Citrus Sinensis ID: 012738

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
MMIIVILFGGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCSAAAGPIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYLTTADILLGTVDRPKAAEPLYVALEGLYSSLSH
cEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHcccccEEEEEEEEEEEEEEEEcccEEEEEEcccccccccEEEEEccccEEEEEcEEEEEEEEEEccHHHHHHHHHccEEEEcccccEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEcEEEEEccHHHHcccccccccHHHHHcccccccccHHHHHHHHHHHHHcccc
cEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHEEEcccccccccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHcccccccHHHcccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccccccccHccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccEEEEEEEccEEEEEEccccEEEEEccccccccHHHHHEEccccccEEcEEEEEEEEEEccHHHHHHHHccccEEEcccEEEEEccccccHHHHHHHcccccEEEEEEEccccEEEEEEEccEEEEEEHHHHHHHcccccccHHHHHcccccccHHHHHHHHHHHHHHHHccc
MMIIVILFGgcqkakkpyptvsnstkedymypfplesddvidggydssddqctdilrnnmppevnlKNVLSGIFAIItgqnktpsdcmnqqesssnvsffgsgkngdtylhssvyipsappllepdgvryIAYKEVleaeppewlpdssttvcmqctapftaltrgrhhcrfcggvfcrictkgrcllpvrfrernpqrvcdacydrldplQGVLINTISNAVQVAKHDvvdwtctrgwlnlpvglSMEYEIYKASNTLRSYCQvaesnpersiplAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVArrsdgswsapsaILSVGlgwgaqigGELMDFIVVLHDSKAVKTFCSRLHFslgagcsaaagpiGRVLEADLragergsgmcytyscskgafvgVSLEGNIvatrmdtnlrfygdpylttadillgtvdrpkaaEPLYVALEGLYSSLSH
MMIIVIlfggcqkakkpyptvsnstkedymYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLlpvrfrernpqRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARrsdgswsapSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCSAAAGPIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYLTTADILLGTVDRPKAAEPLYVALEGLYSSLSH
MMIIVILFGGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCSAAAGPIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYLTTADILLGTVDRPKAAEPLYVALEGLYSSLSH
**IIVILFGGCQKAKKPY*********DYMYPFPLESDDVIDGGY*****QCTDILRNNMPPEVNLKNVLSGIFAIITG**************************GDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCSAAAGPIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYLTTADILLGTVDRPKAAEPLYVALEGLY*****
*MII*****************************************************************************************************************************************PEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCSAAAGPIGR************SGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYLTTADILLGTVDRPKAAEPLYVALEGLY*****
MMIIVILFGGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNK*************NVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCSAAAGPIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYLTTADILLGTVDRPKAAEPLYVALEGLYSSLSH
MMIIVILFGGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSD*******SSNVSFF*SGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCSAAAGPIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYLTTADILLGTVDRPKAAEPLYVALEGLYSSLSH
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMIIVILFGGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCSAAAGPIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYLTTADILLGTVDRPKAAEPLYVALEGLYSSLSH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query457 2.2.26 [Sep-21-2011]
Q9URW6 430 SH3 domain-containing pro yes no 0.452 0.481 0.450 9e-40
Q5RAQ2 342 SH3 domain-containing YSC yes no 0.457 0.611 0.422 1e-34
Q96HL8 342 SH3 domain-containing YSC no no 0.457 0.611 0.422 1e-34
Q3SZ01 341 SH3 domain-containing YSC yes no 0.457 0.612 0.408 2e-34
Q6DFH5 335 SH3 domain-containing YSC N/A no 0.459 0.626 0.399 4e-34
O08641 340 SH3 domain-containing YSC yes no 0.450 0.605 0.414 1e-33
B0BNA1 340 SH3 domain-containing YSC yes no 0.450 0.605 0.414 1e-33
P32793 468 Protein YSC84 OS=Saccharo yes no 0.457 0.446 0.440 2e-32
P43603 459 LAS seventeen-binding pro no no 0.457 0.455 0.426 1e-30
A7A261 459 LAS seventeen-binding pro N/A no 0.457 0.455 0.426 1e-30
>sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1 Back     alignment and function desciption
 Score =  165 bits (417), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 95/211 (45%), Positives = 131/211 (62%), Gaps = 4/211 (1%)

Query: 240 LNLPVGLSMEYEIYKASNTLRSYCQVAES-NPERSIPLAVLNGAKGLAILTVAKAGVLVS 298
           L+ P+  S++ E  KA   L S+    ++   +  IP +VL  AKGL I+TV KAG L S
Sbjct: 3   LHNPLPSSLKSECKKAGKILTSFVDPRQTLGAQEVIPPSVLTNAKGLVIMTVLKAGFLFS 62

