999999999999999999999999999999       999999999


Q ss_pred             ecCCCC
Q 012714          453 LRGGEF  458 (458)
Q Consensus       453 ~~~g~~  458 (458)
                      . +|.|
T Consensus        81 ~-~~~f   85 (118)
T 4ajy_B           81 A-DDTF   85 (118)
T ss_dssp             C-SSCC
T ss_pred             c-CCCc
Confidence            7 6766

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=2.2e-16  Score=125.74  Aligned_cols=73  Identities=30%  Similarity=0.597  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcc---cCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~---~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|++++|++++++|.+++||.+||++|++.   .|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~   76 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK   76 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence            899999999999999999999999999999998   8999999999999999999999999999999999998754

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.66  E-value=1.4e-16  Score=130.47  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=73.1

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus        36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999987753

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=1.3e-16  Score=127.50  Aligned_cols=79  Identities=27%  Similarity=0.328  Sum_probs=75.3

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      +..|+|+|++. |+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++||++.+.++|+
T Consensus        15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~   93 (96)
T 1wx8_A           15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP   93 (96)
T ss_dssp             SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred             CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence            35699999999 99999999999999999999999999999999999999999999999999999999999999988874

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.65  E-value=3.9e-16  Score=121.66  Aligned_cols=76  Identities=29%  Similarity=0.501  Sum_probs=71.5

Q ss_pred             cCCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHH---hCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEe
Q 012714           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (458)
Q Consensus        74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~  149 (458)
                      +..|+|+||+.+|+.+.+++++++||.+||++|++.   +|+|+++|+|+|+|+.|+|+.+|++|+|.+|++||++.+.
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence            568999999999999999999999999999999998   8999999999999999999999999999999999998764

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=3.2e-16  Score=127.32  Aligned_cols=79  Identities=27%  Similarity=0.449  Sum_probs=75.1

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      +..|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|++|+|++|++||++.+.+.+
T Consensus        21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~   99 (106)
T 1ttn_A           21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ   99 (106)
T ss_dssp             CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred             CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            4469999999999999999999999999999999999999999999999999999999999999999999999987655

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.46  E-value=8.7e-18  Score=128.19  Aligned_cols=75  Identities=33%  Similarity=0.588  Sum_probs=73.0

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      |+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|.+|
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999876

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.65  E-value=1.4e-16  Score=131.96  Aligned_cols=75  Identities=24%  Similarity=0.378  Sum_probs=69.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhc------ccCCC--CCceEEEEeeeeccCCCCcccccccccc--cccee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV   70 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~------~~gip--~~~q~l~~~g~~L~d~~tl~~y~i~~~s--ti~l~   70 (458)
                      |+|+|++++|++++++|++++||.+||++|++      ++|+|  +++|+|+|+|+.|+|++||++|+|..++  ++||+
T Consensus        18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv   97 (125)
T 2gow_A           18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   97 (125)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            68999999999999999999999999999999      78985  8999999999999999999999999665  78998


Q ss_pred             EeecC
Q 012714           71 LRLRG   75 (458)
Q Consensus        71 ~~~~~   75 (458)
                      +++..
T Consensus        98 ~r~~~  102 (125)
T 2gow_A           98 ARETL  102 (125)
T ss_dssp             ECSCC
T ss_pred             ecCCC
Confidence            87654

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=2.4e-16  Score=121.65  Aligned_cols=73  Identities=40%  Similarity=0.690  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|++.+|++++++|.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus         8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998765

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.65  E-value=3.4e-16  Score=139.10  Aligned_cols=85  Identities=86%  Similarity=1.133  Sum_probs=79.0

Q ss_pred             EEEeecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          373 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       373 l~~~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      +...-.-.|+|+||+.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++++
T Consensus        98 y~T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr  177 (189)
T 3q3f_A           98 YKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  177 (189)
T ss_dssp             EEESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred             EEcccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence            33333456999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCC
Q 012714          453 LRGGE  457 (458)
Q Consensus       453 ~~~g~  457 (458)
                      .+||.
T Consensus       178 lrGG~  182 (189)
T 3q3f_A          178 LRGGG  182 (189)
T ss_dssp             CCCCC
T ss_pred             cCCCC
Confidence            99884

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.65  E-value=6.7e-16  Score=126.04  Aligned_cols=79  Identities=23%  Similarity=0.350  Sum_probs=70.3

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHh------hcCC--CCCceEEEEcCeecCCCCCccccCCCCC--CEE
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL  447 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~------~~~~--~~~~q~Li~~G~~L~d~~tL~~~~i~~~--~~i  447 (458)
                      ++.|.|+||+.+|++++++|++++||.+||++|++      +.++  |+++|||||+|+.|+|+.||++|+|+.+  ++|
T Consensus        14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl   93 (116)
T 1wgh_A           14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM   93 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence            45699999999999999999999999999999999      5564  6999999999999999999999999876  568


Q ss_pred             EEEEEecCC
Q 012714          448 HLVLRLRGG  456 (458)
Q Consensus       448 ~~~~~~~~g  456 (458)
                      |+++|..++
T Consensus        94 hLvlr~~~~  102 (116)
T 1wgh_A           94 HLVARETLP  102 (116)
T ss_dssp             EEEECSSCS
T ss_pred             EEEccCCCC
Confidence            888776543

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=1.8e-16  Score=125.27  Aligned_cols=71  Identities=23%  Similarity=0.294  Sum_probs=64.2

Q ss_pred             EEEcCC----CcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            4 FVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         4 ~~~~~~----g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      -|+..+    |++++++|++++||.+||++|++++|+|+++|+|+|+|++|+|++||++|+|.++++| +++++++
T Consensus        19 ~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg   93 (100)
T 1wju_A           19 EVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ   93 (100)
T ss_dssp             EEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred             EEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence            344455    7899999999999999999999999999999999999999999999999999999999 6665554

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.64  E-value=3.3e-16  Score=126.36  Aligned_cols=80  Identities=20%  Similarity=0.362  Sum_probs=74.3

Q ss_pred             CceeEEEEcCCC----cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC-CCccccCCCCCCEEEEEEEe
Q 012714          379 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       379 ~~~~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~-~tL~~~~i~~~~~i~~~~~~  453 (458)
                      ..|+|+|++.++    +.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+ +||++|+|++|++||++.+.
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~   85 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence            459999999754    7999999999999999999999999999999999999999988 69999999999999999999


Q ss_pred             cCCCC
Q 012714          454 RGGEF  458 (458)
Q Consensus       454 ~~g~~  458 (458)
                      ++|++
T Consensus        86 ~gg~~   90 (102)
T 1v5o_A           86 NVGLR   90 (102)
T ss_dssp             CCCCS
T ss_pred             CCCCC
Confidence            98863

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.64  E-value=2.4e-16  Score=125.64  Aligned_cols=72  Identities=24%  Similarity=0.253  Sum_probs=68.3

Q ss_pred             CeEEEEcCCC--cEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccc-ccccccceeEe
Q 012714            1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g--~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i-~~~sti~l~~~   72 (458)
                      |+|+|++..|  .+++++|.|++||.+||++|++++|||+++||++|+|+.|+|++||++|+| ++++++||++-
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence            6899999875  799999999999999999999999999999999999999999999999999 69999999874

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.64  E-value=4.8e-17  Score=130.75  Aligned_cols=92  Identities=32%  Similarity=0.529  Sum_probs=67.9

Q ss_pred             CCccccccccccccceeEeecCCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchh
Q 012714           54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA  133 (458)
Q Consensus        54 ~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~  133 (458)
                      .-++||+|.  +|.++.++....|.|+||+ +|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|+
T Consensus         8 ~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~   84 (101)
T 3m63_B            8 HPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE   84 (101)
T ss_dssp             -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred             CCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence            457888885  4566665555667888987 8999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccceeEEEE
Q 012714          134 DYNIQKESTLHLVLR  148 (458)
Q Consensus       134 ~~~i~~~s~i~l~~~  148 (458)
                      +|+|.+|++|+|+.+
T Consensus        85 ~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           85 SYHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTTCCTTEEEEECCC
T ss_pred             HCCCCCCCEEEEEeC
Confidence            999999999998764

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.64  E-value=9e-16  Score=117.19  Aligned_cols=72  Identities=33%  Similarity=0.568  Sum_probs=68.9

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      +|+|+|++ +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++.+
T Consensus         4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            38999999 9999999999999999999999999999999999999999999999999999999999998764

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=6.1e-16  Score=125.75  Aligned_cols=79  Identities=33%  Similarity=0.427  Sum_probs=74.4

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      +..|+|+|++.+|+ +.++|++++||.+||++|+++.|+++++|+|+|+|+.|+|+++|++|+|++|++||++.+.++|+
T Consensus        15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~   93 (106)
T 1wx7_A           15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA   93 (106)
T ss_dssp             SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred             CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence            34599999999886 79999999999999999999999999999999999999999999999999999999999988874

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=2.3e-16  Score=125.17  Aligned_cols=76  Identities=29%  Similarity=0.482  Sum_probs=71.3

Q ss_pred             CeEEEEcCCCc--EEEEEeecCccHHHHHHHhhccc--CCCCCceEEEEeeeeccCCCCcccc--ccccccccceeEeec
Q 012714            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR   74 (458)
Q Consensus         1 ~~i~~~~~~g~--~~~~~v~~~dtv~~~K~~i~~~~--gip~~~q~l~~~g~~L~d~~tl~~y--~i~~~sti~l~~~~~   74 (458)
                      |+|+|++++|+  ++++++.+++||.+||++|+++.  |+|+++|+|+|+|+.|+|+.+|++|  +|.+++++||+++++
T Consensus         8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~   87 (93)
T 1wgd_A            8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK   87 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred             EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence            79999999998  77788889999999999999998  9999999999999999999999999  999999999998876


Q ss_pred             CC
Q 012714           75 GG   76 (458)
Q Consensus        75 ~~   76 (458)
                      ++
T Consensus        88 gg   89 (93)
T 1wgd_A           88 SG   89 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=8.4e-16  Score=128.24  Aligned_cols=78  Identities=29%  Similarity=0.363  Sum_probs=70.9

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      ..|+|+|++. |+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|+|++|++|+++.+.++|.
T Consensus        31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~  108 (125)
T 1j8c_A           31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS  108 (125)
T ss_dssp             CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred             CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence            4699999999 99999999999999999999999999999999999999999999999999999999999999988873

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.63  E-value=7.7e-16  Score=127.53  Aligned_cols=79  Identities=23%  Similarity=0.344  Sum_probs=71.2

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHh------hcCC--CCCceEEEEcCeecCCCCCccccCCCCCC--EE
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TL  447 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~------~~~~--~~~~q~Li~~G~~L~d~~tL~~~~i~~~~--~i  447 (458)
                      +..|.|+||+.+|++++++|+|++||.+||++|++      +.|+  ++++|||||+||.|+|++||++|+|++|+  ++
T Consensus        15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl   94 (125)
T 2gow_A           15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM   94 (125)
T ss_dssp             TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence            34589999999999999999999999999999999      6677  58999999999999999999999999777  68


Q ss_pred             EEEEEecCC
Q 012714          448 HLVLRLRGG  456 (458)
Q Consensus       448 ~~~~~~~~g  456 (458)
                      |+++|.+++
T Consensus        95 hlv~r~~~~  103 (125)
T 2gow_A           95 HLVARETLP  103 (125)
T ss_dssp             EEEECSCCS
T ss_pred             EEEecCCCC
Confidence            888887654

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.62  E-value=5.5e-16  Score=118.41  Aligned_cols=71  Identities=34%  Similarity=0.574  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |+|+|++ +|+++++++.+++||.+||.+|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+..+
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            7899999 9999999999999999999999999999999999999999999999999999999999999764

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.62  E-value=1.2e-15  Score=125.93  Aligned_cols=80  Identities=29%  Similarity=0.578  Sum_probs=73.4

Q ss_pred             cCceeEEEEcC----------CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEE
Q 012714          378 RGGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL  447 (458)
Q Consensus       378 ~~~~~i~vk~~----------~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i  447 (458)
                      +.++.|.|+.+          +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|
T Consensus        23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i  102 (115)
T 1we7_A           23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI  102 (115)
T ss_dssp             CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred             CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence            45666777665          47889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCC
Q 012714          448 HLVLRLRGGE  457 (458)
Q Consensus       448 ~~~~~~~~g~  457 (458)
                      |++++.+||.
T Consensus       103 ~lv~rl~GGk  112 (115)
T 1we7_A          103 HLALKERSGP  112 (115)
T ss_dssp             EEEECCCSCC
T ss_pred             EEEEEcCCCC
Confidence            9999999984

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.62  E-value=4e-16  Score=126.74  Aligned_cols=74  Identities=28%  Similarity=0.525  Sum_probs=71.3

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~   74 (458)
                      |+|+|++++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++||+++.+
T Consensus        24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~   97 (106)
T 1ttn_A           24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   97 (106)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999988644

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.62  E-value=3.7e-17  Score=137.55  Aligned_cols=78  Identities=95%  Similarity=1.292  Sum_probs=1.0

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF  458 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~~  458 (458)
                      |+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.||++|+|++|++||++++.+||.+
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~   78 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGII   78 (128)
T ss_dssp             ----------------------------------------------------------------------------CC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999863

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.61  E-value=3.8e-16  Score=124.42  Aligned_cols=70  Identities=24%  Similarity=0.394  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCc--EEEEEeecCccHHHHHHHhhcc-cCCC-CCceEEEEeeeeccCCCCcccc--cccccccccee
Q 012714            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV   70 (458)
Q Consensus         1 ~~i~~~~~~g~--~~~~~v~~~dtv~~~K~~i~~~-~gip-~~~q~l~~~g~~L~d~~tl~~y--~i~~~sti~l~   70 (458)
                      |+|+|++++|+  +++++|.+++||.+||++|+++ .|+| +++|+|+|+|+.|+|+++|++|  +|.+++++||+
T Consensus        24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            78999999998  7899999999999999999985 6766 4999999999999999999999  99999999985

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.60  E-value=8.2e-16  Score=123.36  Aligned_cols=74  Identities=35%  Similarity=0.490  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++.+|+ ++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++.++
T Consensus        23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~   96 (100)
T 1yqb_A           23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   96 (100)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence            78999999997 799999999999999999999999999999999999999999999999999999999987654

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.60  E-value=2.4e-15  Score=123.19  Aligned_cols=79  Identities=92%  Similarity=1.246  Sum_probs=74.4

Q ss_pred             cCCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeecc
Q 012714           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (458)
Q Consensus        74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~~  152 (458)
                      ...|+|+||+.+|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++++
T Consensus        33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            3579999999999999999999999999999999999999999999999999999999999999999999999887653

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=121.86  Aligned_cols=73  Identities=23%  Similarity=0.349  Sum_probs=65.3

Q ss_pred             cCceeEEEEcCCCc--EEEEEecCCCcHHHHHHHHHhhc-CCC-CCceEEEEcCeecCCCCCcccc--CCCCCCEEEEE
Q 012714          378 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE-GIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV  450 (458)
Q Consensus       378 ~~~~~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~-~~~-~~~q~Li~~G~~L~d~~tL~~~--~i~~~~~i~~~  450 (458)
                      +..|+|+||+++|+  .++++|++++||.+||++|+++. |.| +++|||+|+|+.|+|++||++|  +|++|++|||+
T Consensus        21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            45699999999998  67899999999999999999964 554 5999999999999999999999  99999999974

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.60  E-value=6e-17  Score=136.28  Aligned_cols=76  Identities=97%  Similarity=1.333  Sum_probs=0.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++++|++++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.||++|+|.+++++||+++++++
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG   76 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (128)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999887765

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.60  E-value=6.3e-16  Score=123.41  Aligned_cols=75  Identities=28%  Similarity=0.373  Sum_probs=71.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++. |++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++|++++++++
T Consensus        18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g   92 (96)
T 1wx8_A           18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG   92 (96)
T ss_dssp             EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred             EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence            78999999 9999999999999999999999999999999999999999999999999999999999999876653

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.60  E-value=4.4e-15  Score=118.29  Aligned_cols=74  Identities=23%  Similarity=0.232  Sum_probs=69.2

Q ss_pred             ceeEEEEcCCC--cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCC-CCCCEEEEEEEe
Q 012714          380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL  453 (458)
Q Consensus       380 ~~~i~vk~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i-~~~~~i~~~~~~  453 (458)
                      .|+|+|++..+  ..++++|+|++||.+||++|++++|+|++.|||+|+|+.++|+.||++||| ++|+++|+++-.
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~  100 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS  100 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence            48999999875  688999999999999999999999999999999999999999999999999 699999998754

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.59  E-value=7.9e-17  Score=138.54  Aligned_cols=76  Identities=97%  Similarity=1.333  Sum_probs=0.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++++|++++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+|.+++++||++++.++
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG   76 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (152)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987764

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.59  E-value=8e-16  Score=126.12  Aligned_cols=76  Identities=33%  Similarity=0.468  Sum_probs=72.8

Q ss_pred             CeEEEEcC---CCcEEEEEeec-CccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~---~g~~~~~~v~~-~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|+++   +|++++++|.+ ++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus        28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG  107 (111)
T 1we6_A           28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG  107 (111)
T ss_dssp             EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred             EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence            68999998   89999999998 999999999999999999999999999999999999999999999999999887765

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.58  E-value=1.1e-16  Score=137.53  Aligned_cols=77  Identities=96%  Similarity=1.312  Sum_probs=0.0

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      |+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.||++|+|++|++||++++.+||.
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg   77 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG   77 (152)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999998883

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=6.8e-15  Score=118.14  Aligned_cols=74  Identities=16%  Similarity=0.300  Sum_probs=69.1

Q ss_pred             eeEEEE-cCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714          381 MQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       381 ~~i~vk-~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      +.|.|+ .+.++.++++++++.||++||+.++++.++|++.|+|+|+||.|+|+.||++|||++|.+|||+++..
T Consensus        16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~   90 (118)
T 2daf_A           16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST   90 (118)
T ss_dssp             EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred             EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence            566776 66788999999999999999999999999999999999999999999999999999999999998753

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.58  E-value=2.8e-15  Score=120.55  Aligned_cols=73  Identities=33%  Similarity=0.450  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~   74 (458)
                      |+|+|++. |++++++|.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+.+
T Consensus        26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred             EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence            78999999 89999999999999999999999999999999999999999999999999999999999988654

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.58  E-value=2.6e-15  Score=125.24  Aligned_cols=75  Identities=31%  Similarity=0.401  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|+|++. |++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.++++|+++.+..++
T Consensus        33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg  107 (125)
T 1j8c_A           33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN  107 (125)
T ss_dssp             EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred             EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence            78999999 9999999999999999999999999999999999999999999999999999999999999876643

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.57  E-value=1.7e-16  Score=139.97  Aligned_cols=71  Identities=30%  Similarity=0.415  Sum_probs=0.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|||++++|++++|+|+++|||.+||++|++++|||+++|+|+|+|++|+|+.||+     ++|+|||+++++++
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG   71 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG   71 (189)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence            899999999999999999999999999999999999999999999999999999998     99999999988765

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.57  E-value=5.7e-15  Score=117.56  Aligned_cols=74  Identities=27%  Similarity=0.410  Sum_probs=69.8

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCC-CCccccCCCCCCEEEEEEEecC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~-~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      ..|+|+|++.+|+.+.++|++++||.+||++|++..   +++|+|+|+|+.|+|+ ++|++|+|++|++||++.+.++
T Consensus         6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~   80 (95)
T 1wia_A            6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence            469999999999999999999999999999999987   8999999999999999 9999999999999999988654

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.56  E-value=2.9e-15  Score=120.76  Aligned_cols=76  Identities=20%  Similarity=0.376  Sum_probs=70.2

Q ss_pred             CeEEEEcCCC----cEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCC-CCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g----~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~-~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++.+|    ++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+ ++|++|+|.+++++|+..+.++
T Consensus         8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g   87 (102)
T 1v5o_A            8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV   87 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred             EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence            7999999755    7999999999999999999999999999999999999999887 7999999999999999887654


Q ss_pred             C
Q 012714           76 G   76 (458)
Q Consensus        76 ~   76 (458)
                      +
T Consensus        88 g   88 (102)
T 1v5o_A           88 G   88 (102)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.56  E-value=4.5e-15  Score=120.60  Aligned_cols=74  Identities=35%  Similarity=0.490  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++.+|+ +.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.++++||++.++++
T Consensus        18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~   91 (106)
T 1wx7_A           18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   91 (106)
T ss_dssp             EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence            78999999996 799999999999999999999999999999999999999999999999999999999987654

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.55  E-value=1.1e-14  Score=118.34  Aligned_cols=78  Identities=28%  Similarity=0.406  Sum_probs=71.0

Q ss_pred             CceeEEEEcCCC---cEEEEEe--------cC-CCcHHHHHHHHHhhc--CCCCCc-eEEEEcCeecCCCCCccccCCCC
Q 012714          379 GGMQIFVKTLTG---KTITLEV--------ES-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK  443 (458)
Q Consensus       379 ~~~~i~vk~~~g---~~~~~~v--------~~-~~tV~~lK~~i~~~~--~~~~~~-q~Li~~G~~L~d~~tL~~~~i~~  443 (458)
                      ..|+|+||+.++   +.+.+++        ++ ++||.+||++|++..  |+|+++ |+|+|+|+.|+|+++|++|+|++
T Consensus        11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~   90 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP   90 (107)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred             CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence            458999999999   8899994        45 499999999999999  999999 99999999999999999999999


Q ss_pred             CCEEEEEEEecCC
Q 012714          444 ESTLHLVLRLRGG  456 (458)
Q Consensus       444 ~~~i~~~~~~~~g  456 (458)
                      |++||++.+..+.
T Consensus        91 g~~i~lv~~~~~~  103 (107)
T 1x1m_A           91 GSTVHVLRKSWSG  103 (107)
T ss_dssp             TCEEEEEESSCCS
T ss_pred             CCEEEEEeCCCCC
Confidence            9999999876543

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.54  E-value=2.1e-14  Score=113.23  Aligned_cols=80  Identities=16%  Similarity=0.371  Sum_probs=76.5

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      ++.|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++++||+|+|+.|.+++|+++|++++||+|+++.+++||.
T Consensus         5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~   84 (94)
T 2io1_B            5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV   84 (94)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999985

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.54  E-value=1.2e-14  Score=114.32  Aligned_cols=75  Identities=21%  Similarity=0.426  Sum_probs=69.9

Q ss_pred             cCceeEEEEcCCCcEEEE-EecCCCcHHHHHHHHHhhcCCCCCceEEE---EcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          378 RGGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~-~v~~~~tV~~lK~~i~~~~~~~~~~q~Li---~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      +..|+|+|+. .|+.+.+ +|++++||.+||++|+++.|+|+++|+|+   |+|+.|+|+.+|++|+|++|++|+++...
T Consensus         5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~   83 (90)
T 1v5t_A            5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence            3469999997 7899999 99999999999999999999999999999   99999999999999999999999987654

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.54  E-value=1.6e-14  Score=119.14  Aligned_cols=80  Identities=29%  Similarity=0.568  Sum_probs=73.0

Q ss_pred             ecCCeEEEEEec----------CCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccc
Q 012714           73 LRGGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST  142 (458)
Q Consensus        73 ~~~~~~i~vk~~----------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~  142 (458)
                      ..++++|.|+.+          +|+.++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++
T Consensus        22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~  101 (115)
T 1we7_A           22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV  101 (115)
T ss_dssp             CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred             CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence            346778888875          4789999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeecc
Q 012714          143 LHLVLRLRGG  152 (458)
Q Consensus       143 i~l~~~~~~~  152 (458)
                      |||+++.+++
T Consensus       102 i~lv~rl~GG  111 (115)
T 1we7_A          102 IHLALKERSG  111 (115)
T ss_dssp             EEEEECCCSC
T ss_pred             EEEEEEcCCC
Confidence            9999887664

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=3.9e-15  Score=116.21  Aligned_cols=69  Identities=23%  Similarity=0.305  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCcEE--EE-EeecCccHHHHHHHhhc-ccCCCCCceEEEEe--eeeccCCCCccccccccccccce
Q 012714            1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL   69 (458)
Q Consensus         1 ~~i~~~~~~g~~~--~~-~v~~~dtv~~~K~~i~~-~~gip~~~q~l~~~--g~~L~d~~tl~~y~i~~~sti~l   69 (458)
                      |+|+|+++.|+.+  ++ +|+|++||.+||++|++ +.|+|+++|+|+|.  |+.|+|++||++|+|.+++++++
T Consensus        11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            8999999998775  58 99999999999999999 58999999999987  99999999999999999999876

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.53  E-value=2.1e-14  Score=111.53  Aligned_cols=70  Identities=29%  Similarity=0.452  Sum_probs=65.2

Q ss_pred             EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      +.+++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            4456678999999999999999999999999999999999999999999999999999999999988754

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=6e-15  Score=117.31  Aligned_cols=72  Identities=19%  Similarity=0.298  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEE--eeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~--~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |++|+.+.+|++++++|++++||.+||++|+++.|||+++|+|+|  .|+ |+|+.+|++|+|.+++++|+++..
T Consensus         9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred             eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence            788999999999999999999999999999999999999999987  566 999999999999999999998853

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.52  E-value=1.5e-14  Score=115.09  Aligned_cols=72  Identities=26%  Similarity=0.389  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCC-CCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~-~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++.+|++++++|.+++||.+||++|+++.   +++|+|+|+|+.|+|+ ++|.+|+|.++++||++++.+.
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~   80 (95)
T 1wia_A            8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence            7999999999999999999999999999999988   8999999999999999 9999999999999999886543