Query: 299 YKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHF 358
            ++G+GL+VAR  DG+WSAPSA+++ G+G GAQIG EL DF+++L+   AV+TF      
Sbjct: 63  GRIGSGLIVARLDDGTWSAPSAVMTGGMGVGAQIGSELTDFVIILNSKAAVQTFARLGSI 122

Query: 359 SLGAGCSAAAGPIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLR 418
           +LG   S AAGP+GR  EA   A   G    ++YS +KG F GVSLEG+++  R D N  
Sbjct: 123 TLGGNLSIAAGPLGRNAEAGGGASVGGMAPMFSYSKTKGLFAGVSLEGSVLVERRDANRS 182

Query: 419 FY-GDPYLTTADILLGTVDRPKAAEPLYVAL 448
            Y GD  +T   +L G V +P AA+PLY  L
Sbjct: 183 LYRGD--ITAKRLLSGQVAQPAAADPLYRVL 211

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q5RAQ2|SH3Y1_PONAB SH3 domain-containing YSC84-like protein 1 OS=Pongo abelii GN=SH3YL1 PE=2 SV=1 Back     alignment and function description
>sp|Q96HL8|SH3Y1_HUMAN SH3 domain-containing YSC84-like protein 1 OS=Homo sapiens GN=SH3YL1 PE=1 SV=1 Back     alignment and function description
>sp|Q3SZ01|SH3Y1_BOVIN SH3 domain-containing YSC84-like protein 1 OS=Bos taurus GN=SH3YL1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DFH5|SH3Y1_XENLA SH3 domain-containing YSC84-like protein 1 OS=Xenopus laevis GN=sh3yl1 PE=2 SV=1 Back     alignment and function description
>sp|O08641|SH3Y1_MOUSE SH3 domain-containing YSC84-like protein 1 OS=Mus musculus GN=Sh3yl1 PE=1 SV=1 Back     alignment and function description
>sp|B0BNA1|SH3Y1_RAT SH3 domain-containing YSC84-like protein 1 OS=Rattus norvegicus GN=Sh3yl1 PE=2 SV=1 Back     alignment and function description
>sp|P32793|YSC84_YEAST Protein YSC84 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSC84 PE=1 SV=2 Back     alignment and function description
>sp|P43603|LSB3_YEAST LAS seventeen-binding protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSB3 PE=1 SV=3 Back     alignment and function description
>sp|A7A261|LSB3_YEAS7 LAS seventeen-binding protein 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=LSB3 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
255550307493 zinc ion binding protein, putative [Rici 0.949 0.880 0.848 0.0
225444597475 PREDICTED: uncharacterized protein LOC10 0.960 0.924 0.822 0.0
388520069481 unknown [Medicago truncatula] 0.934 0.887 0.819 0.0
356547982484 PREDICTED: uncharacterized protein LOC10 0.947 0.894 0.812 0.0
356565629484 PREDICTED: uncharacterized protein LOC10 0.947 0.894 0.807 0.0
449452618469 PREDICTED: uncharacterized protein LOC10 0.921 0.897 0.801 0.0
449518137469 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.921 0.897 0.801 0.0
312281885479 unnamed protein product [Thellungiella h 0.938 0.895 0.784 0.0
297815442476 zinc finger family protein [Arabidopsis 0.947 0.909 0.767 0.0
118488250456 unknown [Populus trichocarpa] 0.975 0.978 0.769 0.0
>gi|255550307|ref|XP_002516204.1| zinc ion binding protein, putative [Ricinus communis] gi|223544690|gb|EEF46206.1| zinc ion binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/435 (84%), Positives = 395/435 (90%), Gaps = 1/435 (0%)

Query: 22  SNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNN-MPPEVNLKNVLSGIFAIITGQ 80
           + + KEDY + +P ES+D +D GYDSS+D CT I  +N   PEVNLKNVLSGI AI+TG+
Sbjct: 57  TKAVKEDYSFQYPFESEDYLDDGYDSSEDTCTAIQSSNSRHPEVNLKNVLSGIVAILTGK 116

Query: 81  NKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAE 140
           NK PS  MNQQ   SNVSF GS KNGDTYLHSSVYIPSAPPLL+  G+ Y AYKEVLEAE
Sbjct: 117 NKVPSVSMNQQLPISNVSFLGSEKNGDTYLHSSVYIPSAPPLLDTVGINYNAYKEVLEAE 176

Query: 141 PPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRV 200
           PPEWLPDSSTTVCMQCT+PFTALTRGRHHCRFCGGVFCR CTKGRCLLPV+FRERNPQRV
Sbjct: 177 PPEWLPDSSTTVCMQCTSPFTALTRGRHHCRFCGGVFCRGCTKGRCLLPVKFRERNPQRV 236

Query: 201 CDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLR 260
           CD CYDRLDPLQ VLINTISNAVQVAKHDV+DWTCTRGWLNLPVGLSME+EIYKASNTLR
Sbjct: 237 CDTCYDRLDPLQAVLINTISNAVQVAKHDVMDWTCTRGWLNLPVGLSMEHEIYKASNTLR 296

Query: 261 SYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSA 320
           SYCQVA  NPE+SIPLAVL GAKGLAILTVAKAG LVSYK+GTGLVVARRSDGSWSAPSA
Sbjct: 297 SYCQVARLNPEKSIPLAVLKGAKGLAILTVAKAGALVSYKVGTGLVVARRSDGSWSAPSA 356

Query: 321 ILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCSAAAGPIGRVLEADLR 380
           I SVGLGWGAQIGGELMDFIVVLHD KAVKTFCSR+HFSLGAGCSAAAGP+GRVLEADLR
Sbjct: 357 IWSVGLGWGAQIGGELMDFIVVLHDMKAVKTFCSRMHFSLGAGCSAAAGPVGRVLEADLR 416

Query: 381 AGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYLTTADILLGTVDRPKA 440
           AG+RGSGMCYTYSCSKGAFVGVSLEGNIV TR+D NL+FYGDPYLTT DILLGTV+RPKA
Sbjct: 417 AGDRGSGMCYTYSCSKGAFVGVSLEGNIVTTRLDVNLKFYGDPYLTTNDILLGTVERPKA 476

Query: 441 AEPLYVALEGLYSSL 455
           A+PLY AL+GLYSSL
Sbjct: 477 AQPLYTALDGLYSSL 491

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444597|ref|XP_002274191.1| PREDICTED: uncharacterized protein LOC100242383 [Vitis vinifera] gi|297738504|emb|CBI27749.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388520069|gb|AFK48096.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356547982|ref|XP_003542383.1| PREDICTED: uncharacterized protein LOC100810604 [Glycine max] Back     alignment and taxonomy information
>gi|356565629|ref|XP_003551041.1| PREDICTED: uncharacterized protein LOC100780209 [Glycine max] Back     alignment and taxonomy information
>gi|449452618|ref|XP_004144056.1| PREDICTED: uncharacterized protein LOC101214492 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449518137|ref|XP_004166100.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101214492 [Cucumis sativus] Back     alignment and taxonomy information
>gi|312281885|dbj|BAJ33808.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|297815442|ref|XP_002875604.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297321442|gb|EFH51863.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|118488250|gb|ABK95944.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
TAIR|locus:2084716485 AT3G43230 [Arabidopsis thalian 0.967 0.911 0.742 1.2e-182
TAIR|locus:2019362510 AT1G29800 [Arabidopsis thalian 0.704 0.631 0.582 7.3e-105
ASPGD|ASPL0000012058 410 AN4168 [Emericella nidulans (t 0.439 0.490 0.477 1.7e-41
POMBASE|SPAPJ696.02 430 SPAPJ696.02 "actin cortical pa 0.470 0.5 0.438 4.2e-40
SGD|S000001058 468 YSC84 "Actin-binding protein" 0.457 0.446 0.440 2.1e-38
UNIPROTKB|F1NNR2294 SH3YL1 "Uncharacterized protei 0.448 0.697 0.435 3.4e-38
UNIPROTKB|Q96HL8 342 SH3YL1 "SH3 domain-containing 0.452 0.605 0.426 5.5e-38
SGD|S000002968 459 LSB3 "Protein containing a C-t 0.457 0.455 0.426 2.4e-37
MGI|MGI:1346118 340 Sh3yl1 "Sh3 domain YSC-like 1" 0.450 0.605 0.414 3.9e-37
RGD|1306440 340 Sh3yl1 "SH3 domain containing, 0.450 0.605 0.414 3.9e-37
TAIR|locus:2084716 AT3G43230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1772 (628.8 bits), Expect = 1.2e-182, P = 1.2e-182
 Identities = 334/450 (74%), Positives = 383/450 (85%)

Query:     9 GGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDI---LRNNMPPEVN 65
             GG +   K +   S  TK++  YP  ++S D +D GYDSS +  T     ++ N  PEVN
Sbjct:    39 GGYEDGPK-WSVQSIPTKKEVEYPI-IDSGDYVDDGYDSSGELSTTTTPPIQGNEKPEVN 96

Query:    66 LKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEP 125
             LKNVL+G+ AI+TG+NK P D   Q+  SSNVSF GSG NGDT++HSSVYIPSAPPLLEP
Sbjct:    97 LKNVLTGLIAIVTGRNKNPLD---QKNPSSNVSFLGSGTNGDTFVHSSVYIPSAPPLLEP 153

Query:   126 DGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185
              G+ Y  YKE+LEAEPPEWLPDS  + CMQC+ PFTA+T GRHHCRFCGG+FCR C+KGR
Sbjct:   154 SGINYSVYKELLEAEPPEWLPDSLASTCMQCSTPFTAITCGRHHCRFCGGIFCRNCSKGR 213