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.52  E-value=3.4e-14  Score=112.31  Aligned_cols=76  Identities=24%  Similarity=0.442  Sum_probs=69.2

Q ss_pred             cCceeEEEEcCCCcEEEEEecCC-----CcHHHHHHHHHhhcCCCCCceEEEEcCeecCC-CCCccccCCCCCCEEEEEE
Q 012714          378 RGGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~-----~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d-~~tL~~~~i~~~~~i~~~~  451 (458)
                      +..|+|+|++ .|+.+.++|+++     +||.+||++|++..|+|+++|+|+|+|+.|.| +.+|++|+|++|++||++.
T Consensus         5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~   83 (92)
T 1wxv_A            5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG   83 (92)
T ss_dssp             CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred             CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence            3468999999 488899999995     99999999999999999999999999999998 5689999999999999987


Q ss_pred             Eec
Q 012714          452 RLR  454 (458)
Q Consensus       452 ~~~  454 (458)
                      +..
T Consensus        84 ~~~   86 (92)
T 1wxv_A           84 KKN   86 (92)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            654

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.9e-14  Score=114.48  Aligned_cols=76  Identities=16%  Similarity=0.274  Sum_probs=70.0

Q ss_pred             CeEEEEE-ecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeec
Q 012714           76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (458)
Q Consensus        76 ~~~i~vk-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~  151 (458)
                      .++|+|+ ...+..++++++++.||.+||++++.+.++|+++|+|+|+|+.|.|+.||.+|||++|.+|||+.+...
T Consensus        15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~   91 (118)
T 2daf_A           15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN   91 (118)
T ss_dssp             CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred             cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence            4677777 557889999999999999999999999999999999999999999999999999999999999987543

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.51  E-value=2.8e-14  Score=110.84  Aligned_cols=70  Identities=29%  Similarity=0.452  Sum_probs=65.5

Q ss_pred             EEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEE
Q 012714           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (458)
Q Consensus        79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~  148 (458)
                      ..+++++|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.+
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            3456789999999999999999999999999999999999999999999999999999999999998754

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.51  E-value=1.9e-14  Score=114.34  Aligned_cols=73  Identities=18%  Similarity=0.316  Sum_probs=67.9

Q ss_pred             CceeEEEEcCCCcEE-EEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          379 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      ..|+|+|+. .|+.+ .++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+++...
T Consensus         6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~   79 (96)
T 1wgg_A            6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred             cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence            468999996 68999 6999999999999999999999999999999999999999 9999999999999987654

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.51  E-value=2.5e-14  Score=110.92  Aligned_cols=70  Identities=17%  Similarity=0.279  Sum_probs=62.5

Q ss_pred             EEEE--cCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEE-------eeeeccCCCCccccccccccccceeEe
Q 012714            3 IFVK--TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         3 i~~~--~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~-------~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |.|.  ..+++.+.+++++++||.+||+||+.++|||+++|+|+|       .|++|+|+++|.+|+|+++++|||+-.
T Consensus         5 v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A            5 VSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             EEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            4444  345677889999999999999999999999999999996       599999999999999999999999864

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.50  E-value=9.5e-14  Score=108.64  Aligned_cols=81  Identities=16%  Similarity=0.387  Sum_probs=77.0

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      ++.|+|.|++.+|+.+.+.|.+++++..|++..+++.|+++++++|+|+|+.|.+++|+++|++++||+|+++.+++||+
T Consensus         3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~   82 (91)
T 2io0_B            3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV   82 (91)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 012714          458 F  458 (458)
Q Consensus       458 ~  458 (458)
                      +
T Consensus        83 ~   83 (91)
T 2io0_B           83 Y   83 (91)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.50  E-value=1.6e-14  Score=113.63  Aligned_cols=72  Identities=21%  Similarity=0.412  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCcEEEE-EeecCccHHHHHHHhhcccCCCCCceEEE---EeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~-~v~~~dtv~~~K~~i~~~~gip~~~q~l~---~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|+. +|+++++ +|.+++||.+||++|+++.|+|+++|+|+   |+|+.|+|+.+|++|+|.++++++|+...
T Consensus         8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~   83 (90)
T 1v5t_A            8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence            7899996 7999999 99999999999999999999999999999   99999999999999999999999997643

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.50  E-value=3e-14  Score=112.60  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=63.3

Q ss_pred             CeEEEEcCCC--cEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEee--e---ec-cCCCCccccccccccccceeE
Q 012714            1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--K---QL-EDGRTLADYNIQKESTLHLVL   71 (458)
Q Consensus         1 ~~i~~~~~~g--~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g--~---~L-~d~~tl~~y~i~~~sti~l~~   71 (458)
                      +.|+|+..++  +++++++++++||.+||+||+.+.|||+++|+|+|.|  +   +| +|+++|++|+|+++++||++-
T Consensus        16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD   94 (95)
T 2kjr_A           16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD   94 (95)
T ss_dssp             EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred             EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence            3678887666  4899999999999999999999999999999999984  4   45 899999999999999999863

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.49  E-value=2.9e-14  Score=115.84  Aligned_cols=74  Identities=28%  Similarity=0.391  Sum_probs=68.7

Q ss_pred             CeEEEEcCCC---cEEEEEee--------c-CccHHHHHHHhhccc--CCCCCc-eEEEEeeeeccCCCCcccccccccc
Q 012714            1 MQIFVKTLTG---KTITLEVE--------S-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES   65 (458)
Q Consensus         1 ~~i~~~~~~g---~~~~~~v~--------~-~dtv~~~K~~i~~~~--gip~~~-q~l~~~g~~L~d~~tl~~y~i~~~s   65 (458)
                      |+|+|++.+|   +++++++.        + ++||.+||++|+++.  |+|+++ |+|+|+|+.|+|+++|.+|+|.+++
T Consensus        13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~   92 (107)
T 1x1m_A           13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS   92 (107)
T ss_dssp             CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred             eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence            7899999999   89999954        4 499999999999999  999999 9999999999999999999999999


Q ss_pred             ccceeEeec
Q 012714           66 TLHLVLRLR   74 (458)
Q Consensus        66 ti~l~~~~~   74 (458)
                      ++||+.+..
T Consensus        93 ~i~lv~~~~  101 (107)
T 1x1m_A           93 TVHVLRKSW  101 (107)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEEeCCC
Confidence            999988643

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.49  E-value=2.5e-14  Score=113.70  Aligned_cols=71  Identities=17%  Similarity=0.292  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCcEE-EEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~-~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|+. +|+++ .++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.++++++|+...
T Consensus         8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~   79 (96)
T 1wgg_A            8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred             EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence            7899995 78999 5999999999999999999999999999999999999999 9999999999999997653

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=6.6e-14  Score=111.28  Aligned_cols=72  Identities=19%  Similarity=0.312  Sum_probs=66.6

Q ss_pred             CeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEe--cCcccCCCcchhhcccccccceeEEEE
Q 012714           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR  148 (458)
Q Consensus        76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L~d~~tL~~~~i~~~s~i~l~~~  148 (458)
                      .|.++++.++|+.+++++++++||.+||++|++++||||++|+|+|  .|+ |+|+.+|++|+|++|++|||+..
T Consensus         8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~   81 (100)
T 2dzm_A            8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP   81 (100)
T ss_dssp             CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred             ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence            5777888899999999999999999999999999999999999996  566 99999999999999999999764

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=4.5e-14  Score=110.13  Aligned_cols=70  Identities=23%  Similarity=0.292  Sum_probs=64.5

Q ss_pred             ceeEEEEcCCCcEE--EE-EecCCCcHHHHHHHHHhh-cCCCCCceEEEEc--CeecCCCCCccccCCCCCCEEEE
Q 012714          380 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       380 ~~~i~vk~~~g~~~--~~-~v~~~~tV~~lK~~i~~~-~~~~~~~q~Li~~--G~~L~d~~tL~~~~i~~~~~i~~  449 (458)
                      .|+|+|++..|+.+  .+ +|+|++||.+||++|++. .|+|+++|+|+|.  |+.|+|+.||++|+|++|++||+
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            48999999998775  58 999999999999999994 7999999999987  99999999999999999999875

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.47  E-value=3.6e-14  Score=112.69  Aligned_cols=74  Identities=19%  Similarity=0.285  Sum_probs=67.0

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      ..|+|+|+. .|+.+.++|++++||.+||++|++..|+|+++|+|+|.|+.|+ +.+|++|+|++|++||++.+..
T Consensus        16 ~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~~   89 (95)
T 1v86_A           16 ELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGSTI   89 (95)
T ss_dssp             CCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSSC
T ss_pred             ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEeccc
Confidence            458899984 6889999999999999999999999999999999999999994 5599999999999999876543

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.46  E-value=2.1e-13  Score=107.70  Aligned_cols=73  Identities=14%  Similarity=0.158  Sum_probs=64.2

Q ss_pred             cCceeEEEEcCCCc--EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc--Ce---e-cCCCCCccccCCCCCCEEEE
Q 012714          378 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---Q-LEDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       378 ~~~~~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~--G~---~-L~d~~tL~~~~i~~~~~i~~  449 (458)
                      ++.+.|+|+...++  .+++++++++||.+||++|+..+|+|+++|||+|.  |+   . ++|+++|++|+|++|++||+
T Consensus        13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl   92 (95)
T 2kjr_A           13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV   92 (95)
T ss_dssp             CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred             CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence            34567888877664  78999999999999999999999999999999998  45   3 48999999999999999997


Q ss_pred             E
Q 012714          450 V  450 (458)
Q Consensus       450 ~  450 (458)
                      +
T Consensus        93 v   93 (95)
T 2kjr_A           93 V   93 (95)
T ss_dssp             E
T ss_pred             E
Confidence            5

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.46  E-value=1.7e-13  Score=106.24  Aligned_cols=66  Identities=18%  Similarity=0.273  Sum_probs=60.4

Q ss_pred             CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE-------cCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       388 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~-------~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      ...+.++..+++++||++||++|+.++|+|+++|+|+|       .|+.|+|+++|++|+|++|++||++-+.
T Consensus        12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~   84 (86)
T 4b6w_A           12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ   84 (86)
T ss_dssp             CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence            34567799999999999999999999999999999997       5899999999999999999999997653

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.46  E-value=1.6e-13  Score=108.43  Aligned_cols=74  Identities=24%  Similarity=0.453  Sum_probs=67.9

Q ss_pred             CCeEEEEEecCCcEEEEEEeCC-----CCHHHHHHHHhHHhCCCCCCeEEEecCcccCC-CcchhhcccccccceeEEEE
Q 012714           75 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR  148 (458)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~-----~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d-~~tL~~~~i~~~s~i~l~~~  148 (458)
                      ..|+|+||+ .|+.+.++++++     +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|.+|++|||+.+
T Consensus         6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            468999997 688999999996     99999999999999999999999999999998 66899999999999999865


Q ss_pred             e
Q 012714          149 L  149 (458)
Q Consensus       149 ~  149 (458)
                      .
T Consensus        85 ~   85 (92)
T 1wxv_A           85 K   85 (92)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.45  E-value=5.9e-15  Score=130.06  Aligned_cols=71  Identities=30%  Similarity=0.415  Sum_probs=0.0

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |+|+|++++|++++++|+|++||.+||++|++..|+|+++|+|+|+|++|+|+.||+     ++++|||++|.+||
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG   71 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG   71 (189)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence            789999999999999999999999999999999999999999999999999999999     89999999999887

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.45  E-value=1e-13  Score=110.09  Aligned_cols=72  Identities=21%  Similarity=0.344  Sum_probs=66.4

Q ss_pred             CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEE
Q 012714           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (458)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~  148 (458)
                      ..|+|+|| .+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+| .+|++|+|.++++|||+.+
T Consensus        16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~   87 (95)
T 1v86_A           16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred             ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence            46889998 679999999999999999999999999999999999999999955 5999999999999998754

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.44  E-value=2.3e-13  Score=129.57  Aligned_cols=78  Identities=92%  Similarity=1.273  Sum_probs=72.8

Q ss_pred             ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEec
Q 012714          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      .+..|+|+||+.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|++|+|++|++||+++|.+
T Consensus       230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999999998864

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.43  E-value=1.1e-13  Score=131.84  Aligned_cols=74  Identities=96%  Similarity=1.299  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~   74 (458)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++++
T Consensus       234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999998753

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.42  E-value=1.8e-13  Score=134.18  Aligned_cols=78  Identities=31%  Similarity=0.572  Sum_probs=71.5

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHh---hcCCCCCceEEEEcCeecCCCCCccccCCCCCCEE-EEEEEec
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR  454 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~---~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i-~~~~~~~  454 (458)
                      ..|+|+||+.+|+.|.++|++++||.+||++|++   +.|+++++|+|+|+||.|+|+++|++|+|++|++| |++.|.+
T Consensus         6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~   85 (368)
T 1oqy_A            6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK   85 (368)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence            4699999999999999999999999999999999   56799999999999999999999999999999999 5555665


Q ss_pred             CC
Q 012714          455 GG  456 (458)
Q Consensus       455 ~g  456 (458)
                      ++
T Consensus        86 ~~   87 (368)
T 1oqy_A           86 AG   87 (368)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.42  E-value=7.4e-13  Score=104.29  Aligned_cols=79  Identities=16%  Similarity=0.384  Sum_probs=73.5

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      +..|.|.|++.+|+.+.+.|.+++++..|++..+++.|++++.++|+|+|+.|.+++|+++|++++||+|+++.+++||
T Consensus        15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG   93 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   93 (93)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999999999987

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.41  E-value=6.7e-13  Score=105.12  Aligned_cols=73  Identities=15%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             CCeEEEEEecCC--cEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCc---c----cCCCcchhhcccccccceeE
Q 012714           75 GGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHL  145 (458)
Q Consensus        75 ~~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~---~----L~d~~tL~~~~i~~~s~i~l  145 (458)
                      +.+.+.|+..+.  ..+++++++++||.+||++|+.++|+|+++|+|+|.|+   .    ++|+++|++|+|.+|++|||
T Consensus        13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl   92 (97)
T 2kj6_A           13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI   92 (97)
T ss_dssp             CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred             ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence            456777876544  47899999999999999999999999999999999983   3    48999999999999999998


Q ss_pred             EE
Q 012714          146 VL  147 (458)
Q Consensus       146 ~~  147 (458)
                      +-
T Consensus        93 vd   94 (97)
T 2kj6_A           93 ID   94 (97)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.40  E-value=7.1e-13  Score=104.97  Aligned_cols=72  Identities=15%  Similarity=0.207  Sum_probs=62.3

Q ss_pred             ceeEEEEcCCC--cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe---e----cCCCCCccccCCCCCCEEEEE
Q 012714          380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       380 ~~~i~vk~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~---~----L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      -+.+.|+....  ..++++++|++||++||++|+.++|+|+++|+|+|.|+   .    ++|+++|++|+|++|++||++
T Consensus        14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv   93 (97)
T 2kj6_A           14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII   93 (97)
T ss_dssp             CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred             eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence            35666665544  47899999999999999999999999999999999883   3    589999999999999999886


Q ss_pred             E
Q 012714          451 L  451 (458)
Q Consensus       451 ~  451 (458)
                      -
T Consensus        94 d   94 (97)
T 2kj6_A           94 D   94 (97)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.39  E-value=4.9e-13  Score=105.40  Aligned_cols=76  Identities=17%  Similarity=0.403  Sum_probs=73.2

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|.|++.+|+.+.+.|.+++++..||++++++.|+|+++|+|+|+|++|.++.|+++|+++++++|++++++.++
T Consensus         8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG   83 (94)
T 2io1_B            8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   83 (94)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred             EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999987654

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.39  E-value=7.2e-13  Score=106.17  Aligned_cols=81  Identities=15%  Similarity=0.335  Sum_probs=77.3

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      +..|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.++|+|+|+.|.+++|+++|++++||+|+++.+++||+
T Consensus        22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~  101 (104)
T 1wz0_A           22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP  101 (104)
T ss_dssp             SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C
Q 012714          458 F  458 (458)
Q Consensus       458 ~  458 (458)
                      .
T Consensus       102 ~  102 (104)
T 1wz0_A          102 S  102 (104)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.38  E-value=3.4e-13  Score=132.19  Aligned_cols=75  Identities=31%  Similarity=0.561  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhc---ccCCCCCceEEEEeeeeccCCCCcccccccccccc-ceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~---~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti-~l~~~~~~   75 (458)
                      |+|+|++++|++++++|.+++||.+||.+|++   +.|+|+++|+|+|.|+.|+|+++|.+|+|.++++| |++.+.++
T Consensus         8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~   86 (368)
T 1oqy_A            8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA   86 (368)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred             EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence            89999999999999999999999999999999   78899999999999999999999999999999998 66666543

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.35  E-value=2.6e-12  Score=102.87  Aligned_cols=78  Identities=13%  Similarity=0.317  Sum_probs=72.3

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      +..|+|.|++ +|+.+.+.|.+++++..|++..+++.|++++.++|+|+|+.|.+++|+++|++++||+|+++.+++||
T Consensus        29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence            3458999999 99999999999999999999999999999999999999999999999999999999999999999987

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.34  E-value=3.8e-12  Score=95.36  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=68.1

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      |+|.|++.+|+.+.+.|.+++++..|++..+++.|++++.++|+|+|+.|.+++|+++|++++||+|+++
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            7899999999999999999999999999999999999999999999999999999999999999999986

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.34  E-value=4.4e-13  Score=108.79  Aligned_cols=71  Identities=21%  Similarity=0.276  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCcEEEEEee-cCccHHHHHHHhhcccCCCCCceEEEEeee-----------e----ccCCCCccccccccc
Q 012714            1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE   64 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~-~~dtv~~~K~~i~~~~gip~~~q~l~~~g~-----------~----L~d~~tl~~y~i~~~   64 (458)
                      |+|+|++.+|+. .++|+ +++||.+||++|+++.|+|+++|+|+|.|+           .    ++|+++|.+|+|.++
T Consensus         8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G   86 (107)
T 1wf9_A            8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG   86 (107)
T ss_dssp             EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred             EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence            789999999966 89999 999999999999999999999999999988           4    588999999999999


Q ss_pred             cccceeEe
Q 012714           65 STLHLVLR   72 (458)
Q Consensus        65 sti~l~~~   72 (458)
                      +++||...
T Consensus        87 ~~L~l~~~   94 (107)
T 1wf9_A           87 SMVYLAYE   94 (107)
T ss_dssp             CEEECCCS
T ss_pred             CEEEEEeC
Confidence            99999764

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.32  E-value=1.6e-12  Score=105.46  Aligned_cols=72  Identities=22%  Similarity=0.303  Sum_probs=66.6

Q ss_pred             ceeEEEEcCCCcEEEEEec-CCCcHHHHHHHHHhhcCCCCCceEEEEcCe-----------e----cCCCCCccccCCCC
Q 012714          380 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK  443 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~-----------~----L~d~~tL~~~~i~~  443 (458)
                      .|.|+||+.+|+. .++|+ +++||.+||++|++++|+|+++|+|+|.|+           .    ++|+++|++|+|++
T Consensus         7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~   85 (107)
T 1wf9_A            7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH   85 (107)
T ss_dssp             CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred             eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence            4899999999976 79999 999999999999999999999999999998           4    58999999999999


Q ss_pred             CCEEEEEEE
Q 012714          444 ESTLHLVLR  452 (458)
Q Consensus       444 ~~~i~~~~~  452 (458)
                      |++||+...
T Consensus        86 G~~L~l~~~   94 (107)
T 1wf9_A           86 GSMVYLAYE   94 (107)
T ss_dssp             TCEEECCCS
T ss_pred             CCEEEEEeC
Confidence            999998654

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.32  E-value=1.7e-12  Score=103.04  Aligned_cols=70  Identities=20%  Similarity=0.275  Sum_probs=61.6

Q ss_pred             eEEEEcCCCc-EEEEEeecCccHHHHHHHhhcccCCCCCceEEEEee---ee----ccCCCCccccccccccccceeE
Q 012714            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL   71 (458)
Q Consensus         2 ~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g---~~----L~d~~tl~~y~i~~~sti~l~~   71 (458)
                      .|+|+..++. .+++++.+++||.+||++|+.+.|+|+++|+|+|.|   +.    ++|+++|.+|+|.+++++|++.
T Consensus         9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            4667765443 799999999999999999999999999999999987   43    5899999999999999999975

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.32  E-value=2e-12  Score=104.42  Aligned_cols=79  Identities=15%  Similarity=0.388  Sum_probs=76.2

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      +..|.|.|++.+|+.+.+.|.+++++..|++..+++.|+++++++|+|+|+.|.+++|+++|++++||+|+++..++||
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg  102 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG  102 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence            4569999999999999999999999999999999999999999999999999999999999999999999999999988

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.32  E-value=9.1e-12  Score=94.96  Aligned_cols=74  Identities=9%  Similarity=0.231  Sum_probs=70.3

Q ss_pred             ecCceeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714          377 LRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      .++.|+|.|++.+|+ .+.+.|.+++++..|++..+++.|+++++++|+|+|+.|.+++|+++|++++||+|+++
T Consensus         4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            356799999999996 89999999999999999999999999999999999999999999999999999999985

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.31  E-value=4.2e-12  Score=100.74  Aligned_cols=71  Identities=20%  Similarity=0.279  Sum_probs=62.4

Q ss_pred             eeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC---ee----cCCCCCccccCCCCCCEEEEEE
Q 012714          381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       381 ~~i~vk~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G---~~----L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      +.|+|+..... .+++++++++||.+||++|+..+|+|+++|||+|.|   +.    ++|+++|++|+|++|++||++-
T Consensus         8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            67777776543 689999999999999999999999999999999987   43    5899999999999999998753

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.28  E-value=7.5e-12  Score=97.81  Aligned_cols=76  Identities=17%  Similarity=0.403  Sum_probs=72.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |+|.|++.+|+.+.+.|.+++++..|+++..++.|+|+++++|+|+|++|.++.|+++|++.++++|++++++.++
T Consensus         6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg   81 (91)
T 2io0_B            6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   81 (91)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999877654

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.28  E-value=5.8e-12  Score=104.63  Aligned_cols=72  Identities=14%  Similarity=0.248  Sum_probs=63.1

Q ss_pred             CeEEEEcCCCc-EEEEEeecCccHHHHHHHhhcccCCCCCceEEEEee---e---e-ccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g---~---~-L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |.|+|+..++. .+++++.+++||.+||.+|+.+.|+|+++|+|+|.|   +   + ++|+++|.+|+|.++++||++..
T Consensus         7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~   86 (122)
T 1t0y_A            7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   86 (122)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence            35677776553 789999999999999999999999999999999988   3   3 47899999999999999999863

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.28  E-value=1.4e-11  Score=102.30  Aligned_cols=74  Identities=14%  Similarity=0.208  Sum_probs=64.6

Q ss_pred             CceeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC---ee----cCCCCCccccCCCCCCEEEEE
Q 012714          379 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       379 ~~~~i~vk~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G---~~----L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      ..+.|+|+...+. .+++++++++||.+||++|+..+|+|+++|||+|.|   +.    ++|+++|++|+|++|++||++
T Consensus         5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv   84 (122)
T 1t0y_A            5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   84 (122)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence            4577888876553 688999999999999999999999999999999987   42    589999999999999999987


Q ss_pred             EE
Q 012714          451 LR  452 (458)
Q Consensus       451 ~~  452 (458)
                      -.
T Consensus        85 d~   86 (122)
T 1t0y_A           85 DV   86 (122)
T ss_dssp             EC
T ss_pred             eC
Confidence            53

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.23  E-value=1.4e-11  Score=92.32  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccccccccccee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~   70 (458)
                      |+|.|++.+|+.+.+.|.+++++..|+++..++.|+|+++++++|+|++|.++.|+++|++.++++|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            6899999999999999999999999999999999999999999999999999999999999999999985

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.21  E-value=2.4e-11  Score=95.54  Aligned_cols=75  Identities=16%  Similarity=0.379  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|.|++.+|+.+.+.|.+++++..|+.+..++.|+|+++++|+|+|+.|.++.|+++|++.++++|++++++.+
T Consensus        18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G   92 (93)
T 2d07_B           18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG   92 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred             EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999987654

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.21  E-value=1.4e-11  Score=95.86  Aligned_cols=70  Identities=24%  Similarity=0.358  Sum_probs=63.1

Q ss_pred             eeEEEEcCCCcEEEEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEc--CeecC---CCCCccccCCCCCCEEEEEE
Q 012714          381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~--G~~L~---d~~tL~~~~i~~~~~i~~~~  451 (458)
                      |+|+||+.+|+. .+. +++++||.+||+.|+++.|+++++|+|+|+  |+.|.   |+++|++|||++|++||+..
T Consensus         1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~   76 (86)
T 2kzr_A            1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE   76 (86)
T ss_dssp             CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred             CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence            789999999975 488 999999999999999999999999999997  47874   68899999999999998753

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.18  E-value=1.3e-11  Score=96.01  Aligned_cols=71  Identities=24%  Similarity=0.371  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCcEEEEE-eecCccHHHHHHHhhcccCCCCCceEEEEe--eeecc---CCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~-v~~~dtv~~~K~~i~~~~gip~~~q~l~~~--g~~L~---d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |+|.|++.+|+.. ++ +.+++||.+||++|+++.|+|+++|+|.|+  ++.|+   ++.+|++|++.+++++|+.-.
T Consensus         1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            8999999999764 77 999999999999999999999999999997  47774   688999999999999998643

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.18  E-value=2.3e-11  Score=117.55  Aligned_cols=76  Identities=21%  Similarity=0.429  Sum_probs=68.2