Query:   186 CLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVG 245
             CL+P RFRERNPQRVCD+CY+RLDPLQ VLIN+ISNAVQVAKHDVVDWTC+RGWLNLPVG
Sbjct:   214 CLMPSRFRERNPQRVCDSCYERLDPLQCVLINSISNAVQVAKHDVVDWTCSRGWLNLPVG 273

Query:   246 LSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGL 305
             LSME EIYKA+NTLR YCQVA  +PE+SIP AVL+ AKGLAI+TVAKAG L+SYKLGTGL
Sbjct:   274 LSMEDEIYKAANTLRGYCQVARLDPEKSIPHAVLSRAKGLAIITVAKAGALLSYKLGTGL 333

Query:   306 VVARRSDGSWSAPSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCS 365
             V++RR DGSWSAPSAILSVGLGWGAQIGGELMDFI+VLHD KAVKTFCSR+HFSLGAGCS
Sbjct:   334 VISRRPDGSWSAPSAILSVGLGWGAQIGGELMDFIIVLHDVKAVKTFCSRMHFSLGAGCS 393

Query:   366 AAAGPIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYL 425
             AAAGPIGRVLEADLRAG++GSG+CYTYS SKGAFVGVSLEGN+VATR D N++FYGDPYL
Sbjct:   394 AAAGPIGRVLEADLRAGDKGSGVCYTYSRSKGAFVGVSLEGNLVATRRDMNVKFYGDPYL 453

Query:   426 TTADILLGTVDRPKAAEPLYVALEGLYSSL 455
             +T+DILLG VD+PKAAEPLY AL  LY+ L
Sbjct:   454 STSDILLGMVDQPKAAEPLYTALRELYARL 483
GO:0005737 "cytoplasm" evidence=ISM
GO:0008270 "zinc ion binding" evidence=ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0007165 "signal transduction" evidence=ISS
GO:0035091 "phosphatidylinositol binding" evidence=ISS
GO:0006914 "autophagy" evidence=RCA
TAIR|locus:2019362 AT1G29800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000012058 AN4168 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAPJ696.02 SPAPJ696.02 "actin cortical patch component Lsb4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000001058 YSC84 "Actin-binding protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|F1NNR2 SH3YL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q96HL8 SH3YL1 "SH3 domain-containing YSC84-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
SGD|S000002968 LSB3 "Protein containing a C-terminal SH3 domain" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:1346118 Sh3yl1 "Sh3 domain YSC-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306440 Sh3yl1 "SH3 domain containing, Ysc84-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
cd11526201 cd11526, SYLF_FYVE, The SYLF domain (also called D 1e-109
cd11525199 cd11525, SYLF_SH3YL1_like, The SYLF domain (also c 4e-65
cd11524194 cd11524, SYLF, The SYLF domain (also called DUF500 4e-57
pfam04366125 pfam04366, DUF500, Family of unknown function (DUF 6e-45
COG2930227 COG2930, COG2930, Uncharacterized conserved protei 2e-41
pfam0136368 pfam01363, FYVE, FYVE zinc finger 6e-26
smart0006468 smart00064, FYVE, Protein present in Fab1, YOTB, V 2e-21
cd0006557 cd00065, FYVE, FYVE domain; Zinc-binding domain; t 1e-17
>gnl|CDD|211402 cd11526, SYLF_FYVE, The SYLF domain (also called DUF500), a novel lipid-binding module, of FYVE zinc finger domain containing proteins Back     alignment and domain information 
 Score =  321 bits (826), Expect = e-109
 Identities = 125/200 (62%), Positives = 149/200 (74%), Gaps = 1/200 (0%)

Query: 250 YEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVAR 309
            EI KA+NTL+++ +     P++SIP A+L GAKGLA LTVAKAG +VS K+GTGLVVAR
Sbjct: 1   GEIRKAANTLQNFFKGGNLEPDQSIPHALLRGAKGLAFLTVAKAGFIVSGKVGTGLVVAR 60

Query: 310 RSDGSWSAPSAILSVGLGWGAQIGGELMDFIVVLHDSKAVKTFCSRLHFSLGAGCSAAAG 369
             DGSWSAPSAI + GLGWGAQ+GGEL DF++VL    AVK FC R   SLGA  S A G
Sbjct: 61  LPDGSWSAPSAIGTAGLGWGAQVGGELTDFVIVLRTRSAVKAFCGRGQVSLGAELSVAVG 120

Query: 370 PIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLRFYGDPYLTTAD 429
           P+GR  EADLRAG+ G   CY+YS SKG F GVSLEG++VATR D N +FYG P  T  +
Sbjct: 121 PLGRAAEADLRAGDGGVAACYSYSHSKGLFAGVSLEGSVVATRKDVNHKFYGRPV-TPTE 179