Q ss_pred             CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE---ecCcccCCCcchhhcccccccceeEEEEeec
Q 012714           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (458)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~  151 (458)
                      ..|+|+|| .+|+.+++++++++||.+||++|++++|+|+++|+|+   |+|+.|+|+.+|++|+|++|++|+|+.+...
T Consensus         4 ~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~   82 (320)
T 3shq_A            4 KEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA   82 (320)
T ss_dssp             CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred             ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence            35789999 6899999999999999999999999999999999999   8999999999999999999999999876543

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.14  E-value=2.1e-10  Score=87.30  Aligned_cols=73  Identities=10%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             cCCeEEEEEecCCc-EEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEE
Q 012714           74 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (458)
Q Consensus        74 ~~~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~  146 (458)
                      ...|+|+|++.+|+ .+.+.|.+++++..|++.++++.|+|+++++|+|.|+.|.++.|.++|++.+|++|++.
T Consensus         5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            35689999999996 89999999999999999999999999999999999999999999999999999999874

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.14  E-value=4.7e-11  Score=115.37  Aligned_cols=73  Identities=22%  Similarity=0.436  Sum_probs=66.3

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEE---EcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li---~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      ..|+|+|+. .|+.++++|++++||++||++|++.+|+|+++|+|+   |+|+.|+|+.+|++|+|++|++|+|+-.
T Consensus         4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs   79 (320)
T 3shq_A            4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS   79 (320)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred             ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence            457899996 699999999999999999999999999999999999   8999999999999999999999988754

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.12  E-value=1e-10  Score=93.66  Aligned_cols=79  Identities=15%  Similarity=0.346  Sum_probs=74.3

Q ss_pred             cceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCCe
Q 012714          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  229 (458)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~  229 (458)
                      ..|.|.|+..+|+.+.+.|.+++++..|+...+++.|+|++.++|+|+|+.|.++.|+++|++.+|++|++++++.||.
T Consensus        23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~  101 (104)
T 1wz0_A           23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP  101 (104)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred             CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            3577889988999999999999999999999999999999999999999999999999999999999999999888763

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.12  E-value=1.4e-10  Score=93.52  Aligned_cols=80  Identities=15%  Similarity=0.395  Sum_probs=74.6

Q ss_pred             cCCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeecce
Q 012714           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (458)
Q Consensus        74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~~~  153 (458)
                      ...|.|+|++.+|+.+.+.|.+++++..|++.++++.|+|+++++|+|.|+.|.++.|.++|++.+|++|+++....++.
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~  103 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL  103 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999998776654

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.11  E-value=1.7e-10  Score=92.41  Aligned_cols=77  Identities=13%  Similarity=0.320  Sum_probs=71.0

Q ss_pred             cceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      ..|.|.|+. +|+.+.+.|.+++++..|++..+++.|++++.++|+|+|+.|.++.|.++|++.+|++|++++++.||
T Consensus        30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence            457888999 99999999999999999999999999999999999999999999999999999999999999988765

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=99.04  E-value=1.2e-09  Score=88.30  Aligned_cols=78  Identities=17%  Similarity=0.376  Sum_probs=72.9

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      .+.++|.|++.+|....|.|.+++++..|++..+++.|++++.++|+|+|+.|.+++|.+++++++||+|+++..+-|
T Consensus        38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G  115 (115)
T 3kyd_D           38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG  115 (115)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred             CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence            356889999999999999999999999999999999999999999999999999999999999999999999887654

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.96  E-value=2.6e-09  Score=84.85  Aligned_cols=74  Identities=16%  Similarity=0.217  Sum_probs=62.8

Q ss_pred             CceeEEEEc---CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC-------eec-CCCCCccccCCCCCCEE
Q 012714          379 GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTL  447 (458)
Q Consensus       379 ~~~~i~vk~---~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G-------~~L-~d~~tL~~~~i~~~~~i  447 (458)
                      +.++|+|+.   .+|+.++..+.+++||.+||.+|+..+|+|+..|+|.|.+       ..| +|..+|++|++++|++|
T Consensus         8 ~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I   87 (97)
T 1wjn_A            8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL   87 (97)
T ss_dssp             CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred             ccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence            345666764   4678889999999999999999999999999999999973       224 67889999999999999


Q ss_pred             EEEEE
Q 012714          448 HLVLR  452 (458)
Q Consensus       448 ~~~~~  452 (458)
                      |+...
T Consensus        88 ~V~d~   92 (97)
T 1wjn_A           88 LVRWS   92 (97)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            98654

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.92  E-value=1.6e-09  Score=93.94  Aligned_cols=99  Identities=12%  Similarity=0.266  Sum_probs=74.3

Q ss_pred             CCcccccccCCCeEEEEEe--ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCC
Q 012714          358 RTLADYNIQKESTLHLVLR--LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT  435 (458)
Q Consensus       358 ~~l~~y~I~~~~~l~l~~~--~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~t  435 (458)
                      .+|++-+...+..--.-+.  ..+.++|.|+. +|..+.|.|.+++++..|++..+++.|+++..++++|+|+.|.+++|
T Consensus        33 ~~~~~~~~~~~~~~d~KP~~dp~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddT  111 (207)
T 3tix_A           33 GSLQDSEVNQEAKPEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQT  111 (207)
T ss_dssp             ----------------------CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCC
T ss_pred             ccccccccCCCCCCCCCCCCCCCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCC
Confidence            3455544443333333222  24457888874 89999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCEEEEEEEecCCC
Q 012714          436 LADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       436 L~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      .+++++++||+|+++..+.||.
T Consensus       112 PeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A          112 PEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             TTTTTCCTTEEEEECCCCCTTG
T ss_pred             HHHcCCCCCCEEEEEEeccCCC
Confidence            9999999999999999999985

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.89  E-value=6e-09  Score=92.73  Aligned_cols=79  Identities=13%  Similarity=0.310  Sum_probs=74.0

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      ...++|.|+. +|+...+.|.+++++..|++..+++.|+++.++|++|+|+.|.+++|.+++++++||+|+++..+.||.
T Consensus        27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~  105 (200)
T 3pge_A           27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG  105 (200)
T ss_dssp             CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred             CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence            3457888875 899999999999999999999999999999999999999999999999999999999999999998884

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.86  E-value=6.3e-09  Score=82.61  Aligned_cols=73  Identities=16%  Similarity=0.224  Sum_probs=62.3

Q ss_pred             CeEEEEEe---cCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecC-------ccc-CCCcchhhccccccccee
Q 012714           76 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLH  144 (458)
Q Consensus        76 ~~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G-------~~L-~d~~tL~~~~i~~~s~i~  144 (458)
                      .+.|+|+.   .+|..+...+++++||.+||.+|+..+|+|+..|+|.|.+       ..| +|..+|++|++.+|++||
T Consensus         9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~   88 (97)
T 1wjn_A            9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL   88 (97)
T ss_dssp             EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred             cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence            35666764   4678899999999999999999999999999999999873       124 678999999999999999


Q ss_pred             EEEE
Q 012714          145 LVLR  148 (458)
Q Consensus       145 l~~~  148 (458)
                      +...
T Consensus        89 V~d~   92 (97)
T 1wjn_A           89 VRWS   92 (97)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            8753

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=98.84  E-value=1.2e-06  Score=90.64  Aligned_cols=332  Identities=14%  Similarity=0.163  Sum_probs=216.1

Q ss_pred             cEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeee--------ccC-----CCCccccccccccccceeEee----
Q 012714           11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LED-----GRTLADYNIQKESTLHLVLRL----   73 (458)
Q Consensus        11 ~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~--------L~d-----~~tl~~y~i~~~sti~l~~~~----   73 (458)
                      ...+++|....|+.++|+.|.+..|+|+++|||+.....        +.+     +.++.++.- +.+.+.+.+..    
T Consensus        36 ~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~  114 (530)
T 2ylm_A           36 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPE  114 (530)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHH
T ss_pred             CcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccc
Confidence            344689999999999999999999999999999986543        111     112222211 22233333311    


Q ss_pred             -------------cCCeEEEEEecCC--cEEE----EEEeCCCCHHHHHHHHhHHhCCCCCCeEEEec------CcccC-
Q 012714           74 -------------RGGMQIFVKTLTG--KTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-  127 (458)
Q Consensus        74 -------------~~~~~i~vk~~~g--~~~~----l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------G~~L~-  127 (458)
                                   .+.+-|++|..+-  +++.    +.|+.+++|.++-..|.++.|+|++.-..+|.      ...|+ 
T Consensus       115 ~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~  194 (530)
T 2ylm_A          115 LAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQD  194 (530)
T ss_dssp             HHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCC
T ss_pred             cCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccc
Confidence                         1237788887643  3333    56899999999999999999999988777765      24466 


Q ss_pred             CCcchhhc--ccccccceeEEEEee------------------cceeeEEEe---ccCceEeeecCCCCcHHHHHHHHHH
Q 012714          128 DGRTLADY--NIQKESTLHLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQD  184 (458)
Q Consensus       128 d~~tL~~~--~i~~~s~i~l~~~~~------------------~~~~i~v~~---~~g~~~~~~v~~~~tV~~LK~~I~~  184 (458)
                      .+.|+.+.  .+.+|+.|..-....                  ..+.|.++.   .+...+.++++...|-.+|-++|++
T Consensus       195 ~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~  274 (530)
T 2ylm_A          195 YDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQ  274 (530)
T ss_dssp             SSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHH
T ss_pred             ccccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence            57899999  999999987655422                  123455553   2356699999999999999999999


Q ss_pred             HhCCCCCCeEEEe----cCe---ec--cCCcccccccc----CCCCEEEEEEEe--------cCCeEEEEEccCCc--eE
Q 012714          185 KEGIPPDQQRLIF----AGK---QL--EDGRTLADYNI----QKESTLHLVLRL--------RGGMQIFVKTLTGK--TI  241 (458)
Q Consensus       185 ~~gip~~~q~L~~----~g~---~L--~d~~tL~~y~i----~~~s~i~l~~~~--------~~~~~I~V~~~~g~--~i  241 (458)
                      +.+++|+..||+-    .|.   .+  ..+.+|.+.=-    ..-+.+...+-.        ...+.|+......+  .+
T Consensus       275 ~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~  354 (530)
T 2ylm_A          275 RLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEI  354 (530)
T ss_dssp             HHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEE
T ss_pred             HhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEE
Confidence            9999999988862    122   11  22344443211    111233322110        12344543333322  55


Q ss_pred             EEeecccchHHHHHHHHhhhcCCCC---CceEEE--ecCc---ccCCCCcccccccCCCCeEEEEEeec--------Cce
Q 012714          242 TLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------GGM  305 (458)
Q Consensus       242 ~~~v~~~dtV~~lK~~i~~~~gip~---~~q~L~--~~g~---~l~d~~tL~~y~I~~~~ti~l~~~~~--------~~~  305 (458)
                      .+-+..+.||++|-+.+..+.+++.   ...|+.  ++++   .+.++.++...+=....++++.....        +.+
T Consensus       355 ~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~  434 (530)
T 2ylm_A          355 TLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEM  434 (530)
T ss_dssp             EECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEE
T ss_pred             EEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcE
Confidence            6667779999999999999999974   446654  5555   35666666544332244555433211        111


Q ss_pred             eEEE----E---ccCCceEEEeecCCCcHHHHHHhhhcccCCCCC
Q 012714          306 QIFV----K---TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD  343 (458)
Q Consensus       306 ~i~v----~---~~~g~~~~l~v~~~~ti~~lK~~I~~~~~i~~~  343 (458)
                      -|.|    |   ..-|..+.+.|.++.|..++|++|+.++|++..
T Consensus       435 li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k  479 (530)
T 2ylm_A          435 LVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK  479 (530)
T ss_dssp             EEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred             EEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence            1222    1   124678899999999999999999999998853

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=98.80  E-value=1.2e-05  Score=82.95  Aligned_cols=346  Identities=12%  Similarity=0.170  Sum_probs=224.2

Q ss_pred             EEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE-ecCcc-------cC-----CCcchhhcccccccceeEEEEee-----
Q 012714           89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ-------LE-----DGRTLADYNIQKESTLHLVLRLR-----  150 (458)
Q Consensus        89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~~-------L~-----d~~tL~~~~i~~~s~i~l~~~~~-----  150 (458)
                      .++.|..++|+.+||+.+++..|+|+++|||- +..+.       +.     .+.++.++.- .++.+.+.+...     
T Consensus        38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~  116 (530)
T 2ylm_A           38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA  116 (530)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred             ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence            35788999999999999999999999999974 32111       11     1223333321 233444444210     


Q ss_pred             ------------cceeeEEEecc--CceE----eeecCCCCcHHHHHHHHHHHhCCCCCCeEEEec------Ceecc-CC
Q 012714          151 ------------GGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG  205 (458)
Q Consensus       151 ------------~~~~i~v~~~~--g~~~----~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~------g~~L~-d~  205 (458)
                                  ..+-|++|..+  .++.    .+.++.+++|++|-..|.++.|+|++.-...|.      -..|+ .+
T Consensus       117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~  196 (530)
T 2ylm_A          117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD  196 (530)
T ss_dssp             TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred             CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence                        13678888664  3333    267889999999999999999999987665553      23466 57


Q ss_pred             cccccc--ccCCCCEEEEEEEec-C---C--------------eEEEEEc---cCCceEEEeecccchHHHHHHHHhhhc
Q 012714          206 RTLADY--NIQKESTLHLVLRLR-G---G--------------MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE  262 (458)
Q Consensus       206 ~tL~~y--~i~~~s~i~l~~~~~-~---~--------------~~I~V~~---~~g~~i~~~v~~~dtV~~lK~~i~~~~  262 (458)
                      .|+.+.  ++.+|+.|-.-.... .   .              +.|..+.   .+...+.++++...|-.+|.+.+.+..
T Consensus       197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l  276 (530)
T 2ylm_A          197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL  276 (530)
T ss_dssp             SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            899999  999999986554432 1   0              2232332   335679999999999999999999999


Q ss_pred             CCCCCceEEEec----Ccc-----cCCCCcccccc----cCCCCeEEEEEee--------cCceeEEEEccCC--ceEEE
Q 012714          263 GIPPDQQRLIFA----GKQ-----LEDGRTLADYN----IQKESTLHLVLRL--------RGGMQIFVKTLTG--KTITL  319 (458)
Q Consensus       263 gip~~~q~L~~~----g~~-----l~d~~tL~~y~----I~~~~ti~l~~~~--------~~~~~i~v~~~~g--~~~~l  319 (458)
                      +++|+.-||.-.    +.+     ...+.+|.+.=    -..-+.++.....        ...+.|+.-....  ..+.+
T Consensus       277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l  356 (530)
T 2ylm_A          277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITL  356 (530)
T ss_dssp             TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEE
T ss_pred             CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEE
Confidence            999999887622    221     22234443321    1112445544311        1224444322221  36788


Q ss_pred             eecCCCcHHHHHHhhhcccCCCC---CCeeEE--ecC---eecCCCCCcccccccCCCeEEEEEeecC--------ceeE
Q 012714          320 EVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAG---KQLEDGRTLADYNIQKESTLHLVLRLRG--------GMQI  383 (458)
Q Consensus       320 ~v~~~~ti~~lK~~I~~~~~i~~---~~q~L~--~~g---~~L~~~~~l~~y~I~~~~~l~l~~~~~~--------~~~i  383 (458)
                      .|.+..||+||-..++.+.+++.   ...+|.  +++   ++++++.+|...+=....++++-....+        .+-|
T Consensus       357 ~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li  436 (530)
T 2ylm_A          357 YPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLV  436 (530)
T ss_dssp             CCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEE
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEE
Confidence            88999999999999999999873   334432  344   6788888887654333555555443222        2334


Q ss_pred             EEE----cC---CCcEEEEEecCCCcHHHHHHHHHhhcCCCCC---ceE--EEEcCe--ecCCCCC
Q 012714          384 FVK----TL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPD---QQR--LIFAGK--QLEDGRT  435 (458)
Q Consensus       384 ~vk----~~---~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~---~q~--Li~~G~--~L~d~~t  435 (458)
                      .|-    ..   -|..|.+.|.++.|+.++|++|.++.|++.+   .-+  ++-.++  -|+|+..
T Consensus       437 ~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~  502 (530)
T 2ylm_A          437 TVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEY  502 (530)
T ss_dssp             EEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTC
T ss_pred             EEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccc
Confidence            441    11   2667899999999999999999999998754   334  343444  4666543

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.75  E-value=1.1e-09  Score=96.29  Aligned_cols=81  Identities=12%  Similarity=0.265  Sum_probs=2.0

Q ss_pred             ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      ..+.|+|.| ..+|+...|.|.+++++..|++..+++.|++++.+|++|+|+.+.+++|.+++++++||+|+++..+.||
T Consensus        18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG   96 (227)
T 3v7o_A           18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   96 (227)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence            345688888 7789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 012714          457 EF  458 (458)
Q Consensus       457 ~~  458 (458)
                      .+
T Consensus        97 ~~   98 (227)
T 3v7o_A           97 LT   98 (227)
T ss_dssp             CC
T ss_pred             ch
Confidence            64

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.74  E-value=4.3e-08  Score=79.11  Aligned_cols=75  Identities=16%  Similarity=0.375  Sum_probs=70.1

Q ss_pred             cceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEe
Q 012714          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (458)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~  225 (458)
                      ..+.|.|+..+|..+.+.|.+++++..|+...+++.|++++.++|.|+|+.|.++.|.+++++.+|++|+++...
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q  113 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ  113 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence            346778888889999999999999999999999999999999999999999999999999999999999998764

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.62  E-value=2.5e-07  Score=67.65  Aligned_cols=71  Identities=15%  Similarity=0.323  Sum_probs=64.5

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCC-ceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~-~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      +.+..++.....+.+.|.++.+|.+|.+.-+++.|++++ ..+|.|.|..|..++++++|.+.+||.|.+++
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            345556666677899999999999999999999999998 99999999999999999999999999999875

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.57  E-value=1.5e-07  Score=83.62  Aligned_cols=78  Identities=13%  Similarity=0.300  Sum_probs=72.1

Q ss_pred             ecceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       150 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      ...+.|.|+ .+|+.+.+.+.+++++..|+...+++.|+|++++||.|+|+.|.++.|.+++++.+|++|+++..+.||
T Consensus        27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg  104 (200)
T 3pge_A           27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  104 (200)
T ss_dssp             CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred             CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence            344677776 488899999999999999999999999999999999999999999999999999999999999998776

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.52  E-value=1.4e-07  Score=81.98  Aligned_cols=78  Identities=12%  Similarity=0.290  Sum_probs=72.5

Q ss_pred             cceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCCe
Q 012714          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  229 (458)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~  229 (458)
                      ..+.|.|+ .+|..+.+.|.+++++..|++..+++.|+|+..++|.|+|+.|.++.|.+++++.+|++|+++....||.
T Consensus        56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A           56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred             CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            34667776 4888999999999999999999999999999999999999999999999999999999999999998884

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.47  E-value=7.7e-07  Score=69.74  Aligned_cols=73  Identities=12%  Similarity=0.273  Sum_probs=68.0

Q ss_pred             cCceeEEEEcCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714          378 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       378 ~~~~~i~vk~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      ++.+.|.|+..+|. .+.+.|.+++++..|....+++.|++++..+++|+|..|..++|.+++++++||+|.++
T Consensus        23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            45688889999985 78999999999999999999999999999999999999999999999999999999874

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.37  E-value=2.1e-07  Score=70.63  Aligned_cols=70  Identities=14%  Similarity=0.197  Sum_probs=60.5

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCee-----cCCCCCccccCCCCCCEEEE
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-----LEDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~-----L~d~~tL~~~~i~~~~~i~~  449 (458)
                      .+|.|.||+.+|. +.+++++++|+.+|+++|+++.+++++.|.+.++-..     +.++.+|+++|++.||.|++
T Consensus         3 ~~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l   77 (80)
T 2pjh_A            3 ESIIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFL   77 (80)
T ss_dssp             CCCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC
T ss_pred             CcEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEE
Confidence            4689999999985 4789999999999999999999999888887766554     34788999999999999975

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.36  E-value=1.1e-06  Score=79.78  Aligned_cols=82  Identities=12%  Similarity=0.295  Sum_probs=74.9

Q ss_pred             eecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       376 ~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      ...+.+.|.|++ +|+...+.+.+++++..|++..+++.|+++++++++|.|+.+.+++|..++.++++|+|.+..++.|
T Consensus        17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G   95 (209)
T 3uf8_A           17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG   95 (209)
T ss_dssp             -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred             CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence            345567888887 7888899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 012714          456 GEF  458 (458)
Q Consensus       456 g~~  458 (458)
                      |.+
T Consensus        96 g~t   98 (209)
T 3uf8_A           96 GST   98 (209)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            853

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.33  E-value=6.5e-08  Score=85.16  Aligned_cols=82  Identities=12%  Similarity=0.304  Sum_probs=1.8

Q ss_pred             EeecceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecC
Q 012714          148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (458)
Q Consensus       148 ~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~  227 (458)
                      .+...|.|.| ..+|..+.+.|.+++++..|++..+++.|+|++.++|.|+|+.+.++.|.+++++.+|++|+++....|
T Consensus        17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G   95 (227)
T 3v7o_A           17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG   95 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence            3445577888 678899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CeE
Q 012714          228 GMQ  230 (458)
Q Consensus       228 ~~~  230 (458)
                      |..
T Consensus        96 G~~   98 (227)
T 3v7o_A           96 GLT   98 (227)
T ss_dssp             CCC
T ss_pred             Cch
Confidence            853

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.30  E-value=4.2e-06  Score=61.20  Aligned_cols=70  Identities=16%  Similarity=0.316  Sum_probs=62.6

Q ss_pred             eeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCC-CeEEEecCeeccCCccccccccCCCCEEEEEE
Q 012714          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (458)
Q Consensus       154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~-~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~  223 (458)
                      .+..+......+.+.++++.+|..|-+.-+.+.|||++ ..+|.|.|..|+.+.++++|++.+|+.|.+.+
T Consensus        11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            34455555567889999999999999999999999999 99999999999999999999999999998764

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=98.29  E-value=4.5e-06  Score=64.13  Aligned_cols=73  Identities=14%  Similarity=0.262  Sum_probs=67.7

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      ..++|.|+. .|....|.+..++....|.+..+.+.|++++..|++|.|..+.+++|.+++++++||+|.+++-
T Consensus        20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred             CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence            347888885 6888899999999999999999999999999999999999999999999999999999998764

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.22  E-value=1.2e-06  Score=66.53  Aligned_cols=70  Identities=14%  Similarity=0.228  Sum_probs=58.3

Q ss_pred             ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCee---c--cCCccccccccCCCCEEEEE
Q 012714          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV  222 (458)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~---L--~d~~tL~~y~i~~~s~i~l~  222 (458)
                      .|.|.|+..+| .+.+++++++|+.+|+++|++.+++|++.|.+.++...   |  .++.+|+++||++|+.|++.
T Consensus         4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            47788887776 67788999999999999999999999998887754333   3  47889999999999999764

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=98.18  E-value=2.1e-07  Score=89.93  Aligned_cols=80  Identities=13%  Similarity=0.292  Sum_probs=0.4

Q ss_pred             ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      ..+.++|.|++ +|+...+.|.+++++..|++..+++.|++++.++++|+|+.|.+++|.+++++++||+|+++..+.||
T Consensus        18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~   96 (360)
T 3ix6_A           18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   96 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence            34557888887 67888999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 012714          457 E  457 (458)
Q Consensus       457 ~  457 (458)
                      .
T Consensus        97 ~   97 (360)
T 3ix6_A           97 M   97 (360)
T ss_dssp             C
T ss_pred             H
Confidence            3

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.18  E-value=4.2e-06  Score=64.69  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=45.3

Q ss_pred             cCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeecc--CCCCccccc
Q 012714            7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYN   60 (458)
Q Consensus         7 ~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~--d~~tl~~y~   60 (458)
                      ...+..+++.|.+.+||..+|++|+++.|||+.+|+|+|.|+.|.  .++....|.
T Consensus        20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p   75 (94)
T 4efo_A           20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP   75 (94)
T ss_dssp             TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred             cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence            346788999999999999999999999999999999999998864  334444443

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.11  E-value=0.00013  Score=72.17  Aligned_cols=134  Identities=24%  Similarity=0.353  Sum_probs=107.5

Q ss_pred             CceEeeecCCCCcHHHHHHHHHHHhC----CCCCCeEEEe------cCeeccCCccccccccCCCCEEEEEEEecCCeEE
Q 012714          162 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI  231 (458)
Q Consensus       162 g~~~~~~v~~~~tV~~LK~~I~~~~g----ip~~~q~L~~------~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~~I  231 (458)
                      +-+.++.+++++||.+.-..|.++..    .++++.-|+.      .|.-|++.+||..|++++|+.+....+.   +.+
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~---~~~   88 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ---RPL   88 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---EEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---eEE
Confidence            56678999999999999999988774    3678888886      4566999999999999999988776544   578


Q ss_pred             EEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc-eEEEecC---------cccCCCCcccccccCCCCeEEEE
Q 012714          232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG---------KQLEDGRTLADYNIQKESTLHLV  298 (458)
Q Consensus       232 ~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~-q~L~~~g---------~~l~d~~tL~~y~I~~~~ti~l~  298 (458)
                      .|..++|....+.++++.|+.++-..++++.|+.... +-|.+..         .-++..+++...+..+..++++.
T Consensus        89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr  165 (371)
T 3ivf_A           89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR  165 (371)
T ss_dssp             EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred             EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence            8889999999999999999999999999999987665 5565532         12555677777776666666554

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.01  E-value=2e-05  Score=61.66  Aligned_cols=72  Identities=13%  Similarity=0.278  Sum_probs=65.6

Q ss_pred             cceeeEEEeccCc-eEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEE
Q 012714          151 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (458)
Q Consensus       151 ~~~~i~v~~~~g~-~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~  222 (458)
                      ..+.|.|+..+|. .+.+.|.++++...|....+++.|++++..+|.|+|..+..+.|.+++++.+|++|.+.
T Consensus        24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            3466777777884 78999999999999999999999999999999999999999999999999999999875

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=97.99  E-value=0.00024  Score=70.19  Aligned_cols=136  Identities=24%  Similarity=0.350  Sum_probs=107.8

Q ss_pred             CceEEEeecCCCcHHHHHHhhhcccC----CCCCCeeEEe------cCeecCCCCCcccccccCCCeEEEEEeecCceeE
Q 012714          314 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI  383 (458)
Q Consensus       314 g~~~~l~v~~~~ti~~lK~~I~~~~~----i~~~~q~L~~------~g~~L~~~~~l~~y~I~~~~~l~l~~~~~~~~~i  383 (458)
                      +-+-+|...|+.||.++-.+|.++..    -+++..-|..      .|+=|.++++|..|++++++.++.-.   .++.+
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~   88 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK---KQRPL   88 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE---CEEEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC---ceeEE
Confidence            56679999999999999999988764    3465666776      25668899999999999999998874   47899


Q ss_pred             EEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-CCCceEEEEcC---------eecCCCCCccccCCCCCCEEEEEEE
Q 012714          384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       384 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~~G---------~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      .|..++|+...+.|++..|+.++-+.++.+.|+ +.+..-|.+..         .-|+..+++.+.+..+...+++.+|
T Consensus        89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK  167 (371)
T 3ivf_A           89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK  167 (371)
T ss_dssp             EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence            999999999999999999999999999999997 44555565532         2345566777766666666655444

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.97  E-value=1.8e-05  Score=60.21  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=69.5

Q ss_pred             cCCeEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEEEEee
Q 012714          226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  301 (458)
Q Consensus       226 ~~~~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~~~~  301 (458)
                      .+||.+.|-..+++..++.|.++.++.++-+..|+++|+.++++.|.|+++.++-+.+++.-|+.+|+.+.|+...
T Consensus         7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s   82 (90)
T 2al3_A            7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS   82 (90)
T ss_dssp             ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred             CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence            3578899999999999999999999999999999999999999999999999999999999999999999998644

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=97.97  E-value=1.8e-05  Score=61.15  Aligned_cols=53  Identities=21%  Similarity=0.312  Sum_probs=45.1

Q ss_pred             cCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCccc--CCCcchhhcc
Q 012714           84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYN  136 (458)
Q Consensus        84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L--~d~~tL~~~~  136 (458)
                      .++..+.+.+.+++||..+|++|++++|||+++|+|+|.|+.|  +.+.....|-
T Consensus        21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p   75 (94)
T 4efo_A           21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP   75 (94)
T ss_dssp             TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred             ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence            4677889999999999999999999999999999999999765  4455555554

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.86  E-value=5.5e-05  Score=68.39  Aligned_cols=89  Identities=15%  Similarity=0.328  Sum_probs=76.3

Q ss_pred             EeecceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecC
Q 012714          148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (458)
Q Consensus       148 ~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~  227 (458)
                      .+...+.|.|.. +|..+.+.+.++++...|++..+++.|+|+++++|.|.|+.+.++.|..+..+.++++|.+.....+
T Consensus        17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G   95 (209)
T 3uf8_A           17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG   95 (209)
T ss_dssp             -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred             CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence            344556777776 6778899999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CeEEEEEccCC
Q 012714          228 GMQIFVKTLTG  238 (458)
Q Consensus       228 ~~~I~V~~~~g  238 (458)
                      |..+ +.+.+|
T Consensus        96 g~t~-~~~~sG  105 (209)
T 3uf8_A           96 GSTV-VTTESG  105 (209)
T ss_dssp             CCCC-EECTTS
T ss_pred             cccc-cCCCCc
Confidence            7643 344444

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.83  E-value=2.4e-06  Score=85.22  Aligned_cols=78  Identities=13%  Similarity=0.323  Sum_probs=0.0

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      +.+.|.|++ +|....|.|.++++...|++..+++.|+++..++++|+|+.|.+++|.+++++++||+|.++..+.||.
T Consensus        29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~  106 (389)
T 4da1_A           29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE  106 (389)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence            346777777 677888999999999999999999999999999999999999999999999999999999999999884

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.83  E-value=2.4e-06  Score=82.49  Aligned_cols=82  Identities=13%  Similarity=0.327  Sum_probs=1.3

Q ss_pred             EeecceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecC
Q 012714          148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (458)
Q Consensus       148 ~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~  227 (458)
                      .+...+.|.|+. +|..+.+.|.+++++..|++..+++.|++++.++|.|+|+.+.++.|.+++++++|++|++.....|
T Consensus        17 ~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g   95 (360)
T 3ix6_A           17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG   95 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence            344556777776 6788899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CeE
Q 012714          228 GMQ  230 (458)
Q Consensus       228 ~~~  230 (458)
                      |+.
T Consensus        96 ~~~   98 (360)
T 3ix6_A           96 GMR   98 (360)
T ss_dssp             -CH
T ss_pred             hHH
Confidence            865

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.75  E-value=0.00011  Score=55.95  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=69.1

Q ss_pred             ecceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEe
Q 012714          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (458)
Q Consensus       150 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~  225 (458)
                      .++|.|.|-..+++...+.|.|++++.++-+.-++++|+.+++..|.|+++.++-+.++.-.|+.+|+.+.|+...
T Consensus         7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s   82 (90)
T 2al3_A            7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS   82 (90)
T ss_dssp             ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred             CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence            3568899999999999999999999999999999999999999999999999999999999999999999987643

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.65  E-value=0.00021  Score=54.90  Aligned_cols=71  Identities=14%  Similarity=0.290  Sum_probs=65.1

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEE
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~  224 (458)
                      +.|.|+ .+|....+.+..++....|....+++.|++++..++.|.|..+.++.|.++.++.+|++|.+++.
T Consensus        22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred             EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence            556676 36788999999999999999999999999999999999999999999999999999999998763

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.60  E-value=0.00011  Score=60.22  Aligned_cols=70  Identities=27%  Similarity=0.386  Sum_probs=58.7

Q ss_pred             EEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCC-------------------------------------CeEEE
Q 012714           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI  120 (458)
Q Consensus        78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-------------------------------------~q~L~  120 (458)
                      .+.|++++|...++.|+.+.||.+++..|.++.|++..                                     +|+|.
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            58899999999999999999999999999999999854                                     33442


Q ss_pred             e--cCcccCCCcchhhcccccccceeEEE
Q 012714          121 F--AGKQLEDGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus       121 ~--~G~~L~d~~tL~~~~i~~~s~i~l~~  147 (458)
                      .  .+..|+++++|.++||.+++++.|.-
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr  121 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLLRR  121 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence            2  12567889999999999999977654

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.55  E-value=8.7e-05  Score=60.83  Aligned_cols=71  Identities=27%  Similarity=0.393  Sum_probs=58.5

Q ss_pred             eeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCC-------------------------------------CeEEE
Q 012714          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI  196 (458)
Q Consensus       154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~-------------------------------------~q~L~  196 (458)
                      .+.|++++|...++.|+.+.||.+++..|+.+.||+..                                     .++|.
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            47899999999999999999999999999999999844                                     22232


Q ss_pred             e--cCeeccCCccccccccCCCCEEEEEEE
Q 012714          197 F--AGKQLEDGRTLADYNIQKESTLHLVLR  224 (458)
Q Consensus       197 ~--~g~~L~d~~tL~~y~i~~~s~i~l~~~  224 (458)
                      .  .+..|++++||.++||.+++++.|..+
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence            1  235678899999999999999876543

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.43  E-value=0.00034  Score=52.49  Aligned_cols=69  Identities=14%  Similarity=0.238  Sum_probs=58.5

Q ss_pred             eeEEEEc--CCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-----CceEEEEcCeecCCCCCccccCCCCCCEEEE
Q 012714          381 MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL  449 (458)
Q Consensus       381 ~~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~-----~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~  449 (458)
                      ++|++..  ..++.+.++++...||..|++.+.+.++++.     ...+..-.|..|.+++.|+||+|.+||.+.+
T Consensus         5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            5677765  5789999999999999999999999998643     2455666788999999999999999999864

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.31  E-value=3.4e-05  Score=76.84  Aligned_cols=82  Identities=11%  Similarity=0.320  Sum_probs=0.0

Q ss_pred             cceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCCeE
Q 012714          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ  230 (458)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~~~  230 (458)
                      ..+.|.|+. +|..+.+.+.++++...|++..+++.|+|+.+++|.|+|+.+.++.|.+++++.+|++|++.....||..
T Consensus        29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n  107 (389)
T 4da1_A           29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN  107 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence            345566665 6778889999999999999999999999999999999999999999999999999999999998887755


Q ss_pred             EEE
Q 012714          231 IFV  233 (458)
Q Consensus       231 I~V  233 (458)
                      .+.
T Consensus       108 ~~~  110 (389)
T 4da1_A          108 LYF  110 (389)
T ss_dssp             ---
T ss_pred             cce
Confidence            443

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.95  E-value=0.0038  Score=47.40  Aligned_cols=70  Identities=17%  Similarity=0.292  Sum_probs=59.3

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecC---CCCCccccCCCCCCEEEE
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHL  449 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~---d~~tL~~~~i~~~~~i~~  449 (458)
                      +...|.||.++|+.+.-....++||.+|..-|.. .+.++....|+.  -.+.|.   .++||.++|+.+++++.+
T Consensus         6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v   80 (84)
T 3qx1_A            6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL   80 (84)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence            4468899999999988889999999999999988 567778888883  478883   568999999999998865

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=96.89  E-value=0.0023  Score=48.01  Aligned_cols=69  Identities=14%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             eEEEEEe--cCCcEEEEEEeCCCCHHHHHHHHhHHhCCCC-----CCeEEEecCcccCCCcchhhcccccccceeE
Q 012714           77 MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL  145 (458)
Q Consensus        77 ~~i~vk~--~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-----~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l  145 (458)
                      +.|++..  ..++.+.++++...||.+|.+.+.+..+++.     .+-+..-.|..|.++.+|++|++.+|+.+.+
T Consensus         5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            4566653  5899999999999999999999999988654     2334556788899999999999999998764

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.80  E-value=0.0045  Score=47.01  Aligned_cols=70  Identities=19%  Similarity=0.350  Sum_probs=59.4

Q ss_pred             ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeec---cCCccccccccCCCCEEEEE
Q 012714          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  222 (458)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L---~d~~tL~~y~i~~~s~i~l~  222 (458)
                      ...|.|+.++|..+.-....++||.+|...|.. .+.+...+.|.  |-.+.+   +.+.||.+.|+.+.++|.+-
T Consensus         7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A            7 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            356778889999888889999999999999988 67788888888  667888   45789999999998888764

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=96.31  E-value=0.022  Score=45.48  Aligned_cols=74  Identities=14%  Similarity=0.155  Sum_probs=61.5

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecC---CCCCccccCCCCCCEEEEEEE
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~---d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      +...|.||.++|+.+.-....++||.++.+-|....+.+.....|+-  -.+.+.   .++||.+.++.+.+++++.-.
T Consensus        12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            45789999999999999999999999999999998777666777764  477776   368999999999988866543

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=96.14  E-value=0.016  Score=45.91  Aligned_cols=63  Identities=35%  Similarity=0.418  Sum_probs=46.0

Q ss_pred             CceEEEeecCCCcHHHHHHhhhcc--cCCCCC------CeeEEec----CeecCCCC-------------CcccccccCC
Q 012714          314 GKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA----GKQLEDGR-------------TLADYNIQKE  368 (458)
Q Consensus       314 g~~~~l~v~~~~ti~~lK~~I~~~--~~i~~~------~q~L~~~----g~~L~~~~-------------~l~~y~I~~~  368 (458)
                      +..+.+.|..+|||..+|++|.+.  .|.|..      ...|-+.    |+.|.|..             ||++|+|.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            467899999999999999999873  455543      3345553    56777722             8899999999


Q ss_pred             CeEEEEEe
Q 012714          369 STLHLVLR  376 (458)
Q Consensus       369 ~~l~l~~~  376 (458)
                      +++-|+++
T Consensus       103 atl~l~~~  110 (111)
T 4e71_A          103 ATLILSKV  110 (111)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEeC
Confidence            99999865

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=96.08  E-value=0.015  Score=47.64  Aligned_cols=71  Identities=17%  Similarity=0.265  Sum_probs=59.8

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeec--C-CCCCccccCCCCCCEEEE
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL--E-DGRTLADYNIQKESTLHL  449 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L--~-d~~tL~~~~i~~~~~i~~  449 (458)
                      .+...|.||.++|+.+.-...+++||.+|..-|... +.++....|+-  -.+.|  . .++||.+.++.+..++++
T Consensus        41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv  116 (124)
T 1wj4_A           41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV  116 (124)
T ss_dssp             SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEE
Confidence            455789999999999999999999999999999887 77777788774  47888  3 378999999999888854

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=96.04  E-value=0.028  Score=44.86  Aligned_cols=73  Identities=15%  Similarity=0.204  Sum_probs=61.8

Q ss_pred             ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeecc---CCccccccccCCCCEEEEEEE
Q 012714          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR  224 (458)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~y~i~~~s~i~l~~~  224 (458)
                      ...|.|+.++|..+.-....++||.+|.+.|....+.+...+.|.  |-.+.+.   .+.||.+.|+.+..+|.+...
T Consensus        13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            356788889999999999999999999999999888887788888  6677775   478999999999888876654

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=95.99  E-value=0.018  Score=52.61  Aligned_cols=67  Identities=19%  Similarity=0.313  Sum_probs=57.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHhhcCCCCC-ceEEEE-c----CeecCC-CCCccccCCCCCCEEEEEEEecCCCC
Q 012714          392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGGEF  458 (458)
Q Consensus       392 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~-~q~Li~-~----G~~L~d-~~tL~~~~i~~~~~i~~~~~~~~g~~  458 (458)
                      .+++.++..+||.+|++.+...++++++ +.||-. .    ...|.| +.||.++++.+|..|.+-+|..+|.|
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~W  226 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTW  226 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCC
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence            3567889999999999999999999887 688765 2    336665 58999999999999999999999987

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=95.98  E-value=0.04  Score=45.01  Aligned_cols=72  Identities=18%  Similarity=0.297  Sum_probs=60.3

Q ss_pred             cCCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCccc--C-CCcchhhcccccccceeEE
Q 012714           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--E-DGRTLADYNIQKESTLHLV  146 (458)
Q Consensus        74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L--~-d~~tL~~~~i~~~s~i~l~  146 (458)
                      .....|.||.++|..+.-....++||.+|...|... +.++..-.|+  |-.+.|  + .+.||.+.++.+.+++.+.
T Consensus        41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A           41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence            345789999999999999999999999999999886 7777777777  567888  3 3799999999988887764

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=95.89  E-value=0.027  Score=50.91  Aligned_cols=67  Identities=22%  Similarity=0.350  Sum_probs=56.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHhhcCCCCC-ceEEEE---c--CeecCC-CCCccccCCCCCCEEEEEEEecCCCC
Q 012714          392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---A--GKQLED-GRTLADYNIQKESTLHLVLRLRGGEF  458 (458)
Q Consensus       392 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~-~q~Li~---~--G~~L~d-~~tL~~~~i~~~~~i~~~~~~~~g~~  458 (458)
                      .+++.++..+||.+|++.+...++++++ +.||-.   +  ...|.| ++||.++++.+|..|.+-+|..+|.|
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~W  214 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTW  214 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence            4678899999999999999999999987 688653   2  235666 57999999999999999999999987

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=95.89  E-value=0.02  Score=47.02  Aligned_cols=66  Identities=29%  Similarity=0.465  Sum_probs=48.0

Q ss_pred             CceEEEeecCCCcHHHHHHhhhcc--cCCCCC------CeeEEec----Ce-ecCCCC-------------CcccccccC
Q 012714          314 GKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA----GK-QLEDGR-------------TLADYNIQK  367 (458)
Q Consensus       314 g~~~~l~v~~~~ti~~lK~~I~~~--~~i~~~------~q~L~~~----g~-~L~~~~-------------~l~~y~I~~  367 (458)
                      ...+++.|..+|||..+|++|.+.  .|+|..      ..-|-+.    |+ .|.|..             ||+.|+|.+
T Consensus        40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D  119 (138)
T 2r2o_A           40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD  119 (138)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred             CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence            367999999999999999999974  456552      1234442    44 466632             899999999


Q ss_pred             CCeEEEEEeecC
Q 012714          368 ESTLHLVLRLRG  379 (458)
Q Consensus       368 ~~~l~l~~~~~~  379 (458)
                      |+++-|+++.+.
T Consensus       120 ga~l~l~~~~~~  131 (138)
T 2r2o_A          120 GATVALVPCLTK  131 (138)
T ss_dssp             TCEEEEEEC---
T ss_pred             CCEEEEEECCCc
Confidence            999999987553

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=95.82  E-value=0.049  Score=43.99  Aligned_cols=66  Identities=26%  Similarity=0.356  Sum_probs=49.2

Q ss_pred             cCCceEEEeecCCCcHHHHHHhhhcc--cCCCC------CCeeEEec----Ce-ecCCCC-------------Ccccccc
Q 012714          312 LTGKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIFA----GK-QLEDGR-------------TLADYNI  365 (458)
Q Consensus       312 ~~g~~~~l~v~~~~ti~~lK~~I~~~--~~i~~------~~q~L~~~----g~-~L~~~~-------------~l~~y~I  365 (458)
                      .++..+++.|..+|||..+|++|.+.  .|.|.      ....|-+.    |+ .|.|..             ||++|+|
T Consensus        14 ~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V   93 (127)
T 3h6n_A           14 CGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI   93 (127)
T ss_dssp             SCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred             CCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence            34567999999999999999999873  44544      23446653    34 366622             8999999


Q ss_pred             cCCCeEEEEEee
Q 012714          366 QKESTLHLVLRL  377 (458)
Q Consensus       366 ~~~~~l~l~~~~  377 (458)
                      .+|+++-|.++.
T Consensus        94 ~dgatv~l~~~~  105 (127)
T 3h6n_A           94 PEGASLAMSLID  105 (127)
T ss_dssp             CTTCEEEEEECC
T ss_pred             CCCCEEEEEEcc
Confidence            999999998764

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.73  E-value=0.043  Score=40.68  Aligned_cols=72  Identities=14%  Similarity=0.194  Sum_probs=59.9

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc---CeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~---G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      .++.|.....+.+.+.|+|..+..++--.|.++..+.++.-.|.-.   +..|+-+++|.||||++   ++++-.++.
T Consensus        11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~e   85 (91)
T 2daj_A           11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNRE   85 (91)
T ss_dssp             EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCCC
T ss_pred             EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheeccccc
Confidence            4556677777888899999999999999999999999998888764   66899999999999987   555544443

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=95.15  E-value=0.04  Score=44.05  Aligned_cols=64  Identities=30%  Similarity=0.469  Sum_probs=47.4

Q ss_pred             CceEEEeecCCCcHHHHHHhhhcc--cCCCCC------CeeEEec----Ce-ecCCCC-------------CcccccccC
Q 012714          314 GKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA----GK-QLEDGR-------------TLADYNIQK  367 (458)
Q Consensus       314 g~~~~l~v~~~~ti~~lK~~I~~~--~~i~~~------~q~L~~~----g~-~L~~~~-------------~l~~y~I~~  367 (458)
                      ...+.+.|..+|||..+|++|.+.  .|.|..      ...|.+.    |+ .|.|..             ||++|+|.+
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            456889999999999999999873  455543      2345553    23 466622             889999999


Q ss_pred             CCeEEEEEee
Q 012714          368 ESTLHLVLRL  377 (458)
Q Consensus       368 ~~~l~l~~~~  377 (458)
                      |+++-|+++.
T Consensus       106 gatl~l~~~~  115 (117)
T 4e74_A          106 GSVVALVSKQ  115 (117)
T ss_dssp             TCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999998764

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.07  E-value=0.13  Score=40.70  Aligned_cols=62  Identities=39%  Similarity=0.506  Sum_probs=45.0

Q ss_pred             CcEEEEEEeCCCCHHHHHHHHhHHh--CCC------CCCeEEEec----CcccCCC-------------cchhhcccccc
Q 012714           86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLEDG-------------RTLADYNIQKE  140 (458)
Q Consensus        86 g~~~~l~v~~~~tV~~lK~~i~~~~--gip------~~~q~L~~~----G~~L~d~-------------~tL~~~~i~~~  140 (458)
                      +..+++.|-..|||.++|++|.+..  |.|      ++...|-|.    |+.|.|.             .||++|++.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            4568888999999999999998753  555      344556552    4556551             68999999999


Q ss_pred             cceeEEE
Q 012714          141 STLHLVL  147 (458)
Q Consensus       141 s~i~l~~  147 (458)
                      +++.|+.
T Consensus       103 atl~l~~  109 (111)
T 4e71_A          103 ATLILSK  109 (111)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            9998764

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=94.90  E-value=0.11  Score=41.25  Aligned_cols=70  Identities=17%  Similarity=0.201  Sum_probs=57.2

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecC--CCCCccccCCCCCCEEEEE
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE--DGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~--d~~tL~~~~i~~~~~i~~~  450 (458)
                      ..+|.||.++|+.+.-....++||.+|..-|..+ +..+....|+-  -.+.|.  .++||.+.|+.+..++.+-
T Consensus        23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve   96 (109)
T 2cr5_A           23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE   96 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence            4688899999999888899999999999999965 55566677764  477786  4689999999999888653

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=94.67  E-value=0.096  Score=41.66  Aligned_cols=71  Identities=18%  Similarity=0.228  Sum_probs=57.8

Q ss_pred             ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeecc--CCccccccccCCCCEEEEEE
Q 012714          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL  223 (458)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L~--d~~tL~~y~i~~~s~i~l~~  223 (458)
                      ..+|.|+.++|+.+.-....++||.+|...|... +.....+.|.  |-.+.+.  .+.||.+.|+.+..+|.|..
T Consensus        23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            3567788899998888889999999999999965 5556677787  6677785  47899999999988886654

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=94.54  E-value=0.15  Score=41.79  Aligned_cols=69  Identities=19%  Similarity=0.294  Sum_probs=56.4

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhc-CCCCCceEEEE--cCeecCC-CCCccccCCCCCCEE
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF--AGKQLED-GRTLADYNIQKESTL  447 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~~~~~~q~Li~--~G~~L~d-~~tL~~~~i~~~~~i  447 (458)
                      +...|.||.++|+.+.-....++||.+|..-|.... +.+.....|+.  -.+.|.| ++||.+.|+.+..+|
T Consensus        51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            347899999999999999999999999999999864 34556677774  4788875 689999999986555

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.51  E-value=0.069  Score=39.62  Aligned_cols=63  Identities=13%  Similarity=0.244  Sum_probs=54.1

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEe---cCeeccCCccccccccCC
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK  215 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~---~g~~L~d~~tL~~y~i~~  215 (458)
                      +++.|.-...+...+.|+|..+.+++-..|+++..+.+++..|..   .+..|+=+++|.||||++
T Consensus        11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A           11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            344555566677788999999999999999999999999999984   567899999999999997

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=93.94  E-value=0.17  Score=40.63  Aligned_cols=61  Identities=31%  Similarity=0.408  Sum_probs=44.6

Q ss_pred             ceEEEeecCCCcHHHHHHhhhcc----cCCCCCC----eeEEec----CeecCCC--------------CCcccccccCC
Q 012714          315 KTITLEVESSDTIDNVKAKIQDK----EGIPPDQ----QRLIFA----GKQLEDG--------------RTLADYNIQKE  368 (458)
Q Consensus       315 ~~~~l~v~~~~ti~~lK~~I~~~----~~i~~~~----q~L~~~----g~~L~~~--------------~~l~~y~I~~~  368 (458)
                      ..+++.|..+|||..+|++|.+.    .|.|..+    ..|-+.    |..|.|.              .||+.|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            56899999999999999998863    4776542    334442    2344441              27899999999


Q ss_pred             CeEEEEE
Q 012714          369 STLHLVL  375 (458)
Q Consensus       369 ~~l~l~~  375 (458)
                      +++-++.
T Consensus       119 atlal~k  125 (126)
T 3kuz_A          119 STIKVFK  125 (126)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEee
Confidence            9998875

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=93.93  E-value=0.31  Score=39.94  Aligned_cols=63  Identities=30%  Similarity=0.440  Sum_probs=48.3

Q ss_pred             cEEEEEecCCCcHHHHHHHHHhhcC--C------CCCceEEEE----cCe-ecCCC-------------CCccccCCCCC
Q 012714          391 KTITLEVESSDTIDNVKAKIQDKEG--I------PPDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE  444 (458)
Q Consensus       391 ~~~~~~v~~~~tV~~lK~~i~~~~~--~------~~~~q~Li~----~G~-~L~d~-------------~tL~~~~i~~~  444 (458)
                      ..+.+.|-..|||.++|++|-+..-  .      .+++.-|-+    .|+ .|.|.             .||+.|+|.+|
T Consensus        41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg  120 (138)
T 2r2o_A           41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  120 (138)
T ss_dssp             CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred             CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence            5678999999999999999998753  2      456677777    244 47664             38999999999