Query: 430 ILLGTVDRPKAAEPLYVALE 449
           ILLG+V +P AAEPLY AL+
Sbjct: 180 ILLGSVPQPPAAEPLYDALD 199

This subfamily is composed of uncharacterized proteins from plants and stramenopiles containing a FYVE zinc finger domain followed by a SYLF domain (also called DUF500). The SYLF domain of the related protein, SH3YL1, binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity. Length = 201
>gnl|CDD|211401 cd11525, SYLF_SH3YL1_like, The SYLF domain (also called DUF500), a novel lipid-binding module, of SH3 domain containing Ysc84-like 1 (SH3YL1) and similar proteins Back     alignment and domain information
>gnl|CDD|211400 cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module Back     alignment and domain information
>gnl|CDD|218046 pfam04366, DUF500, Family of unknown function (DUF500) Back     alignment and domain information
>gnl|CDD|225482 COG2930, COG2930, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger Back     alignment and domain information
>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 457
KOG1843473 consensus Uncharacterized conserved protein [Funct 100.0
COG2930227 Uncharacterized conserved protein [Function unknow 100.0
PF04366126 DUF500: Family of unknown function (DUF500); Inter 100.0
KOG1843 473 consensus Uncharacterized conserved protein [Funct 99.98
PF0136369 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f 99.75
smart0006468 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 99.65
KOG1729288 consensus FYVE finger containing protein [General 99.57
PTZ00303 1374 phosphatidylinositol kinase; Provisional 99.55
KOG1818 634 consensus Membrane trafficking and cell signaling 99.51
KOG1819990 consensus FYVE finger-containing proteins [General 99.47
cd0006557 FYVE FYVE domain; Zinc-binding domain; targets pro 99.34
KOG1842505 consensus FYVE finger-containing protein [General 99.19
KOG1841 1287 consensus Smad anchor for receptor activation [Def 99.16
KOG1409404 consensus Uncharacterized conserved protein, conta 98.97
KOG4424623 consensus Predicted Rho/Rac guanine nucleotide exc 98.45
KOG1811 1141 consensus Predicted Zn2+-binding protein, contains 97.91
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 97.36
PF02318118 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 96.69
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 96.11
PF06577160 DUF1134: Protein of unknown function (DUF1134); In 95.99
KOG1729288 consensus FYVE finger containing protein [General 92.49
KOG1841 1287 consensus Smad anchor for receptor activation [Def 92.15
COG5400205 Uncharacterized protein conserved in bacteria [Fun 88.79
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 85.49
COG3874138 Uncharacterized conserved protein [Function unknow 83.25
TIGR00622112 ssl1 transcription factor ssl1. This family is bas 82.91
PRK00464154 nrdR transcriptional regulator NrdR; Validated 82.57
KOG0993542 consensus Rab5 GTPase effector Rabaptin-5 [Intrace 82.05
PF09538108 FYDLN_acid: Protein of unknown function (FYDLN_aci 81.03
>KOG1843 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-61  Score=481.73  Aligned_cols=414  Identities=36%  Similarity=0.472  Sum_probs=385.1

Q ss_pred             CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCcchHHHHHhhhhhhhcCCCCCCCCCCCCCcCcceeee
Q 012738           20 TVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSF   99 (457)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~   99 (457)
                      ++|++++   -|.|.+..+.++++||+++.++. |.+...+.+|.++|+|+.+|..++++.|+....   +.-++..+.|
T Consensus        51 ~i~~lke---gflfsgr~Gsgviv~~l~dGtws-apsa~~~~g~g~g~~Vgveltd~V~ilNs~~av---~~f~~~G~it  123 (473)
T KOG1843|consen   51 SIPVLKE---GFLFSGRAGSGVIVGYLKDGTWS-APSAIAEAGEGAGGMVGVELTDFVIILNSALAV---QSFARFGTIT  123 (473)
T ss_pred             Eeeeecc---cccccccccCceeeeecCCCCcC-cchhhhhccccchhhhHHHHHHHHHhhcchHhh---hhhhhcCeee
Confidence            5566553   36678888999999999998886 999999999999999999999999998877654   3556778888


Q ss_pred             cCCCCCCCccCCCCcCCCCCCCccccCCCchhhhhhhcccCCCCccCCCCCCcccccCccCCCCcccccccccCCceEeC
Q 012738          100 FGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCR  179 (457)
Q Consensus       100 ~g~~~~g~~~~~~~~~~~~~p~l~~~~g~~~~~~~~~l~~~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~  179 (457)
                      +|.+           +.++++||.+.   ++...+..++.++|.|.+++....|++|..+|+.++.||||||.|+.+||.
T Consensus       124 LGgn-----------~svsAgPLgr~---aea~a~asl~~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cr  189 (473)
T KOG1843|consen  124 LGGN-----------LSVSAGPLGRN---AEAAASASLGGEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCR  189 (473)
T ss_pred             ecCc-----------ceeccCccccc---chhhhhhhhcCcCccccccccccceeeeecccceeeecchhhhhhcCccch
Confidence            8755           56788898876   667788889999999999999999999999999999999999999999999