Q ss_pred             CEEEEEEEe
Q 012714          445 STLHLVLRL  453 (458)
Q Consensus       445 ~~i~~~~~~  453 (458)
                      +++-++-+.
T Consensus       121 a~l~l~~~~  129 (138)
T 2r2o_A          121 ATVALVPCL  129 (138)
T ss_dssp             CEEEEEEC-
T ss_pred             CEEEEEECC
Confidence            999776543

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=93.70  E-value=0.14  Score=41.98  Aligned_cols=67  Identities=21%  Similarity=0.347  Sum_probs=54.4

Q ss_pred             ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHh-CCCCCCeEEE--ecCeeccC-CccccccccCCCCE
Q 012714          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKEST  218 (458)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~-gip~~~q~L~--~~g~~L~d-~~tL~~y~i~~~s~  218 (458)
                      ...|.|+..+|..+.-.+..++||.+|.+.|.... +.+...+.|.  |-.+.++| +.||.+.|+.+...
T Consensus        52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav  122 (127)
T 1s3s_G           52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI  122 (127)
T ss_dssp             CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence            35677888999999999999999999999998863 4556677777  67888865 69999999998443

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=93.33  E-value=0.67  Score=33.38  Aligned_cols=67  Identities=25%  Similarity=0.363  Sum_probs=50.2

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      .|+|+|....++. .+++....||.+|.+.+    +++++......+|+.+..+.     -+++||.|-++--..||
T Consensus         4 ~m~i~vNg~~~~~-~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG   70 (70)
T 1ryj_A            4 GMKFTVITDDGKK-ILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG   70 (70)
T ss_dssp             CEEEEEEETTEEE-EEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred             eEEEEEeCccCce-eEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence            4888887765443 67888889999998766    56677778889999987655     68899999765444444

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=92.99  E-value=0.82  Score=36.85  Aligned_cols=63  Identities=25%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             CCcEEEEEecCCCcHHHHHHHHHhhc--C------CCCCceEEEEc----Ce-ecCCC-------------CCccccCCC
Q 012714          389 TGKTITLEVESSDTIDNVKAKIQDKE--G------IPPDQQRLIFA----GK-QLEDG-------------RTLADYNIQ  442 (458)
Q Consensus       389 ~g~~~~~~v~~~~tV~~lK~~i~~~~--~------~~~~~q~Li~~----G~-~L~d~-------------~tL~~~~i~  442 (458)
                      .+..+.+.|-..|||.++|++|-...  +      ..+++..|-|.    |+ .|.|.             .||+.|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            45567888999999999999998864  2      23578888882    44 37653             489999999


Q ss_pred             CCCEEEEEE
Q 012714          443 KESTLHLVL  451 (458)
Q Consensus       443 ~~~~i~~~~  451 (458)
                      +|+++-+..
T Consensus        95 dgatv~l~~  103 (127)
T 3h6n_A           95 EGASLAMSL  103 (127)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999997754

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=92.79  E-value=0.48  Score=34.98  Aligned_cols=58  Identities=19%  Similarity=0.374  Sum_probs=50.5

Q ss_pred             EEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEEE
Q 012714          241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  298 (458)
Q Consensus       241 i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~  298 (458)
                      +.-.++-..++..||..++.+.|++.+.+.+...+..|+++++|.+..++-...+.++
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin   62 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS   62 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence            3444556778899999999999999999999888888999999999999999988876

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=92.78  E-value=0.47  Score=37.85  Aligned_cols=64  Identities=30%  Similarity=0.427  Sum_probs=47.9

Q ss_pred             CcEEEEEecCCCcHHHHHHHHHhhc--C------CCCCceEEEE-cC---e-ecCCC-------------CCccccCCCC
Q 012714          390 GKTITLEVESSDTIDNVKAKIQDKE--G------IPPDQQRLIF-AG---K-QLEDG-------------RTLADYNIQK  443 (458)
Q Consensus       390 g~~~~~~v~~~~tV~~lK~~i~~~~--~------~~~~~q~Li~-~G---~-~L~d~-------------~tL~~~~i~~  443 (458)
                      ...+.+.|-..|||.++|++|-...  |      ..+++..|-| .|   + .|.|.             .||+.|+|.+
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            3457888999999999999998764  2      2356777877 23   3 36552             4799999999


Q ss_pred             CCEEEEEEEe
Q 012714          444 ESTLHLVLRL  453 (458)
Q Consensus       444 ~~~i~~~~~~  453 (458)
                      |+++-++-|+
T Consensus       106 gatl~l~~~~  115 (117)
T 4e74_A          106 GSVVALVSKQ  115 (117)
T ss_dssp             TCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999776554

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=91.91  E-value=0.37  Score=35.25  Aligned_cols=60  Identities=12%  Similarity=0.308  Sum_probs=46.7

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      |+|+|+......-.++++++.||.+|-    ++.|++++.-....+|+.+..+.      +.+||.|-++
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv   60 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL   60 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence            788888885555568999999999875    56789998888888999887665      2358888653

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=91.70  E-value=1.1  Score=32.12  Aligned_cols=67  Identities=24%  Similarity=0.337  Sum_probs=48.3

Q ss_pred             ceeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      .|+|+|....+ ...++++...||.+|.+.+    ++++....+..+|.....+.     -+++|+.+.++....||
T Consensus         4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG   70 (70)
T 1ryj_A            4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG   70 (70)
T ss_dssp             CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred             eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence            47777764432 2456777789999998876    56777777889999886554     68899999887655443

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=91.12  E-value=1.4  Score=32.48  Aligned_cols=59  Identities=19%  Similarity=0.369  Sum_probs=51.0

Q ss_pred             eeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEE
Q 012714          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (458)
Q Consensus       166 ~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~  224 (458)
                      .-.++-..++..||+.++.+.|++-+...+...+..|+++++|.+.+++-...+.+.+.
T Consensus         6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq   64 (89)
T 2juo_A            6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ   64 (89)
T ss_dssp             EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred             hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence            34455677889999999999999999999999999999999999999998887776654

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=90.71  E-value=0.67  Score=34.60  Aligned_cols=48  Identities=10%  Similarity=0.159  Sum_probs=41.7

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  427 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G  427 (458)
                      +.+|+|.|...  -++.+.|.++.+..+|.++|+++.+++++...|-|..
T Consensus         3 ~~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            3 HMAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             SSCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             CCcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            44577777776  5788999999999999999999999999999999964

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=90.21  E-value=0.84  Score=41.36  Aligned_cols=63  Identities=19%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             eEeeecCCCCcHHHHHHHHHHHhCCCCC-CeEEEe-c----CeeccC-CccccccccCCCCEEEEEEEec
Q 012714          164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLR  226 (458)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~-~q~L~~-~----g~~L~d-~~tL~~y~i~~~s~i~l~~~~~  226 (458)
                      .++..++..+|+.+|++.++..+++|.+ ..||.. .    ...|+| +.||.++++.++..|.+-.+..
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~  222 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE  222 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence            3556779999999999999999999997 688873 2    345655 6899999999999998777644

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=89.96  E-value=0.68  Score=41.57  Aligned_cols=63  Identities=22%  Similarity=0.352  Sum_probs=51.0

Q ss_pred             eEeeecCCCCcHHHHHHHHHHHhCCCCC-CeEEE--ec---CeeccC-CccccccccCCCCEEEEEEEec
Q 012714          164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FA---GKQLED-GRTLADYNIQKESTLHLVLRLR  226 (458)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~I~~~~gip~~-~q~L~--~~---g~~L~d-~~tL~~y~i~~~s~i~l~~~~~  226 (458)
                      .+++.++..+|+.+|++.+...+++|.+ ..||.  +.   ...|+| +.||.++++.++..|.+-++..
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~  210 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE  210 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence            3567789999999999999999999997 68877  22   234555 5799999999999998777643

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=89.12  E-value=0.87  Score=33.24  Aligned_cols=66  Identities=14%  Similarity=0.352  Sum_probs=48.7

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      |++.|+..+.....+++++..||++|-    +..|+|++.-...-||+....+.      +.+|+.+.++--..||
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~   66 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG   66 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence            677888775555668999999999975    45799999888888998886555      3358888776444444

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=88.72  E-value=3.6  Score=33.00  Aligned_cols=60  Identities=30%  Similarity=0.391  Sum_probs=43.6

Q ss_pred             cEEEEEecCCCcHHHHHHHHHhhc----CC----CCCceEEEEc----CeecCCC--------------CCccccCCCCC
Q 012714          391 KTITLEVESSDTIDNVKAKIQDKE----GI----PPDQQRLIFA----GKQLEDG--------------RTLADYNIQKE  444 (458)
Q Consensus       391 ~~~~~~v~~~~tV~~lK~~i~~~~----~~----~~~~q~Li~~----G~~L~d~--------------~tL~~~~i~~~  444 (458)
                      ..+.+.|-..|||.++|++|-...    |.    .+++..|-|.    |..|.|.              .||+.|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            467888999999999999997642    53    3566777662    2344431              37889999999


Q ss_pred             CEEEEE
Q 012714          445 STLHLV  450 (458)
Q Consensus       445 ~~i~~~  450 (458)
                      +++-++
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            999654

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=88.64  E-value=3  Score=32.02  Aligned_cols=74  Identities=14%  Similarity=0.320  Sum_probs=50.1

Q ss_pred             cCceeEEEEcCC------C-cEEEEEecCCCcHHHHHHHHHhhcC-C----------CCCceEEEEcCeecCCCCCcccc
Q 012714          378 RGGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADY  439 (458)
Q Consensus       378 ~~~~~i~vk~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~~-~----------~~~~q~Li~~G~~L~d~~tL~~~  439 (458)
                      .++|+|+|+...      | ....+++....||.+|.+.+..+.. +          ......+..+|+....     +.
T Consensus         7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~   81 (98)
T 1vjk_A            7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE   81 (98)
T ss_dssp             --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred             cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence            357888888763      4 3567888888999999999988752 1          1234567778887753     56


Q ss_pred             CCCCCCEEEEEEEecCC
Q 012714          440 NIQKESTLHLVLRLRGG  456 (458)
Q Consensus       440 ~i~~~~~i~~~~~~~~g  456 (458)
                      -+++||.|.++--..||
T Consensus        82 ~L~dGDeV~i~ppv~GG   98 (98)
T 1vjk_A           82 ELKDGDVVGVFPPVSGG   98 (98)
T ss_dssp             BCCTTCEEEEESCC---
T ss_pred             CCCCCCEEEEECCCCCC
Confidence            78999999765434443

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=87.52  E-value=1.7  Score=44.60  Aligned_cols=65  Identities=29%  Similarity=0.451  Sum_probs=47.1

Q ss_pred             ceEEEeecCCCcHHHHHHhhhc--ccCCCCC------CeeEEec----Ce-ecCCCC-------------CcccccccCC
Q 012714          315 KTITLEVESSDTIDNVKAKIQD--KEGIPPD------QQRLIFA----GK-QLEDGR-------------TLADYNIQKE  368 (458)
Q Consensus       315 ~~~~l~v~~~~ti~~lK~~I~~--~~~i~~~------~q~L~~~----g~-~L~~~~-------------~l~~y~I~~~  368 (458)
                      ..+.+.|..+|||..+|++|.+  ..|.|..      ...|-+.    |+ .|.|.+             ||++|+|.+|
T Consensus       274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  353 (644)
T 3hm6_X          274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  353 (644)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred             CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence            5689999999999999999986  3455542      2335542    33 466622             8999999999


Q ss_pred             CeEEEEEeecC
Q 012714          369 STLHLVLRLRG  379 (458)
Q Consensus       369 ~~l~l~~~~~~  379 (458)
                      +++-|+++...
T Consensus       354 a~v~L~p~~~~  364 (644)
T 3hm6_X          354 ATVALVPCLTK  364 (644)
T ss_dssp             CEEEEEEC---
T ss_pred             cEEEEEecccc
Confidence            99999987544

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=87.32  E-value=1.1  Score=33.43  Aligned_cols=45  Identities=11%  Similarity=0.197  Sum_probs=37.7

Q ss_pred             EEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCe
Q 012714          156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  200 (458)
Q Consensus       156 ~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~  200 (458)
                      .|+..-.-++.+.|+++.+..+|+++|.++.++|++...|.|...
T Consensus         7 ~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~   51 (83)
T 1oey_A            7 TLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR   51 (83)
T ss_dssp             EEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred             EEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence            333333368999999999999999999999999999999998653

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=87.04  E-value=3.3  Score=31.75  Aligned_cols=73  Identities=12%  Similarity=0.294  Sum_probs=48.0

Q ss_pred             ecceeeEEEecc------C-ceEeeecCCCCcHHHHHHHHHHHhC-C----------CCCCeEEEecCeeccCCcccccc
Q 012714          150 RGGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADY  211 (458)
Q Consensus       150 ~~~~~i~v~~~~------g-~~~~~~v~~~~tV~~LK~~I~~~~g-i----------p~~~q~L~~~g~~L~d~~tL~~y  211 (458)
                      .+.|.|.|+.+.      | ....++++...||++|.+.+..... +          ......+.-||+....     ++
T Consensus         7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~   81 (98)
T 1vjk_A            7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE   81 (98)
T ss_dssp             --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred             cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence            356777777653      3 4567888888999999999987641 1          1233456677776642     66


Q ss_pred             ccCCCCEEEEEEEecC
Q 012714          212 NIQKESTLHLVLRLRG  227 (458)
Q Consensus       212 ~i~~~s~i~l~~~~~~  227 (458)
                      -+++|+.|.++....|
T Consensus        82 ~L~dGDeV~i~ppv~G   97 (98)
T 1vjk_A           82 ELKDGDVVGVFPPVSG   97 (98)
T ss_dssp             BCCTTCEEEEESCC--
T ss_pred             CCCCCCEEEEECCCCC
Confidence            7899999987755443

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=86.47  E-value=2.2  Score=30.81  Aligned_cols=71  Identities=15%  Similarity=0.331  Sum_probs=45.4

Q ss_pred             eeEEEEcCCC-cEEEEEecCCCcHHHHHHHHHhhcCCCC--CceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          381 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       381 ~~i~vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~~~~~--~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |.|+|+.... +.-++++ ...||.+|.+.+..+.++..  ....+..||+...+    .+.-+++||.|.++--..||
T Consensus         1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG   74 (74)
T 3rpf_C            1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG   74 (74)
T ss_dssp             CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred             CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence            4555655431 1123566 67899999999987644322  45666778887543    34568999999876555554

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=86.27  E-value=2.1  Score=43.82  Aligned_cols=66  Identities=27%  Similarity=0.461  Sum_probs=46.8

Q ss_pred             CceEEEeecCCCcHHHHHHhhhcc--cCCCC------CCeeEEec----Ce-ecCCC-------------CCcccccccC
Q 012714          314 GKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIFA----GK-QLEDG-------------RTLADYNIQK  367 (458)
Q Consensus       314 g~~~~l~v~~~~ti~~lK~~I~~~--~~i~~------~~q~L~~~----g~-~L~~~-------------~~l~~y~I~~  367 (458)
                      ...+++.|..+|||..+|++|.+.  .|.|.      ....|.+.    |+ .|.|.             -||++|+|.+
T Consensus       246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D  325 (627)
T 3ig3_A          246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD  325 (627)
T ss_dssp             -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred             CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence            467899999999999999999873  44544      23345542    32 45552             2899999999


Q ss_pred             CCeEEEEEeecC
Q 012714          368 ESTLHLVLRLRG  379 (458)
Q Consensus       368 ~~~l~l~~~~~~  379 (458)
                      |+++-|+++...
T Consensus       326 ga~v~L~p~~~~  337 (627)
T 3ig3_A          326 GSLVALVPKQVS  337 (627)
T ss_dssp             TCEEEEEEC---
T ss_pred             CceEEEEecccc
Confidence            999999987543

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=85.14  E-value=3.4  Score=31.08  Aligned_cols=68  Identities=13%  Similarity=0.205  Sum_probs=44.8

Q ss_pred             cceeeEEEeccCceEeeecCCC-CcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          151 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~-~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      ..|.|.|.   |+.  ++++.. .||.+|.+.+    ++++....+..+|+.+..+ ...+.-+++|+.|.++....||
T Consensus        19 ~~M~I~vN---Ge~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG   87 (87)
T 1tyg_B           19 GRHMLQLN---GKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG   87 (87)
T ss_dssp             ---CEEET---TEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred             cceEEEEC---CEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence            34656554   554  455666 8999998876    5777777777888887432 2345679999999988765543

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=84.94  E-value=3  Score=30.11  Aligned_cols=58  Identities=14%  Similarity=0.370  Sum_probs=39.3

Q ss_pred             eeecCCCCcHHHHHHHHHHHhCCCC--CCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          166 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       166 ~~~v~~~~tV~~LK~~I~~~~gip~--~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      .+++ ...||++|.+.+....++..  ....+.-||+...+    .+.-+++|+++.++....||
T Consensus        15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG   74 (74)
T 3rpf_C           15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG   74 (74)
T ss_dssp             CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred             EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence            3556 66899999999986544322  34455667776432    35678999999888766554

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=84.18  E-value=4.6  Score=37.66  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=54.9

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEE---cCe--ecCCCCCccccCCCCCCEEEEEEEe
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~---~G~--~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      ++.+.|..++| ++++.+++.+|+.++-+.+..+.|+.. +..-|.+   +|.  -|+.++.+.+.+++.+....+..|.
T Consensus         1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~   79 (294)
T 1ef1_A            1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA   79 (294)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred             CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence            46788899998 578999999999999999999999854 4445655   343  3677788888766666655555554

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=83.71  E-value=5.7  Score=37.47  Aligned_cols=75  Identities=11%  Similarity=0.099  Sum_probs=57.0

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-CceEEEE--cCe--ecCCCCCccccCCCCCCEEEEEEE
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~-~~q~Li~--~G~--~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      +.++.+.|..++| .+.+.+++.+|+.++-+.|..+.|+.. +..-|.|  +|.  -|+.++++.+...+.+....+..|
T Consensus        20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr   98 (314)
T 1h4r_A           20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL   98 (314)
T ss_dssp             -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred             CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence            5668899999999 788999999999999999999999754 4445555  343  377788898877665565555555


Q ss_pred             e
Q 012714          453 L  453 (458)
Q Consensus       453 ~  453 (458)
                      .
T Consensus        99 ~   99 (314)
T 1h4r_A           99 A   99 (314)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=81.70  E-value=3.2  Score=31.22  Aligned_cols=68  Identities=13%  Similarity=0.204  Sum_probs=45.0

Q ss_pred             CceeEEEEcCCCcEEEEEecCC-CcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          379 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~-~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      ..|+|+|   +|+.  ++++.. .||.+|.+.+    ++++....+..+|+.+... ...+.-+++||.|-++--..||
T Consensus        19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG   87 (87)
T 1tyg_B           19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG   87 (87)
T ss_dssp             ---CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred             cceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence            4566654   4554  566776 8999998766    5667777788899988643 3344568999999766544444

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=81.66  E-value=6.2  Score=36.74  Aligned_cols=71  Identities=17%  Similarity=0.270  Sum_probs=54.1

Q ss_pred             eEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc-eEEEec---Cc--ccCCCCcccccccCCCCeEEEEEe
Q 012714          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHLVLR  300 (458)
Q Consensus       229 ~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~-q~L~~~---g~--~l~d~~tL~~y~I~~~~ti~l~~~  300 (458)
                      +.+.|..++| ++.+.++++.|+.+|-..++++.|+.... +-|.+.   |.  -|+.++++.+.+++.+....+.+|
T Consensus         2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr   78 (294)
T 1ef1_A            2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR   78 (294)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred             EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence            4556777777 78899999999999999999999988766 456552   32  267788888887777766666554

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=80.21  E-value=1.4  Score=36.07  Aligned_cols=39  Identities=21%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             cEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeee
Q 012714           11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ   49 (458)
Q Consensus        11 ~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~   49 (458)
                      +..++.|..+.|+.++|+.|.+..|+|+++|+|+.....
T Consensus        56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~R   94 (130)
T 2kvr_A           56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQAR   94 (130)
T ss_dssp             SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCC
T ss_pred             CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecC
Confidence            445789999999999999999999999999999986443

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=80.19  E-value=8  Score=39.61  Aligned_cols=64  Identities=25%  Similarity=0.408  Sum_probs=47.8

Q ss_pred             CcEEEEEecCCCcHHHHHHHHHhhc--C------CCCCceEEEE----cCe-ecCCC-------------CCccccCCCC
Q 012714          390 GKTITLEVESSDTIDNVKAKIQDKE--G------IPPDQQRLIF----AGK-QLEDG-------------RTLADYNIQK  443 (458)
Q Consensus       390 g~~~~~~v~~~~tV~~lK~~i~~~~--~------~~~~~q~Li~----~G~-~L~d~-------------~tL~~~~i~~  443 (458)
                      ...+.+.|-..|||.++|++|-+..  |      ..+++..|-|    .|+ .|.|.             .||++|+|.+
T Consensus       246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D  325 (627)
T 3ig3_A          246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD  325 (627)
T ss_dssp             -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred             CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence            4567888999999999999998764  2      2467777877    233 45552             4899999999


Q ss_pred             CCEEEEEEEe
Q 012714          444 ESTLHLVLRL  453 (458)
Q Consensus       444 ~~~i~~~~~~  453 (458)
                      |+++-++-+.
T Consensus       326 ga~v~L~p~~  335 (627)
T 3ig3_A          326 GSLVALVPKQ  335 (627)
T ss_dssp             TCEEEEEEC-
T ss_pred             CceEEEEecc
Confidence            9999876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	458
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	4e-35
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	8e-36
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	8e-36
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	8e-36
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	8e-36
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	8e-36
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	3e-35
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	7e-32
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	7e-32
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	7e-32
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	7e-32
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	7e-32
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	7e-32
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-30
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-30
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-30
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-30
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-30
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	9e-28
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	9e-30
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	5e-28
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-28
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-28
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-28
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-28
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	2e-27
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	1e-25
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	4e-28
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	3e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	6e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	5e-25
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	5e-25
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	5e-25
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	5e-25
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	5e-25
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	5e-20
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	1e-22
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	5e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-18
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-18
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-18
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-18
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-18
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	4e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	1e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	2e-16
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	9e-17
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 7e-36
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 136 NIQKESTLHLVLRLRG 151
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 7e-36
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 212 NIQKESTLHLVLRLRG 227
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 7e-36
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 288 NIQKESTLHLVLRLRG 303
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 7e-36
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 364 NIQKESTLHLVLRLRG 379
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 7e-36
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 440 NIQKESTLHLVLRLRG 455
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (309), Expect = 4e-35
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 3  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCD 62

Query: 61 IQKESTLHLVLRLRG 75
          ++++S +H+V R R 
Sbjct: 63 LEQQSIVHIVQRPRR 77

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 8e-36
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 136 NIQKESTLHLVLRLRGG 152
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 8e-36
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 212 NIQKESTLHLVLRLRGG 228
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 8e-36
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 288 NIQKESTLHLVLRLRGG 304
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 8e-36
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 364 NIQKESTLHLVLRLRGG 380
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 8e-36
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 440 NIQKESTLHLVLRLRGG 456
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (311), Expect = 3e-35
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y 
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 61 IQKESTLHLVLRLRGG 76
          IQ   TL L  +   G
Sbjct: 68 IQDSDTLILSKKKGSG 83

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 61 IQKESTLHLVLRL 73
          I+  S LHLVL L
Sbjct: 61 IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 137 IQKESTLHLVLRL 149
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 213 IQKESTLHLVLRL 225
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 289 IQKESTLHLVLRL 301
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 365 IQKESTLHLVLRL 377
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 441 IQKESTLHLVLRL 453
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 7e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 61 IQKESTLHLVLRL 73
          ++  ST+ + LRL
Sbjct: 64 LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 7e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 137 IQKESTLHLVLRL 149
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 7e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 213 IQKESTLHLVLRL 225
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 7e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 289 IQKESTLHLVLRL 301
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 7e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 365 IQKESTLHLVLRL 377
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 7e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 441 IQKESTLHLVLRL 453
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 2  QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1  DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 61 I-------QKESTLHLVLRLRGGMQIFVKT 83
                  Q  +T+ L  R     +     
Sbjct: 61 FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 78  QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 137 I-------QKESTLHLVLRLRGGMQIFVKT 159
                   Q  +T+ L  R     +     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 213 I-------QKESTLHLVLRLRGGMQIFVKT 235
                   Q  +T+ L  R     +     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 230 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 289 I-------QKESTLHLVLRLRGGMQIFVKT 311
                   Q  +T+ L  R     +     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 306 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 365 I-------QKESTLHLVLRLRGGMQIFVKT 387
                   Q  +T+ L  R     +     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 2e-30
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 382 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 441 I-------QKESTLHLVLRLRGGE 457
                   Q  +T+ L  R     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTF 84

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 61 IQKESTLHLVLR 72
          +     +HLV R
Sbjct: 61 VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 137 IQKESTLHLVLR 148
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 213 IQKESTLHLVLR 224
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 289 IQKESTLHLVLR 300
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 365 IQKESTLHLVLR 376
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 441 IQKESTLHLVLR 452
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 54  RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 109
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 110 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 130 RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 185
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 186 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 206 RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 261
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 262 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 282 RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 337
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 338 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 358 RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 413
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 414 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (259), Expect = 9e-28
 Identities = 16/72 (22%), Positives = 31/72 (43%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 61  IQKESTLHLVLR 72
           I     L L  +
Sbjct: 89  IHDGMNLELYYQ 100

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 68 HLVLRLRG 75
          HL L+ RG
Sbjct: 79 HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 144 HLVLRLRG 151
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 220 HLVLRLRG 227
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 296 HLVLRLRG 303
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 371
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 372 HLVLRLRG 379
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 447
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 448 HLVLRLRG 455
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-30
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 58 DYNIQKESTLHLVLRLRGGMQ 78
          +Y I +++ + +++     + 
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-30
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 134 DYNIQKESTLHLVLRLRGGMQ 154
           +Y I +++ + +++     + 
Sbjct: 61  EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-30
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 210 DYNIQKESTLHLVLRLRGGMQ 230
           +Y I +++ + +++     + 
Sbjct: 61  EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-30
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 285
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 286 DYNIQKESTLHLVLRLRGGMQ 306
           +Y I +++ + +++     + 
Sbjct: 61  EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-30
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 361
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 362 DYNIQKESTLHLVLRLRGGMQ 382
           +Y I +++ + +++     + 
Sbjct: 61  EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 9e-30
 Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 437
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 438 DYNIQKESTLHLVLRLRGGE 457
           +Y I +++ + +++      
Sbjct: 61  EYKIDEKNFVVVMVTKPKAV 80

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1  MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 59 YNIQKESTLHLVLRL 73
          Y ++   T+ L++R 
Sbjct: 61 YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 77  MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 135 YNIQKESTLHLVLRL 149
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 153 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 211 YNIQKESTLHLVLRL 225
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 229 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 287 YNIQKESTLHLVLRL 301
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 305 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 363 YNIQKESTLHLVLRL 377
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 381 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 439 YNIQKESTLHLVLRL 453
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 120
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 121 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 152
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 196
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 197 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 228
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 272
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 273 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 304
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 348
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 349 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 380
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 424
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 425 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 456
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (262), Expect = 5e-28
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 16/92 (17%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 45
          M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8  MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 46 AGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 76
          AG++L + R  L DY I+    +  + +L   
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 75  GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 129
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 162
            +L  Y ++    + L+ +   G++   +T +G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 151 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 205
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 206 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 238
            +L  Y ++    + L+ +   G++   +T +G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 227 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 281
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 282 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 314
            +L  Y ++    + L+ +   G++   +T +G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 303 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 357
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 358 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 390
            +L  Y ++    + L+ +   G++   +T +G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 2e-27
 Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 1  MQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRT 55
          M I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D  +
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86
          L  Y ++    + L+ +   G++   +T +G
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.2 bits (244), Expect = 1e-25
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 379 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 433
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 434 RTLADYNIQKESTLHLVLRLRGG 456
            +L  Y ++    + L+ +   G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVG 88

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 52
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 53  GRTLADYNIQKESTLHLVLRLRGGM 77
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 129 GRTLADYNIQKESTLHLVLRLRGGM 153
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 205 GRTLADYNIQKESTLHLVLRLRGGM 229
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 280
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 281 GRTLADYNIQKESTLHLVLRLRGGM 305
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 356
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 357 GRTLADYNIQKESTLHLVLRLRGGM 381
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 4e-28
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 432
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 433 GRTLADYNIQKESTLHLVLRLRGG 456
             TL    +    T  + L  R  
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARET 100

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 132
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 133 ADYNIQKESTLHLVL 147
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 208
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 209 ADYNIQKESTLHLVL 223
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 284
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 285 ADYNIQKESTLHLVL 299
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 360
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 361 ADYNIQKESTLHLVL 375
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 436
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 437 ADYNIQKESTLHLVL 451
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 3  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62

Query: 58 DYNIQKESTLHLVL 71
          DY I +++ + +++
Sbjct: 63 DYRIDEKNFVVVMV 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 61 IQKESTLHLVLRL 73
          I K+  + +++  
Sbjct: 64 IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 137 IQKESTLHLVLRL 149
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 213 IQKESTLHLVLRL 225
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 289 IQKESTLHLVLRL 301
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 365 IQKESTLHLVLRL 377
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 441 IQKESTLHLVLRL 453
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 59 YNIQKESTLHLVLR 72
          Y++     + L++R
Sbjct: 61 YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 77  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 135 YNIQKESTLHLVLR 148
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 153 MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 211 YNIQKESTLHLVLR 224
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 229 MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 287 YNIQKESTLHLVLR 300
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 305 MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 363 YNIQKESTLHLVLR 376
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 381 MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 439 YNIQKESTLHLVLR 452
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2  LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 61 IQKESTLHLVLR 72
          IQ   ++HLV  
Sbjct: 61 IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 137 IQKESTLHLVLR 148
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 213 IQKESTLHLVLR 224
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 289 IQKESTLHLVLR 300
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 365 IQKESTLHLVLR 376
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 441 IQKESTLHLVLR 452
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 2e-26
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 76  GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 131
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 132 LADYNIQKES--TLHLVLRLRGG 152
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 2e-26
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 152 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 207
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 208 LADYNIQKES--TLHLVLRLRGG 228
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 2e-26
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 228 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 283
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 284 LADYNIQKES--TLHLVLRLRGG 304
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 2e-26
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 304 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 359
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 360 LADYNIQKES--TLHLVLRLRGG 380
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 2e-26
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 380 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 435
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 436 LADYNIQKES--TLHLVLRLRGG 456
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (246), Expect = 6e-26
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 1  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTL 56
          + + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + L
Sbjct: 8  VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67

Query: 57 ADYNIQKES--TLHLVLRLRGG 76
           D   ++E    LHLV  ++ G
Sbjct: 68 RDLLPKQEKRHVLHLVCNVKSG 89

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 59
           + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2  DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 60 NIQKESTLHLVLR 72
           +   ST+ LV+ 
Sbjct: 62 GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 135
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 136 NIQKESTLHLVLR 148
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 211
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 212 NIQKESTLHLVLR 224
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 287
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 288 NIQKESTLHLVLR 300
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 363
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 364 NIQKESTLHLVLR 376
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 439
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 440 NIQKESTLHLVLR 452
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 133
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 134 DYNIQKESTLHLVLRLRGG 152
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 209
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 210 DYNIQKESTLHLVLRLRGG 228
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 285
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 286 DYNIQKESTLHLVLRLRGG 304
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 361
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 362 DYNIQKESTLHLVLRLRGG 380
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 437
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 438 DYNIQKESTLHLVLRLRGG 456
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.6 bits (235), Expect = 2e-24
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+  
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL 64

Query: 60 NIQKESTLHLVLRLRGG 76
          NI     +H      G 
Sbjct: 65 NITNNCVIHCHRSPPGA 81

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 64  ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 118
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 119 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 140 ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 194
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 216 ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 270
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 271 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 292 ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 346
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 347 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 368 ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 422
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 423 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 452
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.2 bits (203), Expect = 5e-20
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 7  TLTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQRLIFAGKQLEDGRTLADYNIQK 63
           L    +        +I  +K  I  K  E +P P+   LI+ G++L+D +TL  Y IQ 
Sbjct: 24 QLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 83

Query: 64 ESTLHLVLR 72
           ST+H++ +
Sbjct: 84 GSTVHVLRK 92

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 61  IQKESTLHLVLR 72
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 137 IQKESTLHLVLR 148
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 213 IQKESTLHLVLR 224
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 289 IQKESTLHLVLR 300
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 365 IQKESTLHLVLR 376
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 441 IQKESTLHLVLR 452
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11 IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 61 IQKESTLHLVLR 72
          I   ST+H+V+R
Sbjct: 70 ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 137 IQKESTLHLVLR 148
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 213 IQKESTLHLVLR 224
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 289 IQKESTLHLVLR 300
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 365 IQKESTLHLVLR 376
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 441 IQKESTLHLVLR 452
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 5e-23
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 132
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 133 ADYNIQKESTLHLVLRLRGG 152
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 5e-23
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 208
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 209 ADYNIQKESTLHLVLRLRGG 228
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 5e-23
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 284
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 285 ADYNIQKESTLHLVLRLRGG 304
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 5e-23
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 360
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 361 ADYNIQKESTLHLVLRLRGG 380
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 5e-23
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 436
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 437 ADYNIQKESTLHLVLRLRGG 456
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.7 bits (222), Expect = 1e-22
 Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLA 57
          + I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L 
Sbjct: 8  LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 67

Query: 58 DYNIQKESTLHLVLRLRGG 76
             ++  + + ++     G
Sbjct: 68 ALKLKPNTKIMMMGTRESG 86

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 1   MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 59  YNIQKESTLHLVLRLRGG 76
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 77  MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 135 YNIQKESTLHLVLRLRGG 152
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 153 MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 211 YNIQKESTLHLVLRLRGG 228
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 229 MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 287 YNIQKESTLHLVLRLRGG 304
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 305 MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 363 YNIQKESTLHLVLRLRGG 380
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 381 MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 439 YNIQKESTLHLVLRLRGG 456
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 61 IQKESTLHLVLRLR 74
          ++   T+HLV++ +
Sbjct: 67 VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 137 IQKESTLHLVLRLR 150
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 213 IQKESTLHLVLRLR 226
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 289 IQKESTLHLVLRLR 302
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 365 IQKESTLHLVLRLR 378
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 441 IQKESTLHLVLRLR 454
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2  IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 61 IQKESTLHL 69
          +  ++ L L
Sbjct: 62 VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 137 IQKESTLHL 145
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 213 IQKESTLHL 221
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 289 IQKESTLHL 297
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 365 IQKESTLHL 373
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 441 IQKESTLHL 449
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 381 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 432
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 433 GRTLADYNI------QKESTLHLVLRLRGGE 457
            +T+ DY           +T+H++++    E
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQAPVTE 98

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.1 bits (213), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 1  MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 52
          ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8  LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 53 GRTLADYNI------QKESTLHLVLR 72
           +T+ DY           +T+H++++
Sbjct: 68 SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.1 bits (213), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 77  MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 128
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 129 GRTLADYNI------QKESTLHLVLR 148
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.1 bits (213), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 153 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 204
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 205 GRTLADYNI------QKESTLHLVLR 224
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.1 bits (213), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 229 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 280
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 281 GRTLADYNI------QKESTLHLVLR 300
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.1 bits (213), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 305 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 356
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 357 GRTLADYNI------QKESTLHLVLR 376
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 4e-21
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 76  GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 127
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 128 DGRTLADYNIQKESTLHLVLRLRGGMQ 154
           +   L  Y +     +H++     G  
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 4e-21
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 152 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 203
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 204 DGRTLADYNIQKESTLHLVLRLRGGMQ 230
           +   L  Y +     +H++     G  
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 4e-21
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 228 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 279
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 280 DGRTLADYNIQKESTLHLVLRLRGGMQ 306
           +   L  Y +     +H++     G  
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 4e-21
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 304 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 355
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 356 DGRTLADYNIQKESTLHLVLRLRGGMQ 382
           +   L  Y +     +H++     G  
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 5e-21
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 380 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 431
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 432 DGRTLADYNIQKESTLHLVLRLRGG 456
           +   L  Y +     +H++     G
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSG 91

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.2 bits (208), Expect = 1e-20
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 8/86 (9%)

Query: 1  MQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LED 52
          + +F+ + L           S TI   K K++   G P     L   G          ++
Sbjct: 8  VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67

Query: 53 GRTLADYNIQKESTLHLVLRLRGGMQ 78
             L  Y +     +H++     G  
Sbjct: 68 DALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 1  MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 59 YNIQKESTLHLVLRLRGG 76
            +       ++   +  
Sbjct: 78 QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 77  MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 135 YNIQKESTLHLVLRLRGG 152
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 153 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 211 YNIQKESTLHLVLRLRGG 228
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 229 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 287 YNIQKESTLHLVLRLRGG 304
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 305 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 363 YNIQKESTLHLVLRLRGG 380
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 381 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 439 YNIQKESTLHLVLRLRGG 456
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 57
               + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18 NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 58 DYNIQKESTLHLV 70
           Y+++    L + 
Sbjct: 78 FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 133
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 134 DYNIQKESTLHLV 146
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 209
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 210 DYNIQKESTLHLV 222
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 234 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 285
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 286 DYNIQKESTLHLV 298
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 361
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 362 DYNIQKESTLHLV 374
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 437
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 438 DYNIQKESTLHLV 450
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 75  GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 134 DYNIQKESTLHLVLRLRGG 152
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 151 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 210 DYNIQKESTLHLVLRLRGG 228
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 227 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 286 DYNIQKESTLHLVLRLRGG 304
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 303 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 362 DYNIQKESTLHLVLRLRGG 380
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 379 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 438 DYNIQKESTLHLVLRLRGG 456
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.9 bits (189), Expect = 4e-18
 Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + +         ++V    T   +K KI    G+PP  Q++++    + + +TL +  
Sbjct: 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLREIK 75

Query: 61 IQKESTLHLVLRLRGG 76
          +   + + +V     G
Sbjct: 76 VTSGAKIMVVGSTISG 91

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5  INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 61 IQKESTLHLVLRLRGG 76
          ++    +       GG
Sbjct: 64 MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 137 IQKESTLHLVLRLRGG 152
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 213 IQKESTLHLVLRLRGG 228
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 289 IQKESTLHLVLRLRGG 304
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 365 IQKESTLHLVLRLRGG 380
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 441 IQKESTLHLVLRLRGG 456
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 136 NIQKESTLHLV 146
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 212 NIQKESTLHLV 222
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 288 NIQKESTLHLV 298
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 364 NIQKESTLHLV 374
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 440 NIQKESTLHLV 450
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.8 bits (186), Expect = 1e-17
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8  YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 61 IQKESTLHLV 70
          ++   T+ ++
Sbjct: 67 MKNGMTVLMM 76

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 76  GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 129
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 130 RTLADYNIQKESTLHLVLR 148
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 152 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 205
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 206 RTLADYNIQKESTLHLVLR 224
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 228 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 281
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 282 RTLADYNIQKESTLHLVLR 300
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 304 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 357
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 358 RTLADYNIQKESTLHLVLR 376
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 380 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 433
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 434 RTLADYNIQKESTLHLVLR 452
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (175), Expect = 2e-16
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 1  MQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 54
          + + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E   
Sbjct: 2  LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMET 60

Query: 55 TLADYNIQKESTLHLVLR 72
           L+   IQ    + L+ +
Sbjct: 61 PLSALGIQDGCRVMLIGK 78

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 61 IQKESTLHLVLRLRG 75
          +++E  + +     G
Sbjct: 63 MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 137 IQKESTLHLVLRLRG 151
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 213 IQKESTLHLVLRLRG 227
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 289 IQKESTLHLVLRLRG 303
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 365 IQKESTLHLVLRLRG 379
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 441 IQKESTLHLVLRLRG 455
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 9e-17
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 439
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 440 NIQKESTLHLVLRLRGGE 457
            ++    +H V    G E
Sbjct: 72  GVRDGYRIHAVDVTGGNE 89

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 7  TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 59
            T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12 NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 60 NIQKESTLHLVLRLRG 75
           ++    +H V    G
Sbjct: 72 GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 83  TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 135
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 136 NIQKESTLHLVLRLRG 151
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 211
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 212 NIQKESTLHLVLRLRG 227
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 287
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 288 NIQKESTLHLVLRLRG 303
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 363
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 364 NIQKESTLHLVLRLRG 379
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.85
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.84
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.83
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.83
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.82
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.82
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.82
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.81
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.8
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.8
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.79
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.78
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.78
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.76
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.76
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.76
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.75
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.75
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.75
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.75
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.74
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.74
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.74
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.73
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.72
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.72
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.72
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.71
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.68
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.68
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.68
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.67
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.67
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.66
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.66
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.65
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.65
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.65
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.64
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.64
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.63
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.63
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.61
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.61
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.59
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.59
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.58
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.57
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.57
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.56
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.55
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.55
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.54
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.52
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.5
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.5
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.5
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.49
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.43
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.4
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.39
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.33
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.33
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.32
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.23
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.2
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.18
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.15
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.08
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.29
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.16
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.83
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.55
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	96.46
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	96.27
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.24
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.33
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	95.32
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.89
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	94.79
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	94.67
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	90.86
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	88.18
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	87.78
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	83.57
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	83.01
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	82.75
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	82.33
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	81.37

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.7e-22  Score=149.63  Aligned_cols=75  Identities=33%  Similarity=0.593  Sum_probs=73.5

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|||++.+|++++++|+++|||.+||++|+++.|+|+++|+|+|+|++|+|+.+|++|+|.++|++|+++++++
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999998875

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=2e-21  Score=145.10  Aligned_cols=73  Identities=62%  Similarity=0.943  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|++++|++++++|+++|||.++|++|+++.|+|+++|+|+|+|++|+|+.||++|+|.++|++|+++|+
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999874

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.6e-21  Score=143.78  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=75.0

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      |+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||+++|.+||
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999999998

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.4e-21  Score=144.36  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=74.0

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      |||||++++|++++++|++++||.+||++|+.+.|+|+++|+|+|+|+.|+|+.||++|+|.++|++||+++++++
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988763

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.8e-21  Score=144.78  Aligned_cols=73  Identities=34%  Similarity=0.560  Sum_probs=71.3

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |||||++.+|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.||++|+|.++|++|+++|+
T Consensus         4 ~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           4 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999998874

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=145.89  Aligned_cols=80  Identities=34%  Similarity=0.532  Sum_probs=77.7

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      +..|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||++.|.++||
T Consensus         5 s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~gp   84 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP   84 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred             CCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCCCC
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999886

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.5e-21  Score=147.60  Aligned_cols=75  Identities=33%  Similarity=0.510  Sum_probs=72.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|||++++|++++++|.+++||.+||++|+++.|||+++|+|+|+|++|+|++||++|+|.+++++||+.+.++
T Consensus         8 mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~   82 (87)
T d1wh3a_           8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred             EEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987654

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.4e-20  Score=140.62  Aligned_cols=76  Identities=34%  Similarity=0.614  Sum_probs=74.1

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      .|.|+||+.+|++|+++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||++.|.||
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999876

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=141.55  Aligned_cols=73  Identities=37%  Similarity=0.647  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCc-EEEEE-eecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~-~~~~~-v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|||++++|+ +++++ +++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++.
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            89999999996 89986 999999999999999999999999999999999999999999999999999999875

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=3.2e-20  Score=138.44  Aligned_cols=73  Identities=62%  Similarity=0.943  Sum_probs=71.3

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      |+|+||+.+|++++++|+|++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||+++|.
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999873

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.7e-20  Score=137.21  Aligned_cols=75  Identities=33%  Similarity=0.535  Sum_probs=72.8

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      ++|+|+||+.+|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||+++|.
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999873

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.4e-21  Score=141.11  Aligned_cols=72  Identities=35%  Similarity=0.613  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|++|+|+++|++|+| +++++||+++.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            8999999999999999999999999999999999999999999999999999999999999 57999998764

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.6e-20  Score=138.11  Aligned_cols=73  Identities=37%  Similarity=0.622  Sum_probs=70.1

Q ss_pred             CeEEEEcCCC-cEEEE-EeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g-~~~~~-~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|++++| +++++ .|++++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.||++|+|.+++++||++++
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            8999999999 68998 4999999999999999999999999999999999999999999999999999999875

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.8e-20  Score=139.89  Aligned_cols=74  Identities=28%  Similarity=0.525  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~   74 (458)
                      |||+|++.+|++++++|+++|||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|+|.+++++||+++.+
T Consensus         4 ~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1           4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999998654

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=136.68  Aligned_cols=77  Identities=27%  Similarity=0.469  Sum_probs=74.1

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      .+|+|+||+.+|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||++++++.
T Consensus         2 ~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p~   78 (80)
T d1ttna1           2 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV   78 (80)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             CeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999988654

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.3e-19  Score=133.36  Aligned_cols=73  Identities=37%  Similarity=0.647  Sum_probs=70.1

Q ss_pred             eeEEEEcCCCc-EEEEE-ecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          381 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       381 ~~i~vk~~~g~-~~~~~-v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      |+|+||+.+|+ ++++. +++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++||+++|+
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            89999999996 78885 999999999999999999999999999999999999999999999999999999986

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-18  Score=130.41  Aligned_cols=73  Identities=37%  Similarity=0.622  Sum_probs=69.4

Q ss_pred             eeEEEEcCCC-cEEEE-EecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          381 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       381 ~~i~vk~~~g-~~~~~-~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      |+|+||+.+| +++++ .|+|++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||+++|.
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            8999999999 56777 5999999999999999999999999999999999999999999999999999999874

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=2e-19  Score=133.71  Aligned_cols=70  Identities=23%  Similarity=0.437  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccccccccccee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~   70 (458)
                      |+|+|++..|++++++|.++|||.++|++|+++.|+|+++|+|+|+|+.|+|+.||++|+|.+++++||.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEE
Confidence            6899999999999999999999999999999999999999999999999999999999999999999985

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.6e-19  Score=133.18  Aligned_cols=72  Identities=35%  Similarity=0.613  Sum_probs=69.1

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      |+|+||+.+|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +|++||++.|.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            7899999999999999999999999999999999999999999999999999999999999 58999987765

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.5e-18  Score=134.95  Aligned_cols=75  Identities=31%  Similarity=0.593  Sum_probs=71.2

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC---CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      |+|+||+.+|++|.++|++++||.+||++|+++.|   +|+++|+|+|+|+.|+|+.||++|+|++|++||+++++..
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~~   78 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCCC
Confidence            89999999999999999999999999999999876   7899999999999999999999999999999999987554

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.3e-18  Score=129.27  Aligned_cols=71  Identities=23%  Similarity=0.431  Sum_probs=69.1

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      |+|+|++..|+++.++|+|++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||+..
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999864

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-18  Score=137.08  Aligned_cols=74  Identities=31%  Similarity=0.606  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccC---CCCCceEEEEeeeeccCCCCccccccccccccceeEeec
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~g---ip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~   74 (458)
                      |+|+|++++|++++++|+++|||.+||++|+++.|   +|+++|+|+|+|+.|+|+.||++|+|.+++++|++++.+
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~   77 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCC
Confidence            99999999999999999999999999999998765   899999999999999999999999999999999988543

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-18  Score=129.05  Aligned_cols=72  Identities=33%  Similarity=0.439  Sum_probs=69.9

Q ss_pred             eEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE--cCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       382 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~--~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      +|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|  +|+.|+|+.+|++|||++|++||+++++
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEEC
Confidence            68999999999999999999999999999999999999999999  6999999999999999999999999876

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-18  Score=130.77  Aligned_cols=73  Identities=32%  Similarity=0.572  Sum_probs=70.0

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC---CCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      .|+|+||+.+|+.|.++|+|++||++||++|+++.|   +|+++|+|+|+|+.|+|++||++|+|++|++|++++.
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~vs   77 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT   77 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEEC
Confidence            589999999999999999999999999999999988   8999999999999999999999999999999998863

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=4.2e-18  Score=126.61  Aligned_cols=73  Identities=33%  Similarity=0.538  Sum_probs=68.2

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      .|+|+|++. ++.|.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++.++
T Consensus         1 si~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~~   73 (73)
T d2bwfa1           1 SLNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   73 (73)
T ss_dssp             EEEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEeeC
Confidence            478999986 4568999999999999999999999999999999999999999999999999999999998753

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.9e-18  Score=129.40  Aligned_cols=72  Identities=33%  Similarity=0.444  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEE--eeeeccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~--~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      +||.|++++|++++++|++++||.+||++|+++.|+|+++|+|+|  .|+.|+|+.+|++|+|.+++++||+++
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEE
Confidence            589999999999999999999999999999999999999999999  599999999999999999999999875

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.9e-18  Score=129.36  Aligned_cols=78  Identities=32%  Similarity=0.419  Sum_probs=72.4

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      +..|+|+|++..+ .+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++||+++|.+..
T Consensus         5 ~~~i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~~   82 (84)
T d1yqba1           5 PHLIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR   82 (84)
T ss_dssp             TTEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             CCEEEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCCC
Confidence            3459999999865 57999999999999999999999999999999999999999999999999999999999987654

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2e-18  Score=135.42  Aligned_cols=91  Identities=22%  Similarity=0.255  Sum_probs=78.9

Q ss_pred             ccccccCCCeEEEEEeec----CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCc
Q 012714          361 ADYNIQKESTLHLVLRLR----GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL  436 (458)
Q Consensus       361 ~~y~I~~~~~l~l~~~~~----~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL  436 (458)
                      ++|+....+.-.++++..    ..++|+|++..|+.+.++|+|++||++||++|+++.|+|+++|+|+|+|+.|+|+.||
T Consensus         5 ~~~~~~~ss~~~~~p~~~~~~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL   84 (100)
T d1uh6a_           5 SHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSL   84 (100)
T ss_dssp             CCCCCCCCCCCSSCCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBH
T ss_pred             cccccccCCcccccCCCCCCCCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCH
Confidence            345555555555554432    2379999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEEEEE
Q 012714          437 ADYNIQKESTLHLVL  451 (458)
Q Consensus       437 ~~~~i~~~~~i~~~~  451 (458)
                      ++|+|++|++|+|..
T Consensus        85 ~dygI~~GstI~L~~   99 (100)
T d1uh6a_          85 GDYEIHDGMNLELYY   99 (100)
T ss_dssp             HHHTCCTTEEEEEEC
T ss_pred             HHcCCCCCCEEEEEE
Confidence            999999999999875

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.1e-18  Score=129.70  Aligned_cols=71  Identities=32%  Similarity=0.587  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccC---CCCCceEEEEeeeeccCCCCccccccccccccceeE
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~g---ip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~   71 (458)
                      |+|+|++++|++++++|++++||.++|++|+++.|   +|+++|+|+|+|+.|+|+.||++|+|.+++++++.+
T Consensus         3 ~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            89999999999999999999999999999999887   999999999999999999999999999999998865

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.5e-18  Score=128.35  Aligned_cols=68  Identities=31%  Similarity=0.646  Sum_probs=66.3

Q ss_pred             CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       388 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      ++|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++||+++|+||
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999987