Q ss_pred             CCCCceeecCccCCCCCceeeccccccccccccchhhhccchhhhhccccccccccccccccCCcccchhhhhhhhhHHH
Q 012738          180 ICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTL  259 (457)
Q Consensus       180 ~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~q~~~~~~~s~~~~~~~~~~~~~~~~RgwLnlPv~~s~e~EI~kAa~tL  259 (457)
                      .|+..+.++|..+....++|||+.|+..|...|..+.+..+.+.|.++||..+|...++|.|.|.+.+|+.++++++++|
T Consensus       190 a~~ilsg~vp~p~a~d~l~RVldS~~~nl~~~q~~~~d~~~da~qy~d~d~~Di~~s~sstn~~~~~~~e~s~~rra~sl  269 (473)
T KOG1843|consen  190 AKSILSGLVPVPFAADPLQRVLDSCAFNLESVQGSLDDQYSDAAQYADHDYTDIPTSRSSTNFPSGRSMERSIYRRANSL  269 (473)
T ss_pred             hhhhhccCCCCCcccCCHHHHHhhHhhccCCCccccccccCcccccCcccccccccccccccCcccCcchHHHHHhhhhc
Confidence            99999999998899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-hhhccCCCCCCCchhhhccCcceEEEEEeeeeeeEEEeeceEEEEEecCCCccccceeEEEecccceeeeceeeee
Q 012738          260 RSY-CQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQIGGELMD  338 (457)
Q Consensus       260 ~~f-~~~~~~~p~~~ip~~~l~~AkGlai~~v~k~G~~~gg~~G~GvviaR~~~g~WS~P~~i~~~g~s~Glq~G~e~~d  338 (457)
                      +.+ ++.....+|.+| ...+.+||||+++++.+.|.+...+.|+|++++|+++|+||+|+.|...|.+||.|+|.|-.|
T Consensus       270 rg~r~~~~dddded~~-~a~~srakgLa~~t~~~~g~l~~yk~~s~~~~srR~~Gs~s~~s~~s~~glgWgaq~ggey~d  348 (473)
T KOG1843|consen  270 RGYRSRVDDDDDEDSI-DAGLSRAKGLAPITVARSGVLDTYKLGSSLVVSRRNDGSWSPRSAISRFGLGWGAQAGGEYSD  348 (473)
T ss_pred             ccceeecccCchhhhh-hhhhhhcccCCcccccccccccccccccccceecccCCCCCCcchhcccccccchhccccccc
Confidence            988 556667788889 889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCHHHHHHHhhcCceEEcceeeEEeccccccccccccccccCcccEEEEEcccceEEEEEEeeEEEEechhHhhh
Q 012738          339 FIVVLHDSKAVKTFCSRLHFSLGAGCSAAAGPIGRVLEADLRAGERGSGMCYTYSCSKGAFVGVSLEGNIVATRMDTNLR  418 (457)
Q Consensus       339 ~V~vl~t~~al~~f~~~~~~~lG~d~s~aaGp~G~~~~a~~~~~~~~~~~v~sYs~skGlfaGvSl~G~~i~~~~d~N~~  418 (457)
                      +|||+++.|+++.|.++.++.+|+..++++||.||..+++.+++..+.+.+++|+.+||+|+|.||+++....+.+.|-+
T Consensus       349 fiivlrd~ea~~tf~s~~h~~~Ga~~s~a~~~s~r~~esdi~a~S~~~~~~~~~s~skgaf~~~Sl~~n~a~a~ysfage  428 (473)
T KOG1843|consen  349 FIIVLRDYEAIQTFRSGTHRVRGAGLSAAVGPSGRAVESDIRAGSSGYSKCGTYSASKGAFVGCSLEPNIATALYSFAGE  428 (473)
T ss_pred             chhhcchhhhhhccccccccccccccccccCcCccchhhcccccCCcccccccccCCCCcccccccCcceeeeeehhccC
Confidence            99999999999999999999999999999999999999999988888889999999999999999999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCcchHHHHHHHHHHhhccC
Q 012738          419 FYGDPYLTTADILLGTVDRPKAAEPLYVALEGLYSSLS  456 (457)
Q Consensus       419 ~YG~~~v~~~dIL~g~v~~p~~a~~L~~~L~~~~~~~~  456 (457)
                      |||.......|||. -++.|.++.+||.++.+++++|-
T Consensus       429 ~~GDl~f~kgDii~-il~ks~s~~dwwtgr~~~~egif  465 (473)
T KOG1843|consen  429 QPGDLSFQKGDIIT-ILKKSDSANDWWTGRGNGYEGIF  465 (473)
T ss_pred             CCCCcccccCceEE-EecCCcchhhHHHhhcccccccc
Confidence            99988888999999 88999999999999999999874