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=4.9e-18  Score=126.26  Aligned_cols=71  Identities=34%  Similarity=0.558  Sum_probs=67.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |+|.|++. |++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+.+
T Consensus         2 i~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            68999985 668999999999999999999999999999999999999999999999999999999999864

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=7.3e-18  Score=132.16  Aligned_cols=91  Identities=22%  Similarity=0.255  Sum_probs=81.0

Q ss_pred             cccccccccccceeEeec----CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcch
Q 012714           57 ADYNIQKESTLHLVLRLR----GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL  132 (458)
Q Consensus        57 ~~y~i~~~sti~l~~~~~----~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL  132 (458)
                      ++|+..+.|.-+++.+..    ..++|+|++..|+.+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|
T Consensus         5 ~~~~~~~ss~~~~~p~~~~~~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL   84 (100)
T d1uh6a_           5 SHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSL   84 (100)
T ss_dssp             CCCCCCCCCCCSSCCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBH
T ss_pred             cccccccCCcccccCCCCCCCCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCH
Confidence            466777777766665433    2379999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccceeEEE
Q 012714          133 ADYNIQKESTLHLVL  147 (458)
Q Consensus       133 ~~~~i~~~s~i~l~~  147 (458)
                      ++|+|.+|++|+|..
T Consensus        85 ~dygI~~GstI~L~~   99 (100)
T d1uh6a_          85 GDYEIHDGMNLELYY   99 (100)
T ss_dssp             HHHTCCTTEEEEEEC
T ss_pred             HHcCCCCCCEEEEEE
Confidence            999999999999864

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-17  Score=128.00  Aligned_cols=74  Identities=34%  Similarity=0.476  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++.++ +++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++.+.
T Consensus         8 i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           8 IKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCC
Confidence            7999999866 5899999999999999999999999999999999999999999999999999999999987543

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.6e-17  Score=128.86  Aligned_cols=74  Identities=32%  Similarity=0.404  Sum_probs=69.5

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEE
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      +..|+|+|++.+++ ++++|++++||.+||++|++++|+|+++|+|+|+|++|+|+.+|++|+|++|++|||++|
T Consensus        30 ~~~i~V~Vk~~~~~-~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          30 PKIIKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCCEEEEEECSSCE-EEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             CCeEEEEEECCCcc-EEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            34599999998765 789999999999999999999999999999999999999999999999999999999875

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.4e-17  Score=126.94  Aligned_cols=75  Identities=27%  Similarity=0.307  Sum_probs=69.9

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      +..|+|+|++.+++ +.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++||+++|.
T Consensus         8 ~~~i~v~Vk~~~~~-~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1           8 SRIIRVSVKTPQDC-HEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             SCEEEEEEECSSSE-EEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             CCeEEEEEEcCCCc-EEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEeC
Confidence            45699999998655 6899999999999999999999999999999999999999999999999999999998874

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=3.8e-17  Score=130.65  Aligned_cols=69  Identities=33%  Similarity=0.506  Sum_probs=67.2

Q ss_pred             CCcEEEEEecC-CCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          389 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       389 ~g~~~~~~v~~-~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      +|+.+++.|.| ++||.+||++|+++.|+|++.|+|+|+|+.|+|+.||++|+|++|++|||.+|.|||+
T Consensus        39 ~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG~  108 (111)
T d1we6a_          39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSGP  108 (111)
T ss_dssp             SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCSS
T ss_pred             CCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCCCC
Confidence            58999999997 8999999999999999999999999999999999999999999999999999999996

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=3.6e-17  Score=129.10  Aligned_cols=79  Identities=23%  Similarity=0.428  Sum_probs=72.3

Q ss_pred             cCceeEEE----EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecC-CCCCccccCCCCCCEEEEEEE
Q 012714          378 RGGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       378 ~~~~~i~v----k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~-d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      +..|.|+|    ++.+|..|.++|++++||.+||++|+.+.|+|+++|+|+|+|+.|. |..||++|||++|++|+++.|
T Consensus         5 ~~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             cCCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            34689999    7888999999999999999999999999999999999999999996 567999999999999999877


Q ss_pred             ecCC
Q 012714          453 LRGG  456 (458)
Q Consensus       453 ~~~g  456 (458)
                      ..++
T Consensus        85 ~~~~   88 (102)
T d1v5oa_          85 DNVG   88 (102)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6654

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=4.6e-17  Score=126.61  Aligned_cols=75  Identities=27%  Similarity=0.436  Sum_probs=69.0

Q ss_pred             CeEEEEcCCCcEE-EEEeecCccHHHHHHHhhc-----ccCCC--CCceEEEEeeeeccCCCCcccccccccc------c
Q 012714            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES------T   66 (458)
Q Consensus         1 ~~i~~~~~~g~~~-~~~v~~~dtv~~~K~~i~~-----~~gip--~~~q~l~~~g~~L~d~~tl~~y~i~~~s------t   66 (458)
                      |+|.|++++|+.+ ++.|++++||.+||++|++     ++|+|  +++|+|+|+|+.|+|++||.+|+|.+++      +
T Consensus         8 i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~~~t   87 (101)
T d1se9a_           8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   87 (101)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCCceE
Confidence            6899999999987 6999999999999999975     48899  7899999999999999999999999997      8


Q ss_pred             cceeEeecC
Q 012714           67 LHLVLRLRG   75 (458)
Q Consensus        67 i~l~~~~~~   75 (458)
                      +||+++++.
T Consensus        88 mHlVvrpp~   96 (101)
T d1se9a_          88 MHVIIQAPV   96 (101)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEeCCCC
Confidence            999987654

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.7e-17  Score=122.66  Aligned_cols=68  Identities=31%  Similarity=0.646  Sum_probs=65.1

Q ss_pred             cCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEeec
Q 012714           84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (458)
Q Consensus        84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~~~  151 (458)
                      ++|+.++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++.+|
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            68999999999999999999999999999999999999999999999999999999999999987653

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.66  E-value=3.2e-16  Score=121.83  Aligned_cols=78  Identities=24%  Similarity=0.411  Sum_probs=71.2

Q ss_pred             cCceeEEEEcCCCcEE-EEEecCCCcHHHHHHHHHhh-----cCCC--CCceEEEEcCeecCCCCCccccCCCCCC----
Q 012714          378 RGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES----  445 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~~~~--~~~q~Li~~G~~L~d~~tL~~~~i~~~~----  445 (458)
                      .+.|.|.||+.+|+.+ .+.|++++||.+||++|++.     .|+|  +++|||||+|+.|+|++||++|+|.+|+    
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~   84 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   84 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCC
Confidence            5689999999999987 69999999999999999876     5676  7899999999999999999999999998    


Q ss_pred             --EEEEEEEecC
Q 012714          446 --TLHLVLRLRG  455 (458)
Q Consensus       446 --~i~~~~~~~~  455 (458)
                        ++|+++|...
T Consensus        85 ~~tmHlVvrpp~   96 (101)
T d1se9a_          85 VTTMHVIIQAPV   96 (101)
T ss_dssp             CEEEEEEECCCS
T ss_pred             ceEEEEEeCCCC
Confidence              9999998643

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.5e-16  Score=123.54  Aligned_cols=76  Identities=25%  Similarity=0.359  Sum_probs=69.1

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecC-CCCCccccCCCCCCEEEEEEEecCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~-d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      +..|+|+||+++|+.+.++|++++||.+||++|+   ..++++|+|+|+|+.|. |.++|++|+|++|++||++++++++
T Consensus         5 ~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~~   81 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA   81 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCCC
Confidence            4579999999999999999999999999999986   45789999999999996 5689999999999999999887654

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=2.6e-17  Score=131.69  Aligned_cols=75  Identities=31%  Similarity=0.455  Sum_probs=69.6

Q ss_pred             eEEEEc-CCCcEEEEEeec-CccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEeecCC
Q 012714            2 QIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (458)
Q Consensus         2 ~i~~~~-~~g~~~~~~v~~-~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~~~~   76 (458)
                      +|+|++ .+|+++++.|.+ +|||.+||++|+++.|+|+++|+|+|.|+.|+|+.||++|+|.++++|||+++++++
T Consensus        31 ~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG  107 (111)
T d1we6a_          31 RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG  107 (111)
T ss_dssp             EECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred             EEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCCC
Confidence            556665 469999999987 999999999999999999999999999999999999999999999999999998865

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=3.1e-17  Score=130.39  Aligned_cols=76  Identities=24%  Similarity=0.439  Sum_probs=71.7

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceE---------------EEEcCeecCCC-CCccccCC
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIFAGKQLEDG-RTLADYNI  441 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~---------------Li~~G~~L~d~-~tL~~~~i  441 (458)
                      +..|+|+|++.+|+.+.++|++++||.+||++|+++.++|+++|+               |+|+|+.|.|+ .||++|+|
T Consensus         5 ss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI   84 (105)
T d1v2ya_           5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI   84 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCC
Confidence            457999999999999999999999999999999999999999997               99999999776 58999999


Q ss_pred             CCCCEEEEEEEe
Q 012714          442 QKESTLHLVLRL  453 (458)
Q Consensus       442 ~~~~~i~~~~~~  453 (458)
                      ++|++||++.|.
T Consensus        85 ~~g~~l~lv~r~   96 (105)
T d1v2ya_          85 RNRDEVSFIKKL   96 (105)
T ss_dssp             CSSEEEEEEECS
T ss_pred             CCCCEEEEEEec
Confidence            999999999875

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.9e-16  Score=127.35  Aligned_cols=72  Identities=24%  Similarity=0.436  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHh--------hcccCCCCCceEEEEeeeeccCCCCccccccccccc--ccee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST--LHLV   70 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i--------~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~st--i~l~   70 (458)
                      |+|+|++++|+++++.|+++|||.+||++|        +++.|+|+++|+|+|.|+.|+|+.+|.+|+|.++++  +||+
T Consensus        17 i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~lhlv   96 (116)
T d1wgha_          17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEEEEE
Confidence            689999999999999999999999999999        688999999999999999999999999999999987  6666


Q ss_pred             Ee
Q 012714           71 LR   72 (458)
Q Consensus        71 ~~   72 (458)
                      ++
T Consensus        97 ~r   98 (116)
T d1wgha_          97 AR   98 (116)
T ss_dssp             EC
T ss_pred             eC
Confidence            65

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=5e-16  Score=124.82  Aligned_cols=76  Identities=22%  Similarity=0.385  Sum_probs=69.2

Q ss_pred             ecCceeEEEEcCCCcEEEEEecCCCcHHHHHHHH--------HhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCE--
Q 012714          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST--  446 (458)
Q Consensus       377 ~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i--------~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~--  446 (458)
                      ..+.|+|+|++++|+.+.|.|+|++||.+||++|        +++.++|+++|||||+|+.|+|+.||++|+|.+|++  
T Consensus        13 ~~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~   92 (116)
T d1wgha_          13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV   92 (116)
T ss_dssp             CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred             CCCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEE
Confidence            3567899999999999999999999999999999        567789999999999999999999999999999987  


Q ss_pred             EEEEEE
Q 012714          447 LHLVLR  452 (458)
Q Consensus       447 i~~~~~  452 (458)
                      ||++.|
T Consensus        93 lhlv~r   98 (116)
T d1wgha_          93 MHLVAR   98 (116)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            555555

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=6.3e-17  Score=123.23  Aligned_cols=72  Identities=28%  Similarity=0.346  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEee
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~~   73 (458)
                      |+|+|++++++ ++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++.
T Consensus        11 i~v~Vk~~~~~-~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1          11 IRVSVKTPQDC-HEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             EEEEEECSSSE-EEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             EEEEEEcCCCc-EEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEeC
Confidence            78999998665 6899999999999999999999999999999999999999999999999999999998763

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-16  Score=125.85  Aligned_cols=71  Identities=32%  Similarity=0.437  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |+|+|++.++ +++++|++++||.+||++|+++.|+|+++|+|+|+|++|+|+.+|++|+|.++++|||+++
T Consensus        33 i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          33 IKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             EEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             EEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            7899999876 5899999999999999999999999999999999999999999999999999999999874

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3.3e-16  Score=122.42  Aligned_cols=75  Identities=19%  Similarity=0.276  Sum_probs=70.0

Q ss_pred             cCceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      +..|+|+||+.+++.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+.+.
T Consensus         5 s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t~   79 (96)
T d1wgga_           5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred             CCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEeeC
Confidence            45789999999999889999999999999999999999999999999999999986 8999999999999987543

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.4e-16  Score=118.90  Aligned_cols=80  Identities=28%  Similarity=0.455  Sum_probs=70.3

Q ss_pred             cCceeEEEEcCCCc--EEEEEecCCCcHHHHHHHHHhhcC--CCCCceEEEEcCeecCCCCCccccCCCC--CCEEEEEE
Q 012714          378 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQK--ESTLHLVL  451 (458)
Q Consensus       378 ~~~~~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~--~~~~~q~Li~~G~~L~d~~tL~~~~i~~--~~~i~~~~  451 (458)
                      +..|+|+|++++++  .+.++|++++||.+||++|+++.+  +|+++|||||+|+.|.|+.+|++|+.+.  +.+|||++
T Consensus         5 s~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~   84 (93)
T d1wgda_           5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred             CCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEe
Confidence            45689999999875  488999999999999999999976  8999999999999999999999997654  45999998


Q ss_pred             EecCCC
Q 012714          452 RLRGGE  457 (458)
Q Consensus       452 ~~~~g~  457 (458)
                      +.+++|
T Consensus        85 ~~~~~p   90 (93)
T d1wgda_          85 NVKSGP   90 (93)
T ss_dssp             CCCCCC
T ss_pred             cCCCCC
Confidence            877664

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.2e-16  Score=122.85  Aligned_cols=64  Identities=28%  Similarity=0.440  Sum_probs=60.0

Q ss_pred             eEEEEcCCCc-EEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCcccccccccc
Q 012714            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES   65 (458)
Q Consensus         2 ~i~~~~~~g~-~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~s   65 (458)
                      ||||+...|+ +++++|++++||.+||++|++++|||+++|+|+|+|++|+|++||++|+|..++
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~   65 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQT   65 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTT
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCccc
Confidence            6999997775 889999999999999999999999999999999999999999999999996655

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=7.7e-17  Score=128.09  Aligned_cols=74  Identities=23%  Similarity=0.416  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceE---------------EEEeeeeccCC-CCccccccccc
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIFAGKQLEDG-RTLADYNIQKE   64 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~---------------l~~~g~~L~d~-~tl~~y~i~~~   64 (458)
                      |+|+|++.+|++++++|++++||.+||++|+++.|+|+++|+               |+|+|+.|.|+ .||.+|+|.++
T Consensus         8 M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~g   87 (105)
T d1v2ya_           8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCCC
Confidence            899999999999999999999999999999999999999998               99999999765 68999999999


Q ss_pred             cccceeEeec
Q 012714           65 STLHLVLRLR   74 (458)
Q Consensus        65 sti~l~~~~~   74 (458)
                      +++||+.+++
T Consensus        88 ~~l~lv~r~~   97 (105)
T d1v2ya_          88 DEVSFIKKLG   97 (105)
T ss_dssp             EEEEEEECSC
T ss_pred             CEEEEEEecC
Confidence            9999998765

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=6.5e-16  Score=121.76  Aligned_cols=77  Identities=22%  Similarity=0.425  Sum_probs=70.7

Q ss_pred             cCCeEEEE----EecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccC-CCcchhhcccccccceeEEEE
Q 012714           74 RGGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLR  148 (458)
Q Consensus        74 ~~~~~i~v----k~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~~s~i~l~~~  148 (458)
                      ..+|.|+|    |.+++.+++++|++++||.+||++|+.+.|+|+++|+|+|+|+.|. |+.+|++|||.+|++|+|+.+
T Consensus         5 ~~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             cCCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            35799999    7788999999999999999999999999999999999999999995 668999999999999999876


Q ss_pred             ee
Q 012714          149 LR  150 (458)
Q Consensus       149 ~~  150 (458)
                      ..
T Consensus        85 ~~   86 (102)
T d1v5oa_          85 DN   86 (102)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.4e-16  Score=120.39  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=66.6

Q ss_pred             eeEEE--EcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          381 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       381 ~~i~v--k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      |+|++  +...|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|++||++|+|++|++|+++..+
T Consensus        18 i~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~   92 (100)
T d1wjua_          18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK   92 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred             EEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcC
Confidence            44555  55779999999999999999999999999999999999999999999999999999999999887643

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.6e-15  Score=117.62  Aligned_cols=72  Identities=25%  Similarity=0.349  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeecc-CCCCccccccccccccceeEeecC
Q 012714            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRG   75 (458)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~-d~~tl~~y~i~~~sti~l~~~~~~   75 (458)
                      |+|+|++++|+.+.++|++++||.+||++|++   +|+++|+|+|+|+.|. |.++|.+|+|.++++||++++.++
T Consensus         8 m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~~---~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~   80 (95)
T d1wiaa_           8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFP---GQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHSS---STTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHhc---CCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCC
Confidence            79999999999999999999999999999964   5789999999999996 568999999999999999886543

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.3e-15  Score=117.67  Aligned_cols=79  Identities=22%  Similarity=0.419  Sum_probs=71.2

Q ss_pred             cCceeEEEEcCCCcEEEE-EecCCCcHHHHHHHHHhhcCCCCCceEEE---EcCeecCCCCCccccCCCCCCEEEEEEEe
Q 012714          378 RGGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (458)
Q Consensus       378 ~~~~~i~vk~~~g~~~~~-~v~~~~tV~~lK~~i~~~~~~~~~~q~Li---~~G~~L~d~~tL~~~~i~~~~~i~~~~~~  453 (458)
                      +..|+|+||.. |+.+.+ +|++++||.+||++|++++|+|+++|+|+   |.|+.|+|+.+|++|+|++|++|||+.+.
T Consensus         5 s~~~~i~Vk~~-~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_           5 SSGLPIIVKWG-GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCSCCEEEEET-TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             CCcEEEEEEEC-CeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeC
Confidence            56799999974 555666 69999999999999999999999999999   68999999999999999999999999887


Q ss_pred             cCCC
Q 012714          454 RGGE  457 (458)
Q Consensus       454 ~~g~  457 (458)
                      ..||
T Consensus        84 ~~~p   87 (90)
T d1v5ta_          84 ESGP   87 (90)
T ss_dssp             SSSS
T ss_pred             CCCC
Confidence            6664

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.9e-16  Score=120.82  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=67.2

Q ss_pred             CeEEE--EcCCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeeeeccCCCCccccccccccccceeEe
Q 012714            1 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~--~~~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |+||+  +...|++++++|++++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.||++|+|.++++++++..
T Consensus        18 i~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~   91 (100)
T d1wjua_          18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred             EEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEc
Confidence            57888  4578999999999999999999999999999999999999999999999999999999999987653

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2e-15  Score=117.93  Aligned_cols=74  Identities=19%  Similarity=0.285  Sum_probs=69.3

Q ss_pred             cCCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEE
Q 012714           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (458)
Q Consensus        74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~  148 (458)
                      ...|+|+||..+++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+.+
T Consensus         5 s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t   78 (96)
T d1wgga_           5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred             CCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEee
Confidence            35789999998998889999999999999999999999999999999999999986 799999999999999754

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.7e-15  Score=118.11  Aligned_cols=77  Identities=18%  Similarity=0.320  Sum_probs=70.8

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCCC
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE  457 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g~  457 (458)
                      +.|.|+|+. +++.|.++|++++||.+||++|++.+|+|+++|+|+|+|+ |.|+.||++|+|++|++|+|+.+..+||
T Consensus        16 ~~i~v~V~~-~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~~~gp   92 (95)
T d1v86a_          16 ELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGSTISGP   92 (95)
T ss_dssp             CCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSSCCCC
T ss_pred             cEEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecCCCCC
Confidence            458888885 7889999999999999999999999999999999999997 9999999999999999999987776664

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.54  E-value=1.3e-14  Score=109.06  Aligned_cols=76  Identities=13%  Similarity=0.329  Sum_probs=71.5

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecCC
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~g  456 (458)
                      .+.|.|++ +|+.+.+.|.+++++..||+.++++.|+++++++|+|+|+.|.+++|+++|++++||+|+++++++||
T Consensus         4 ~I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           4 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            46677776 67888899999999999999999999999999999999999999999999999999999999999998

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.5e-15  Score=113.70  Aligned_cols=74  Identities=27%  Similarity=0.432  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCc--EEEEEeecCccHHHHHHHhhcccC--CCCCceEEEEeeeeccCCCCcccccccc--ccccceeEeec
Q 012714            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQK--ESTLHLVLRLR   74 (458)
Q Consensus         1 ~~i~~~~~~g~--~~~~~v~~~dtv~~~K~~i~~~~g--ip~~~q~l~~~g~~L~d~~tl~~y~i~~--~sti~l~~~~~   74 (458)
                      |+|+|++++++  .+++++++++||.+||++|++++|  +|+++|+|+|+|++|+|+.+|.+|....  +.++||+++.+
T Consensus         8 i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~~~   87 (93)
T d1wgda_           8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK   87 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred             EEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEecCC
Confidence            78999999875  489999999999999999999975  9999999999999999999999997654  45899987654

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2e-14  Score=108.35  Aligned_cols=73  Identities=25%  Similarity=0.426  Sum_probs=65.6

Q ss_pred             CeEEEEEecCCcEEEEEE-----eCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccC-CCcchhhcccccccceeEEEEe
Q 012714           76 GMQIFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRL  149 (458)
Q Consensus        76 ~~~i~vk~~~g~~~~l~v-----~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~~s~i~l~~~~  149 (458)
                      +|+|+|+ .++..+++++     ++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|+.+.
T Consensus         1 gi~i~V~-~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1           1 GLTVTVT-HSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             SEEEEEE-CSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             CEEEEEE-ECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEec
Confidence            4789996 6788889988     4688999999999999999999999999999995 6789999999999999998653

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.3e-14  Score=108.10  Aligned_cols=73  Identities=23%  Similarity=0.388  Sum_probs=64.4

Q ss_pred             eeEEEEcCCCcEEEEEe-----cCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecC-CCCCccccCCCCCCEEEEEEEec
Q 012714          381 MQIFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLR  454 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v-----~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~-d~~tL~~~~i~~~~~i~~~~~~~  454 (458)
                      |+|+|+.. ++.+.++|     ++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+++.|+.
T Consensus         2 i~i~V~~~-~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~~   80 (81)
T d1wxva1           2 LTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN   80 (81)
T ss_dssp             EEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred             EEEEEEEC-CeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEecC
Confidence            78888664 56778888     4688999999999999999999999999999996 56899999999999998877653

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=9e-15  Score=113.90  Aligned_cols=72  Identities=18%  Similarity=0.342  Sum_probs=67.6

Q ss_pred             CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEE
Q 012714           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (458)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~  148 (458)
                      ..|.|+|+ ++++.++++|++++||.+||++|++.+|+|+++|+|+|+|+ |+|+.+|++|+|.+|++|+|+.+
T Consensus        16 ~~i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs   87 (95)
T d1v86a_          16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCS
T ss_pred             cEEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEec
Confidence            45889998 79999999999999999999999999999999999999997 89999999999999999999854

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.4e-14  Score=111.84  Aligned_cols=75  Identities=21%  Similarity=0.438  Sum_probs=68.5

Q ss_pred             cCCeEEEEEecCCcEEEE-EEeCCCCHHHHHHHHhHHhCCCCCCeEEE---ecCcccCCCcchhhcccccccceeEEEEe
Q 012714           74 RGGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (458)
Q Consensus        74 ~~~~~i~vk~~~g~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d~~tL~~~~i~~~s~i~l~~~~  149 (458)
                      ...|+|+|| +.|+.+.+ +|++++||.+||++|++++|+|+++|+|+   |.|+.|+|+.+|++|+|.+|++|+|+.+.
T Consensus         5 s~~~~i~Vk-~~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_           5 SSGLPIIVK-WGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCSCCEEEE-ETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             CCcEEEEEE-ECCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeC
Confidence            457899999 57777777 69999999999999999999999999999   68999999999999999999999998654

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.8e-14  Score=110.84  Aligned_cols=74  Identities=27%  Similarity=0.399  Sum_probs=63.6

Q ss_pred             EEEEcCCC-cEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCC-------CCCEEEEEEEec
Q 012714          383 IFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLR  454 (458)
Q Consensus       383 i~vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~-------~~~~i~~~~~~~  454 (458)
                      |+|+...+ +++.++|++++||.+||++|+++.|+++++|+|+|+|+.|+|++||++|||.       ..+++++.++-+
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~~~~   81 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRAD   81 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEEET
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEEecC
Confidence            45555544 4678999999999999999999999999999999999999999999999994       456888888755


Q ss_pred             CC
Q 012714          455 GG  456 (458)
Q Consensus       455 ~g  456 (458)
                      ++
T Consensus        82 ~~   83 (103)
T d2c9wb1          82 DT   83 (103)
T ss_dssp             TE
T ss_pred             CC
Confidence            53

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.2e-13  Score=107.13  Aligned_cols=79  Identities=19%  Similarity=0.280  Sum_probs=70.6

Q ss_pred             CceeEEEEcC-CCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe-------ecCCCCCccccCCCCCCEEEEE
Q 012714          379 GGMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       379 ~~~~i~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~-------~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      ..|.|+|++. ++..++.++++++||.+||++|+..+|+|++.|+|+|.|+       .++|+++|++|++++|++|||+
T Consensus         6 s~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlv   85 (95)
T d1v6ea_           6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             CcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEE
Confidence            4578888874 6667889999999999999999999999999999999887       5889999999999999999998


Q ss_pred             EEecCCC
Q 012714          451 LRLRGGE  457 (458)
Q Consensus       451 ~~~~~g~  457 (458)
                      .+.+.|+
T Consensus        86 d~~p~~~   92 (95)
T d1v6ea_          86 DHSGSGP   92 (95)
T ss_dssp             CCSCCSS
T ss_pred             eCCCCCC
Confidence            8776654

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.3e-13  Score=100.06  Aligned_cols=76  Identities=17%  Similarity=0.402  Sum_probs=73.0

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEEEEecC
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~~~~~~  455 (458)
                      .++|.|++.+|+.+.+.|.+++++..|++..+++.|++++.++|+|+|+.|.+++|++++++++||+|+++.++.|
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~G   77 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   77 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999998765

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2e-13  Score=104.39  Aligned_cols=83  Identities=27%  Similarity=0.356  Sum_probs=65.4

Q ss_pred             CeEEEEEeecCc---eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcC--C-CCCceEEEEcCeecCCCCCccccCCC
Q 012714          369 STLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--I-PPDQQRLIFAGKQLEDGRTLADYNIQ  442 (458)
Q Consensus       369 ~~l~l~~~~~~~---~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--~-~~~~q~Li~~G~~L~d~~tL~~~~i~  442 (458)
                      ++.|+..++.+.   -+..++.++.+. ...+..++||.+||++|+++..  . ++++|+|||+|+.|+|+.||++|+|+
T Consensus         4 s~~~~~~~l~~~p~~pk~~i~~p~~~~-~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~   82 (94)
T d1x1ma1           4 SDWHLAVKLADQPLAPKSILQLPETEL-GEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ   82 (94)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCSS-CSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred             ccceEEEEEccCCCCCcceEECCCCcc-CccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCC
Confidence            556777766444   356666665432 2234568899999999999865  3 46999999999999999999999999


Q ss_pred             CCCEEEEEEE
Q 012714          443 KESTLHLVLR  452 (458)
Q Consensus       443 ~~~~i~~~~~  452 (458)
                      +|++||++.|
T Consensus        83 ~gstihLV~r   92 (94)
T d1x1ma1          83 PGSTVHVLRK   92 (94)
T ss_dssp             TTCEEEEEES
T ss_pred             CCCEEEEEEe
Confidence            9999999875

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.33  E-value=1.7e-12  Score=97.30  Aligned_cols=75  Identities=13%  Similarity=0.339  Sum_probs=69.4

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEEEecCC
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~~~~~~  228 (458)
                      +.|.|+. +|+.+.+.|.++++++.|++.++++.|+|+++++|+|+|+.|+++.|+++|+|++|++|++++++.||
T Consensus         5 I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           5 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            4566654 67788899999999999999999999999999999999999999999999999999999999998876

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=5e-13  Score=102.10  Aligned_cols=84  Identities=27%  Similarity=0.379  Sum_probs=66.2

Q ss_pred             ccccceeEeecCC---eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHh--CCC-CCCeEEEecCcccCCCcchhhccc
Q 012714           64 ESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNI  137 (458)
Q Consensus        64 ~sti~l~~~~~~~---~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~--gip-~~~q~L~~~G~~L~d~~tL~~~~i  137 (458)
                      .|++|+++++.++   -...++..+.+. ...+..+.||.+||++|+++.  ++| +++|+|+|+|+.|+|+.+|++|+|
T Consensus         3 ~s~~~~~~~l~~~p~~pk~~i~~p~~~~-~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I   81 (94)
T d1x1ma1           3 LSDWHLAVKLADQPLAPKSILQLPETEL-GEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGI   81 (94)
T ss_dssp             CCSCCEEEEETTCTTSCCEEECCCCCSS-CSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTC
T ss_pred             cccceEEEEEccCCCCCcceEECCCCcc-CccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCC
Confidence            4788999987765   245566554322 112355889999999999885  454 699999999999999999999999


Q ss_pred             ccccceeEEEE
Q 012714          138 QKESTLHLVLR  148 (458)
Q Consensus       138 ~~~s~i~l~~~  148 (458)
                      .+|++|||+.+
T Consensus        82 ~~gstihLV~r   92 (94)
T d1x1ma1          82 QPGSTVHVLRK   92 (94)
T ss_dssp             CTTCEEEEEES
T ss_pred             CCCCEEEEEEe
Confidence            99999999875

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=6.9e-13  Score=102.80  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=67.2

Q ss_pred             CeEEEEc-CCCcEEEEEeecCccHHHHHHHhhcccCCCCCceEEEEeee-------eccCCCCccccccccccccceeEe
Q 012714            1 MQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVLR   72 (458)
Q Consensus         1 ~~i~~~~-~~g~~~~~~v~~~dtv~~~K~~i~~~~gip~~~q~l~~~g~-------~L~d~~tl~~y~i~~~sti~l~~~   72 (458)
                      |.|||.+ +++..+..++.++.||.+||+||+...|+|+++|+|+|.|+       .++|+.+|.+|++.++++||++.+
T Consensus         8 v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~   87 (95)
T d1v6ea_           8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH   87 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred             EEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEEeC
Confidence            5789998 57778899999999999999999999999999999999987       478899999999999999999875


Q ss_pred             ec
Q 012714           73 LR   74 (458)
Q Consensus        73 ~~   74 (458)
                      .+
T Consensus        88 ~p   89 (95)
T d1v6ea_          88 SG   89 (95)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.2e-11  Score=96.32  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=61.1

Q ss_pred             eeEEEEc---CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCee-------cC-CCCCccccCCCCCCEEEE
Q 012714          381 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE-DGRTLADYNIQKESTLHL  449 (458)
Q Consensus       381 ~~i~vk~---~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~-------L~-d~~tL~~~~i~~~~~i~~  449 (458)
                      ++|+|+.   .+++.++++|++++||.+||.+|+..+|+|++.|+|+|.|+.       |. |+++|.+|+|++|++|++
T Consensus        10 iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V   89 (97)
T d1wjna_          10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEE
Confidence            4555553   457889999999999999999999999999999999999873       43 789999999999999987


Q ss_pred             E
Q 012714          450 V  450 (458)
Q Consensus       450 ~  450 (458)
                      .
T Consensus        90 ~   90 (97)
T d1wjna_          90 R   90 (97)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=2.2e-11  Score=94.73  Aligned_cols=71  Identities=18%  Similarity=0.274  Sum_probs=62.2

Q ss_pred             eEEEEEe---cCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcc-------cC-CCcchhhcccccccceeE
Q 012714           77 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE-DGRTLADYNIQKESTLHL  145 (458)
Q Consensus        77 ~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~-------L~-d~~tL~~~~i~~~s~i~l  145 (458)
                      ++|+|+.   .+++.+++++++++||.+||.+|++.+|+|+++|+|+|.|+.       |+ |+++|.+|+|.+|++|++
T Consensus        10 iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V   89 (97)
T d1wjna_          10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEE
Confidence            5666664   357889999999999999999999999999999999999874       43 789999999999999997


Q ss_pred             EE
Q 012714          146 VL  147 (458)
Q Consensus       146 ~~  147 (458)
                      ..
T Consensus        90 ~~   91 (97)
T d1wjna_          90 RW   91 (97)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3e-11  Score=89.78  Aligned_cols=74  Identities=16%  Similarity=0.384  Sum_probs=70.7

Q ss_pred             CeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCcccCCCcchhhcccccccceeEEEEe
Q 012714           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (458)
Q Consensus        76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~~s~i~l~~~~  149 (458)
                      .++|+|++.+|+.+.+.|.+++++..|++.++++.|+|+++++|+|+|+.|.++.|++++++.+|++|+++.+.
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q   75 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ   75 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECC
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence            47899999999999999999999999999999999999999999999999999999999999999999998754

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.15  E-value=8.5e-11  Score=89.91  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=62.6

Q ss_pred             ceeEEEEc-CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCe-------ecCCCCCccccCCCCCCEEEEEE
Q 012714          380 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVL  451 (458)
Q Consensus       380 ~~~i~vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~-------~L~d~~tL~~~~i~~~~~i~~~~  451 (458)
                      ...+.|.+ .++..++..++++.||.+||++|+..+|+|+..|+|+|.|+       .++|+++|++|++.+|+.||++=
T Consensus         4 ~~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd   83 (90)
T d1t0ya_           4 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD   83 (90)
T ss_dssp             EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred             EEEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEe
Confidence            34555654 34455788899999999999999999999999999999887       56789999999999999999854


Q ss_pred             Eec
Q 012714          452 RLR  454 (458)
Q Consensus       452 ~~~  454 (458)
                      +..
T Consensus        84 ~~~   86 (90)
T d1t0ya_          84 VTG   86 (90)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            443

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.08  E-value=2.2e-10  Score=87.51  Aligned_cols=72  Identities=15%  Similarity=0.225  Sum_probs=60.6

Q ss_pred             eEEEEEe-cCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEEecCc-------ccCCCcchhhcccccccceeEEEE
Q 012714           77 MQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVLR  148 (458)
Q Consensus        77 ~~i~vk~-~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~-------~L~d~~tL~~~~i~~~s~i~l~~~  148 (458)
                      +.+.|.+ .++..+...++++.||.+||++|+..+|+|++.|+|+|.|+       .++|+++|.+||+.+|++||++-.
T Consensus         5 ~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~   84 (90)
T d1t0ya_           5 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   84 (90)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeC
Confidence            3455553 23445677799999999999999999999999999999886       457899999999999999998754

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3e-08  Score=72.02  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=66.5

Q ss_pred             eeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEcCeecCCCCCccccCCCCCCEEEEE
Q 012714          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (458)
Q Consensus       381 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~G~~L~d~~tL~~~~i~~~~~i~~~  450 (458)
                      +.|.|+..+|+.+.+.|.++.+...|....+++.|++++..+++|+|+.+...+|.+++++++||+|.+.
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            5688899999999999999999999999999999999999999999999999999999999999999763

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4e-07  Score=65.83  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=65.7

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEE
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~  222 (458)
                      +.|.|+..+|+.+.+.|.++++.+.|....+++.|+|+...+|+|+|+.+..+.|.+++++++|++|.+.
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            4577888889999999999999999999999999999999999999999999999999999999999874

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.29  E-value=4.8e-07  Score=66.55  Aligned_cols=68  Identities=22%  Similarity=0.282  Sum_probs=55.7

Q ss_pred             EEEEcCCCcEEEEEec-CCCcHHHHHHHHHhhcCCCCCceEEEEc--------------CeecC-CCCCccccCCCCCCE
Q 012714          383 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA--------------GKQLE-DGRTLADYNIQKEST  446 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~~~~~~q~Li~~--------------G~~L~-d~~tL~~~~i~~~~~  446 (458)
                      |.|++.+|.. .++|+ ++.||.+||.+|+++.++|.++|.|-.+              -..|. |..+|++++|.+|++
T Consensus         3 iRiRsrdG~e-Rv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCCce-EEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            6788888875 68996 4789999999999999999999999443              22344 446799999999999


Q ss_pred             EEEEE
Q 012714          447 LHLVL  451 (458)
Q Consensus       447 i~~~~  451 (458)
                      |++..
T Consensus        82 vyL~y   86 (94)
T d1wf9a1          82 VYLAY   86 (94)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            99865

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.16  E-value=1.4e-06  Score=64.07  Aligned_cols=70  Identities=21%  Similarity=0.259  Sum_probs=54.4

Q ss_pred             eEEEeccCceEeeecCC-CCcHHHHHHHHHHHhCCCCCCeEEEec--------------Ceec-cCCccccccccCCCCE
Q 012714          155 IFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFA--------------GKQL-EDGRTLADYNIQKEST  218 (458)
Q Consensus       155 i~v~~~~g~~~~~~v~~-~~tV~~LK~~I~~~~gip~~~q~L~~~--------------g~~L-~d~~tL~~y~i~~~s~  218 (458)
                      |.+++.+| +..++|+. +.||.+||.+|++..+||.+.|.|..+              -..| +|..+|+++||.+||.
T Consensus         3 iRiRsrdG-~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCC-ceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            44565555 56778864 679999999999999999999999643              2234 4556799999999999


Q ss_pred             EEEEEEe
Q 012714          219 LHLVLRL  225 (458)
Q Consensus       219 i~l~~~~  225 (458)
                      +++....
T Consensus        82 vyL~y~~   88 (94)
T d1wf9a1          82 VYLAYEG   88 (94)
T ss_dssp             EECCCSS
T ss_pred             EEEEeee
Confidence            9887643

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=2.4e-05  Score=55.62  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=65.6

Q ss_pred             EEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEecCcccCCCCcccccccCCCCeEEEEE
Q 012714          231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  299 (458)
Q Consensus       231 I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~l~d~~tL~~y~I~~~~ti~l~~  299 (458)
                      |.|-..+|+..++.|.++.|+.++-+..|+++|+.++++.|.|.++.++-+.+++..|+.+|+.+.|+.
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            567788999999999999999999999999999999999999999999999999999999999999874

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.00017  Score=51.09  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             eEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEecCeeccCCccccccccCCCCEEEEEE
Q 012714          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (458)
Q Consensus       155 i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~s~i~l~~  223 (458)
                      |.|-+++|+..++.+.|++|+.++-+..++++|+.+++..|.|+++.++-+.++...|+.+|+.+.|+-
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            566778999999999999999999999999999999999999999999999999999999999998874

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0047  Score=44.84  Aligned_cols=69  Identities=20%  Similarity=0.380  Sum_probs=58.5

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeec---cCCccccccccCCCCEEEEE
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  222 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L---~d~~tL~~y~i~~~s~i~l~  222 (458)
                      ..|.|+.++|..+.-...+++|+++|.+.+... +.+.....|.  |..+.+   +.+.||.+.|+.+.++|.+-
T Consensus         6 ~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           6 SKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            467889999999999999999999999999874 7777888887  677777   45689999999998888654

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.009  Score=43.24  Aligned_cols=69  Identities=20%  Similarity=0.380  Sum_probs=57.2

Q ss_pred             eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCccc---CCCcchhhcccccccceeEE
Q 012714           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  146 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L---~d~~tL~~~~i~~~s~i~l~  146 (458)
                      .+|.||.++|+.+.-....++|+.+|.+-+... +.++....|+  |-.+.+   +++.||.+.|+.+.+++++-
T Consensus         6 ~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           6 SKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            468899999999999999999999999999874 6667777776  556666   34689999999988888764

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.01  Score=43.65  Aligned_cols=67  Identities=18%  Similarity=0.293  Sum_probs=54.9

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhc-CCCCCceEEEEc--CeecC-CCCCccccCCCCCCE
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFA--GKQLE-DGRTLADYNIQKEST  446 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~~~~~~q~Li~~--G~~L~-d~~tL~~~~i~~~~~  446 (458)
                      ...|.||.++|+.+.....++++|.++.+-+.... +.+.....|+..  -+.|. +++||.++|+.+..+
T Consensus        14 ~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s~v   84 (89)
T d1i42a_          14 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI   84 (89)
T ss_dssp             CEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCSEE
T ss_pred             cEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCceE
Confidence            35788999999999999999999999999998764 566677888775  56774 568999999986543

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.33  E-value=0.027  Score=41.29  Aligned_cols=66  Identities=20%  Similarity=0.341  Sum_probs=52.9

Q ss_pred             eeEEEEccCCceEEEeecCCCcHHHHHHhhhccc-CCCCCCeeEEec--CeecCC-CCCcccccccCCCeE
Q 012714          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFA--GKQLED-GRTLADYNIQKESTL  371 (458)
Q Consensus       305 ~~i~v~~~~g~~~~l~v~~~~ti~~lK~~I~~~~-~i~~~~q~L~~~--g~~L~~-~~~l~~y~I~~~~~l  371 (458)
                      ..|.|+..+|..+.....+++||++|...+.... +.......|+..  .+.|.| +.||.+.|+.+ +.|
T Consensus        15 t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~-s~v   84 (89)
T d1i42a_          15 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLN-AVI   84 (89)
T ss_dssp             EEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCC-SEE
T ss_pred             EEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcC-ceE
Confidence            4566788899999999999999999999998753 455556777765  478877 88999999985 444

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.036  Score=41.12  Aligned_cols=70  Identities=17%  Similarity=0.210  Sum_probs=55.3

Q ss_pred             CceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEEc--CeecC--CCCCccccCCCCCCEEEE
Q 012714          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--DGRTLADYNIQKESTLHL  449 (458)
Q Consensus       379 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~~--G~~L~--d~~tL~~~~i~~~~~i~~  449 (458)
                      +.++|.||.++|+.+.-...+++||.+|..-++.. +.......|+..  .+.+.  .++||.++|+.+..++++
T Consensus        15 ~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v   88 (96)
T d2cr5a1          15 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNV   88 (96)
T ss_dssp             SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEE
Confidence            34788999999999999999999999999998765 445566666654  35553  368999999998888855

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.89  E-value=0.056  Score=40.02  Aligned_cols=72  Identities=17%  Similarity=0.187  Sum_probs=55.6

Q ss_pred             CCeEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCcccC--CCcchhhcccccccceeEEE
Q 012714           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~--d~~tL~~~~i~~~s~i~l~~  147 (458)
                      +..+|.||..+|+.+.-....++||.+|..-+.... .....-.|+  |-.+.+.  .+.||.++|+.+.+++++-.
T Consensus        15 ~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~~-~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~   90 (96)
T d2cr5a1          15 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   90 (96)
T ss_dssp             SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHhc-cCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEec
Confidence            346788999999999999999999999999987653 444555666  3345553  46899999999888877643

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.028  Score=43.93  Aligned_cols=69  Identities=19%  Similarity=0.354  Sum_probs=56.7

Q ss_pred             eeeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEE--ecCeec---cCCccccccccCCCCEEEEE
Q 012714          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  222 (458)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~--~~g~~L---~d~~tL~~y~i~~~s~i~l~  222 (458)
                      .+|.|+.++|+.+.-.+..++||.+|.+.+... +.+.....|.  |--+.|   +.+.||.+.|+.+..+|+|-
T Consensus        44 ~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEE
Confidence            567888899999999999999999999999875 4566677777  666777   45789999999998888654

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.055  Score=42.18  Aligned_cols=70  Identities=19%  Similarity=0.336  Sum_probs=56.1

Q ss_pred             eEEEEEecCCcEEEEEEeCCCCHHHHHHHHhHHhCCCCCCeEEE--ecCccc---CCCcchhhcccccccceeEEE
Q 012714           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL  147 (458)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L---~d~~tL~~~~i~~~s~i~l~~  147 (458)
                      .+|.||.++|+.+...+..++||.+|.+.+... +.+...-.|+  |--+.|   +...||.+.|+.+.++|++-.
T Consensus        44 ~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee  118 (124)
T d1wj4a_          44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEe
Confidence            578899999999999999999999999999875 3455556666  445666   346899999999988887643

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.86  E-value=1  Score=31.98  Aligned_cols=66  Identities=11%  Similarity=0.248  Sum_probs=47.8

Q ss_pred             ceeEEEEcCC------C-cEEEEEecCCCcHHHHHHHHHhhcCC-----------CCCceEEEEcCeecCCCCCccccCC
Q 012714          380 GMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNI  441 (458)
Q Consensus       380 ~~~i~vk~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~~~-----------~~~~q~Li~~G~~L~d~~tL~~~~i  441 (458)
                      +|+|+|+...      | ....+++..+.||.+|.+.+.++++-           .....++..+|+...+     ++-+
T Consensus         1 smkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-----d~~L   75 (88)
T d1vjka_           1 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL   75 (88)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred             CeEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-----CcCc
Confidence            4888888763      4 46688999999999999999988641           1234556667777654     3458


Q ss_pred             CCCCEEEEE
Q 012714          442 QKESTLHLV  450 (458)
Q Consensus       442 ~~~~~i~~~  450 (458)
                      ++||.|-++
T Consensus        76 ~~gDevai~   84 (88)
T d1vjka_          76 KDGDVVGVF   84 (88)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEe
Confidence            899998653

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.18  E-value=1.4  Score=31.13  Aligned_cols=72  Identities=15%  Similarity=0.239  Sum_probs=55.1

Q ss_pred             ceeEEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCC-CCCceEEEEcCe-----ecCCCCCccccCCCCCCEEEEEEE
Q 012714          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFAGK-----QLEDGRTLADYNIQKESTLHLVLR  452 (458)
Q Consensus       380 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~-~~~~q~Li~~G~-----~L~d~~tL~~~~i~~~~~i~~~~~  452 (458)
                      .|++.|.+++++ +++.+++.++-.+|=.++....|+ +.+-.-|-|-++     =|+.++.|..+..+.+....+..+
T Consensus         1 t~~v~V~~LD~~-~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l~F~   78 (84)
T d1ef1a3           1 TISVRVTTMDAE-LEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR   78 (84)
T ss_dssp             CEEEEEEETTEE-EEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred             CEEEEEEEcCCE-EEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEEEEE
Confidence            378899999974 899999999999999999999997 445556776532     267788898886666655444443

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=2  Score=30.35  Aligned_cols=71  Identities=15%  Similarity=0.275  Sum_probs=55.2

Q ss_pred             eEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCc-eEEEecCcc-----cCCCCcccccccCCCCeEEEEEe
Q 012714          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQ-----LEDGRTLADYNIQKESTLHLVLR  300 (458)
Q Consensus       229 ~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~-q~L~~~g~~-----l~d~~tL~~y~I~~~~ti~l~~~  300 (458)
                      +++.|...++ ++.++++...+..+|=.++++..+|.... +=|.|.+..     |+.++.+..+..+.+....+.++
T Consensus         2 ~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l~F~   78 (84)
T d1ef1a3           2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR   78 (84)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred             EEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEEEEE
Confidence            5677888887 58999999999999999999999988666 457774332     77889999887777766555443

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.57  E-value=4.1  Score=28.58  Aligned_cols=71  Identities=13%  Similarity=0.146  Sum_probs=54.5

Q ss_pred             eEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCce-EEEecCc----ccCCCCcccccccCCCCeEEEEEe
Q 012714          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGK----QLEDGRTLADYNIQKESTLHLVLR  300 (458)
Q Consensus       229 ~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q-~L~~~g~----~l~d~~tL~~y~I~~~~ti~l~~~  300 (458)
                      +.+.|...++ +++++++...+-.+|=.++++..+|....+ =|.|.+.    =|+.++++..+.++.+..+.+.++
T Consensus         3 ~~v~V~lLD~-~le~~v~~~a~G~~L~d~Vc~~L~L~E~~YFGL~y~~~~~~~WLd~~k~l~kq~~~~~~~~~~~F~   78 (84)
T d1h4ra3           3 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL   78 (84)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred             EEEEEEEcCC-cEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEecCCceEEccCCCchhhhccCCCCCEEEEEE
Confidence            3566778887 489999999999999999999999877664 4666322    167788999988887777665543

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.01  E-value=2  Score=29.45  Aligned_cols=43  Identities=12%  Similarity=0.047  Sum_probs=38.6

Q ss_pred             EEEEcCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCCceEEEE
Q 012714          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  425 (458)
Q Consensus       383 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~q~Li~  425 (458)
                      +.|-.++|+.-.++|.|+.|+.++-.++.++.|+.++...++.
T Consensus         3 iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~   45 (73)
T d1wxma1           3 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR   45 (73)
T ss_dssp             EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            5678899999899999999999999999999999988877654

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.75  E-value=4.6  Score=28.23  Aligned_cols=66  Identities=11%  Similarity=0.235  Sum_probs=45.8

Q ss_pred             eeeEEEecc------C-ceEeeecCCCCcHHHHHHHHHHHhCC-----------CCCCeEEEecCeeccCCccccccccC
Q 012714          153 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQ  214 (458)
Q Consensus       153 ~~i~v~~~~------g-~~~~~~v~~~~tV~~LK~~I~~~~gi-----------p~~~q~L~~~g~~L~d~~tL~~y~i~  214 (458)
                      |+|.|+.+.      | ....++++...||.+|.+.+.++++-           .....++.-+|+..++     ++-++
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-----d~~L~   76 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK   76 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-----CcCcC
Confidence            677777653      4 46778999999999999999887531           1233455567666554     45688


Q ss_pred             CCCEEEEEE
Q 012714          215 KESTLHLVL  223 (458)
Q Consensus       215 ~~s~i~l~~  223 (458)
                      +|+.|-++.
T Consensus        77 ~gDevai~P   85 (88)
T d1vjka_          77 DGDVVGVFP   85 (88)
T ss_dssp             TTCEEEEES
T ss_pred             CCCEEEEeC
Confidence            899887663

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.33  E-value=0.86  Score=31.94  Aligned_cols=45  Identities=11%  Similarity=0.182  Sum_probs=38.1

Q ss_pred             eeEEEeccCceEeeecCCCCcHHHHHHHHHHHhCCCCCCeEEEec
Q 012714          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA  198 (458)
Q Consensus       154 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~I~~~~gip~~~q~L~~~  198 (458)
                      .-.|+..-.-++.+.+++....++|.++|+++...|++.-.|.|.
T Consensus         5 ~~~vkVh~~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_           5 AYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             CEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             CEEEEEEEEEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            334444444678899999999999999999999999999999996

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.37  E-value=1.6  Score=30.44  Aligned_cols=46  Identities=13%  Similarity=0.209  Sum_probs=39.9

Q ss_pred             eEEEEEccCCceEEEeecccchHHHHHHHHhhhcCCCCCceEEEec
Q 012714          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA  274 (458)
Q Consensus       229 ~~I~V~~~~g~~i~~~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~  274 (458)
                      |+-.|+..-.=|+.+.+.+....++|+++|.+++++|++.-.|.|.
T Consensus         4 ~~~~vkVh~~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_           4 MAYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             SCEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             CCEEEEEEEEEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            4445666556688999999999999999999999999999999995