>COG2930 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04366 DUF500: Family of unknown function (DUF500); InterPro: IPR007461 This entry corresponds to proteins having the Ysc84 actin binding domain (YAB) Back     alignment and domain information
>KOG1843 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>KOG1729 consensus FYVE finger containing protein [General function prediction only] Back     alignment and domain information
>PTZ00303 phosphatidylinositol kinase; Provisional Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only] Back     alignment and domain information
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information
>KOG1842 consensus FYVE finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only] Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG1729 consensus FYVE finger containing protein [General function prediction only] Back     alignment and domain information
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] Back     alignment and domain information
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3874 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00622 ssl1 transcription factor ssl1 Back     alignment and domain information
>PRK00464 nrdR transcriptional regulator NrdR; Validated Back     alignment and domain information
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
3t7l_A90 Crystal Structure Of The Fyve Domain Of Endofin (Zf 6e-12
1joc_A125 Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I 4e-10
1hyi_A65 Solution Structure Of The Eea1 Fyve Domain Complexe 3e-09
2yw8_A82 Crystal Structure Of Human Run And Fyve Domain-Cont 3e-09
2yqm_A89 Solution Structure Of The Fyve Domain In Zinc Finge 4e-09
1z2q_A84 High-Resolution Solution Structure Of The Lm5-1 Fyv 2e-07
1vfy_A73 Phosphatidylinositol-3-Phosphate Binding Fyve Domai 3e-07
3mpx_A434 Crystal Structure Of The Dh And Ph-1 Domains Of Hum 5e-07
3zyq_A226 Crystal Structure Of The Tandem Vhs And Fyve Domain 9e-07
1dvp_A220 Crystal Structure Of The Vhs And Fyve Tandem Domain 1e-06
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16) At 1.1a Resolution Length = 90 Back     alignment and structure 
Iteration: 1

 Score = 68.9 bits (167), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 136 VLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRER 195
           VL  + P W+PDS    CM C   FT  T+ RHHCR CG VFC +C   +C L    +E 
Sbjct: 6   VLGQKQPTWVPDSEAPNCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQYLEKE- 63
Query: 196 NPQRVCDACYDRLDPLQG 213
              RVC  CY+ +   Q 
Sbjct: 64  --ARVCVVCYETISKAQA 79
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125 Back     alignment and structure
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65 Back     alignment and structure
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82 Back     alignment and structure
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89 Back     alignment and structure
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve Domain From Leishmania Major Length = 84 Back     alignment and structure
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of Vps27p Protein From Saccharomyces Cerevisiae Length = 73 Back     alignment and structure
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5 Length = 434 Back     alignment and structure
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 Back     alignment and structure
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
1z2q_A84 LM5-1; membrane protein, FYVE domain, zinc-finger; 4e-30
3t7l_A90 Zinc finger FYVE domain-containing protein 16; str 1e-29
1vfy_A73 Phosphatidylinositol-3-phosphate binding FYVE doma 1e-28
1joc_A125 EEA1, early endosomal autoantigen 1; FYVE domain, 2e-28
2yw8_A82 RUN and FYVE domain-containing protein 1; structur 1e-27
1x4u_A84 Zinc finger, FYVE domain containing 27 isoform B; 2e-25
1wfk_A88 Zinc finger, FYVE domain containing 19; riken stru 4e-20
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 1e-18
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 5e-18
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 1e-17
1y02_A120 CARP2, FYVE-ring finger protein sakura; zinc-bindi 4e-12
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 1e-11
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 1e-06
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 1e-06
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84 Back     alignment and structure
 Score =  110 bits (278), Expect = 4e-30
 Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 139 AEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQ 198
                W  D     C  C   FT   R RHHCR CG V C  C++ R  +P       P+
Sbjct: 10  QSKGYWQEDEDAPACNGCGCVFTTTVR-RHHCRNCGYVLCGDCSRHRAAIP-MRGITEPE 67

Query: 199 RVCDACYDRL 208
           RVCDACY  L
Sbjct: 68  RVCDACYLAL 77
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90 Back     alignment and structure
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73 Back     alignment and structure
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125 Back     alignment and structure
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82 Back     alignment and structure
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153 Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
1z2q_A84 LM5-1; membrane protein, FYVE domain, zinc-finger; 99.81
1x4u_A84 Zinc finger, FYVE domain containing 27 isoform B; 99.81
2yw8_A82 RUN and FYVE domain-containing protein 1; structur 99.79
3t7l_A90 Zinc finger FYVE domain-containing protein 16; str 99.79
1vfy_A73 Phosphatidylinositol-3-phosphate binding FYVE doma 99.78
1joc_A125 EEA1, early endosomal autoantigen 1; FYVE domain, 99.76
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 99.68
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 99.68
1wfk_A88 Zinc finger, FYVE domain containing 19; riken stru 99.66
1y02_A120 CARP2, FYVE-ring finger protein sakura; zinc-bindi 99.59
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 99.58
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 97.78
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 95.95
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 95.36
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 94.81
2csz_A76 Synaptotagmin-like protein 4; exophilin 2, granuph 92.16
1wff_A85 Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc 91.85
1wfh_A64 Zinc finger (AN1-like) family protein; ZF-AN1 doma 90.38
1wfp_A74 Zinc finger (AN1-like) family protein; ZF-AN1 doma 89.35
1wfl_A74 Zinc finger protein 216; ZF-AN1 domain, zinc bindi 88.01
1wg2_A64 Zinc finger (AN1-like) family protein; riken struc 85.9
1z60_A59 TFIIH basal transcription factor complex P44 subun 82.38
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Back     alignment and structure
Probab=99.81  E-value=5.6e-21  Score=156.92  Aligned_cols=69  Identities=41%  Similarity=0.838  Sum_probs=61.8

Q ss_pred             CCCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738          140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP  210 (457)
Q Consensus       140 ~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~  210 (457)
                      ..+.|+||+++..|+.|+++|+ +++||||||+||+|||+.||+++..+|. ....+|+|||+.||..|+.
T Consensus        11 ~~~~W~pd~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~   79 (84)
T 1z2q_A           11 SKGYWQEDEDAPACNGCGCVFT-TTVRRHHCRNCGYVLCGDCSRHRAAIPM-RGITEPERVCDACYLALRS   79 (84)
T ss_dssp             CCSCCCCTTTCCBCTTTCCBCC-TTSCCEECTTTCCEECTGGGCCEEEETT-TTEEEEEECCHHHHHHHHT
T ss_pred             CCCccccCCCCCCCcCcCCccc-cchhcccccCCCcEEChHHhCCeEeccC-CCCCCCCEECHHHHHHHhh
Confidence            3689999999999999999999 6689999999999999999999998884 3346899999999998864
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Back     alignment and structure
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Back     alignment and structure
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Back     alignment and structure
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Back     alignment and structure
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Back     alignment and structure
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Back     alignment and structure
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 457
d1joca164 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) 1e-19
d1dvpa272 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me 4e-19
d1vfya_67 g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch 1e-17
d1wfka_88 g.50.1.1 (A:) Zinc finger FYVE domain containing p 8e-16
d1zbdb_124 g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat 4e-15
d1y02a251 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro 9e-13
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (198), Expect = 1e-19
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 144 WLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDA 203
           W  D+    CM C   F+ +T  RHHCR CG +FC  C+    L P     + P RVCDA
Sbjct: 2   WAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTP---SSKKPVRVCDA 57

Query: 204 CYDRL 208
           C++ L
Sbjct: 58  CFNDL 62
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 Back     information, alignment and structure
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67 Back     information, alignment and structure
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
d1joca164 Eea1 {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1dvpa272 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 99.74
d1vfya_67 vps27p protein {Baker's yeast (Saccharomyces cerev 99.7
d1wfka_88 Zinc finger FYVE domain containing protein 19 {Mou 99.63
d1y02a251 Rififylin (FYVE-RING finger protein Sakura) {Human 99.36
d1zbdb_124 Effector domain of rabphilin-3a {Rat (Rattus norve 98.92
d1wfla_74 Zinc finger A20 domain containing protein 2 {Mouse 90.88
d1wfha_64 Zinc finger A20 and AN1 domains containing protein 89.66
d1wffa_85 ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus 89.64
d1wfpa_74 Zinc finger A20 and AN1 domains containing protein 88.26
d1z60a159 TFIIH p44 subunit cysteine-rich domain {Human (Hom 85.21
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.9e-21  Score=147.20  Aligned_cols=63  Identities=43%  Similarity=1.056  Sum_probs=57.5

Q ss_pred             CccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738          143 EWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD  209 (457)
Q Consensus       143 ~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~  209 (457)
                      .|+||++++.|+.|+++|+ +++||||||+||++||+.|++++.++|.   ...|+|||+.||+.|+
T Consensus         1 rW~~d~~~~~C~~C~~~F~-~~~rrHHCR~CG~v~C~~Cs~~~~~~~~---~~~~~RVC~~C~~~l~   63 (64)
T d1joca1           1 KWAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDACFNDLQ   63 (64)
T ss_dssp             CCCCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEECCTT---CSSCEEECHHHHHHTT
T ss_pred             CCCCcccCCcCcCcCCccc-CCccccchhhhCCeecccccCCceecCC---CCCccEehHHHHHHhc
Confidence            5999999999999999999 5678999999999999999999988873   3589999999999875
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure