Citrus Sinensis ID: 012750

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
Protein Sequence
MTEAFIHSHSHSQKLIHSFIHILLFKSPISGFSSLLTCFESFRIIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA
Secondary Structure (PSIPRED)
ccHHHHcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHcccccEEEEEEEEEcccccEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccEEccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccccEEEccccccHHHHHHHHHHccccccccccccccccccccccccEEEcccccccccccccccccccEEEEcccccccHHHHHHHHHcccEEEcccccccccEEEHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHEEcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHcccccEEEEEEEEEEcccccEEEEEEEEEEEEcccccEEccEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHccHHHHHHHHHHHHHHcHHHcEcccEEccEcccccHHHHHHHHHHHHHHHcccHHHcccccHHHccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHccccEEEEEEEccEEEEccccccHHHHHHHHHHHcccccccccEEEcHHHHHcccccEEEEccccccEcHHHHccccccEEEccccccEcHHHHHHHHHcccEEEcHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mteafihshshSQKLIHSFIHILLfkspisgfssLLTCFESFRIIVMNALAATSRNFRNAARILGLDsklersllipfreikvectipkddgslvsyvgfrvqhdnargpmkggiryhpevdpdEVNALAQLMTWKTAvadipyggakggigcspkelsnsELERLTRVFTQKIHDligihtdipapdmgtnAQTMAWILDEYskfhghspavvtgkpidlggslgreaatgrGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDItgavknadgidIHKLLAhkdktgslkdfdggdsmepsellahecdvlipcalggvlkrenaaDVKAKFIIEaanhptdpeadeilskrgvtilpdiyansggvtVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMcqthncnlrmgAFTLGVNRVARATTLRGWEA
Flexible Loop (DISEMBL)
MTEAFIHSHSHSQKLIHSFIHILLFKSPISGFSSLLTCFESFRIIVMNALAATSRNFRNAARIlgldsklerslLIPFreikvectipkddgslVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEaanhptdpeadEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA
Low Complexity Region (SEG)
MTEAFIHSHSHSQKLIHSFIHILLFKSPISGFSSLLTCFESFRIIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA
Disordered region (IsUnstruct)
************QKLIHSFIHILLFKSPISGFSSLLTCFESFRIIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHK*******************LLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANH******DEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLR****
Disordered Region (DISOPRED)
**************LIHSFIHI******************SFRIIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA
Disordered Region (DISEMBL)
*************KLIHSFIHILLFKSPISGFSSLLTCFESFRIIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA
Disordered Region (DISPRO)
***AFIHSHSHSQKLIHSFIHILLFKSPISGFSSLLTCFESFRIIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLR*W**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTEAFIHSHSHSQKLIHSFIHILLFKSPISGFSSLLTCFESFRIIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	457	2.2.26 [Sep-21-2011]
Q38946	411	Glutamate dehydrogenase 2	yes	no	0.899	1.0	0.868	0.0
O04937	411	Glutamate dehydrogenase A	N/A	no	0.899	1.0	0.871	0.0
P52596	411	Glutamate dehydrogenase O	yes	no	0.899	1.0	0.866	0.0
Q43260	411	Glutamate dehydrogenase O	N/A	no	0.899	1.0	0.812	0.0
Q9LEC8	411	Glutamate dehydrogenase B	N/A	no	0.899	1.0	0.793	0.0
Q43314	411	Glutamate dehydrogenase 1	no	no	0.899	1.0	0.798	0.0
Q9S7A0	411	Probable glutamate dehydr	no	no	0.894	0.995	0.789	0.0
P93541	412	Glutamate dehydrogenase O	N/A	no	0.899	0.997	0.793	0.0
P96110	416	Glutamate dehydrogenase O	yes	no	0.873	0.959	0.488	1e-107
P39633	424	Catabolic NAD-specific gl	yes	no	0.892	0.962	0.429	1e-101

>sp|Q38946|DHE2_ARATH Glutamate dehydrogenase 2 OS=Arabidopsis thaliana GN=GDH2 PE=1 SV=1

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/411 (86%), Positives = 392/411 (95%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR+A+RILGLDSK+ERSL+IPFREIKVECTIPKDDG+LVSY+GFRVQHDN
Sbjct: 1   MNALAATNRNFRHASRILGLDSKIERSLMIPFREIKVECTIPKDDGTLVSYIGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSP++LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPRDLSLSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGIHTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVV+ATEALLAE+G++I+ LTFVIQGFGNVG+WAA+LIHE+GGKV+AVSDITG
Sbjct: 181 REAATGRGVVFATEALLAEYGKSIQGLTFVIQGFGNVGTWAAKLIHEKGGKVVAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           A++N +GIDI+ L+ HKD TGSL DF+GGD+M   ELL HECDVLIPCALGGVL +ENA 
Sbjct: 241 AIRNPEGIDINALIKHKDATGSLNDFNGGDAMNSDELLIHECDVLIPCALGGVLNKENAG 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           DVKAKFI+EAANHPTDP+ADEILSK+GV ILPDIYAN+GGVTVSYFEWVQNIQGFMWEE+
Sbjct: 301 DVKAKFIVEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMWEEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVN EL++YM RAFHNIK MC TH+CNLRMGAFTLGVNRVARAT LRGWEA
Sbjct: 361 KVNLELQKYMTRAFHNIKTMCHTHSCNLRMGAFTLGVNRVARATQLRGWEA 411

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 4EC: .EC: 1EC: .EC: 3

>sp|O04937|DHEA_NICPL Glutamate dehydrogenase A OS=Nicotiana plumbaginifolia GN=GDHA PE=2 SV=1

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/411 (87%), Positives = 385/411 (93%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR AARILGLDSKLE+SLLIPFREIKVECTIPKDDG+LVSYVGFRVQHDN
Sbjct: 1   MNALAATNRNFRQAARILGLDSKLEKSLLIPFREIKVECTIPKDDGTLVSYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVD DEVNALAQLMTWKTAVADIPYGGAKGGIGC PK+LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDLDEVNALAQLMTWKTAVADIPYGGAKGGIGCKPKDLSKSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGI+TD+PAPDMGTNAQTMAWILDEYSKFHGHSPA+VTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAIVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVVYATEALLAE+G+ I+DLTF IQGFGNVG+WAA+LIHERGGKVIAVSDITG
Sbjct: 181 REAATGRGVVYATEALLAEYGKNIKDLTFAIQGFGNVGAWAAKLIHERGGKVIAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AVKN +G+DI  LL HK+ TG L DF GGD M   E+L HECDVLIPCALGGVL RENA 
Sbjct: 241 AVKNPNGLDIPALLNHKEATGKLIDFSGGDVMNSDEVLTHECDVLIPCALGGVLNRENAD 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           +VKAKFIIEAANHPTDPEADEIL K+G+ ILPDIYAN+GGVTVSYFEWVQNIQGFMW+E+
Sbjct: 301 NVKAKFIIEAANHPTDPEADEILCKKGIVILPDIYANAGGVTVSYFEWVQNIQGFMWDEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVN ELR+YM +AFHN+K MCQ+HNC+LRMGAFTLGVNRVARATTLRGWEA
Sbjct: 361 KVNRELRKYMTKAFHNLKNMCQSHNCSLRMGAFTLGVNRVARATTLRGWEA 411

Nicotiana plumbaginifolia (taxid: 4092)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|P52596|DHE3_VITVI Glutamate dehydrogenase OS=Vitis vinifera GN=GDH PE=2 SV=1

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/411 (86%), Positives = 387/411 (94%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR+A+RILGLDSKLE+SLLIPFREIKVECTIPKDDGSL +YVGFRVQHDN
Sbjct: 1   MNALAATNRNFRHASRILGLDSKLEKSLLIPFREIKVECTIPKDDGSLATYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAV DIPYGGAKGGIGC+PK+LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVVDIPYGGAKGGIGCTPKDLSMSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIG HTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI LGGSLG
Sbjct: 121 TRVFTQKIHDLIGTHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIALGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVV+ATEALLA+HG++I+ LTFVIQGFGNVGSW ARLI ERGGK+IAVSD+TG
Sbjct: 181 REAATGRGVVFATEALLAQHGKSIKGLTFVIQGFGNVGSWVARLIGERGGKIIAVSDVTG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AVKN +G+DI  LL HK++TG L +F GGD M+P+ELL HECDVLIPCALGGVL +ENAA
Sbjct: 241 AVKNQNGLDIVDLLRHKEETGCLTNFSGGDHMDPNELLTHECDVLIPCALGGVLNKENAA 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           DVKAKFIIEAANHPTDPEADEILSK+G  ILPDIYAN+GGVTVSYFEWVQNIQGFMWEE+
Sbjct: 301 DVKAKFIIEAANHPTDPEADEILSKKGGVILPDIYANAGGVTVSYFEWVQNIQGFMWEEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVNNEL++YM +AFHNIK MCQ+HNC+LRMGAFTL VNRVA ATTLRGWEA
Sbjct: 361 KVNNELQKYMTKAFHNIKAMCQSHNCSLRMGAFTLAVNRVACATTLRGWEA 411

Vitis vinifera (taxid: 29760)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q43260|DHE3_MAIZE Glutamate dehydrogenase OS=Zea mays GN=GDH1 PE=1 SV=1

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/411 (81%), Positives = 373/411 (90%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAATSRNF+ AA++LGLDSKLE+SLLIPFREIKVECTIPKDDG+L SYVGFRVQHDN
Sbjct: 1   MNALAATSRNFKQAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYH EVDPDEVNALAQLMTWKTAVA+IPYGGAKGGIGCSP +LS SELERL
Sbjct: 61  ARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSISELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGIHTD+PAPDMGTN+QTMAWILDEYSKFHG+SPAVVTGKP+DLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPVDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           R+AATGRGV++ATEALLAEHG+ I    FVIQGFGNVGSWAA+LI E GGKVIA+SD+TG
Sbjct: 181 RDAATGRGVLFATEALLAEHGKGIAGQRFVIQGFGNVGSWAAQLISEAGGKVIAISDVTG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AVKN DG+DI +L+ H  +   +K F GGD++ P  LL  ECDVLIP ALGGV+ ++NA 
Sbjct: 241 AVKNVDGLDIAQLVKHSAENKGIKGFKGGDAIAPDSLLTEECDVLIPAALGGVINKDNAN 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           D+KAK+IIEAANHPTDPEADEILSK+GV ILPDI ANSGGVTVSYFEWVQNIQGFMW+E+
Sbjct: 301 DIKAKYIIEAANHPTDPEADEILSKKGVLILPDILANSGGVTVSYFEWVQNIQGFMWDEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVN ELR Y+ RAF N+K MC++H+C+LRMGAFTLGVNRVARAT LRGWEA
Sbjct: 361 KVNAELRTYITRAFGNVKQMCRSHSCDLRMGAFTLGVNRVARATVLRGWEA 411

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9LEC8|DHEB_NICPL Glutamate dehydrogenase B OS=Nicotiana plumbaginifolia GN=GDHB PE=2 SV=1

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/411 (79%), Positives = 373/411 (90%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNF+ A+R+LGLDSKLE+ LLIPFREIKVECTIPKDDGSL +++GFRVQHDN
Sbjct: 1   MNALAATNRNFKLASRLLGLDSKLEQCLLIPFREIKVECTIPKDDGSLATFIGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA+IPYGGAKGGIGCSP +LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPSDLSISELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIG+HTD+PAPDMGTN QTMAWILDEYSKFHG+SPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGVHTDVPAPDMGTNPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           R+AATGRGV++A EALL +HG++I    FV+QGFGNVGSWAA+LI E+GGK++AVSDITG
Sbjct: 181 RDAATGRGVLFAAEALLRDHGKSIAGQRFVVQGFGNVGSWAAQLITEQGGKIVAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           A+KN +GIDI  LL H  +   +K F G DS++P+ +L  +CDVLIP ALGGV+ R+NA 
Sbjct: 241 AIKNKNGIDIASLLKHVKENRGVKGFHGADSIDPNSILVEDCDVLIPAALGGVINRDNAK 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           D+KAKFI+EAANHPTDPEADEIL+K+GV ILPDIYANSGGVTVSYFEWVQNIQGFMW+E+
Sbjct: 301 DIKAKFIVEAANHPTDPEADEILAKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWDEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           +VN EL+ YM R F ++K MC+THNC+LRMGAFTLGVNRVARATTLRGWEA
Sbjct: 361 RVNTELKAYMNRGFKDVKDMCKTHNCDLRMGAFTLGVNRVARATTLRGWEA 411

Nicotiana plumbaginifolia (taxid: 4092)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1 OS=Arabidopsis thaliana GN=GDH1 PE=1 SV=1

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/411 (79%), Positives = 370/411 (90%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNF+ AAR+LGLDSKLE+SLLIPFREIKVECTIPKDDG+L S+VGFRVQHDN
Sbjct: 1   MNALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC P +LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSKLSISELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGIHTD+PAPDMGT  QTMAWILDEYSKFHG+SPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           R+AATGRGV++ TEALL EHG+ I    FVIQGFGNVGSWAA+LI E+GGK++AVSDITG
Sbjct: 181 RDAATGRGVMFGTEALLNEHGKTISGQRFVIQGFGNVGSWAAKLISEKGGKIVAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           A+KN DGIDI  LL H  +   +K FDG D ++P+ +L  +CD+L+P ALGGV+ RENA 
Sbjct: 241 AIKNKDGIDIPALLKHTKEHRGVKGFDGADPIDPNSILVEDCDILVPAALGGVINRENAN 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           ++KAKFIIEAANHPTDP+ADEILSK+GV ILPDIYANSGGVTVSYFEWVQNIQGFMWEE+
Sbjct: 301 EIKAKFIIEAANHPTDPDADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVN+EL+ YM R+F ++K MC+TH+C+LRMGAFTLGVNRVA+AT LRGW A
Sbjct: 361 KVNDELKTYMTRSFKDLKEMCKTHSCDLRMGAFTLGVNRVAQATILRGWGA 411

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9S7A0|DHE3_ARATH Probable glutamate dehydrogenase 3 OS=Arabidopsis thaliana GN=GSH3 PE=1 SV=1

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/409 (78%), Positives = 367/409 (89%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNF+ A+R+LGLDSKLE+SLLIPFREIKVECTIPKDDG+L S+VGFRVQHDN
Sbjct: 1   MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEV+PDEVNALAQLMTWKTAVA IPYGGAKGGIGC P ELS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSELSLSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGIHTD+PAPDMGT  QTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           R+AATGRGV++ATEALL EHG+ I    F IQGFGNVGSWAA+LI ++GGK++AVSD+TG
Sbjct: 181 RDAATGRGVLFATEALLNEHGKTISGQRFAIQGFGNVGSWAAKLISDKGGKIVAVSDVTG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           A+KN +GIDI  LL H ++   +K FDG DS++P  +L  +CD+L+P ALGGV+ RENA 
Sbjct: 241 AIKNNNGIDILSLLEHAEENRGIKGFDGADSIDPDSILVEDCDILVPAALGGVINRENAN 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           ++KAKFIIE ANHPTDPEADEIL K+GV ILPDIYANSGGVTVSYFEWVQNIQGFMW+E+
Sbjct: 301 EIKAKFIIEGANHPTDPEADEILKKKGVMILPDIYANSGGVTVSYFEWVQNIQGFMWDEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           KVN EL+ YM R F ++K MCQTH+C+LRMGAFTLG+NRVA+ATT+RGW
Sbjct: 361 KVNRELKTYMTRGFKDLKEMCQTHSCDLRMGAFTLGINRVAQATTIRGW 409

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|P93541|DHE3_SOLLC Glutamate dehydrogenase OS=Solanum lycopersicum GN=GDH1 PE=2 SV=1

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/412 (79%), Positives = 367/412 (89%), Gaps = 1/412 (0%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNF+ AAR+LGLDSKLE SLLIPFREIKVECTIPKDDG+L S+VGFRVQHDN
Sbjct: 1   MNALAATNRNFKLAARLLGLDSKLELSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA+IPYGGAKGGIGCSP +LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPSDLSISELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGIHTD+PAPDMGTN QTMAWILDEYSKFHG+SPAVVTGKP+DLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNPQTMAWILDEYSKFHGYSPAVVTGKPVDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           R+AATGRG ++ATEALL EHG+++    FVIQGFGNVGSWAA+LIHE+GGKV+AVSDITG
Sbjct: 181 RDAATGRGALFATEALLNEHGKSVAGQRFVIQGFGNVGSWAAKLIHEQGGKVVAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKREN-A 345
           A+KN  GIDI  L  H  +T  +K F     ++ + +L  +CDVLIP ALGGV+ ++N  
Sbjct: 241 AIKNEKGIDIESLFKHVKETRGVKGFHDAHPIDANSILVEDCDVLIPAALGGVINKDNHK 300

Query: 346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
             +KAK+IIEAANHPTDPEADEILSK+GVTILPDIYANSGGVTVSYFEWVQNIQGFMW+E
Sbjct: 301 LKIKAKYIIEAANHPTDPEADEILSKKGVTILPDIYANSGGVTVSYFEWVQNIQGFMWDE 360

Query: 406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
            KVN+EL+ YM R F ++K MC+THNC+LRMGAFTLGVNRVARAT LRGWEA
Sbjct: 361 KKVNDELKTYMTRGFKDVKDMCKTHNCDLRMGAFTLGVNRVARATVLRGWEA 412

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|P96110|DHE3_THEMA Glutamate dehydrogenase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=gdhA PE=1 SV=4

 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/401 (48%), Positives = 267/401 (66%), Gaps = 2/401 (0%)

Query: 56  NFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGI 115
            F  AA ++ L+S L   L  P R + VE  +  DDG +  + G+RVQH+ ARGP KGGI
Sbjct: 13  QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 72

Query: 116 RYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIH 175
           RYHP+V  DEV ALA  MTWKTAV ++P+GG KGG+   PK+LS +ELERL+R F  +I 
Sbjct: 73  RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 132

Query: 176 DLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRG 234
            +IG + DIPAPD+ TNA  MAW +D YS   GH+   +VTGKP++LGGS GRE ATGRG
Sbjct: 133 VIIGPYNDIPAPDVNTNADVMAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRG 192

Query: 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIAVSDITGAVKNADG 293
           V       +   G   +  T  +QGFGNVG +AA LI  E G KV+AVSD  G + N +G
Sbjct: 193 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 252

Query: 294 IDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFI 353
            D+ +L+ +K + G++  +  G+ +   ELL  + D+L+P AL G +   NA  +KAK +
Sbjct: 253 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV 312

Query: 354 IEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELR 413
           +E AN PT PEADEILS+RG+ ++PDI AN+GGVTVSYFEWVQ++Q F W+ D+V N L 
Sbjct: 313 VEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALE 372

Query: 414 RYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
           + M  AF+++  + + +N ++R  A+ L ++RVA AT  RG
Sbjct: 373 KMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 413

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|P39633|DHE2_BACSU Catabolic NAD-specific glutamate dehydrogenase RocG OS=Bacillus subtilis (strain 168) GN=rocG PE=1 SV=3

 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/410 (42%), Positives = 261/410 (63%), Gaps = 2/410 (0%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           +N   +T    + A R LG    +   +  P R + V   +  D+GS+  + G+R QH++
Sbjct: 15  LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND 74

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           A GP KGG+R+HPEV+ +EV AL+  MT K  +A++PYGG KGGI C P+ +S  ELERL
Sbjct: 75  AVGPTKGGVRFHPEVNEEEVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERL 134

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSL 225
           +R + + I  ++G   DIPAPD+ TN+Q MAW++DEYS+     SP  +TGKP+ LGGS 
Sbjct: 135 SRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQ 194

Query: 226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285
           GRE AT +GV    E  + + G  +++   +IQGFGN GS+ A+ +H+ G KVI +SD  
Sbjct: 195 GRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN 254

Query: 286 GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
           G + N DG+DI  LL  +D  G + +    D +   ELL  +CD+L+P A+   +  +NA
Sbjct: 255 GGLYNPDGLDIPYLLDKRDSFGMVTNL-FTDVITNEELLEKDCDILVPAAISNQITAKNA 313

Query: 346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
            +++A  ++EAAN PT  +A +IL++RGV ++PDI A++GGVTVSYFEWVQN QG+ W E
Sbjct: 314 HNIQASIVVEAANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQNNQGYYWSE 373

Query: 406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           ++V  +LR  M+ +F  I     TH  ++R+ A+  G+ + A A+  RGW
Sbjct: 374 EEVAEKLRSVMVSSFETIYQTAATHKVDMRLAAYMTGIRKSAEASRFRGW 423

Catabolic GlutDH involved in the utilization of glutamate and other amino acids of the glutamate family.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
224114668	411	predicted protein [Populus trichocarpa]	0.899	1.0	0.878	0.0
449458315	411	PREDICTED: glutamate dehydrogenase 2-lik	0.899	1.0	0.875	0.0
255539945	411	glutamate dehydrogenase, putative [Ricin	0.899	1.0	0.883	0.0
149938958	411	GDH2 [Actinidia chinensis]	0.899	1.0	0.878	0.0
449451836	411	PREDICTED: glutamate dehydrogenase 2-lik	0.899	1.0	0.875	0.0
15240793	411	glutamate dehydrogenase 2 [Arabidopsis t	0.899	1.0	0.868	0.0
224134280	411	predicted protein [Populus trichocarpa]	0.899	1.0	0.868	0.0
272725401	411	GDH2 [Camellia sinensis]	0.899	1.0	0.873	0.0
15004984	411	glutamate dehydrogenase [Brassica napus]	0.899	1.0	0.866	0.0
225454888	411	PREDICTED: glutamate dehydrogenase [Viti	0.899	1.0	0.868	0.0

>gi|224114668|ref|XP_002339508.1| predicted protein [Populus trichocarpa] gi|222832584|gb|EEE71061.1| predicted protein [Populus trichocarpa]

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/411 (87%), Positives = 392/411 (95%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAATSRNFR+A+R+LGLDSK+E+SLLIPFREIKVECTIPKDDG+LVSYVGFRVQHDN
Sbjct: 1   MNALAATSRNFRHASRLLGLDSKVEKSLLIPFREIKVECTIPKDDGTLVSYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWK+AVADIPYGGAKGGIGC+P +LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVADIPYGGAKGGIGCNPGDLSKSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIG+HTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGVHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVV+ATEALLAEHG++I+DLTF IQGFGNVGSWAA+LIHERGGKVIAVSDITG
Sbjct: 181 REAATGRGVVFATEALLAEHGKSIKDLTFAIQGFGNVGSWAAKLIHERGGKVIAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AVKN +GIDI +LL HK+ TGSLKDF G +SM+ +ELL H+CDVLIPCALGGVL RENAA
Sbjct: 241 AVKNPNGIDIPELLRHKETTGSLKDFQGAESMDANELLIHKCDVLIPCALGGVLNRENAA 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           DVKAKFIIEAANHPTDPEADEIL+K+GV +LPDIYANSGGVTVSYFEWVQNIQGFMW+E 
Sbjct: 301 DVKAKFIIEAANHPTDPEADEILAKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWDEQ 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           +VNN L+ YM RAFHNIK MCQTH+CNLRMGAFTLGV+RVARAT LRGWEA
Sbjct: 361 QVNNTLQNYMTRAFHNIKSMCQTHDCNLRMGAFTLGVSRVARATLLRGWEA 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458315|ref|XP_004146893.1| PREDICTED: glutamate dehydrogenase 2-like [Cucumis sativus] gi|449528457|ref|XP_004171221.1| PREDICTED: glutamate dehydrogenase 2-like [Cucumis sativus]

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/411 (87%), Positives = 388/411 (94%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNAL AT+RNFR+AARILGLDSKLE+SLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN
Sbjct: 1   MNALQATNRNFRHAARILGLDSKLEKSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGC+P+ELSNSELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRELSNSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGIHTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVV+ATEALLAEHG+ I+++TF IQGFGNVG WA++LIHE+GGKV+AVSDITG
Sbjct: 181 REAATGRGVVFATEALLAEHGKQIKNMTFAIQGFGNVGYWASKLIHEKGGKVVAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AV N +GIDI +L  HK+ TGSL +F G D M+P+ELL H+CDVLIPCALGGVL RENA 
Sbjct: 241 AVTNPNGIDIQELYKHKESTGSLVNFQGADDMDPNELLVHDCDVLIPCALGGVLNRENAG 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
            VKAKFIIEAANHPTDPEADEILSK+GV ILPDIYAN+GGVTVSYFEWVQNIQGFMW+ED
Sbjct: 301 SVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANAGGVTVSYFEWVQNIQGFMWDED 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVN EL+RYM RAFHNIK MC+TH+CNLRMGAFTLGVNRVARAT LRGWEA
Sbjct: 361 KVNTELQRYMTRAFHNIKNMCKTHDCNLRMGAFTLGVNRVARATLLRGWEA 411

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539945|ref|XP_002511037.1| glutamate dehydrogenase, putative [Ricinus communis] gi|223550152|gb|EEF51639.1| glutamate dehydrogenase, putative [Ricinus communis]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/411 (88%), Positives = 390/411 (94%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR+AARILGLDSK+ERSL+IPFREIKVECTIPKDDG+LVSYVGFRVQHDN
Sbjct: 1   MNALAATNRNFRHAARILGLDSKVERSLMIPFREIKVECTIPKDDGTLVSYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIR+HPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGC+P++LS SELERL
Sbjct: 61  ARGPMKGGIRFHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRDLSRSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGIHTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKP+DLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPLDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVV+ATEALLAE+G+ I  LTFVIQGFGNVGSWAARLIHERGGKVIAVSD+TG
Sbjct: 181 REAATGRGVVFATEALLAEYGKFIEGLTFVIQGFGNVGSWAARLIHERGGKVIAVSDVTG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AVKN  GIDI +LL HKD T SL +F GGD M+P+ELL HECDVLIPCALGGVL RENAA
Sbjct: 241 AVKNPKGIDIPELLRHKDSTNSLTNFHGGDPMDPNELLVHECDVLIPCALGGVLNRENAA 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           DVKAKFI+EAANHPTDPEADEILSK+GV ILPDIYAN+GGVTVSYFEWVQNIQGFMWEE+
Sbjct: 301 DVKAKFIVEAANHPTDPEADEILSKKGVVILPDIYANAGGVTVSYFEWVQNIQGFMWEEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           +VN EL+RYM RAF NIK MC+TH+CNLRMGAFTLGVNRVARAT LRGWEA
Sbjct: 361 QVNKELQRYMTRAFQNIKNMCKTHDCNLRMGAFTLGVNRVARATLLRGWEA 411

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149938958|gb|ABR45724.1| GDH2 [Actinidia chinensis]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/411 (87%), Positives = 390/411 (94%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR+AARILGLDSKLE+SLLIPFREIKVECTIPKDDG+LVSYVGFRVQHDN
Sbjct: 1   MNALAATNRNFRHAARILGLDSKLEKSLLIPFREIKVECTIPKDDGTLVSYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           +RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGC+PK+LS SE ERL
Sbjct: 61  SRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCTPKDLSKSEWERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIG++ D+PAPDMGTNAQTMAWILDEYSKFHG+SPA+VTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGVNMDVPAPDMGTNAQTMAWILDEYSKFHGYSPAIVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVVYATEALLAEHG++I+DLTFVIQGFGNVGSWAARLIHERGGKV+AVSDITG
Sbjct: 181 REAATGRGVVYATEALLAEHGKSIKDLTFVIQGFGNVGSWAARLIHERGGKVVAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AVKN +GIDI  LL HK+ TGSL +FDGGD+M+P+ELL  +CDVLIPCALGGVL RENA 
Sbjct: 241 AVKNPNGIDIQSLLNHKEATGSLNNFDGGDAMDPNELLIEDCDVLIPCALGGVLNRENAG 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
            V+AKFIIEAANHPTDPEADEILSK+GV +LPDIYANSGGVTVSYFEWVQNIQGFMW+E+
Sbjct: 301 KVRAKFIIEAANHPTDPEADEILSKKGVIVLPDIYANSGGVTVSYFEWVQNIQGFMWDEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVN EL RYM RAF NIK MCQTHNC+LRMGAFTLGVNRVARAT LRGWEA
Sbjct: 361 KVNKELHRYMTRAFGNIKNMCQTHNCSLRMGAFTLGVNRVARATVLRGWEA 411

Source: Actinidia chinensis

Species: Actinidia chinensis

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451836|ref|XP_004143666.1| PREDICTED: glutamate dehydrogenase 2-like [Cucumis sativus] gi|449488611|ref|XP_004158111.1| PREDICTED: LOW QUALITY PROTEIN: glutamate dehydrogenase 2-like [Cucumis sativus]

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/411 (87%), Positives = 391/411 (95%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR+AARILGLDSK+E+SLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN
Sbjct: 1   MNALAATNRNFRHAARILGLDSKIEKSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGC+P+ELS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCTPRELSMSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKP+DLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPLDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           R+AATGRGVV+ATEALLAEHG  I+DLTFVIQGFGNVGSWAARLIHERGGKV+AVSDITG
Sbjct: 181 RDAATGRGVVFATEALLAEHGMKIKDLTFVIQGFGNVGSWAARLIHERGGKVVAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AV N +GID+ +L+ HK+KT SL +F G D M+P+ELL HECDVLIPCALGGVL RENAA
Sbjct: 241 AVTNPNGIDVPELIIHKEKTNSLVNFQGADGMDPNELLVHECDVLIPCALGGVLNRENAA 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
            V+AKFI+EAANHPTDPEADEILSK+GV ILPDIYAN+GGVTVSYFEWVQNIQGFMW+E+
Sbjct: 301 GVRAKFIVEAANHPTDPEADEILSKKGVLILPDIYANAGGVTVSYFEWVQNIQGFMWDEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVN EL+RYM RAF+NIK MC++H+C+LRMGAFTLGVNRVARAT LRGWEA
Sbjct: 361 KVNKELQRYMTRAFYNIKSMCKSHDCSLRMGAFTLGVNRVARATLLRGWEA 411

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240793|ref|NP_196361.1| glutamate dehydrogenase 2 [Arabidopsis thaliana] gi|186521018|ref|NP_001119183.1| glutamate dehydrogenase 2 [Arabidopsis thaliana] gi|297806777|ref|XP_002871272.1| hypothetical protein ARALYDRAFT_487575 [Arabidopsis lyrata subsp. lyrata] gi|12229806|sp|Q38946.1|DHE2_ARATH RecName: Full=Glutamate dehydrogenase 2; Short=GDH 2 gi|1336084|gb|AAB01222.1| glutamate dehydrogenase 2 [Arabidopsis thaliana] gi|7576182|emb|CAB87933.1| glutamate dehydrogenase 2 [Arabidopsis thaliana] gi|297317109|gb|EFH47531.1| hypothetical protein ARALYDRAFT_487575 [Arabidopsis lyrata subsp. lyrata] gi|332003774|gb|AED91157.1| glutamate dehydrogenase 2 [Arabidopsis thaliana] gi|332003775|gb|AED91158.1| glutamate dehydrogenase 2 [Arabidopsis thaliana]

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/411 (86%), Positives = 392/411 (95%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR+A+RILGLDSK+ERSL+IPFREIKVECTIPKDDG+LVSY+GFRVQHDN
Sbjct: 1   MNALAATNRNFRHASRILGLDSKIERSLMIPFREIKVECTIPKDDGTLVSYIGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSP++LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPRDLSLSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGIHTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVV+ATEALLAE+G++I+ LTFVIQGFGNVG+WAA+LIHE+GGKV+AVSDITG
Sbjct: 181 REAATGRGVVFATEALLAEYGKSIQGLTFVIQGFGNVGTWAAKLIHEKGGKVVAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           A++N +GIDI+ L+ HKD TGSL DF+GGD+M   ELL HECDVLIPCALGGVL +ENA 
Sbjct: 241 AIRNPEGIDINALIKHKDATGSLNDFNGGDAMNSDELLIHECDVLIPCALGGVLNKENAG 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           DVKAKFI+EAANHPTDP+ADEILSK+GV ILPDIYAN+GGVTVSYFEWVQNIQGFMWEE+
Sbjct: 301 DVKAKFIVEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMWEEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVN EL++YM RAFHNIK MC TH+CNLRMGAFTLGVNRVARAT LRGWEA
Sbjct: 361 KVNLELQKYMTRAFHNIKTMCHTHSCNLRMGAFTLGVNRVARATQLRGWEA 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134280|ref|XP_002321781.1| predicted protein [Populus trichocarpa] gi|222868777|gb|EEF05908.1| predicted protein [Populus trichocarpa]

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/411 (86%), Positives = 391/411 (95%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR+AARILGLDSK+E+SLLIPFREIKVECTIPKDDG+L SY+GFRVQHDN
Sbjct: 1   MNALAATNRNFRHAARILGLDSKVEKSLLIPFREIKVECTIPKDDGTLASYIGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWK+AVADIPYGGAKGGIGC+P +LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVADIPYGGAKGGIGCNPGDLSKSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIG+HTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGVHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVV+ATEALLAEHG++I+ LTF +QGFGNVGSWAA++IHERGGKVIAVSDI+G
Sbjct: 181 REAATGRGVVFATEALLAEHGKSIKGLTFAVQGFGNVGSWAAKIIHERGGKVIAVSDISG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AVKN +GIDI +L+ HK+ TGSLK+F GGDSM+ +ELL HECDVLIPCALGGVL RENAA
Sbjct: 241 AVKNPNGIDIPELIRHKESTGSLKNFQGGDSMDANELLVHECDVLIPCALGGVLNRENAA 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           DVKAKFIIEAANHPTDPEADEIL+K+GV +LPDIYANSGGVTVSYFEWVQNIQGFMW+E+
Sbjct: 301 DVKAKFIIEAANHPTDPEADEILAKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWDEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           +VN  L+ YM RAFHNIK MCQTH+CNLRMGAFTLGVNRVARAT LRGWEA
Sbjct: 361 QVNKTLQNYMTRAFHNIKVMCQTHDCNLRMGAFTLGVNRVARATLLRGWEA 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|272725401|gb|ACH97123.2| GDH2 [Camellia sinensis]

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/411 (87%), Positives = 389/411 (94%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR AARILGLDS++E+SLLIPFREIKVECTIPKDDG+LVSYVGFRVQHDN
Sbjct: 1   MNALAATNRNFRRAARILGLDSRIEKSLLIPFREIKVECTIPKDDGTLVSYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           +RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAD PYGGAKGGIGC PK+LSNSELERL
Sbjct: 61  SRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADTPYGGAKGGIGCKPKDLSNSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIG++ D+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGVNRDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGV+YATEALLAE+G++I+DLTF IQGFGNVGSWAARLIH RGGKVIAVSDITG
Sbjct: 181 REAATGRGVIYATEALLAEYGKSIKDLTFAIQGFGNVGSWAARLIHGRGGKVIAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AVKN +GIDI  LL HK+ TGSLK+FDGGD+M P+ELL H+CDVLIPCALGGV+ RENA 
Sbjct: 241 AVKNPNGIDIPILLNHKEATGSLKNFDGGDAMHPNELLLHKCDVLIPCALGGVINRENAD 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           +V+AKFI+EAANHPTDPEADEILSK+GV ILPDIYANSGGVTVSYFEWVQNIQGFMW+E+
Sbjct: 301 NVRAKFIVEAANHPTDPEADEILSKKGVIILPDIYANSGGVTVSYFEWVQNIQGFMWDEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVN EL RYM +AF NIK MCQTHNCNLRMGAFTLGV+RVARAT LRGWEA
Sbjct: 361 KVNKELHRYMTKAFGNIKSMCQTHNCNLRMGAFTLGVDRVARATVLRGWEA 411

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15004984|dbj|BAB62170.1| glutamate dehydrogenase [Brassica napus] gi|77019565|dbj|BAE45943.1| glutamate dehydrogenase 2 [Brassica napus]

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/411 (86%), Positives = 392/411 (95%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR+A+RILGLDSK+E+SL+IPFREIKVECTIPKDDG+LVSYVGFRVQHDN
Sbjct: 1   MNALAATNRNFRHASRILGLDSKIEKSLMIPFREIKVECTIPKDDGTLVSYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGC+P++LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRDLSLSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           T VFTQKIHDLIGIHTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct: 121 THVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVVYATEALLAE+G++I+ LTFV+QGFGNVG+WAA+LIHE+GGKV+AVSDITG
Sbjct: 181 REAATGRGVVYATEALLAEYGKSIKGLTFVVQGFGNVGTWAAKLIHEKGGKVVAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AV+N +G+DI  LL+HK+ TGSL DF GGD+M+ +ELL HECDVLIPCALGGVL +ENA 
Sbjct: 241 AVRNPEGLDIDALLSHKEATGSLVDFSGGDAMDSNELLIHECDVLIPCALGGVLNKENAG 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           DVKAKFIIEAANHPTDP+ADEILSK+GV ILPDIYAN+GGVTVSYFEWVQNIQGFMWEE+
Sbjct: 301 DVKAKFIIEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMWEEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVN EL++YM RAFHNIK MC TH+CNLRMGAFTLGVNRVARAT LRGWEA
Sbjct: 361 KVNLELQKYMTRAFHNIKSMCHTHSCNLRMGAFTLGVNRVARATQLRGWEA 411

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454888|ref|XP_002278945.1| PREDICTED: glutamate dehydrogenase [Vitis vinifera] gi|11691872|emb|CAC18730.1| NADH glutamate dehydrogenase [Vitis vinifera] gi|147765649|emb|CAN69242.1| hypothetical protein VITISV_042232 [Vitis vinifera] gi|297737388|emb|CBI26589.3| unnamed protein product [Vitis vinifera]

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/411 (86%), Positives = 388/411 (94%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR+A+RILGLDSKLE+SLLIPFREIKVECTIPKDDGSL +YVGFRVQHDN
Sbjct: 1   MNALAATNRNFRHASRILGLDSKLEKSLLIPFREIKVECTIPKDDGSLATYVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAV DIPYGGAKGGIGC+PK+LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVVDIPYGGAKGGIGCTPKDLSMSELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIG HTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI LGGSLG
Sbjct: 121 TRVFTQKIHDLIGTHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIALGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVV+ATEALLA+HG++I+ LTFVIQGFGNVGSW ARLI ERGGK+IAVSD+TG
Sbjct: 181 REAATGRGVVFATEALLAQHGKSIKGLTFVIQGFGNVGSWVARLIGERGGKIIAVSDVTG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AVKN +G+DI  LL HK++TG L +F GGD M+P+ELL HECDVLIPCALGGVL +ENAA
Sbjct: 241 AVKNQNGLDIVDLLRHKEETGCLTNFSGGDHMDPNELLTHECDVLIPCALGGVLNKENAA 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           DVKAKFIIEAANHPTDPEADEILSK+GV ILPDIYAN+GGVTVSYFEWVQNIQGFMWEE+
Sbjct: 301 DVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANAGGVTVSYFEWVQNIQGFMWEEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
           KVNNEL++YM +AFHNIK MCQ+HNC+LRMGAFTL VNRVA ATTLRGWEA
Sbjct: 361 KVNNELQKYMTKAFHNIKAMCQSHNCSLRMGAFTLAVNRVACATTLRGWEA 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
TAIR|locus:2183379	411	GDH2 "glutamate dehydrogenase	0.899	1.0	0.868	2.2e-199
TAIR|locus:2172309	411	GDH1 "glutamate dehydrogenase	0.899	1.0	0.798	2.6e-182
TAIR|locus:2079364	411	GDH3 "glutamate dehydrogenase	0.894	0.995	0.789	5.4e-182
UNIPROTKB|Q5HHC7	414	gluD "NAD-specific glutamate d	0.888	0.980	0.424	1e-93
UNIPROTKB|Q6GAW8	414	gluD "NAD-specific glutamate d	0.888	0.980	0.424	1e-93
UNIPROTKB|Q6GID0	414	gluD "NAD-specific glutamate d	0.888	0.980	0.424	1e-93
UNIPROTKB|Q7A1B9	414	gluD "NAD-specific glutamate d	0.888	0.980	0.424	1e-93
UNIPROTKB|Q7A6H8	414	gluD "NAD-specific glutamate d	0.888	0.980	0.424	1e-93
UNIPROTKB|Q99VD0	414	gluD "NAD-specific glutamate d	0.888	0.980	0.424	1e-93
TIGR_CMR|BA_1511	428	BA_1511 "glutamate dehydrogena	0.884	0.943	0.441	9e-93

TAIR|locus:2183379 GDH2 "glutamate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1930 (684.5 bits), Expect = 2.2e-199, P = 2.2e-199
 Identities = 357/411 (86%), Positives = 392/411 (95%)

Query:    47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
             MNALAAT+RNFR+A+RILGLDSK+ERSL+IPFREIKVECTIPKDDG+LVSY+GFRVQHDN
Sbjct:     1 MNALAATNRNFRHASRILGLDSKIERSLMIPFREIKVECTIPKDDGTLVSYIGFRVQHDN 60

Query:   107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
             ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSP++LS SELERL
Sbjct:    61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPRDLSLSELERL 120

Query:   167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
             TRVFTQKIHDLIGIHTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct:   121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180

Query:   227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
             REAATGRGVV+ATEALLAE+G++I+ LTFVIQGFGNVG+WAA+LIHE+GGKV+AVSDITG
Sbjct:   181 REAATGRGVVFATEALLAEYGKSIQGLTFVIQGFGNVGTWAAKLIHEKGGKVVAVSDITG 240

Query:   287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
             A++N +GIDI+ L+ HKD TGSL DF+GGD+M   ELL HECDVLIPCALGGVL +ENA 
Sbjct:   241 AIRNPEGIDINALIKHKDATGSLNDFNGGDAMNSDELLIHECDVLIPCALGGVLNKENAG 300

Query:   347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
             DVKAKFI+EAANHPTDP+ADEILSK+GV ILPDIYAN+GGVTVSYFEWVQNIQGFMWEE+
Sbjct:   301 DVKAKFIVEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMWEEE 360

Query:   407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
             KVN EL++YM RAFHNIK MC TH+CNLRMGAFTLGVNRVARAT LRGWEA
Sbjct:   361 KVNLELQKYMTRAFHNIKTMCHTHSCNLRMGAFTLGVNRVARATQLRGWEA 411

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005524 "ATP binding" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0004353 "glutamate dehydrogenase [NAD(P)+

TAIR|locus:2172309 GDH1 "glutamate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1769 (627.8 bits), Expect = 2.6e-182, P = 2.6e-182
 Identities = 328/411 (79%), Positives = 370/411 (90%)

Query:    47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
             MNALAAT+RNF+ AAR+LGLDSKLE+SLLIPFREIKVECTIPKDDG+L S+VGFRVQHDN
Sbjct:     1 MNALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query:   107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
             ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC P +LS SELERL
Sbjct:    61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSKLSISELERL 120

Query:   167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
             TRVFTQKIHDLIGIHTD+PAPDMGT  QTMAWILDEYSKFHG+SPAVVTGKPIDLGGSLG
Sbjct:   121 TRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLG 180

Query:   227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
             R+AATGRGV++ TEALL EHG+ I    FVIQGFGNVGSWAA+LI E+GGK++AVSDITG
Sbjct:   181 RDAATGRGVMFGTEALLNEHGKTISGQRFVIQGFGNVGSWAAKLISEKGGKIVAVSDITG 240

Query:   287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
             A+KN DGIDI  LL H  +   +K FDG D ++P+ +L  +CD+L+P ALGGV+ RENA 
Sbjct:   241 AIKNKDGIDIPALLKHTKEHRGVKGFDGADPIDPNSILVEDCDILVPAALGGVINRENAN 300

Query:   347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
             ++KAKFIIEAANHPTDP+ADEILSK+GV ILPDIYANSGGVTVSYFEWVQNIQGFMWEE+
Sbjct:   301 EIKAKFIIEAANHPTDPDADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEE 360

Query:   407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWEA 457
             KVN+EL+ YM R+F ++K MC+TH+C+LRMGAFTLGVNRVA+AT LRGW A
Sbjct:   361 KVNDELKTYMTRSFKDLKEMCKTHSCDLRMGAFTLGVNRVAQATILRGWGA 411

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005524 "ATP binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0004353 "glutamate dehydrogenase [NAD(P)+

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009646 "response to absence of light" evidence=IEP

TAIR|locus:2079364 GDH3 "glutamate dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1766 (626.7 bits), Expect = 5.4e-182, P = 5.4e-182
 Identities = 323/409 (78%), Positives = 367/409 (89%)

Query:    47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
             MNALAAT+RNF+ A+R+LGLDSKLE+SLLIPFREIKVECTIPKDDG+L S+VGFRVQHDN
Sbjct:     1 MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query:   107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
             ARGPMKGGIRYHPEV+PDEVNALAQLMTWKTAVA IPYGGAKGGIGC P ELS SELERL
Sbjct:    61 ARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSELSLSELERL 120

Query:   167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
             TRVFTQKIHDLIGIHTD+PAPDMGT  QTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
Sbjct:   121 TRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 180

Query:   227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
             R+AATGRGV++ATEALL EHG+ I    F IQGFGNVGSWAA+LI ++GGK++AVSD+TG
Sbjct:   181 RDAATGRGVLFATEALLNEHGKTISGQRFAIQGFGNVGSWAAKLISDKGGKIVAVSDVTG 240

Query:   287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
             A+KN +GIDI  LL H ++   +K FDG DS++P  +L  +CD+L+P ALGGV+ RENA 
Sbjct:   241 AIKNNNGIDILSLLEHAEENRGIKGFDGADSIDPDSILVEDCDILVPAALGGVINRENAN 300

Query:   347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
             ++KAKFIIE ANHPTDPEADEIL K+GV ILPDIYANSGGVTVSYFEWVQNIQGFMW+E+
Sbjct:   301 EIKAKFIIEGANHPTDPEADEILKKKGVMILPDIYANSGGVTVSYFEWVQNIQGFMWDEE 360

Query:   407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
             KVN EL+ YM R F ++K MCQTH+C+LRMGAFTLG+NRVA+ATT+RGW
Sbjct:   361 KVNRELKTYMTRGFKDLKEMCQTHSCDLRMGAFTLGINRVAQATTIRGW 409

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051171 "regulation of nitrogen compound metabolic process" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q5HHC7 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus COL (taxid:93062)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 174/410 (42%), Positives = 263/410 (64%)

Query:    48 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
             N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:   108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
              GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSLG 226
             R + + I   +G + DIPAPD+ TN+Q MAW++DEYS     +SP  +TGKPI LGGS G
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHG 185

Query:   227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
             R+ +T  GVV A E         I     VIQGFGN GS+ A+ +++ G K++ +SD  G
Sbjct:   186 RDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYG 245

Query:   287 AVKNADGIDIHKLLAHKDKTGSLKD-FDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
             A+ + +G+DI  LL  +D  G++ + F+  +++   EL   +CD+L+P A+   +  +NA
Sbjct:   246 ALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDILVPAAISNQITEDNA 303

Query:   346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
              D+KA  ++EAAN PT PEA  IL++RG+ ++PD+ A++GGVTVSYFEWVQN QG+ W E
Sbjct:   304 HDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSE 363

Query:   406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
             ++VN +LR  +  AF  I  + Q    ++R+ A+ +G+ R A A   RGW
Sbjct:   364 EEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q6GAW8 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus MSSA476 (taxid:282459)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 174/410 (42%), Positives = 263/410 (64%)

Query:    48 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
             N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:   108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
              GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSLG 226
             R + + I   +G + DIPAPD+ TN+Q MAW++DEYS     +SP  +TGKPI LGGS G
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHG 185

Query:   227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
             R+ +T  GVV A E         I     VIQGFGN GS+ A+ +++ G K++ +SD  G
Sbjct:   186 RDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYG 245

Query:   287 AVKNADGIDIHKLLAHKDKTGSLKD-FDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
             A+ + +G+DI  LL  +D  G++ + F+  +++   EL   +CD+L+P A+   +  +NA
Sbjct:   246 ALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDILVPAAISNQITEDNA 303

Query:   346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
              D+KA  ++EAAN PT PEA  IL++RG+ ++PD+ A++GGVTVSYFEWVQN QG+ W E
Sbjct:   304 HDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSE 363

Query:   406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
             ++VN +LR  +  AF  I  + Q    ++R+ A+ +G+ R A A   RGW
Sbjct:   364 EEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q6GID0 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus MRSA252 (taxid:282458)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 174/410 (42%), Positives = 263/410 (64%)

Query:    48 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
             N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:   108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
              GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSLG 226
             R + + I   +G + DIPAPD+ TN+Q MAW++DEYS     +SP  +TGKPI LGGS G
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHG 185

Query:   227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
             R+ +T  GVV A E         I     VIQGFGN GS+ A+ +++ G K++ +SD  G
Sbjct:   186 RDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYG 245

Query:   287 AVKNADGIDIHKLLAHKDKTGSLKD-FDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
             A+ + +G+DI  LL  +D  G++ + F+  +++   EL   +CD+L+P A+   +  +NA
Sbjct:   246 ALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDILVPAAISNQITEDNA 303

Query:   346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
              D+KA  ++EAAN PT PEA  IL++RG+ ++PD+ A++GGVTVSYFEWVQN QG+ W E
Sbjct:   304 HDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSE 363

Query:   406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
             ++VN +LR  +  AF  I  + Q    ++R+ A+ +G+ R A A   RGW
Sbjct:   364 EEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q7A1B9 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus MW2 (taxid:196620)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 174/410 (42%), Positives = 263/410 (64%)

Query:    48 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
             N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:   108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
              GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSLG 226
             R + + I   +G + DIPAPD+ TN+Q MAW++DEYS     +SP  +TGKPI LGGS G
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHG 185

Query:   227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
             R+ +T  GVV A E         I     VIQGFGN GS+ A+ +++ G K++ +SD  G
Sbjct:   186 RDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYG 245

Query:   287 AVKNADGIDIHKLLAHKDKTGSLKD-FDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
             A+ + +G+DI  LL  +D  G++ + F+  +++   EL   +CD+L+P A+   +  +NA
Sbjct:   246 ALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDILVPAAISNQITEDNA 303

Query:   346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
              D+KA  ++EAAN PT PEA  IL++RG+ ++PD+ A++GGVTVSYFEWVQN QG+ W E
Sbjct:   304 HDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSE 363

Query:   406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
             ++VN +LR  +  AF  I  + Q    ++R+ A+ +G+ R A A   RGW
Sbjct:   364 EEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q7A6H8 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus N315 (taxid:158879)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 174/410 (42%), Positives = 263/410 (64%)

Query:    48 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
             N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:   108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
              GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSLG 226
             R + + I   +G + DIPAPD+ TN+Q MAW++DEYS     +SP  +TGKPI LGGS G
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHG 185

Query:   227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
             R+ +T  GVV A E         I     VIQGFGN GS+ A+ +++ G K++ +SD  G
Sbjct:   186 RDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYG 245

Query:   287 AVKNADGIDIHKLLAHKDKTGSLKD-FDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
             A+ + +G+DI  LL  +D  G++ + F+  +++   EL   +CD+L+P A+   +  +NA
Sbjct:   246 ALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDILVPAAISNQITEDNA 303

Query:   346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
              D+KA  ++EAAN PT PEA  IL++RG+ ++PD+ A++GGVTVSYFEWVQN QG+ W E
Sbjct:   304 HDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSE 363

Query:   406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
             ++VN +LR  +  AF  I  + Q    ++R+ A+ +G+ R A A   RGW
Sbjct:   364 EEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q99VD0 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus Mu50 (taxid:158878)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 174/410 (42%), Positives = 263/410 (64%)

Query:    48 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
             N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:   108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
              GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSLG 226
             R + + I   +G + DIPAPD+ TN+Q MAW++DEYS     +SP  +TGKPI LGGS G
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHG 185

Query:   227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
             R+ +T  GVV A E         I     VIQGFGN GS+ A+ +++ G K++ +SD  G
Sbjct:   186 RDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYG 245

Query:   287 AVKNADGIDIHKLLAHKDKTGSLKD-FDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
             A+ + +G+DI  LL  +D  G++ + F+  +++   EL   +CD+L+P A+   +  +NA
Sbjct:   246 ALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDILVPAAISNQITEDNA 303

Query:   346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
              D+KA  ++EAAN PT PEA  IL++RG+ ++PD+ A++GGVTVSYFEWVQN QG+ W E
Sbjct:   304 HDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSE 363

Query:   406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
             ++VN +LR  +  AF  I  + Q    ++R+ A+ +G+ R A A   RGW
Sbjct:   364 EEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

TIGR_CMR|BA_1511 BA_1511 "glutamate dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 180/408 (44%), Positives = 264/408 (64%)

Query:    50 LAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARG 109
             L +T      A   LG  +++   L  P R + V+  +  DDG++  + G+R QH++A G
Sbjct:    22 LNSTQIVISEALEKLGYPNEVYELLKEPIRMMTVKIPVRMDDGTVKIFTGYRAQHNDAVG 81

Query:   110 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRV 169
             P KGGIR+HP V  +EV AL+  M+ K  + D+PYGG KGGI C P+E+S  ELERL+R 
Sbjct:    82 PTKGGIRFHPNVTENEVKALSIWMSLKCGIVDLPYGGGKGGIICDPREMSFRELERLSRG 141

Query:   170 FTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSLGRE 228
             + + I  ++G   DIPAPD+ TN+Q MAW++DEYS+    +SP  +TGKP+ LGGS GRE
Sbjct:   142 YVRAISQIVGPTKDIPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRE 201

Query:   229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAV 288
              AT +GV         +    I+    V+QGFGN GS+ A+ +H+ G KVIA+SD  GA+
Sbjct:   202 TATAKGVTICIREAAKKRDIDIKGARVVVQGFGNAGSFLAKFMHDAGAKVIAISDAYGAL 261

Query:   289 KNADGIDIHKLLAHKDKTGSL-KDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAAD 347
              + +G+DI  LL  +D  G++ K F+  +++   ELL  +CD+L+P A+   +  ENA D
Sbjct:   262 HDPNGLDIDYLLDRRDSFGTVTKLFN--NTISNKELLELDCDILVPAAIENQITEENAND 319

Query:   348 VKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDK 407
             +KAK ++EAAN PT  EA +IL+ RG+ ++PD+ A++GGVTVSYFEWVQN QG+ W E++
Sbjct:   320 IKAKIVVEAANGPTTLEATKILTDRGILLVPDVLASAGGVTVSYFEWVQNNQGYYWTEEE 379

Query:   408 VNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
             V   L + M+R+F +I    Q    N+R+ A+ +GV ++A A+  RGW
Sbjct:   380 VEQRLEKVMVRSFDSIYETAQVRKVNMRLAAYMVGVRKMAEASRFRGW 427

GO:0004353 "glutamate dehydrogenase [NAD(P)+

GO:0006537 "glutamate biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52596	DHE3_VITVI	1, ., 4, ., 1, ., 3	0.8661	0.8993	1.0	yes	no
P96110	DHE3_THEMA	1, ., 4, ., 1, ., 3	0.4887	0.8730	0.9591	yes	no
Q6GID0	DHE2_STAAR	1, ., 4, ., 1, ., 2	0.4243	0.8884	0.9806	yes	no
Q43260	DHE3_MAIZE	1, ., 4, ., 1, ., 3	0.8126	0.8993	1.0	N/A	no
Q38946	DHE2_ARATH	1, ., 4, ., 1, ., 3	0.8686	0.8993	1.0	yes	no
Q9YC65	DHE3_AERPE	1, ., 4, ., 1, ., 3	0.4043	0.8927	0.9760	yes	no
P39633	DHE2_BACSU	1, ., 4, ., 1, ., 2	0.4292	0.8927	0.9622	yes	no
Q7A1B9	DHE2_STAAW	1, ., 4, ., 1, ., 2	0.4243	0.8884	0.9806	yes	no
P29051	DHE41_HALSI	1, ., 4, ., 1, ., 2	0.4460	0.8884	0.9333	yes	no
Q5HHC7	DHE2_STAAC	1, ., 4, ., 1, ., 2	0.4243	0.8884	0.9806	yes	no
P27346	DHE2_CLODI	1, ., 4, ., 1, ., 2	0.4240	0.8949	0.9714	yes	no
Q47950	DHE3_PYRAB	1, ., 4, ., 1, ., 3	0.4482	0.8774	0.9547	yes	no
Q7A6H8	DHE2_STAAN	1, ., 4, ., 1, ., 2	0.4243	0.8884	0.9806	yes	no
O59650	DHE3_PYRKO	1, ., 4, ., 1, ., 3	0.4258	0.9015	0.9786	yes	no
P93541	DHE3_SOLLC	1, ., 4, ., 1, ., 3	0.7936	0.8993	0.9975	N/A	no
P94598	DHE3_BACTN	1, ., 4, ., 1, ., 3	0.3241	0.8315	0.8558	yes	no
P80319	DHE3_PYRFU	1, ., 4, ., 1, ., 3	0.4507	0.8774	0.9547	yes	no
P0CL72	DHE3_PYRHR	1, ., 4, ., 1, ., 3	0.4433	0.8774	0.9547	yes	no
P0CL73	DHE3_PYRHO	1, ., 4, ., 1, ., 3	0.4433	0.8774	0.9547	yes	no
Q9S7A0	DHE3_ARATH	1, ., 4, ., 1, ., 3	0.7897	0.8949	0.9951	no	no
Q43314	DHE1_ARATH	1, ., 4, ., 1, ., 3	0.7980	0.8993	1.0	no	no
Q6GAW8	DHE2_STAAS	1, ., 4, ., 1, ., 2	0.4243	0.8884	0.9806	yes	no
Q9LEC8	DHEB_NICPL	1, ., 4, ., 1, ., 3	0.7931	0.8993	1.0	N/A	no
Q99VD0	DHE2_STAAM	1, ., 4, ., 1, ., 2	0.4243	0.8884	0.9806	yes	no
P80053	DHE2_SULSO	1, ., 4, ., 1, ., 3	0.4267	0.8752	0.9523	yes	no
O04937	DHEA_NICPL	1, ., 4, ., 1, ., 3	0.8710	0.8993	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.4.1	0.983
3rd Layer	1.4.1.3	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	457
PLN02477	410	PLN02477, PLN02477, glutamate dehydrogenase	0.0
COG0334	411	COG0334, GdhA, Glutamate dehydrogenase/leucine deh	1e-180
cd01076	227	cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain	1e-119
pfam00208	237	pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenyl	1e-104
PRK14031	444	PRK14031, PRK14031, glutamate dehydrogenase; Provi	1e-64
PRK09414	445	PRK09414, PRK09414, glutamate dehydrogenase; Provi	6e-63
pfam02812	131	pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydr	1e-62
cd05211	217	cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding	3e-59
PTZ00079	454	PTZ00079, PTZ00079, NADP-specific glutamate dehydr	9e-59
PRK14030	445	PRK14030, PRK14030, glutamate dehydrogenase; Provi	3e-53
cd05313	254	cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain	9e-38
smart00839	102	smart00839, ELFV_dehydrog, Glutamate/Leucine/Pheny	1e-33
cd01075	200	cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding d	6e-23
PTZ00324	1002	PTZ00324, PTZ00324, glutamate dehydrogenase 2; Pro	2e-10
PRK06270	341	PRK06270, PRK06270, homoserine dehydrogenase; Prov	5e-08
cd05191	86	cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do	3e-06
PRK06392	326	PRK06392, PRK06392, homoserine dehydrogenase; Prov	3e-04
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	0.004

>gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase

 Score =  836 bits (2162), Expect = 0.0
 Identities = 342/410 (83%), Positives = 374/410 (91%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           MNALAAT+RNFR AAR+LGLDSKLE+SLLIPFREIKVECTIPKDDG+L S+VGFRVQHDN
Sbjct: 1   MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA+IPYGGAKGGIGC P++LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERL 120

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG 226
           TRVFTQKIHDLIGIHTD+PAPDMGTNAQTMAWILDEYSKFHG SPAVVTGKPIDLGGSLG
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLG 180

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           REAATGRGVV+ATEALLAEHG++I   TFVIQGFGNVGSWAA+LIHE+GGK++AVSDITG
Sbjct: 181 REAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITG 240

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
           AVKN +G+DI  L  H  + G LK F GGD ++P ++L   CDVLIP ALGGV+ +ENAA
Sbjct: 241 AVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAA 300

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
           DVKAKFI+EAANHPTDPEADEIL K+GV +LPDIYANSGGVTVSYFEWVQNIQGFMWEE+
Sbjct: 301 DVKAKFIVEAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEE 360

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWE 456
           KVN EL RYM  AF  +K MC+THNC+LRMGAFTLGVNRVARAT LRGWE
Sbjct: 361 KVNRELDRYMTDAFKALKEMCKTHNCSLRMGAFTLGVNRVARATVLRGWE 410

Length = 410

>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

 Score =  509 bits (1314), Expect = e-180
 Identities = 199/409 (48%), Positives = 263/409 (64%), Gaps = 1/409 (0%)

Query: 48  NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
           N      +    A   L LD  +   L  P R I+V   +  DDGS+  + G+RVQH++A
Sbjct: 2   NEFEQAVKELEKALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSA 61

Query: 108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
            GP KGG+R+HP V  +EV AL+  MT K A+A +PYGG KGGI   PK LS+ ELERL+
Sbjct: 62  LGPYKGGVRFHPYVTLEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLS 121

Query: 168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSLG 226
           R F + I+ LIG  TDIPAPD+GTN Q MAW++DEYSK  G+ +P V TGKP++LGGSLG
Sbjct: 122 RAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLG 181

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           R  ATG GV YA    L   G  +      +QGFGNVG +AA  +HE G KV+AVSD  G
Sbjct: 182 RSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
            + + DG+D+  LL  K++ GS+ ++ G + +   ELL  +CD+LIPCAL  V+  +NA 
Sbjct: 242 GIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNAD 301

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
            +KAK ++E AN PT PEADEIL +RG+ ++PDI AN+GGV VSY EWVQN QG  W E+
Sbjct: 302 QLKAKIVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEE 361

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           +V+ +L R M+ AF  +    + +  +LR  A+ L   RVA A   RGW
Sbjct: 362 EVDEKLERIMVNAFEAVYQAAKEYGVDLRTAAYILAFERVADAMKARGW 410

Length = 411

>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

 Score =  346 bits (891), Expect = e-119
 Identities = 120/227 (52%), Positives = 153/227 (67%)

Query: 222 GGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281
           GGSLGRE ATGRGV YAT   L + G  +      IQGFGNVGS AAR +HE G KV+AV
Sbjct: 1   GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAV 60

Query: 282 SDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLK 341
           SD  G + N DG+D+  LLA+K + GS+  F G + +   ELL  +CD+LIP AL   + 
Sbjct: 61  SDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQIT 120

Query: 342 RENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGF 401
            +NA  +KAK I+EAAN PT PEADEIL +RGV ++PDI AN+GGVTVSYFEWVQN+QGF
Sbjct: 121 ADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDILANAGGVTVSYFEWVQNLQGF 180

Query: 402 MWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVAR 448
            W+E++VN+ L   M  AF  +    + +  +LR  A+ L + RVA 
Sbjct: 181 YWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVAE 227

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 227

>gnl|CDD|215789 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

 Score =  309 bits (793), Expect = e-104
 Identities = 104/237 (43%), Positives = 142/237 (59%), Gaps = 4/237 (1%)

Query: 222 GGSLGREAATGRGVVYATEALLAE-HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIA 280
           GGSLGR  ATG GVVY  E  L +  G ++   T  +QGFGNVGS+AA  + E G KV+A
Sbjct: 1   GGSLGRPEATGYGVVYFVEEALKKLGGDSLEGKTVAVQGFGNVGSYAAEKLLELGAKVVA 60

Query: 281 VSDITGAVKNADGIDIHKLLAHKDKTGS-LKDFDG--GDSMEPSELLAHECDVLIPCALG 337
           VSD +G + + +GIDI +LL  K++ G  + ++ G   + +   EL   +CD+L+PCA  
Sbjct: 61  VSDSSGYIYDPNGIDIEELLELKEEGGGRVVEYAGSGAEYISGEELWEIDCDILVPCATQ 120

Query: 338 GVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQN 397
             +  ENA  +KAK ++E AN PT PEADEIL +RG+   PD  AN+GGVTVSY E VQN
Sbjct: 121 NEINEENAKLIKAKAVVEGANMPTTPEADEILEERGILYAPDKAANAGGVTVSYLEMVQN 180

Query: 398 IQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
                W E++V+ +L + M   F  +    + +  +LR  A   G  RVA A   RG
Sbjct: 181 SSRLSWTEEEVDEKLEKIMTNIFEAVVETAKEYGIDLRTAANIAGFERVADAMKARG 237

Length = 237

>gnl|CDD|184464 PRK14031, PRK14031, glutamate dehydrogenase; Provisional

 Score =  214 bits (546), Expect = 1e-64
 Identities = 132/405 (32%), Positives = 196/405 (48%), Gaps = 29/405 (7%)

Query: 70  LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
           +ER L IP R  +   T   D G++ + +G+RVQH+NA GP KGGIR+H  V+   +  L
Sbjct: 47  IER-LCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHASVNLGILKFL 105

Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
           A   T+K ++  +P GG KGG   SP+  SN+E+ R  + F  ++   IG  TD+PA D+
Sbjct: 106 AFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDI 165

Query: 190 GTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQA 249
           G   + + ++   Y K         TGK  + GGSL R  ATG G +Y    +L   G  
Sbjct: 166 GVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTD 225

Query: 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309
           ++    ++ G GNV  + A  + E GGKV+ +SD  G + + DGID  KL    D    L
Sbjct: 226 LKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKL----DYIMEL 281

Query: 310 KDFDGGDSMEPSELL-----------AHECDVLIPCALGGVLKRENAADVKAKFII---E 355
           K+   G   E +E               + D+ +P A    L  ++A  + A  +I   E
Sbjct: 282 KNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQNELNGDDARQLVANGVIAVSE 341

Query: 356 AANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRY 415
            AN P+ PEA ++     +   P   AN+GGV+VS  E  QN     W  ++V+ +L+  
Sbjct: 342 GANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSI 401

Query: 416 MIRAFHNIKGMCQTHN------CNLRMGAFTLGVNRVARATTLRG 454
           M     NI   C  +        N   GA   G  +VA+A   +G
Sbjct: 402 M----KNIHEACVQYGTEADGYVNYVKGANVAGFMKVAKAMMAQG 442

Length = 444

>gnl|CDD|181834 PRK09414, PRK09414, glutamate dehydrogenase; Provisional

 Score =  209 bits (536), Expect = 6e-63
 Identities = 121/365 (33%), Positives = 177/365 (48%), Gaps = 19/365 (5%)

Query: 99  GFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKEL 158
           GFRVQ ++A GP KGG+R+HP V+   +  L     +K A+  +P GG KGG    PK  
Sbjct: 79  GFRVQFNSAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGK 138

Query: 159 SNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKP 218
           S++E+ R  + F  +++  IG  TD+PA D+G   + + ++  +Y +       V+TGK 
Sbjct: 139 SDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKG 198

Query: 219 IDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKV 278
           +  GGSL R  ATG G+VY  E +L   G +      V+ G GNV  +A     + G KV
Sbjct: 199 LSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKV 258

Query: 279 IAVSDITGAVKNADGIDIHKLLAHKD-KTGSLKD--------FDGGDSMEPSELLAHECD 329
           +  SD +G V + +GID+ KL   K+ + G + +        +  G S       +  CD
Sbjct: 259 VTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS-----PWSVPCD 313

Query: 330 VLIPCALGGVLKRENAADVKA---KFIIEAANHPTDPEADEILSKRGVTILPDIYANSGG 386
           + +PCA    L  E+A  + A   K + E AN P+ PEA E+  + GV   P   AN+GG
Sbjct: 314 IALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGG 373

Query: 387 VTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIK--GMCQTHNCNLRMGAFTLGVN 444
           V  S  E  QN     W  ++V+  L   M    H             N   GA   G  
Sbjct: 374 VATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHHACVETAEEYGKPGNYVAGANIAGFV 433

Query: 445 RVARA 449
           +VA A
Sbjct: 434 KVADA 438

Length = 445

>gnl|CDD|202408 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

 Score =  198 bits (507), Expect = 1e-62
 Identities = 68/131 (51%), Positives = 88/131 (67%)

Query: 77  PFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 136
           P R I+V   +  DDG +    G+RVQH+ A GP KGGIR+HP V  +EV  LA  MT+K
Sbjct: 1   PERVIQVRVPVRMDDGEVEGLRGYRVQHNTALGPAKGGIRFHPYVTLEEVKRLAFGMTYK 60

Query: 137 TAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTM 196
            A+A +P+GG KGGI   PK LS++ELERLTR F +++  +IG   DIPAPD+GT  + M
Sbjct: 61  NALAGLPFGGGKGGIIGDPKGLSDAELERLTRAFGRELESIIGPGRDIPAPDVGTGPREM 120

Query: 197 AWILDEYSKFH 207
           AWI DEY +  
Sbjct: 121 AWIADEYRRVT 131

Length = 131

>gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

 Score =  193 bits (491), Expect = 3e-59
 Identities = 85/218 (38%), Positives = 122/218 (55%), Gaps = 1/218 (0%)

Query: 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVK 289
           ATG GVV A +A +   G ++  LT  +QG GNVG   A+ + E GGKV+AVSD  G + 
Sbjct: 1   ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIY 60

Query: 290 NADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVK 349
           +  GI   +L+ +    G        D      +L  + D+  PCALG V+  ENA  +K
Sbjct: 61  DP-GITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLK 119

Query: 350 AKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVN 409
           AK + E AN+PT  EA  IL +RG+ + PDI AN+GGV VSYFEWVQN+Q   W+ ++V 
Sbjct: 120 AKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIVSYFEWVQNLQRLSWDAEEVR 179

Query: 410 NELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVA 447
           ++L + M    + +  + +     +R  A  L   R+A
Sbjct: 180 SKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA 217

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parrallel to the others. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 217

>gnl|CDD|185433 PTZ00079, PTZ00079, NADP-specific glutamate dehydrogenase; Provisional

 Score =  199 bits (507), Expect = 9e-59
 Identities = 117/367 (31%), Positives = 178/367 (48%), Gaps = 19/367 (5%)

Query: 99  GFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKEL 158
           GFRVQ+++A GP KGG+R+HP V+   +  L     +K ++  +P GG KGG    PK  
Sbjct: 84  GFRVQYNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGK 143

Query: 159 SNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKP 218
           S++E+ R  + F  +++  IG  TD+PA D+G   + + ++  +Y K   +    +TGK 
Sbjct: 144 SDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKN 203

Query: 219 IDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKV 278
           +  GGS  R  ATG G+VY    +L +   ++   T V+ G GNV  +A   + + G KV
Sbjct: 204 VKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKV 263

Query: 279 IAVSDITGAVKNADGIDIHKLLAHKD----KTGSLKDFDGGDSM-------EPSELLAHE 327
           + +SD  G +   +G    KL    D    K G LK++    S        +P E+    
Sbjct: 264 LTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEV---P 320

Query: 328 CDVLIPCALGGVLKRENAA---DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANS 384
           CD+  PCA    +  E+A        K + E AN PT  EA  +  K GV   P   AN+
Sbjct: 321 CDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANA 380

Query: 385 GGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHN--CNLRMGAFTLG 442
           GGV +S  E  QN     W  ++V+ +LR  M   F       + +    +L  GA   G
Sbjct: 381 GGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEACVKYAEKYGGKSDLVAGANIAG 440

Query: 443 VNRVARA 449
             +VA +
Sbjct: 441 FLKVADS 447

Length = 454

>gnl|CDD|184463 PRK14030, PRK14030, glutamate dehydrogenase; Provisional

 Score =  184 bits (469), Expect = 3e-53
 Identities = 120/387 (31%), Positives = 174/387 (44%), Gaps = 31/387 (8%)

Query: 90  DDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKG 149
           D G +   +G+RVQ +NA GP KGGIR+HP V+   +  L    T+K A+  +P GG KG
Sbjct: 66  DKGEVQVNLGYRVQFNNAIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKG 125

Query: 150 GIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH 209
           G   SP+  S++E+ R  + F  ++   IG  TD+PA D+G   + + ++   Y K    
Sbjct: 126 GSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTRE 185

Query: 210 SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAAR 269
               +TGK ++ GGSL R  ATG G +Y    +L   G  I+  T  I GFGNV   AA 
Sbjct: 186 FTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAAT 245

Query: 270 LIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP-------SE 322
              E G KV+ +S   G + + DGI   K+    D    L+   G D + P       S 
Sbjct: 246 KATELGAKVVTISGPDGYIYDPDGISGEKI----DYMLELRA-SGNDIVAPYAEKFPGST 300

Query: 323 LLA------HECDVLIPCALGGVLKRENAADV---KAKFIIEAANHPTDPEADEILSKRG 373
             A       + D+ +PCA    L  E+A  +       + E +N     EA +      
Sbjct: 301 FFAGKKPWEQKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAK 360

Query: 374 VTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHN-- 431
               P    N+GGV  S  E  QN     W  ++V+ +L + M      I   C  +   
Sbjct: 361 QLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIM----SGIHEQCVKYGKE 416

Query: 432 ----CNLRMGAFTLGVNRVARATTLRG 454
                N   GA   G  +VA+A   +G
Sbjct: 417 GDGYINYVKGANIAGFMKVAKAMLAQG 443

Length = 445

>gnl|CDD|133455 cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

 Score =  137 bits (348), Expect = 9e-38
 Identities = 81/257 (31%), Positives = 114/257 (44%), Gaps = 31/257 (12%)

Query: 215 TGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER 274
           TGK +  GGSL R  ATG G+VY  E +L +  + ++     I G GNV  +AA  + E 
Sbjct: 1   TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL 60

Query: 275 GGKVIAVSDITGAVKNADGI---DIHKLL-----------AHKDKTGSLKDFDGGDSMEP 320
           G KV+ +SD  G V + DG     + +L             +  K G+ K F+G    E 
Sbjct: 61  GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWE- 119

Query: 321 SELLAHECDVLIPCALGGVLKRENAADVKA------KFIIEAANHPTDPEADEILSKRGV 374
                  CD+  PCA    +   +A D K       K++ E AN P   EA E+  + GV
Sbjct: 120 -----VPCDIAFPCATQNEV---DAEDAKLLVKNGCKYVAEGANMPCTAEAIEVFRQAGV 171

Query: 375 TILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQT--HNC 432
              P   AN+GGV VS  E  QN Q   W  ++V+ +L+  M           +      
Sbjct: 172 LFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGDPP 231

Query: 433 NLRMGAFTLGVNRVARA 449
           +L  GA   G  +VA A
Sbjct: 232 DLVAGANIAGFLKVADA 248

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|214847 smart00839, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

 Score =  121 bits (307), Expect = 1e-33
 Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 328 CDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGV 387
           CD+ IPCAL  V+   NA  + AK I E AN P   EAD+IL  RGV   PD  AN+GGV
Sbjct: 3   CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGV 62

Query: 388 TVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTH 430
            VS  E +QN+       ++V  +L   M  A   I    Q +
Sbjct: 63  IVSALEMLQNLAR---TAEEVFTDLSEIMRNALEEIFETAQKY 102

Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Length = 102

>gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

 Score = 95.7 bits (239), Expect = 6e-23
 Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 23/161 (14%)

Query: 231 TGRGVVYATEALLAEH---GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGA 287
           T  GV    +A  AEH     ++   T  +QG G VG   A  + E G K+I V+DI   
Sbjct: 5   TAYGVFLGMKAA-AEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADI--- 59

Query: 288 VKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAAD 347
                         +++      +  G   + P E+ + + DV  PCALGGV+  +    
Sbjct: 60  --------------NEEAVARAAELFGATVVAPEEIYSVDADVFAPCALGGVINDDTIPQ 105

Query: 348 VKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGGV 387
           +KAK I  AAN+   DP   ++L +RG+   PD   N+GG+
Sbjct: 106 LKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGL 146

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 200

>gnl|CDD|240359 PTZ00324, PTZ00324, glutamate dehydrogenase 2; Provisional

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 83/335 (24%), Positives = 124/335 (37%), Gaps = 79/335 (23%)

Query: 124 DEVNALA--QLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIH---DLI 178
           DE   LA  QL+  K    DIP GG+KG I  S + L+     R    F Q I    D++
Sbjct: 521 DENYNLASTQLLKNK----DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVM 576

Query: 179 --------GIHTD---IPAPDMGTNAQTMAWILDEYSKFHGHS--PAVVTGKPIDLGG-- 223
                    +  +      PD  T    M W    ++K  G+    +  TGK   +GG  
Sbjct: 577 LPGEKVVDHLKQEEIIFLGPDEHTTGTLMDWA-ALHAKKRGYPFWKSFTTGKSPSMGGIP 635

Query: 224 --SLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIA 280
             + G    + R  V      L  + + +    F   G  G++GS    L  E   K + 
Sbjct: 636 HDTYGMTTRSVRAYVTGILEKLGLNEEEVT--KFQTGGPDGDLGSNELLLSKE---KTVG 690

Query: 281 VSDITGAVKNADGIDIHKL--LAHKDKTGSLKDFD---------------------GGDS 317
           + D +G + + +G++  +L  LAH       ++FD                      G  
Sbjct: 691 IVDGSGVLHDPEGLNREELRRLAHHRL--PAREFDESKLSPQGFLVLTDDRDVKLPDGTI 748

Query: 318 MEPSELLAHE--------CDVLIPCALGGVLKRENAADV-----------KAKFIIEAAN 358
           +E      +E         DV +PC  GG  +     +V           + K I+E AN
Sbjct: 749 VESGLRFRNEFHLLPYSDADVFVPC--GGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGAN 806

Query: 359 HPTDPEADEILSKRGVTILPDIYANSGGVTVSYFE 393
                +A   L + GV +  D  AN GGVT S  E
Sbjct: 807 LFITQDARLALEECGVILFKDASANKGGVTSSSLE 841

Length = 1002

>gnl|CDD|235763 PRK06270, PRK06270, homoserine dehydrogenase; Provisional

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 34/120 (28%)

Query: 259 GFGNVGSWAARLIHERGG----------KVIAVSDITGAVKNADGIDIHKLLAHKDKTGS 308
           GFG VG   A L+ E+            KV+A++D +G+  + DG+D+   L  K++TG 
Sbjct: 9   GFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGK 68

Query: 309 LKDF-DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADE 367
           L D+ +GG  +   E++                 R   ADV    ++EA   PT+ E  E
Sbjct: 69  LADYPEGGGEISGLEVI-----------------RSVDADV----VVEAT--PTNIETGE 105

Length = 341

>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284
           AT  G V   +A      ++++  T V+ G G VG   A+L+ + GGK + + D 
Sbjct: 1   ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 86

>gnl|CDD|102354 PRK06392, PRK06392, homoserine dehydrogenase; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 257 IQGFGNVGSWAARLIHER--------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS 308
           I G GNVG    R+I  R        G  V++VSD   +  N  G+DI K++++K+K G 
Sbjct: 5   IIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GR 63

Query: 309 LKDFDGGDSMEPSELLAHECDVLIPC 334
           L++ D  + ++  E+   + DV++  
Sbjct: 64  LEEID-YEKIKFDEIFEIKPDVIVDV 88

Length = 326

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 15/66 (22%)

Query: 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS---------------DITGAVKNA 291
           G+ IRDLT  I G G +GS AA++    G KVIA                  +   +K A
Sbjct: 140 GREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIAYDPYPNPELEKFLLYYDSLEDLLKQA 199

Query: 292 DGIDIH 297
           D I +H
Sbjct: 200 DIISLH 205

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	457
PLN02477	410	glutamate dehydrogenase	100.0
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	100.0
PRK14030	445	glutamate dehydrogenase; Provisional	100.0
PRK09414	445	glutamate dehydrogenase; Provisional	100.0
PRK14031	444	glutamate dehydrogenase; Provisional	100.0
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	100.0
KOG2250	514	consensus Glutamate/leucine/phenylalanine/valine d	100.0
PTZ00324	1002	glutamate dehydrogenase 2; Provisional	100.0
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	100.0
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	100.0
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	100.0
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	100.0
PF02812	131	ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, di	100.0
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	100.0
PF05088	1528	Bac_GDH: Bacterial NAD-glutamate dehydrogenase	100.0
COG2902	1592	NAD-specific glutamate dehydrogenase [Amino acid t	100.0
smart00839	102	ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Vali	99.96
PRK08374	336	homoserine dehydrogenase; Provisional	99.28
PRK06392	326	homoserine dehydrogenase; Provisional	99.08
PRK06270	341	homoserine dehydrogenase; Provisional	98.71
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.65
PLN02700	377	homoserine dehydrogenase family protein	98.25
PRK06813	346	homoserine dehydrogenase; Validated	98.05
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.85
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.81
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	97.74
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.69
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	97.6
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.51
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	97.4
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.34
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.33
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.3
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.22
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.16
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.05
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.04
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.02
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.99
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.91
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.85
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.8
PRK13243	333	glyoxylate reductase; Reviewed	96.75
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.73
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.72
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.69
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.66
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.65
PLN02494	477	adenosylhomocysteinase	96.64
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.6
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.57
PLN03129	581	NADP-dependent malic enzyme; Provisional	96.5
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.47
PRK06932	314	glycerate dehydrogenase; Provisional	96.45
PRK12861	764	malic enzyme; Reviewed	96.43
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	96.43
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.4
PRK07574	385	formate dehydrogenase; Provisional	96.39
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.36
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.32
PLN02928	347	oxidoreductase family protein	96.3
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.26
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.24
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.23
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.2
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	96.16
PLN03139	386	formate dehydrogenase; Provisional	96.15
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.14
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.12
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.04
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.03
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.0
PRK13529	563	malate dehydrogenase; Provisional	95.99
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.99
PRK06436	303	glycerate dehydrogenase; Provisional	95.97
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.92
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.92
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.9
PRK06487	317	glycerate dehydrogenase; Provisional	95.89
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.88
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.81
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.81
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.78
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	95.77
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.75
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.74
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.72
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.68
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.68
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.68
PTZ00317	559	NADP-dependent malic enzyme; Provisional	95.68
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.67
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.65
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.64
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.62
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.6
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.58
PLN00203	519	glutamyl-tRNA reductase	95.54
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.52
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.5
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.49
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.45
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.43
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.41
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.39
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.39
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	95.35
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.33
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.31
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.3
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	95.27
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.26
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.26
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	95.24
PRK12862	763	malic enzyme; Reviewed	95.23
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	95.21
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.16
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.09
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	95.03
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.0
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.96
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.88
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.87
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.87
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.86
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.85
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	94.84
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	94.79
PRK06349	426	homoserine dehydrogenase; Provisional	94.76
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.63
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.58
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.54
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	94.47
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.47
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	94.45
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	94.4
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.23
PRK08328	231	hypothetical protein; Provisional	94.22
PRK08223	287	hypothetical protein; Validated	94.09
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.09
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	94.07
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.04
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.03
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	94.01
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.99
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.95
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.8
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	93.8
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	93.79
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	93.76
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.76
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.63
PRK07680	273	late competence protein ComER; Validated	93.51
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	93.51
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.47
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	93.47
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.46
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	93.33
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	93.33
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	93.27
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	93.15
PRK12480	330	D-lactate dehydrogenase; Provisional	93.15
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.13
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	93.09
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	93.08
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.04
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	93.01
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.93
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.84
TIGR00036	266	dapB dihydrodipicolinate reductase.	92.83
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.8
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.79
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.72
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	92.62
PRK15059	292	tartronate semialdehyde reductase; Provisional	92.56
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.53
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.49
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	92.41
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	92.39
PRK14851	679	hypothetical protein; Provisional	92.38
PRK07340	304	ornithine cyclodeaminase; Validated	92.36
PRK12548	289	shikimate 5-dehydrogenase; Provisional	92.33
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.3
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	92.07
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.99
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	91.97
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	91.92
PLN02306	386	hydroxypyruvate reductase	91.84
PRK07877	722	hypothetical protein; Provisional	91.66
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	91.56
PRK13403	335	ketol-acid reductoisomerase; Provisional	91.46
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	91.4
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.39
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	91.34
COG5322	351	Predicted dehydrogenase [General function predicti	91.29
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	91.28
PRK05479	330	ketol-acid reductoisomerase; Provisional	91.27
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	91.22
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	91.17
PRK06567	1028	putative bifunctional glutamate synthase subunit b	91.16
COG2344	211	AT-rich DNA-binding protein [General function pred	91.15
PRK14852	989	hypothetical protein; Provisional	91.14
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	91.09
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	90.99
PRK06141	314	ornithine cyclodeaminase; Validated	90.99
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	90.77
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	90.68
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	90.64
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	90.62
PRK08300	302	acetaldehyde dehydrogenase; Validated	90.56
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	90.14
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	90.13
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	90.06
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.87
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	89.85
PRK14982	340	acyl-ACP reductase; Provisional	89.84
PRK13303	265	L-aspartate dehydrogenase; Provisional	89.83
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	89.82
PRK08605	332	D-lactate dehydrogenase; Validated	89.81
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	89.8
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	89.79
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	89.74
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	89.73
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	89.59
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	89.55
KOG0409	327	consensus Predicted dehydrogenase [General functio	89.53
PRK03562	621	glutathione-regulated potassium-efflux system prot	89.38
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	89.25
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.18
PLN02688	266	pyrroline-5-carboxylate reductase	89.11
PLN02858	1378	fructose-bisphosphate aldolase	88.76
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	88.5
PRK10669	558	putative cation:proton antiport protein; Provision	88.38
PLN02712	667	arogenate dehydrogenase	88.34
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	88.24
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	88.23
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.18
COG2130	340	Putative NADP-dependent oxidoreductases [General f	88.13
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	88.12
PRK07417	279	arogenate dehydrogenase; Reviewed	88.1
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	88.06
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	87.83
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.82
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	87.78
PRK06046	326	alanine dehydrogenase; Validated	87.64
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	87.56
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.56
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	87.51
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	87.26
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.19
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	87.13
PRK15116	268	sulfur acceptor protein CsdL; Provisional	86.94
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.88
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	86.71
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	86.68
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	86.66
PRK04148	134	hypothetical protein; Provisional	86.56
PLN02858	1378	fructose-bisphosphate aldolase	86.56
KOG0089	309	consensus Methylenetetrahydrofolate dehydrogenase/	86.39
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.3
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	86.09
PRK05717	255	oxidoreductase; Validated	86.01
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	85.73
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	85.72
PLN02256	304	arogenate dehydrogenase	85.62
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	85.42
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	85.37
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.0
PRK08618	325	ornithine cyclodeaminase; Validated	84.98
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.82
PRK05225	487	ketol-acid reductoisomerase; Validated	84.8
PRK06153	393	hypothetical protein; Provisional	84.78
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	84.54
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	84.19
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	84.03
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	84.0
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	83.96
PTZ00082	321	L-lactate dehydrogenase; Provisional	83.78
TIGR03628	114	arch_S11P archaeal ribosomal protein S11P. This mo	83.68
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	83.49
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.45
PRK08628	258	short chain dehydrogenase; Provisional	83.21
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	83.15
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	83.11
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.91
PRK07523	255	gluconate 5-dehydrogenase; Provisional	82.83
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	82.74
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.72
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	82.72
PRK09607	132	rps11p 30S ribosomal protein S11P; Reviewed	82.51
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	82.51
PRK06849	389	hypothetical protein; Provisional	82.45
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.44
PRK12828	239	short chain dehydrogenase; Provisional	82.41
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	82.26
PRK07060	245	short chain dehydrogenase; Provisional	82.14
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	82.08
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.06
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	82.03
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	82.02
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	81.9
PLN02896	353	cinnamyl-alcohol dehydrogenase	81.82
PRK09496	453	trkA potassium transporter peripheral membrane com	81.75
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	81.71
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	81.48
PRK06138	252	short chain dehydrogenase; Provisional	81.37
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.1
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	80.96
PLN02206	442	UDP-glucuronate decarboxylase	80.79
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	80.78
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.69
PRK06841	255	short chain dehydrogenase; Provisional	80.58
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	80.49
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	80.48
PRK11891	429	aspartate carbamoyltransferase; Provisional	80.43
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	80.4
cd01974	435	Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitro	80.39
PRK07774	250	short chain dehydrogenase; Provisional	80.09
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.05

>PLN02477 glutamate dehydrogenase

Probab=100.00  E-value=5e-130  Score=1014.08  Aligned_cols=410  Identities=83%  Similarity=1.344  Sum_probs=405.5

Q ss_pred             CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHH
Q 012750           47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEV  126 (457)
Q Consensus        47 ~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev  126 (457)
                      +++|++++.+|++|+++++++|++.++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++||
T Consensus         1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ev   80 (410)
T PLN02477          1 MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEV   80 (410)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q 012750          127 NALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF  206 (457)
Q Consensus       127 ~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~  206 (457)
                      ++||+||||||||++||||||||||.+||+++|+.|+|+++|+|+++|.+++||+.|||||||||++++|+||+|+|+++
T Consensus        81 ~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~  160 (410)
T PLN02477         81 NALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKF  160 (410)
T ss_pred             HHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750          207 HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG  286 (457)
Q Consensus       207 ~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  286 (457)
                      .|++|+++||||+.+|||.+|+++||+||+++++++++++|.+++|+||+||||||||+++|++|.++|+|||||||++|
T Consensus       161 ~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G  240 (410)
T PLN02477        161 HGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITG  240 (410)
T ss_pred             hCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHH
Q 012750          287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEAD  366 (457)
Q Consensus       287 ~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~  366 (457)
                      ++|||+|||+++|++++++++++.+|++++.++++++|..+||||+|||++++||++|+++++||+|+||||+|+||+|+
T Consensus       241 ~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~I~egAN~p~t~ea~  320 (410)
T PLN02477        241 AVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAADVKAKFIVEAANHPTDPEAD  320 (410)
T ss_pred             eEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccccEEeeccccccCCHhHHHHcCCcEEEeCCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 012750          367 EILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRV  446 (457)
Q Consensus       367 ~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv  446 (457)
                      ++|++|||+|+||+++||||||+|||||+||+++++|++++|+++|+++|.++|+++++.|+++++++|+|||++|++||
T Consensus       321 ~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rv  400 (410)
T PLN02477        321 EILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCSLRMGAFTLGVNRV  400 (410)
T ss_pred             HHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcc
Q 012750          447 ARATTLRGWE  456 (457)
Q Consensus       447 ~~a~~~rG~~  456 (457)
                      +++|+.|||.
T Consensus       401 ~~a~~~rG~~  410 (410)
T PLN02477        401 ARATVLRGWE  410 (410)
T ss_pred             HHHHHhhCCC
Confidence            9999999984

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-128  Score=985.30  Aligned_cols=409  Identities=49%  Similarity=0.841  Sum_probs=403.0

Q ss_pred             CHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHHH
Q 012750           48 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVN  127 (457)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev~  127 (457)
                      ++|++++.++++|++.++++++++++|++|+|.++|++||+||||++++|+|||||||+++||+|||+||||++|++||+
T Consensus         2 ~~~~~a~~~~~~~~~~~~~~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~   81 (411)
T COG0334           2 NEFEQAVKELEKALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVK   81 (411)
T ss_pred             cHHHHHHHHHHHhhhhccCchhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhh
Q 012750          128 ALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFH  207 (457)
Q Consensus       128 ~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~  207 (457)
                      +||+||||||||++||||||||||++||+.+|+.|+||++|+|+++|.+++||++||||||+||++++|+||+|+|+++.
T Consensus        82 ~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~  161 (411)
T COG0334          82 ALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIV  161 (411)
T ss_pred             HHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750          208 GH-SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG  286 (457)
Q Consensus       208 g~-~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  286 (457)
                      |. .||++||||+++|||.+|+++|||||+++++++++.+|.+++|+||+||||||||+++|++|++.|+|||++||++|
T Consensus       162 g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         162 GNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             CCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            87 59999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHH
Q 012750          287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEAD  366 (457)
Q Consensus       287 ~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~  366 (457)
                      ++|||+|||+++|.+.+++.+++..|++++.++++++|+.+||||+|||++|+||++||++|+||+|+||||+|+|++|+
T Consensus       242 ~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~V~EgAN~P~t~eA~  321 (411)
T COG0334         242 GIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAKIVVEGANGPTTPEAD  321 (411)
T ss_pred             ceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEcccccccccchhhHHHhhhcEEEeccCCCCCHHHH
Confidence            99999999999999877788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 012750          367 EILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRV  446 (457)
Q Consensus       367 ~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv  446 (457)
                      ++|.+|||+|+||+++|||||++|||||+||.++++|++|+|+++|+++|.++++.+++.++++++++|+|||++|++||
T Consensus       322 ~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~~~~r~aA~~~a~~Rv  401 (411)
T COG0334         322 EILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGVDLRTAAYILAFERV  401 (411)
T ss_pred             HHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcc
Q 012750          447 ARATTLRGWE  456 (457)
Q Consensus       447 ~~a~~~rG~~  456 (457)
                      ++||+.|||+
T Consensus       402 a~Am~~~G~~  411 (411)
T COG0334         402 ADAMKARGWY  411 (411)
T ss_pred             HHHHHhcCCC
Confidence            9999999985

>PRK14030 glutamate dehydrogenase; Provisional

Probab=100.00  E-value=4.4e-127  Score=996.36  Aligned_cols=412  Identities=29%  Similarity=0.444  Sum_probs=403.9

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeec
Q 012750           45 IVMNALAATSRNFRNAARILGLDSK-----LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP  119 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~  119 (457)
                      ...+|||+++.++++|+++++++|+     ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||
T Consensus        16 ~e~eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~~lGP~kGGiR~~p   95 (445)
T PRK14030         16 GESEYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRFHP   95 (445)
T ss_pred             CChHHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecCcccCCCCcEEecC
Confidence            5789999999999999999999999     99999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHH
Q 012750          120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI  199 (457)
Q Consensus       120 ~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi  199 (457)
                      +++++|+++||+||||||||++||||||||||.+||+.+|+.|+||++|+|+++|.++|||+.|||||||||++++|+||
T Consensus        96 ~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~  175 (445)
T PRK14030         96 SVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYM  175 (445)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEE
Q 012750          200 LDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVI  279 (457)
Q Consensus       200 ~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVV  279 (457)
                      +|+|+++.+..++++||||+.+|||.+|.++|||||++++++++++.|.+++|+||+||||||||+++|++|.+.|+|||
T Consensus       176 ~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvV  255 (445)
T PRK14030        176 FGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVV  255 (445)
T ss_pred             HHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence            99999999988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeeCCCCCCHHH---HHHhHhhcCCcc-----cCCCCeecCCCcccccccceeeccccCCcccccccccc---
Q 012750          280 AVSDITGAVKNADGIDIHK---LLAHKDKTGSLK-----DFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---  348 (457)
Q Consensus       280 aVsD~~G~iynp~GLDi~~---L~~~~~~~g~~~-----~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i---  348 (457)
                      +|||++|+||||+|||+++   |++++++++++.     +||+++.++++++|+.+||||+|||++|+||++||++|   
T Consensus       256 avSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n~I~~~na~~l~~~  335 (445)
T PRK14030        256 TISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQNELNGEDADKLIKN  335 (445)
T ss_pred             EEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccccCCHHHHHHHHHc
Confidence            9999999999999999888   888998888875     78888999999999999999999999999999999999   


Q ss_pred             cceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012750          349 KAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQ  428 (457)
Q Consensus       349 ~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~  428 (457)
                      +||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.++
T Consensus       336 ~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~~~~~  415 (445)
T PRK14030        336 GVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCVKYGK  415 (445)
T ss_pred             CCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcC--CCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          429 THN--CNLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       429 ~~~--~~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                      +++  +++|+|||++|++||++||+.|||.
T Consensus       416 ~~~~~~~lr~aA~~~a~~rva~a~~~rG~~  445 (445)
T PRK14030        416 EGDGYINYVKGANIAGFMKVAKAMLAQGVV  445 (445)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999  9999999999999999999999984

>PRK09414 glutamate dehydrogenase; Provisional

Probab=100.00  E-value=7.8e-124  Score=974.80  Aligned_cols=412  Identities=31%  Similarity=0.503  Sum_probs=402.9

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeec
Q 012750           45 IVMNALAATSRNFRNAARILGLDSK-----LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP  119 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~  119 (457)
                      ...++|++++.+|++|+++++++|+     ++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||
T Consensus        20 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~~~~GPakGG~R~~p   99 (445)
T PRK09414         20 GQPEFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFNSAIGPYKGGLRFHP   99 (445)
T ss_pred             CCchHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEecCCCcCCCCceeecC
Confidence            5778999999999999999999999     99999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHH
Q 012750          120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI  199 (457)
Q Consensus       120 ~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi  199 (457)
                      +++.+|+.+||+||||||||++||||||||||.+||+++|+.|+||++|+|+++|.+++||+.|||||||||++++|+||
T Consensus       100 ~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~  179 (445)
T PRK09414        100 SVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYL  179 (445)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEE
Q 012750          200 LDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVI  279 (457)
Q Consensus       200 ~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVV  279 (457)
                      +|+|+++.++..+++||||+.+|||.+|.++||+||++++++++++.+.+++|+||+||||||||+++|++|.+.|+|||
T Consensus       180 ~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVV  259 (445)
T PRK09414        180 FGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVV  259 (445)
T ss_pred             HHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence            99999999987799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeeCCCCCCHHHHHHhHhhc-CCcccCC---CCeecCCCcccccccceeeccccCCcccccccccc---cceE
Q 012750          280 AVSDITGAVKNADGIDIHKLLAHKDKT-GSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KAKF  352 (457)
Q Consensus       280 aVsD~~G~iynp~GLDi~~L~~~~~~~-g~~~~~~---~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i---~aki  352 (457)
                      +|||++|++|||+|||+++|+++++++ +++.+|+   +++.++++++++.+||||||||++|+||++|+.++   +||+
T Consensus       260 avsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~aki  339 (445)
T PRK09414        260 TCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSVPCDIALPCATQNELDEEDAKTLIANGVKA  339 (445)
T ss_pred             EEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccccCCcEEEecCCcCcCCHHHHHHHHHcCCeE
Confidence            999999999999999999999999886 5788887   56778999999999999999999999999999999   9999


Q ss_pred             EEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 012750          353 IIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHN-  431 (457)
Q Consensus       353 IvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~-  431 (457)
                      |+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||.++++|++++|+++|+++|.++|+++++.+++++ 
T Consensus       340 IvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~~m~~~~~~~~~~~~~~~~  419 (445)
T PRK09414        340 VAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHHACVETAEEYGK  419 (445)
T ss_pred             EEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -CCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          432 -CNLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       432 -~~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                       +++|+|||++|++||++||+.|||+
T Consensus       420 ~~~~r~aA~~~a~~rv~~a~~~rG~~  445 (445)
T PRK09414        420 PGNYVAGANIAGFVKVADAMLAQGVI  445 (445)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence             9999999999999999999999985

>PRK14031 glutamate dehydrogenase; Provisional

Probab=100.00  E-value=4.8e-120  Score=944.29  Aligned_cols=412  Identities=30%  Similarity=0.473  Sum_probs=395.6

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCChHH-----HHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeec
Q 012750           45 IVMNALAATSRNFRNAARILGLDSKL-----ERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP  119 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~  119 (457)
                      ...+|+|.++..+..-..+++-+|++     +++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||
T Consensus        16 ~~~e~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~~lGP~kGGiR~~p   95 (444)
T PRK14031         16 NEPEYHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHA   95 (444)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecCCCcCCCCCeeecC
Confidence            46678888888888888888877765     5599999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHH
Q 012750          120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI  199 (457)
Q Consensus       120 ~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi  199 (457)
                      +++++|+++||+||||||||++||||||||||.+||+++|..|+||++|+|+++|.++|||+.||||||+||++++|+||
T Consensus        96 ~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i  175 (444)
T PRK14031         96 SVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFM  175 (444)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEE
Q 012750          200 LDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVI  279 (457)
Q Consensus       200 ~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVV  279 (457)
                      +|+|+++.++.+|++||||+.+|||.+|.++|||||++++++++++.|.+|+|+||+||||||||+++|++|.+.|+|||
T Consensus       176 ~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVV  255 (444)
T PRK14031        176 FGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVV  255 (444)
T ss_pred             HHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence            99999999988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeeCCCCCCHHHHH---HhHhh-cCCcccCC---CCeecCCCcccccccceeeccccCCcccccccccccce-
Q 012750          280 AVSDITGAVKNADGIDIHKLL---AHKDK-TGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAK-  351 (457)
Q Consensus       280 aVsD~~G~iynp~GLDi~~L~---~~~~~-~g~~~~~~---~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~ak-  351 (457)
                      +|||++|++|||+|||+++|.   +++.+ ++++.+|+   +++.++++++|+.+||||+|||++++||++||++++|+ 
T Consensus       256 aVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g  335 (444)
T PRK14031        256 TMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQNELNGDDARQLVANG  335 (444)
T ss_pred             EEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeecccccccCHHHHHHHHhcC
Confidence            999999999999999999986   55554 56787776   56788999999999999999999999999999999986 


Q ss_pred             --EEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012750          352 --FIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQT  429 (457)
Q Consensus       352 --iIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~  429 (457)
                        +|+||||+|+||+|+++|++|||+++||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.+++
T Consensus       336 ~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~m~~~~~~v~~~~~~  415 (444)
T PRK14031        336 VIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSIMKNIHEACVQYGTE  415 (444)
T ss_pred             CeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c--CCCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          430 H--NCNLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       430 ~--~~~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                      +  ++++|+|||++|++||++||+.|||.
T Consensus       416 ~~~~~~~r~aA~~~a~~rva~a~~~~G~~  444 (444)
T PRK14031        416 ADGYVNYVKGANVAGFMKVAKAMMAQGIV  444 (444)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            8  69999999999999999999999984

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-119  Score=936.69  Aligned_cols=411  Identities=30%  Similarity=0.484  Sum_probs=386.8

Q ss_pred             cCCHHHHHHHHHHHHHHHcCCCh---HHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCC
Q 012750           46 VMNALAATSRNFRNAARILGLDS---KLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVD  122 (457)
Q Consensus        46 ~~~~~~~~~~~~~~a~~~~~~~~---~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~  122 (457)
                      ...|+|.+...++.-..+++-+|   .++++|++|+|+|+|++||+||||++++|+|||||||+++||+||||||||++|
T Consensus        28 ~~ef~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~alGP~kGGlRfhp~v~  107 (454)
T PTZ00079         28 QPEFLQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNSALGPYKGGLRFHPSVN  107 (454)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcCCCCCCCCCEEeeCCCC
Confidence            33445555554444444444444   477899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHH
Q 012750          123 PDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDE  202 (457)
Q Consensus       123 ~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~  202 (457)
                      ++|+++||++|||||||++||+|||||||.+||+.+|+.|++|+||+|+++|.++|||+.||||||+||++++|+||+++
T Consensus       108 ~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~  187 (454)
T PTZ00079        108 LSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQ  187 (454)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          203 YSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       203 ~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      |+++.+..|+++||||+.+|||.+|.++|||||++++++++++.+.+++|+||+||||||||+++|++|.+.|+|||+||
T Consensus       188 y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavS  267 (454)
T PTZ00079        188 YKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMS  267 (454)
T ss_pred             HHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            99999988999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeCCCCCCHHHH---HHhHhhc-CCcccCC----CCeecCCCcccccccceeeccccCCcccccccccc---cce
Q 012750          283 DITGAVKNADGIDIHKL---LAHKDKT-GSLKDFD----GGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KAK  351 (457)
Q Consensus       283 D~~G~iynp~GLDi~~L---~~~~~~~-g~~~~~~----~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i---~ak  351 (457)
                      |++|++|||+|||+++|   .++++.+ +++.+|+    +++.++++++|+.+||||+|||++|+||.+||+++   +||
T Consensus       268 D~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak  347 (454)
T PTZ00079        268 DSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQNEINLEDAKLLIKNGCK  347 (454)
T ss_pred             cCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccccccCCHHHHHHHHHcCCe
Confidence            99999999999999988   6666654 6777765    57788999999999999999999999999999987   999


Q ss_pred             EEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 012750          352 FIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTH-  430 (457)
Q Consensus       352 iIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~-  430 (457)
                      +|+||||+|+|++|+++|++|||+|+||+++|||||++|||||+||.++++|++|+|+++|+++|.++|+++++.++++ 
T Consensus       348 ~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~~M~~~~~~~~~~a~~~~  427 (454)
T PTZ00079        348 LVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEACVKYAEKYG  427 (454)
T ss_pred             EEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          431 -NCNLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       431 -~~~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                       ++++|+|||+.|+.||++||..|||+
T Consensus       428 ~~~~~r~~A~i~~~~rva~Am~~~G~~  454 (454)
T PTZ00079        428 GKSDLVAGANIAGFLKVADSMIEQGCV  454 (454)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence             58999999999999999999999985

>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=6.6e-103  Score=803.68  Aligned_cols=387  Identities=52%  Similarity=0.824  Sum_probs=364.1

Q ss_pred             HHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 012750           69 KLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAK  148 (457)
Q Consensus        69 ~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev~~LA~~Mt~K~Al~~lP~GGaK  148 (457)
                      .++.+|.-|+|+++|++||.+|+|+.+++.||||||+.+|||+||||||||+++++++++||+.||||||+.++|+||||
T Consensus        66 ~Il~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaK  145 (514)
T KOG2250|consen   66 AILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAK  145 (514)
T ss_pred             hhhhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCc
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCC
Q 012750          149 GGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRE  228 (457)
Q Consensus       149 GgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~  228 (457)
                      |||.+||+.+|..|+||+||+|+++|.+++||++|+|+|||||++++|.|++++|++.+|++++++||||+.+|||.+|.
T Consensus       146 GGi~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~  225 (514)
T KOG2250|consen  146 GGILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRY  225 (514)
T ss_pred             CccccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhC--CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhc
Q 012750          229 AATGRGVVYATEALLAEHG--QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT  306 (457)
Q Consensus       229 ~aTg~Gv~~~~~~~l~~~g--~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~  306 (457)
                      +||||||+++++.++++++  .+++|+||+||||||||++++++|++.|+|+|+|+|++|++|||+|||+++|.++++++
T Consensus       226 ~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k  305 (514)
T KOG2250|consen  226 EATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEK  305 (514)
T ss_pred             cccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhh
Confidence            9999999999999999888  56999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCeecCCC-------cccccccceeeccccCCcccccccccccce---EEEecCCCCCCHHHHHHHHhCCCeE
Q 012750          307 GSLKDFDGGDSMEPS-------ELLAHECDVLIPCALGGVLKRENAADVKAK---FIIEAANHPTDPEADEILSKRGVTI  376 (457)
Q Consensus       307 g~~~~~~~~~~i~~~-------ell~~~~DIliPaA~~~~It~~na~~i~ak---iIvEgAN~p~t~~a~~iL~~rGI~v  376 (457)
                      +++.+|+++....+.       .+|..+||||+|||.+|+||.+||.+++++   +|+||||+|+||+|+++|+++||++
T Consensus       306 ~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~i  385 (514)
T KOG2250|consen  306 KTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAGVLI  385 (514)
T ss_pred             ccccccccccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeEE
Confidence            999999987754443       677889999999999999999999999666   9999999999999999999999999


Q ss_pred             ecccccccCCceehhHHHhhhcc-------cCCCCHHHHHHHHHHHHHHHHHHH----HHHHHhcC--------CCHHHH
Q 012750          377 LPDIYANSGGVTVSYFEWVQNIQ-------GFMWEEDKVNNELRRYMIRAFHNI----KGMCQTHN--------CNLRMG  437 (457)
Q Consensus       377 iPD~laNaGGVi~S~~E~~qn~~-------~~~w~~e~v~~~l~~~m~~~~~~v----~~~a~~~~--------~~~r~a  437 (457)
                      +||..||+|||++|||||+||++       .+.|++|.|...|.+.|...+...    ++.+++++        .++...
T Consensus       386 ~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~g  465 (514)
T KOG2250|consen  386 IPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGKANLEPAAEFKDRIQGTSEKDLVHG  465 (514)
T ss_pred             echhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccCcccchHHHhhhhhcCCCchHHhhh
Confidence            99999999999999999999999       689999999999999777766665    54443322        378888


Q ss_pred             HHHHHHHHHHHHHHHcCc
Q 012750          438 AFTLGVNRVARATTLRGW  455 (457)
Q Consensus       438 A~~~A~~rv~~a~~~rG~  455 (457)
                      |.+.++.|++++|..+|+
T Consensus       466 al~~~~~kva~ai~~~g~  483 (514)
T KOG2250|consen  466 ALIATFNKVARAITDQGD  483 (514)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999999999998888875

>PTZ00324 glutamate dehydrogenase 2; Provisional

Probab=100.00  E-value=1e-86  Score=736.93  Aligned_cols=404  Identities=22%  Similarity=0.256  Sum_probs=370.6

Q ss_pred             HHhhhcCC-CCCcchhhHHHHHHhh-hcCCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEE
Q 012750           21 HILLFKSP-ISGFSSLLTCFESFRI-IVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYV   98 (457)
Q Consensus        21 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~   98 (457)
                      ..+...+. .+++++||+|+..+.+ .+||||+..     +.+-.++++|+.++.|+.|++.+.+.+|+    |  +.|+
T Consensus       419 ~~~~~~v~~~~~~~Ilr~~~~~~~~~lrTNff~~~-----k~alsFrldp~~l~~l~~P~~p~~v~fv~----G--~~f~  487 (1002)
T PTZ00324        419 ARLKEDIRNELDRTIFSAFLSFNEHILKTNFYKTE-----KTALAFRLDPSFLSELEYPRVPYGVFLVA----G--AQFR  487 (1002)
T ss_pred             HHHHhhcCChhHHHHHHHHHHHHHHHhccccccCC-----CceEEEeCCHHHHhhcCCCCceEEEEEEE----C--CcEE
Confidence            33334555 8899999999988888 799999853     33344999999999999999999999999    4  8999


Q ss_pred             EEEEEeeccCCCCCCCeeeecC-----------CCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCH---HHHH
Q 012750           99 GFRVQHDNARGPMKGGIRYHPE-----------VDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSN---SELE  164 (457)
Q Consensus        99 G~rv~h~~a~GPakGGiR~~~~-----------~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~---~ele  164 (457)
                      |||+||+.+   ++|||||||.           ++.+|+++||+|||||||  +||+|||||||++||+.++.   .|+|
T Consensus       488 G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~tqt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~e  562 (1002)
T PTZ00324        488 GFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLASTQLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQ  562 (1002)
T ss_pred             EEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHHHHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHH
Confidence            999999887   8999999998           789999999999999997  99999999999999998887   8899


Q ss_pred             HHHHHHHHHHhhccCCCCcc-----------cCCCCCCCHHHHHHHHHHhhhhhCCC--CceecCcccCCCCCCCCC-cc
Q 012750          165 RLTRVFTQKIHDLIGIHTDI-----------PAPDMGTNAQTMAWILDEYSKFHGHS--PAVVTGKPIDLGGSLGRE-AA  230 (457)
Q Consensus       165 ~~~r~f~~~l~~~iG~~~di-----------papDvgT~~~~m~wi~d~~~~~~g~~--~~~~tGkp~~~GGs~gr~-~a  230 (457)
                      +++|+|+++|.+++||..||           ||||+||+++.|+|| ++|++.+|++  ++++||||..+||+.|+. ++
T Consensus       563 r~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~mdwa-~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~  641 (1002)
T PTZ00324        563 HAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMDWA-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGM  641 (1002)
T ss_pred             HHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHHHH-HHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcc
Confidence            99999999999999999998           999999999999999 8999999985  899999999999999998 99


Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEe--cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQG--FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS  308 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqG--fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~  308 (457)
                      ||+||+++++++++++|+++++.||++||  |||||++.++++.   +|||||+|++|++|||+|||+++|.++++++++
T Consensus       642 T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s  718 (1002)
T PTZ00324        642 TTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLP  718 (1002)
T ss_pred             cchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999  9999999998864   799999999999999999999999999999889


Q ss_pred             cccCC---------------------CCeec-----CCCcc---cccccceeecccc-CCccccccc--------ccccc
Q 012750          309 LKDFD---------------------GGDSM-----EPSEL---LAHECDVLIPCAL-GGVLKRENA--------ADVKA  350 (457)
Q Consensus       309 ~~~~~---------------------~~~~i-----~~~el---l~~~~DIliPaA~-~~~It~~na--------~~i~a  350 (457)
                      +.+|+                     +++.+     .++++   +..+|||||||+. +++||++|+        .+++|
T Consensus       719 ~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~ira  798 (1002)
T PTZ00324        719 AREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRF  798 (1002)
T ss_pred             cccCchhhccCCCceeecccccccCCccceeccccccchhhccccCCCccEEEECCCCcCccCHHHHhhhhhccccCcee
Confidence            98653                     22222     23444   4789999999998 999999999        78999


Q ss_pred             eEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcc------------------cCCCC--HHHHHH
Q 012750          351 KFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQ------------------GFMWE--EDKVNN  410 (457)
Q Consensus       351 kiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~------------------~~~w~--~e~v~~  410 (457)
                      |+||||||+|+||+|+.+|++|||+++||+++|+|||+||||||+||++                  +.+|+  .++|.+
T Consensus       799 kvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~~Evl~~l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~  878 (1002)
T PTZ00324        799 KIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSSLEVLAALALSDEEFAEHMCVKDATDAPEFYKKYVKEILD  878 (1002)
T ss_pred             EEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeHHHHHhccccchhhhhhhhcccccCCccchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998                  78899  899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 012750          411 ELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVN  444 (457)
Q Consensus       411 ~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~  444 (457)
                      +|+++|..+|+.||+.+++.++++|+||..+..+
T Consensus       879 ~L~~~a~~ef~~i~~~~~~~~~~~r~asd~lS~~  912 (1002)
T PTZ00324        879 RIEENARLEFNAIWREELRTGKPRCLLADVLSRK  912 (1002)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999987643

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=100.00  E-value=8.2e-72  Score=546.37  Aligned_cols=241  Identities=32%  Similarity=0.480  Sum_probs=231.4

Q ss_pred             cCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCC
Q 012750          215 TGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGI  294 (457)
Q Consensus       215 tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GL  294 (457)
                      ||||+.+|||.||+++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|++|||+||
T Consensus         1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl   80 (254)
T cd05313           1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF   80 (254)
T ss_pred             CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHH---HHhHhhcCC-cccCC----CCeecCCCcccccccceeeccccCCcccccccccc---cceEEEecCCCCCCH
Q 012750          295 DIHKL---LAHKDKTGS-LKDFD----GGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KAKFIIEAANHPTDP  363 (457)
Q Consensus       295 Di~~L---~~~~~~~g~-~~~~~----~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i---~akiIvEgAN~p~t~  363 (457)
                      |+++|   .++++++++ +.+|+    +++.++++++|+.+||||+|||++++||++|++++   +||+|+||||+|+||
T Consensus        81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~  160 (254)
T cd05313          81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA  160 (254)
T ss_pred             CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCH
Confidence            99998   556666665 45553    67889999999999999999999999999999999   899999999999999


Q ss_pred             HHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Q 012750          364 EADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHN--CNLRMGAFTL  441 (457)
Q Consensus       364 ~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~  441 (457)
                      +|+++|++|||+|+||+++|+||||+|||||+||+++++|++|+|+++|+++|.++|+++++.+++++  ++||+|||++
T Consensus       161 ~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~~  240 (254)
T cd05313         161 EAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGDPPDLVAGANIA  240 (254)
T ss_pred             HHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  8999999999


Q ss_pred             HHHHHHHHHHHcCc
Q 012750          442 GVNRVARATTLRGW  455 (457)
Q Consensus       442 A~~rv~~a~~~rG~  455 (457)
                      |++||+++|+.||+
T Consensus       241 a~~rv~~a~~~rG~  254 (254)
T cd05313         241 GFLKVADAMLAQGV  254 (254)
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999999995

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=100.00  E-value=2.4e-64  Score=492.85  Aligned_cols=233  Identities=49%  Similarity=0.845  Sum_probs=223.7

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHH
Q 012750          222 GGSLGREAATGRGVVYATEALLAEHGQA-IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLL  300 (457)
Q Consensus       222 GGs~gr~~aTg~Gv~~~~~~~l~~~g~~-l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~  300 (457)
                      |||.+|.++|||||++++++++++++.+ ++|+||+||||||||+++|++|++.|++||+|||++|++|||+|||+++|+
T Consensus         1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~   80 (244)
T PF00208_consen    1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL   80 (244)
T ss_dssp             TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred             CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence            7999999999999999999999998887 999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhcCC-cccCC-----CCeecCCC-cccccccceeeccccCCcccccccc-ccc--ceEEEecCCCCCCHHHHHHHH
Q 012750          301 AHKDKTGS-LKDFD-----GGDSMEPS-ELLAHECDVLIPCALGGVLKRENAA-DVK--AKFIIEAANHPTDPEADEILS  370 (457)
Q Consensus       301 ~~~~~~g~-~~~~~-----~~~~i~~~-ell~~~~DIliPaA~~~~It~~na~-~i~--akiIvEgAN~p~t~~a~~iL~  370 (457)
                      +++++.+. +..|+     +.+.++++ ++|+.+||||+|||++++||++|++ .++  ||+||||||+|+||+|+++|+
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L~  160 (244)
T PF00208_consen   81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEILR  160 (244)
T ss_dssp             HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHHH
T ss_pred             HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHHH
Confidence            99999888 98887     56778874 9999999999999999999999999 999  999999999999999999999


Q ss_pred             hCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 012750          371 KRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARAT  450 (457)
Q Consensus       371 ~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~  450 (457)
                      +|||+|+||+++|+||||+||+||+||+++++|+++++.++++++|.+++++|++.|+++++++|+|||++|++||+++|
T Consensus       161 ~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~~~aA~~~A~~rv~~a~  240 (244)
T PF00208_consen  161 ERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGISLRQAAYILAFERVAAAM  240 (244)
T ss_dssp             HTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred             HCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcC
Q 012750          451 TLRG  454 (457)
Q Consensus       451 ~~rG  454 (457)
                      +.||
T Consensus       241 ~~rG  244 (244)
T PF00208_consen  241 KLRG  244 (244)
T ss_dssp             HHTT
T ss_pred             HhcC
Confidence            9998

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=100.00  E-value=3.3e-61  Score=466.32  Aligned_cols=226  Identities=53%  Similarity=0.873  Sum_probs=221.9

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHH
Q 012750          222 GGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA  301 (457)
Q Consensus       222 GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~  301 (457)
                      |||.+|+++|||||++++++++++++.+++++||+||||||||++++++|.++|++||+|+|++|++|||+|||+++|++
T Consensus         1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~   80 (227)
T cd01076           1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA   80 (227)
T ss_pred             CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence            79999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 012750          302 HKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIY  381 (457)
Q Consensus       302 ~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~l  381 (457)
                      ++++++++.+|++++.++++++++.+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||++
T Consensus        81 ~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~~  160 (227)
T cd01076          81 YKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDIL  160 (227)
T ss_pred             HHHhcCCcccCCCceecCCccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChHH
Confidence            99999999999988888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 012750          382 ANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVA  447 (457)
Q Consensus       382 aNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~  447 (457)
                      +|+||||+||+||+||++++.|++++|.+++++.|.+++.++++.++++++++|++||.+|++||.
T Consensus       161 aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~~~~~aA~~~a~~rl~  226 (227)
T cd01076         161 ANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVA  226 (227)
T ss_pred             hcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999986

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=100.00  E-value=5.2e-60  Score=455.06  Aligned_cols=217  Identities=39%  Similarity=0.639  Sum_probs=211.7

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      ||||||++++++++++++.+++|+||+||||||||+++|++|.++|+++|+|||++|++||| |||++++++++++.+++
T Consensus         1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~   79 (217)
T cd05211           1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGS   79 (217)
T ss_pred             CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCc
Confidence            69999999999999999989999999999999999999999999999999999999999999 99999999999888889


Q ss_pred             ccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCcee
Q 012750          310 KDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTV  389 (457)
Q Consensus       310 ~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~  389 (457)
                      ..|+.++.+++++++..+||||+|||++|+||++|+++++||+|+||||+|+|++++++|++|||+|+||+++|+|||++
T Consensus        80 ~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~NaGGvi~  159 (217)
T cd05211          80 ARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIV  159 (217)
T ss_pred             cccCcccccCcccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhcCCCeEe
Confidence            88887777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 012750          390 SYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVA  447 (457)
Q Consensus       390 S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~  447 (457)
                      |||||+||.++++|++++|.++++++|.++++++++.++++++++|+|||++|++||+
T Consensus       160 s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rva  217 (217)
T cd05211         160 SYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA  217 (217)
T ss_pred             EHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999984

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=100.00  E-value=4.1e-47  Score=338.53  Aligned_cols=130  Identities=53%  Similarity=0.890  Sum_probs=124.5

Q ss_pred             CCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCC
Q 012750           77 PFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPK  156 (457)
Q Consensus        77 p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~  156 (457)
                      |+|+++|++||+||||+.+.|+|||||||+++||+||||||||++|.+|+++||++||||||++++|||||||||.+||+
T Consensus         1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~   80 (131)
T PF02812_consen    1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK   80 (131)
T ss_dssp             -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred             CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q 012750          157 ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF  206 (457)
Q Consensus       157 ~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~  206 (457)
                      ++|..|+|+++|+|+++|.+++|+..|||||||||+++||+||+++|+++
T Consensus        81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~  130 (131)
T PF02812_consen   81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRV  130 (131)
T ss_dssp             GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence            99999999999999999999999999999999999999999999999864

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=100.00  E-value=2.4e-43  Score=335.38  Aligned_cols=195  Identities=28%  Similarity=0.419  Sum_probs=177.7

Q ss_pred             CcchHHHHHHHHHHHHHHh--CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh
Q 012750          228 EAATGRGVVYATEALLAEH--GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK  305 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~--g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~  305 (457)
                      +.+||+||+++++++++++  +.+++|++|+|||||+||+++++.|.+.|++|+ ++|.+          .+++.++++.
T Consensus         2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~~~~~~~   70 (200)
T cd01075           2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAVARAAEL   70 (200)
T ss_pred             CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHH
Confidence            5689999999999999976  778999999999999999999999999999999 88864          4555555543


Q ss_pred             cCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCC-HHHHHHHHhCCCeEeccccccc
Q 012750          306 TGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTD-PEADEILSKRGVTILPDIYANS  384 (457)
Q Consensus       306 ~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t-~~a~~iL~~rGI~viPD~laNa  384 (457)
                            | +.+.+++++++..+|||++|||++++||++|+++++||+|+||||+|+| ++++++|+++||+|+||+++|+
T Consensus        71 ------~-g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~Na  143 (200)
T cd01075          71 ------F-GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNA  143 (200)
T ss_pred             ------c-CCEEEcchhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeC
Confidence                  2 3556777889988999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             CCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 012750          385 GGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVA  447 (457)
Q Consensus       385 GGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~  447 (457)
                      |||++||+||+|+.      +++++++++.+ .+++.++++.+++++++||+|||.+|++||.
T Consensus       144 GGv~~~~~e~~~~~------~~~~~~~~~~~-~~~~~~v~~~a~~~~~~~~~aA~~~a~~r~~  199 (200)
T cd01075         144 GGLINVADELYGGN------EARVLAKVEAI-YDTLLEIFAQAKQDGITTLEAADRMAEERIA  199 (200)
T ss_pred             cCceeehhHHhCCc------HHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence            99999999999863      67899999985 8999999999999999999999999999985

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase

Probab=100.00  E-value=2.3e-39  Score=374.83  Aligned_cols=420  Identities=22%  Similarity=0.223  Sum_probs=324.8

Q ss_pred             hHHHHHHHHHHhhhcCC-CCCcchhhHHHHHHhh-hcCCHHHHHH-HHHHHHHHHcCCChHHHHhhcC--CCeEEEEEEE
Q 012750           12 SQKLIHSFIHILLFKSP-ISGFSSLLTCFESFRI-IVMNALAATS-RNFRNAARILGLDSKLERSLLI--PFREIKVECT   86 (457)
Q Consensus        12 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~L~~--p~r~~~v~~p   86 (457)
                      .++.++..|...|.++. +|++++||+|...+.+ .+||||+... .+-+.+. .|+++|..++.+..  |.++|.|+-|
T Consensus       643 ~~~~~~~~i~~~l~~V~~l~~drILr~~~~~i~atlRTNff~~~~~g~~k~~l-sfKldp~~l~~~p~P~P~~eifV~s~  721 (1528)
T PF05088_consen  643 AQEELEEEIEEALDEVASLDEDRILRRFLNLIEATLRTNFFQPDEDGQPKPAL-SFKLDPSFLPDLPEPRPYFEIFVYSP  721 (1528)
T ss_pred             HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhcCcccccCccCCCCCeE-EEEEcHHHcCCCCCCCCcEEEEEECC
Confidence            56678999999999998 9999999999988888 7999999742 2223333 48999999988775  7778877754


Q ss_pred             EEcCCCcEEEEEEEEEEe-eccCCCCCCCeeeecCCC--HHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCC--CH-
Q 012750           87 IPKDDGSLVSYVGFRVQH-DNARGPMKGGIRYHPEVD--PDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKEL--SN-  160 (457)
Q Consensus        87 v~~d~G~~~~f~G~rv~h-~~a~GPakGGiR~~~~~~--~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~--s~-  160 (457)
                               -|+|+|+++ ..+|    ||+||+....  .+||+.|+++|+.||+  .||-||||||++++....  +. 
T Consensus       722 ---------~~eGvHLR~g~VAR----GGlRwSdR~eDfRtEvlgL~kaQ~vKNa--vIvp~GsKGgfv~k~~~~~~~r~  786 (1528)
T PF05088_consen  722 ---------RFEGVHLRFGDVAR----GGLRWSDRPEDFRTEVLGLVKAQQVKNA--VIVPVGSKGGFVVKQLPDPADRD  786 (1528)
T ss_pred             ---------ceEEEEcccccccc----CcccccCCHHHHHHHHHHHHHHHHhcCC--cccCCCCceeEEecCCCCCCCHH
Confidence                     469999998 5666    9999975432  5799999999999995  557799999999864432  32 


Q ss_pred             ---HHHHHHHHHHHHHHhhcc---------CC------CCc----ccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcc
Q 012750          161 ---SELERLTRVFTQKIHDLI---------GI------HTD----IPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKP  218 (457)
Q Consensus       161 ---~ele~~~r~f~~~l~~~i---------G~------~~d----ipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp  218 (457)
                         .|...+++.|+++|.++.         .|      +.|    |.|+|.||..  +.=++.+.+.-    .|+|.|+.
T Consensus       787 ~~~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTAt--fSD~AN~ia~~----~gfWLgDA  860 (1528)
T PF05088_consen  787 AWQAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTAT--FSDIANEIAAE----YGFWLGDA  860 (1528)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcch--HHHHHHHHHHH----cCCCcchh
Confidence               345678899999998773         22      111    6799999962  22122222222    35899999


Q ss_pred             cCCCCCCCCC----cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHH--HHHHHCCCEEEEEECCCCeeeCCC
Q 012750          219 IDLGGSLGRE----AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAA--RLIHERGGKVIAVSDITGAVKNAD  292 (457)
Q Consensus       219 ~~~GGs~gr~----~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a--~~L~~~GakVVaVsD~~G~iynp~  292 (457)
                      +.+|||.|++    +.|++|.|.+++.+++++|+++....|.|+|.|++++.+.  .+|..+..|+||..|+.+.+.||+
T Consensus       861 FASGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~  940 (1528)
T PF05088_consen  861 FASGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPD  940 (1528)
T ss_pred             hhcCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchhcccceeEEEecCcceeecCcC
Confidence            9999999987    7999999999999999999999999999999999999998  489999999999999999999999


Q ss_pred             CCCHHH----HHHhHhh-cCCcccCC------------------------------CCeecCCCc----ccccccceeec
Q 012750          293 GIDIHK----LLAHKDK-TGSLKDFD------------------------------GGDSMEPSE----LLAHECDVLIP  333 (457)
Q Consensus       293 GLDi~~----L~~~~~~-~g~~~~~~------------------------------~~~~i~~~e----ll~~~~DIliP  333 (457)
                      . |++.    -+++++- +.+|++|.                              ....++|+|    +|..|+|+|+-
T Consensus       941 P-D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwn 1019 (1528)
T PF05088_consen  941 P-DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWN 1019 (1528)
T ss_pred             C-ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCCccCHHHHHHHHhcCccceEec
Confidence            7 5443    3334442 33677774                              111344455    56889999999


Q ss_pred             cccCCccccc-----------------ccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhh
Q 012750          334 CALGGVLKRE-----------------NAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ  396 (457)
Q Consensus       334 aA~~~~It~~-----------------na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~q  396 (457)
                      ..++..|-..                 |+.+++||+|+||+|..+|+.++-.+..+|..+..|++.||+||-||.+|..-
T Consensus      1020 GGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEVNi 1099 (1528)
T PF05088_consen 1020 GGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNLGLTQRGRIEYALNGGRINTDAIDNSAGVDCSDHEVNI 1099 (1528)
T ss_pred             CCccceEecCCCcccccccccCcceeechHHceEEEEecccccccchHHHHHHHHcCCccchhhhcccCCCcCccchhhH
Confidence            9998766432                 56779999999999999999999999999999999999999999999999865


Q ss_pred             hc------ccCCCCHHHHHHHHHHHHHHHHHHHHHHH---Hhc--CC-CHHHHHHHHHHHHHHHHHHHcCc
Q 012750          397 NI------QGFMWEEDKVNNELRRYMIRAFHNIKGMC---QTH--NC-NLRMGAFTLGVNRVARATTLRGW  455 (457)
Q Consensus       397 n~------~~~~w~~e~v~~~l~~~m~~~~~~v~~~a---~~~--~~-~~r~aA~~~A~~rv~~a~~~rG~  455 (457)
                      .+      .....+.++-++.|++ |++.+.+++-.-   |..  .+ ..+...+.-...|+.+.++.+|.
T Consensus      1100 KIll~~~~~~g~lt~~~Rn~lL~~-mtdeV~~lVL~~N~~Q~~alsl~~~~~~~~~~~~~r~~~~Le~~g~ 1169 (1528)
T PF05088_consen 1100 KILLNSLVRAGDLTRKERNKLLAS-MTDEVAELVLRDNYRQTLALSLAERRAAERLEEHQRLIERLEREGR 1169 (1528)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCC
Confidence            43      2334588999999998 888887654322   221  22 23344556667788888888774

>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-39  Score=362.98  Aligned_cols=391  Identities=22%  Similarity=0.221  Sum_probs=299.8

Q ss_pred             hHHHHHHHHHHhhhcCC-CCCcchhhHHHHHHhh-hcCCHHHHH-HHHHHHHHHHcCCChHHHHhhcC--CCeEEEEEEE
Q 012750           12 SQKLIHSFIHILLFKSP-ISGFSSLLTCFESFRI-IVMNALAAT-SRNFRNAARILGLDSKLERSLLI--PFREIKVECT   86 (457)
Q Consensus        12 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~L~~--p~r~~~v~~p   86 (457)
                      +++.+...|...|..++ +|+||+||++...+.+ .+||+||.- ..+-+.+.+ |+++|..++-|..  |.++|.|+-|
T Consensus       705 ~~~al~~~i~~al~~v~~ld~DrILR~~~~~i~atLRTNyfq~~~~~~~k~~lS-FK~dps~i~~lp~P~Py~eIFVyg~  783 (1592)
T COG2902         705 AAEALLDKIEEALDAVPSLDEDRILRRFVNLVKATLRTNYFQLDGHGTPKVALS-FKFDPSLIDELPYPRPYREIFVYGP  783 (1592)
T ss_pred             hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhceeeecCCCCcceeEE-EEeChhhcCCCCCCCcceEEEEEcC
Confidence            56778888888899999 9999999999988888 799999922 333344444 9999999998875  7899999854


Q ss_pred             EEcCCCcEEEEEEEEEEe-eccCCCCCCCeeeecCCC---HHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCC--CCCCH
Q 012750           87 IPKDDGSLVSYVGFRVQH-DNARGPMKGGIRYHPEVD---PDEVNALAQLMTWKTAVADIPYGGAKGGIGCSP--KELSN  160 (457)
Q Consensus        87 v~~d~G~~~~f~G~rv~h-~~a~GPakGGiR~~~~~~---~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP--~~~s~  160 (457)
                               -|+|+|.++ ..+|    ||+||+ +..   .+|++.|++.|+.|||+  ||-+|||||+.+.+  ..-+.
T Consensus       784 ---------~vEGvHLRFg~VAR----GGLRws-DR~~D~rtEvlgLvKAQqvKNav--IvpvGAKGgf~~k~lp~g~~R  847 (1592)
T COG2902         784 ---------EVEGVHLRFGPVAR----GGLRWS-DRNQDFRTEVLGLVKAQQVKNAV--IVPVGAKGGFLLKRLPTGGDR  847 (1592)
T ss_pred             ---------cceEEEeecccccc----cccccc-ccchhHHHHHHHHHHHHHhcCCc--ccccCCcceEecccCCCCCch
Confidence                     569999998 4455    999999 444   57999999999999965  45689999999875  33344


Q ss_pred             HH----HHHHHHHHHHHHhhcc-----C----C------CCc----ccCCCCCCCH-HHHHHHHHHhhhhhCCCCceecC
Q 012750          161 SE----LERLTRVFTQKIHDLI-----G----I------HTD----IPAPDMGTNA-QTMAWILDEYSKFHGHSPAVVTG  216 (457)
Q Consensus       161 ~e----le~~~r~f~~~l~~~i-----G----~------~~d----ipapDvgT~~-~~m~wi~d~~~~~~g~~~~~~tG  216 (457)
                      .|    -.++++.|++.|.+++     +    |      +.|    +.|||.||.. .|.+-.   .++    ..+|+-|
T Consensus       848 D~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTAtFsD~AN~---vA~----~~~fwl~  920 (1592)
T COG2902         848 DAIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTATFSDIANS---VAR----EYGFWLG  920 (1592)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCcccHHHHHHH---HHH----HhCCChh
Confidence            44    3467888998886553     1    1      111    6799999963 122211   111    2357889


Q ss_pred             cccCCCCCCCCC----cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHH--HHHHHCCCEEEEEECCCCeeeC
Q 012750          217 KPIDLGGSLGRE----AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAA--RLIHERGGKVIAVSDITGAVKN  290 (457)
Q Consensus       217 kp~~~GGs~gr~----~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a--~~L~~~GakVVaVsD~~G~iyn  290 (457)
                      |.+..|||.|.+    ++|++|+|++++.+++.+|.+++...|.++|.|.+.+.+.  .+|..+..++||+.|++|.++|
T Consensus       921 DAFaSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgNgMLLS~~irLiAAfDhrhIFiD 1000 (1592)
T COG2902         921 DAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGNGMLLSKHIRLIAAFDHRHIFID 1000 (1592)
T ss_pred             hhhhcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCccccccceeccccceeeEEecCCceeeC
Confidence            999999998876    7999999999999999999999999999999766555555  5777888899999999999999


Q ss_pred             C-CCCCHHHHHH---hHhhcCCcccCCC------C------------------------eecCCCc----ccccc-----
Q 012750          291 A-DGIDIHKLLA---HKDKTGSLKDFDG------G------------------------DSMEPSE----LLAHE-----  327 (457)
Q Consensus       291 p-~GLDi~~L~~---~~~~~g~~~~~~~------~------------------------~~i~~~e----ll~~~-----  327 (457)
                      | -++|...+.+   ....+.+|.+|..      +                        +.++|.|    +|..|     
T Consensus      1001 P~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~P~elitAILKapvDLLw 1080 (1592)
T COG2902        1001 PNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVDLLW 1080 (1592)
T ss_pred             CCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCCccccChHHHHHHHHcCchhhhc
Confidence            9 5677776665   3445667877741      1                        1122333    33433     


Q ss_pred             ---cceeeccccC-Cccccccc--------ccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHh
Q 012750          328 ---CDVLIPCALG-GVLKRENA--------ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWV  395 (457)
Q Consensus       328 ---~DIliPaA~~-~~It~~na--------~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~  395 (457)
                         .|.+|||+.+ |.++.+||        .+++||+|+||||..+|+.++-.+..+|..+..|+++|+|||.||.+|.+
T Consensus      1081 ~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~EVn 1160 (1592)
T COG2902        1081 NGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHEVN 1160 (1592)
T ss_pred             cCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcCCeecchhhcccCCCcccchhhh
Confidence               5667888876 56666554        45799999999999999999999999999999999999999999999998


Q ss_pred             hhcc------cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012750          396 QNIQ------GFMWEEDKVNNELRRYMIRAFHNIKGMC  427 (457)
Q Consensus       396 qn~~------~~~w~~e~v~~~l~~~m~~~~~~v~~~a  427 (457)
                      ..+.      ....+.++.+..|.. |++.+.+++..-
T Consensus      1161 iKIal~~a~~~g~l~~~~Rn~Llas-mtdeV~~lVl~n 1197 (1592)
T COG2902        1161 IKIALNSAVFAGKLTRGERNALLAS-MTDEVASLVLRN 1197 (1592)
T ss_pred             hHHhhhhhhhcCCcchhhHHHHHHH-HHHHHHHHHHhh
Confidence            6652      335567888888888 898888876543

>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Probab=99.96  E-value=3.6e-30  Score=220.54  Aligned_cols=100  Identities=43%  Similarity=0.645  Sum_probs=95.9

Q ss_pred             cceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHH
Q 012750          328 CDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDK  407 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~  407 (457)
                      ||||+|||++++||++|+++++||+|+||||+|+|++++++|++|||+|+||+++|+|||++||+||.|+++.   ++++
T Consensus         3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~e~   79 (102)
T smart00839        3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---TAEE   79 (102)
T ss_pred             cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---CHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998764   8899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q 012750          408 VNNELRRYMIRAFHNIKGMCQTH  430 (457)
Q Consensus       408 v~~~l~~~m~~~~~~v~~~a~~~  430 (457)
                      +.+++.++|.+++.++++.|+++
T Consensus        80 v~~~~~~~i~~~~~~v~~~a~~~  102 (102)
T smart00839       80 VFTDLSEIMRNALEEIFETAQKY  102 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999998753

Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.

>PRK08374 homoserine dehydrogenase; Provisional

Probab=99.28  E-value=5.1e-12  Score=129.56  Aligned_cols=168  Identities=20%  Similarity=0.313  Sum_probs=115.9

Q ss_pred             CeEEEEecChHHHHHHHHHHH--------CC--CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCC---CeecC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE--------RG--GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG---GDSME  319 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~--------~G--akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~---~~~i~  319 (457)
                      .+|+||||||||+.++++|.+        .|  .+|++|+|++|++|||+|+|++++++++++++.+..|+.   ...++
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            689999999999999999977        45  799999999999999999999999999999888877752   22346


Q ss_pred             CCccc-ccccceeeccccCCcccccccccccceEEEecCCCCC--------C-HHHHHHHHhCCCeEecccccccC-Cc-
Q 012750          320 PSELL-AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPT--------D-PEADEILSKRGVTILPDIYANSG-GV-  387 (457)
Q Consensus       320 ~~ell-~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~--------t-~~a~~iL~~rGI~viPD~laNaG-GV-  387 (457)
                      .++++ +.++||+|.|+     +.+++..+.++++.+|-+.-+        . ++-.++-+++|+.+.-  -+|.| |+ 
T Consensus        83 ~~ell~~~~~DVvVd~t-----~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~--ea~v~~GiP  155 (336)
T PRK08374         83 PEEIVEEIDADIVVDVT-----NDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLF--EATVMAGTP  155 (336)
T ss_pred             HHHHHhcCCCCEEEECC-----CcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEE--eccccccCC
Confidence            66787 57999999775     345777766666666655431        1 2233455678887763  33333 43 


Q ss_pred             eehhHHHhhhc---------ccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          388 TVSYFEWVQNI---------QGF-MWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       388 i~S~~E~~qn~---------~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                      +.+-   +++.         ++. .=+-.-+..++++  ...|.+++..|++.|.
T Consensus       156 ii~~---l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~--g~~f~eal~eAq~~Gy  205 (336)
T PRK08374        156 IIGL---LRENLLGDTVKRIEAVVNATTTFILTRMEQ--GKTFEEALKEAQTLGI  205 (336)
T ss_pred             chHH---HHhhccccceEEEEEEEechHHHHHHHhhC--CCCHHHHHHHHHHcCC
Confidence            2222   2221         110 0122345555643  5678999999998876

>PRK06392 homoserine dehydrogenase; Provisional

Probab=99.08  E-value=1.7e-10  Score=117.86  Aligned_cols=175  Identities=22%  Similarity=0.271  Sum_probs=106.3

Q ss_pred             CeEEEEecChHHHHHHHHHHH--------CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHE--------RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL  324 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~--------~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell  324 (457)
                      ++|+||||||||+.++++|.+        .+.+||+|+|+++++|||+|||++++++++++ +.+..++ .+.++.++++
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~-~~~~~~~~ll   78 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEID-YEKIKFDEIF   78 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCC-CCcCCHHHHh
Confidence            379999999999999999987        36799999999999999999999999998866 6665553 1223456677


Q ss_pred             ccccceeeccccCCccccccc-----ccccceEEEecCCC-CCC---HHHHHHHHhCCCeEecccccccCCceehhHHHh
Q 012750          325 AHECDVLIPCALGGVLKRENA-----ADVKAKFIIEAANH-PTD---PEADEILSKRGVTILPDIYANSGGVTVSYFEWV  395 (457)
Q Consensus       325 ~~~~DIliPaA~~~~It~~na-----~~i~akiIvEgAN~-p~t---~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~  395 (457)
                      ..++||+|+|+..+ .+.+-+     +-++...=|=-||- |+.   ++-.+.-+++|+.+.-.-...+|=-+..-+...
T Consensus        79 ~~~~DVvVE~t~~~-~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~~~~  157 (326)
T PRK06392         79 EIKPDVIVDVTPAS-KDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLRDYS  157 (326)
T ss_pred             cCCCCEEEECCCCC-CcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhhhhh
Confidence            78999999998643 121111     11222221223442 222   333344556777766554333332233222211


Q ss_pred             h------hccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          396 Q------NIQG-FMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       396 q------n~~~-~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                      .      .+++ +.=+-.-+..++++  ...|.+.+..|++.|.
T Consensus       158 ~~g~~i~~i~GilnGT~nyIl~~m~~--g~~f~~al~eAq~lG~  199 (326)
T PRK06392        158 TLPSRIKNFRGIVSSTINYVIRQEAN--GRGFLDVVKIAQKMGI  199 (326)
T ss_pred             cccCCEEEEEEEEeChHHHHHhhccC--CCCHHHHHHHHHHcCC
Confidence            0      0000 00012234455542  5578899999998876

>PRK06270 homoserine dehydrogenase; Provisional

Probab=98.71  E-value=4.1e-08  Score=100.97  Aligned_cols=177  Identities=22%  Similarity=0.351  Sum_probs=110.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHC----------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe-ecCCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD-SMEPS  321 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~-~i~~~  321 (457)
                      .+|+|+|||+||+.+++.|.+.          +.+|++|+|+++.+|+|+|+|++++.++.++.+.+..|++.. ..+.+
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            5899999999999999999765          589999999999999999999999998888777666665332 22445


Q ss_pred             ccc-ccccceeeccccCCccccccccc-----c--cceEEEecCC-CCCC---HHHHHHHHhCCCeEecccccccCCcee
Q 012750          322 ELL-AHECDVLIPCALGGVLKRENAAD-----V--KAKFIIEAAN-HPTD---PEADEILSKRGVTILPDIYANSGGVTV  389 (457)
Q Consensus       322 ell-~~~~DIliPaA~~~~It~~na~~-----i--~akiIvEgAN-~p~t---~~a~~iL~~rGI~viPD~laNaGGVi~  389 (457)
                      +++ +.++||+|.|+..+.-+.+.+..     +  +..+|++  | .|.+   ++-.+..+++|+.+.-.-...+|--+.
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta--NK~pla~~~~eL~~~A~~~g~~~~~ea~v~~glPii  160 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS--NKGPLALAYKELKELAKKNGVRFRYEATVGGAMPII  160 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC--CcHHHHhhHHHHHHHHHHcCCEEEEeeeeeechhHH
Confidence            666 46899999998765443322221     2  3455552  3 3432   444456668888775322222222222


Q ss_pred             hhH-HHhhh-----ccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          390 SYF-EWVQN-----IQG-FMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       390 S~~-E~~qn-----~~~-~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                      ..+ +.+..     +.+ +.=+-.-+..++++. ...|.+++..|++.|.
T Consensus       161 ~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~G~  209 (341)
T PRK06270        161 NLAKETLAGNDIKSIKGILNGTTNYILTRMEEE-GLSYEQALAEAQELGY  209 (341)
T ss_pred             HHHHhhcccCceEEEEEEEeCcHHHHHHHHhhc-CCCHHHHHHHHHHcCC
Confidence            221 11110     000 011223455555321 5678999999998876

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.65  E-value=1.9e-07  Score=77.08  Aligned_cols=84  Identities=30%  Similarity=0.412  Sum_probs=70.2

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      +||+|++..+++..+..+.++++++++|+|+|++|+.+++.|.+.+.+.+.++|+                         
T Consensus         1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-------------------------   55 (86)
T cd05191           1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-------------------------   55 (86)
T ss_pred             ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------
Confidence            4899999999999988888899999999999999999999999986555557665                         


Q ss_pred             ccCCCCeecCCCcccccccceeeccccCCccccc--ccccccceEEEecC
Q 012750          310 KDFDGGDSMEPSELLAHECDVLIPCALGGVLKRE--NAADVKAKFIIEAA  357 (457)
Q Consensus       310 ~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~--na~~i~akiIvEgA  357 (457)
                                         |++|+|+....+..+  +....++.+|++.|
T Consensus        56 -------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          56 -------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             -------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence                               999999987766655  56666778887764

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN02700 homoserine dehydrogenase family protein

Probab=98.25  E-value=2.6e-06  Score=88.75  Aligned_cols=50  Identities=28%  Similarity=0.360  Sum_probs=42.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC-------C--CEEEEEECCCCeeeCCC----CCCHHHHHH
Q 012750          252 DLTFVIQGFGNVGSWAARLIHER-------G--GKVIAVSDITGAVKNAD----GIDIHKLLA  301 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~-------G--akVVaVsD~~G~iynp~----GLDi~~L~~  301 (457)
                      -.+|+|.|+|+||+.++++|.++       |  .+|++|+|+++.++||+    |||++.+.+
T Consensus         3 ~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~   65 (377)
T PLN02700          3 KIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSE   65 (377)
T ss_pred             EEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHH
Confidence            45789999999999999987643       3  58999999999999965    999888776

>PRK06813 homoserine dehydrogenase; Validated

Probab=98.05  E-value=1.8e-05  Score=81.84  Aligned_cols=176  Identities=19%  Similarity=0.215  Sum_probs=98.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHC----------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCc
Q 012750          253 LTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSE  322 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~e  322 (457)
                      .+|+|.|||+||+.++++|.++          ..+|++|+|+++.+++++|+|++.+++.......+..|.   ...+++
T Consensus         3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~---~~~~~~   79 (346)
T PRK06813          3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYI---EHHPEE   79 (346)
T ss_pred             eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhh---ccChHH
Confidence            5799999999999999998754          258999999999999999999988665432211111111   011223


Q ss_pred             cc--ccccceeeccccCCccccccccc-----ccceEEEecCCCC-CC---HHHHHHHHhCCCeEecccccccCCceehh
Q 012750          323 LL--AHECDVLIPCALGGVLKRENAAD-----VKAKFIIEAANHP-TD---PEADEILSKRGVTILPDIYANSGGVTVSY  391 (457)
Q Consensus       323 ll--~~~~DIliPaA~~~~It~~na~~-----i~akiIvEgAN~p-~t---~~a~~iL~~rGI~viPD~laNaGGVi~S~  391 (457)
                      ++  ..+.||+|.|+..+..+.+-+..     ++...=|=-||=. ++   ++-.+.-+++|+.+.-.-..-+|==+...
T Consensus        80 ~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI~~  159 (346)
T PRK06813         80 RATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTLDI  159 (346)
T ss_pred             HhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchHHH
Confidence            33  23689999997655444443322     2222222244543 22   34444556777777655433222222222


Q ss_pred             HHHhh------hcccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          392 FEWVQ------NIQGF-MWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       392 ~E~~q------n~~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                      +....      .+.+. .=+-.-+..++.+ -...|.+++..|++.|.
T Consensus       160 l~~~~~g~~I~~i~GIlNGT~NyIL~~m~~-~g~~f~eal~~Aq~lGy  206 (346)
T PRK06813        160 GQFSLAGCHIEKIEGILNGTTNYILTKMNE-EDITFEEALKEAQSKGI  206 (346)
T ss_pred             HhhhcccCcEEEEEEEEechHHHHHhhhhh-cCCCHHHHHHHHHHcCC
Confidence            22110      00000 0011233344432 13478899999998886

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.85  E-value=7.7e-05  Score=69.28  Aligned_cols=110  Identities=25%  Similarity=0.377  Sum_probs=63.7

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcc
Q 012750          244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL  323 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~el  323 (457)
                      +..+.-+.|++++|.|||+||+.+|+.|...|++|+ |+|.+          +-.+++...     .+|   +..+-++.
T Consensus        15 r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e~D----------Pi~alqA~~-----dGf---~v~~~~~a   75 (162)
T PF00670_consen   15 RATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTEID----------PIRALQAAM-----DGF---EVMTLEEA   75 (162)
T ss_dssp             HHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-SS----------HHHHHHHHH-----TT----EEE-HHHH
T ss_pred             hcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEECC----------hHHHHHhhh-----cCc---EecCHHHH
Confidence            355788999999999999999999999999999998 88873          334433322     223   22232344


Q ss_pred             cccccceeeccccC-CcccccccccccceEEE-ecCCCCCCHHHH-HHHHhCCCe
Q 012750          324 LAHECDVLIPCALG-GVLKRENAADVKAKFII-EAANHPTDPEAD-EILSKRGVT  375 (457)
Q Consensus       324 l~~~~DIliPaA~~-~~It~~na~~i~akiIv-EgAN~p~t~~a~-~iL~~rGI~  375 (457)
                      + ..+||||-|+.. ++|+.+...++|=..|+ ...-  ++.|.+ +.|.+.++.
T Consensus        76 ~-~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh--~d~Eid~~~L~~~~~~  127 (162)
T PF00670_consen   76 L-RDADIFVTATGNKDVITGEHFRQMKDGAILANAGH--FDVEIDVDALEANAVE  127 (162)
T ss_dssp             T-TT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSS--STTSBTHHHHHTCTSE
T ss_pred             H-hhCCEEEECCCCccccCHHHHHHhcCCeEEeccCc--CceeEeeccccccCcE
Confidence            4 378999988754 67898888888654444 3322  233333 357766553

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.81  E-value=0.00056  Score=61.37  Aligned_cols=130  Identities=18%  Similarity=0.222  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe
Q 012750          237 YATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD  316 (457)
Q Consensus       237 ~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~  316 (457)
                      ++++.++++.+.+++++++.|.|.|++|+.+++.|.+.|...|.+.|.+          .+.+.+..++.+.. .. ...
T Consensus         4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~----------~~~~~~~~~~~~~~-~~-~~~   71 (155)
T cd01065           4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT----------LEKAKALAERFGEL-GI-AIA   71 (155)
T ss_pred             HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHhhc-cc-cee
Confidence            3456666667888899999999999999999999998874434466653          23333333321110 00 001


Q ss_pred             ecCCCcccccccceeeccccCCcccccccc----cc-cceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750          317 SMEPSELLAHECDVLIPCALGGVLKRENAA----DV-KAKFIIEAANHPTDPEADEILSKRGVTILPD  379 (457)
Q Consensus       317 ~i~~~ell~~~~DIliPaA~~~~It~~na~----~i-~akiIvEgAN~p~t~~a~~iL~~rGI~viPD  379 (457)
                      ..+..+. -.++|++|-|......+.++..    .+ .-++|++-+-.|...+..+.++++|+.++|-
T Consensus        72 ~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g  138 (155)
T cd01065          72 YLDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDG  138 (155)
T ss_pred             ecchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCC
Confidence            1122233 2489999999876654112111    11 3467777765564337778899999988774

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.74  E-value=0.00014  Score=74.71  Aligned_cols=167  Identities=21%  Similarity=0.293  Sum_probs=94.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC----------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP  320 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~  320 (457)
                      +-.+|.|.|||+||+.++++|.++          ..+|++|+|+++..+.  ++|...+ +.+...+...       .+.
T Consensus         2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~-~~~~~~~~~~-------~~~   71 (333)
T COG0460           2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA-EVWTTDGALS-------LGD   71 (333)
T ss_pred             ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch-hhheeccccc-------ccH
Confidence            346899999999999999999875          3599999999998774  3444333 2222222211       122


Q ss_pred             CcccccccceeeccccCCccccccccc----ccceEEEecCCCC-CCH---HHHHHHHhCCCeEecccccccCCc-eehh
Q 012750          321 SELLAHECDVLIPCALGGVLKRENAAD----VKAKFIIEAANHP-TDP---EADEILSKRGVTILPDIYANSGGV-TVSY  391 (457)
Q Consensus       321 ~ell~~~~DIliPaA~~~~It~~na~~----i~akiIvEgAN~p-~t~---~a~~iL~~rGI~viPD~laNaGGV-i~S~  391 (457)
                      +.+...+.||++++...+.-+.+-++.    ++...-|=-||=+ .+.   |-.+.-+++|+.+.=.... +||+ +.+.
T Consensus        72 ~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV-~gGiPiI~~  150 (333)
T COG0460          72 EVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATV-GGGIPIIKL  150 (333)
T ss_pred             hhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeee-ccCcchHHH
Confidence            334577899999998775544442222    3333333345554 332   2333445666555433222 2332 2211


Q ss_pred             HHHhhhcc-c---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          392 FEWVQNIQ-G---------FMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       392 ~E~~qn~~-~---------~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                         +++.- +         +.=+-..+..++++- ...|.++++.|++.|.
T Consensus       151 ---lr~~l~g~~I~~i~GIlNGT~NyIlt~m~~~-~~~f~dal~eAq~lGy  197 (333)
T COG0460         151 ---LRELLAGDEILSIRGILNGTTNYILTRMEEG-GLSFEDALAEAQELGY  197 (333)
T ss_pred             ---HHhhcccCceEEEEEEEeccHHHHHHHHHcc-CCCHHHHHHHHHHcCC
Confidence               11110 0         011334556666652 2289999999999875

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.69  E-value=0.00035  Score=70.52  Aligned_cols=126  Identities=23%  Similarity=0.308  Sum_probs=85.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG  307 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g  307 (457)
                      ...|+.|.+.   .+++..+.++.|+++.|+|+|.+|+.+|+.|...|++|+ |.|.+.          +.+.+..+.  
T Consensus       130 ~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R~~----------~~~~~~~~~--  193 (287)
T TIGR02853       130 SIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGARSS----------ADLARITEM--  193 (287)
T ss_pred             cHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeCCH----------HHHHHHHHC--
Confidence            3467776654   445556778999999999999999999999999999987 666632          222222111  


Q ss_pred             CcccCCCCeecCCCccc--ccccceeeccccCCccccccccccc-ceEEEecCCCCC-CHHHHHHHHhCCCeEe
Q 012750          308 SLKDFDGGDSMEPSELL--AHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT-DPEADEILSKRGVTIL  377 (457)
Q Consensus       308 ~~~~~~~~~~i~~~ell--~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~-t~~a~~iL~~rGI~vi  377 (457)
                            +...++.+++-  -.++|+++-|.....++.+..+.++ -.+|+.-+..|- |+-  +..+++|+..+
T Consensus       194 ------g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~  259 (287)
T TIGR02853       194 ------GLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL  259 (287)
T ss_pred             ------CCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence                  11222212221  2389999999877777776666653 368898888884 433  57789998765

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=97.60  E-value=0.00014  Score=83.05  Aligned_cols=180  Identities=15%  Similarity=0.219  Sum_probs=98.2

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHC---------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCC
Q 012750          245 EHGQAIRDLTFVIQGFGNVGSWAARLIHER---------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGG  315 (457)
Q Consensus       245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~---------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~  315 (457)
                      .+-.+-+..+|+|.|||+||+.++++|.++         ..+|++|+|+++.+++|+|+|++.+.+......  ..+ +.
T Consensus       458 ~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~--~~~-~~  534 (819)
T PRK09436        458 SFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAG--EPF-DL  534 (819)
T ss_pred             HHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhcc--CCC-CH
Confidence            343445778999999999999999998653         358999999999999999999987665443321  111 10


Q ss_pred             eecCCCccc---ccccceeeccccCCcccccccccccceEEEecCCCC-CC------HHHHHHHHhCCCeEecccccccC
Q 012750          316 DSMEPSELL---AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHP-TD------PEADEILSKRGVTILPDIYANSG  385 (457)
Q Consensus       316 ~~i~~~ell---~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p-~t------~~a~~iL~~rGI~viPD~laNaG  385 (457)
                      ..+  -+++   ..+.||+|+|.-...+...-..-++..+=|=-||=. .+      ++-.+.-+++|+.+...-... |
T Consensus       535 ~~~--~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~-~  611 (819)
T PRK09436        535 DRL--IRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVG-A  611 (819)
T ss_pred             HHH--HHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeec-c
Confidence            000  0122   236789999976543322211223332222245543 22      223344557777776543222 2


Q ss_pred             Cc-eehhH-HHhh---hc---ccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          386 GV-TVSYF-EWVQ---NI---QGF-MWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       386 GV-i~S~~-E~~q---n~---~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                      |+ +...+ +.++   ++   .+. .=+-.-+..++++  ...|.+++..|++.|.
T Consensus       612 giPii~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~~--g~~f~~al~~Aq~~Gy  665 (819)
T PRK09436        612 GLPVIETLQNLLNAGDELLKFEGILSGSLSFIFGKLDE--GMSFSEATRLAKEKGY  665 (819)
T ss_pred             ccchHHHHHHHHhccCcEEEEEEEEeChHHHHhhhhhc--CCCHHHHHHHHHHcCC
Confidence            33 11111 1111   00   010 0011233444433  4567888888888775

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.51  E-value=0.0029  Score=64.01  Aligned_cols=95  Identities=17%  Similarity=0.313  Sum_probs=70.1

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK  305 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~  305 (457)
                      -.++|..|++..    +++++.+++|++++|+|-|+ ||+.++.+|.++|+.|+ +++++.          ..|.+    
T Consensus       137 ~~PcTp~ai~~l----l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~t----------~~l~~----  197 (286)
T PRK14175        137 FVPCTPLGIMEI----LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSRS----------KDMAS----  197 (286)
T ss_pred             CCCCcHHHHHHH----HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc----------hhHHH----
Confidence            357899988665    45678999999999999988 99999999999999998 776642          01111    


Q ss_pred             cCCcccCCCCeecCCCcccccccceeeccccC-CcccccccccccceEEEecCCCC
Q 012750          306 TGSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAKFIIEAANHP  360 (457)
Q Consensus       306 ~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~akiIvEgAN~p  360 (457)
                                        ....+||+|-|... +.|+++.++.  ..+|++.+.++
T Consensus       198 ------------------~~~~ADIVIsAvg~p~~i~~~~vk~--gavVIDvGi~~  233 (286)
T PRK14175        198 ------------------YLKDADVIVSAVGKPGLVTKDVVKE--GAVIIDVGNTP  233 (286)
T ss_pred             ------------------HHhhCCEEEECCCCCcccCHHHcCC--CcEEEEcCCCc
Confidence                              12378999888754 4677765432  36788877766

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=97.40  E-value=0.00041  Score=79.21  Aligned_cols=174  Identities=18%  Similarity=0.193  Sum_probs=99.6

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHC--------C--CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHER--------G--GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM  318 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~--------G--akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i  318 (457)
                      +.+..+++|.|||+||+.++++|.++        |  .+|++|+|+++.+++++|+|...+.+......  ..+ ....+
T Consensus       455 ~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~--~~~-~~~~~  531 (810)
T PRK09466        455 AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEA--VEW-DEESL  531 (810)
T ss_pred             cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhc--CCc-cHHHH
Confidence            44567899999999999999998653        3  58999999999999999999888776544321  111 11000


Q ss_pred             CCCccc---ccccceeeccccCCcccccccccccceEEEecCCCCC-C------HHHHHHHHhCCCeEecccccccCCce
Q 012750          319 EPSELL---AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPT-D------PEADEILSKRGVTILPDIYANSGGVT  388 (457)
Q Consensus       319 ~~~ell---~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~-t------~~a~~iL~~rGI~viPD~laNaGGVi  388 (457)
                        -+++   ..+.+|+|.|.....+...-..-+++..=|=-||=.. +      ++-.+.-+++|+.+...-...+|=-+
T Consensus       532 --~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPi  609 (810)
T PRK09466        532 --FLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPI  609 (810)
T ss_pred             --HHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccCh
Confidence              1222   2234699999765433322223344444444667631 1      12234456788887755433332222


Q ss_pred             ehhHHHhhhcc--cC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          389 VSYFEWVQNIQ--GF---------MWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       389 ~S~~E~~qn~~--~~---------~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                      ..-   ++++.  +.         .=+-.-+..++++  ...|.+++..|++.|.
T Consensus       610 i~~---l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~--g~~f~eal~~Aq~~Gy  659 (810)
T PRK09466        610 NHT---VRDLRNSGDSILAISGIFSGTLSWLFLQFDG--SVPFSELVDQAWQQGL  659 (810)
T ss_pred             HHH---HHHHHhccCcEEEEEEEEccHHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence            211   22221  10         0011224444443  4578888889998775

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.34  E-value=0.0011  Score=67.01  Aligned_cols=126  Identities=25%  Similarity=0.316  Sum_probs=75.4

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG  307 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g  307 (457)
                      +.+|+.|   ++..++++.+.++.+++|.|.|+|.+|+.++..|...|++|+ ++|.+          .+.+.. .++. 
T Consensus       131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r~----------~~~~~~-~~~~-  194 (296)
T PRK08306        131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGARK----------SAHLAR-ITEM-  194 (296)
T ss_pred             cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHH-HHHc-
Confidence            3466666   444566777888999999999999999999999999999887 56664          222222 1211 


Q ss_pred             CcccCCCCeecCCCccc--ccccceeeccccCCcccccccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEe
Q 012750          308 SLKDFDGGDSMEPSELL--AHECDVLIPCALGGVLKRENAADV-KAKFIIEAANHPT-DPEADEILSKRGVTIL  377 (457)
Q Consensus       308 ~~~~~~~~~~i~~~ell--~~~~DIliPaA~~~~It~~na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~vi  377 (457)
                            +.+.+..+++-  -.++|++|-|+....++++-...+ +-.+|+.-|..|- |.-  +.-+++|+.++
T Consensus       195 ------G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~  260 (296)
T PRK08306        195 ------GLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKAL  260 (296)
T ss_pred             ------CCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEE
Confidence                  12222211211  137899998875555665544333 2245565555551 211  23355666554

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.33  E-value=0.0067  Score=64.23  Aligned_cols=183  Identities=21%  Similarity=0.301  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCC
Q 012750          234 GVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD  313 (457)
Q Consensus       234 Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~  313 (457)
                      ++..++-+.+++.-.+|++++|.|+|.|.+|.-+|+.|.++|.+-|.|++.+          .+...++.++-+      
T Consensus       160 Si~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT----------~erA~~La~~~~------  223 (414)
T COG0373         160 SISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT----------LERAEELAKKLG------  223 (414)
T ss_pred             chHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHhC------
Confidence            4555555556655566999999999999999999999999998777788874          455555555433      


Q ss_pred             CCeecCCCcccc--cccceeecc--ccCCcccccccccc-cc---eEEEecCCCC-CCHHHHHHHHhCCCeEeccccccc
Q 012750          314 GGDSMEPSELLA--HECDVLIPC--ALGGVLKRENAADV-KA---KFIIEAANHP-TDPEADEILSKRGVTILPDIYANS  384 (457)
Q Consensus       314 ~~~~i~~~ell~--~~~DIliPa--A~~~~It~~na~~i-~a---kiIvEgAN~p-~t~~a~~iL~~rGI~viPD~laNa  384 (457)
                       ++.++-+++.+  .++||+|-|  |...+|+.++++.. +.   .+|++-||-+ +.|+... |  .||.+.       
T Consensus       224 -~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~-l--~~v~l~-------  292 (414)
T COG0373         224 -AEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGE-L--PNVFLY-------  292 (414)
T ss_pred             -CeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCccccC-c--CCeEEE-------
Confidence             34444455543  499999999  56788998888774 22   3999999966 4443210 0  112110       


Q ss_pred             CCceehhHHHh--hhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHH
Q 012750          385 GGVTVSYFEWV--QNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCN-----LRMGAFTLGVNRVARAT  450 (457)
Q Consensus       385 GGVi~S~~E~~--qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~-----~r~aA~~~A~~rv~~a~  450 (457)
                         .+..++-+  .|+.    ..++...+.+.+|.+.+.+.++.-+...+.     +|.-|..+..+.+..+.
T Consensus       293 ---~iDDL~~iv~~n~~----~R~~~~~~ae~iIeee~~~~~~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~  358 (414)
T COG0373         293 ---TIDDLEEIVEENLE----ARKEEAAKAEAIIEEELAEFMEWLKKLEVVPTIRALREQAEDVREEELEKAL  358 (414)
T ss_pred             ---ehhhHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence               01111111  1111    233445566777777777777777766653     44444444444444433

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.30  E-value=0.003  Score=63.72  Aligned_cols=114  Identities=23%  Similarity=0.355  Sum_probs=69.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc--ccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH--ECD  329 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~--~~D  329 (457)
                      ++|.|+|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+. |       .... +++++.+.  .+|
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~~-g-------~~~~~~~~e~~~~~~~~d   61 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYDRN----------PEAVEALAEE-G-------ATGADSLEELVAKLPAPR   61 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEE-EEECC----------HHHHHHHHHC-C-------CeecCCHHHHHhhcCCCC
Confidence            379999999999999999999999986 55553          3344333322 1       1111 33444432  367


Q ss_pred             eeeccccCCccccccc----ccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecccccccCCc
Q 012750          330 VLIPCALGGVLKRENA----ADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPDIYANSGGV  387 (457)
Q Consensus       330 IliPaA~~~~It~~na----~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~laNaGGV  387 (457)
                      +++-|-.......+.+    ..+ .-++|+...+..  .+.+..+.++++|+.++ | ...+||+
T Consensus        62 vvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~  124 (301)
T PRK09599         62 VVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGV  124 (301)
T ss_pred             EEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCH
Confidence            7666544332222221    222 235777776654  34566688999999998 6 5666665

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.22  E-value=0.00096  Score=70.90  Aligned_cols=107  Identities=20%  Similarity=0.275  Sum_probs=69.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG  307 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g  307 (457)
                      ...||.|++.+++.+   .+..+.|++|+|+|+|++|+.+|+.|...|++|+ |+|.+.          ....+....  
T Consensus       191 ~~gt~~s~~~ai~ra---t~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d~dp----------~ra~~A~~~--  254 (425)
T PRK05476        191 RYGTGESLLDGIKRA---TNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTEVDP----------ICALQAAMD--  254 (425)
T ss_pred             cHHHHhhhHHHHHHh---ccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEcCCc----------hhhHHHHhc--
Confidence            356888887776544   2566899999999999999999999999999987 677532          222221111  


Q ss_pred             CcccCCCCeecCCCcccccccceeecccc-CCcccccccccccc-eEEEecC
Q 012750          308 SLKDFDGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVKA-KFIIEAA  357 (457)
Q Consensus       308 ~~~~~~~~~~i~~~ell~~~~DIliPaA~-~~~It~~na~~i~a-kiIvEgA  357 (457)
                            +.+..+.++++. .+||+|+|+- .+.|+.+....++- .+++-.+
T Consensus       255 ------G~~v~~l~eal~-~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        255 ------GFRVMTMEEAAE-LGDIFVTATGNKDVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             ------CCEecCHHHHHh-CCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence                  112222234443 7999999974 34676666666543 3444433

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.16  E-value=0.0013  Score=70.55  Aligned_cols=108  Identities=17%  Similarity=0.282  Sum_probs=69.4

Q ss_pred             HHHHHHHH-HHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          232 GRGVVYAT-EALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       232 g~Gv~~~~-~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      .+|...++ ...++..+..+.|++|.|+|+|+||+.+|+.|...|++|+ +.|.+.          ....+....     
T Consensus       233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e~dp----------~~a~~A~~~-----  296 (476)
T PTZ00075        233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTEIDP----------ICALQAAME-----  296 (476)
T ss_pred             HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhHHHHHhc-----
Confidence            44444433 4455566788999999999999999999999999999987 565431          111111111     


Q ss_pred             cCCCCeecCCCcccccccceeeccccC-Ccccccccccccc-eEEEecCCC
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKA-KFIIEAANH  359 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~a-kiIvEgAN~  359 (457)
                         +.+..+-++++ ..+||++.|+.. +.|+.+....++- -+++..+-+
T Consensus       297 ---G~~~~~leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        297 ---GYQVVTLEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             ---CceeccHHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence               22222334444 379999998643 5778777777765 355554444

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.05  E-value=0.03  Score=58.82  Aligned_cols=131  Identities=24%  Similarity=0.249  Sum_probs=83.7

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      +.+-=++..+-.+.++.|.++.|++|.|+|+|+||+.+|+.|...|.+|++ .|....   +.              +. 
T Consensus        94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~-~dp~~~---~~--------------~~-  154 (378)
T PRK15438         94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLL-CDPPRA---DR--------------GD-  154 (378)
T ss_pred             HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCccc---cc--------------cc-
Confidence            344444444444555678889999999999999999999999999999984 443110   00              00 


Q ss_pred             ccCCCCeecCCCcccccccceeecccc---------CCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-E
Q 012750          310 KDFDGGDSMEPSELLAHECDVLIPCAL---------GGVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-I  376 (457)
Q Consensus       310 ~~~~~~~~i~~~ell~~~~DIliPaA~---------~~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-v  376 (457)
                          .....+-++++. +|||++-+..         .+.|+++....++ -.+++..+=+++ ..+|- +.|+++-+. .
T Consensus       155 ----~~~~~~L~ell~-~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga  229 (378)
T PRK15438        155 ----EGDFRSLDELVQ-EADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSV  229 (378)
T ss_pred             ----ccccCCHHHHHh-hCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEE
Confidence                011123345553 6899874432         2456666666665 478999999984 55554 677766553 4


Q ss_pred             eccccccc
Q 012750          377 LPDIYANS  384 (457)
Q Consensus       377 iPD~laNa  384 (457)
                      +=|+.-+=
T Consensus       230 ~LDV~e~E  237 (378)
T PRK15438        230 VLDVWEGE  237 (378)
T ss_pred             EEecCCCC
Confidence            55655543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.04  E-value=0.0054  Score=59.82  Aligned_cols=135  Identities=24%  Similarity=0.282  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCE--EEEEECCCCeeeCCCC--CCHHHHHHhHhhc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGK--VIAVSDITGAVKNADG--IDIHKLLAHKDKT  306 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak--VVaVsD~~G~iynp~G--LDi~~L~~~~~~~  306 (457)
                      |+-=+..++..+++..|.+++++||+|.|.|.+|+.++..|.+.|.+  -+-+.|++|-++....  |... ..++.+..
T Consensus         4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~-~~~la~~~   82 (226)
T cd05311           4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPD-KNEIAKET   82 (226)
T ss_pred             hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHH-HHHHHHHh
Confidence            34344455666777778899999999999999999999999999987  5569999987765443  2211 12222221


Q ss_pred             CCcccCCCCeecCCCcccccccceeeccccCCcccccccccc-cceEEEecCCCCC-CHHHHHHHHhCCC
Q 012750          307 GSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV-KAKFIIEAANHPT-DPEADEILSKRGV  374 (457)
Q Consensus       307 g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI  374 (457)
                      +. .   .. ..+-.+.+. ++||+|=|+..+.++++-++.+ +..+|..-. +|+ |+-.+ ...+.|.
T Consensus        83 ~~-~---~~-~~~l~~~l~-~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~~-~A~~~ga  144 (226)
T cd05311          83 NP-E---KT-GGTLKEALK-GADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWPE-EAKEAGA  144 (226)
T ss_pred             cc-C---cc-cCCHHHHHh-cCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCHH-HHHHcCC
Confidence            10 0   00 011112333 5899999998888887766655 334777666 564 33323 3334466

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.02  E-value=0.0079  Score=56.21  Aligned_cols=96  Identities=20%  Similarity=0.265  Sum_probs=67.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChH-HHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHh
Q 012750          226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNV-GSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKD  304 (457)
Q Consensus       226 gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnV-G~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~  304 (457)
                      ...++|++.++..+    +....+++|++|.|+|.|.+ |..++++|.++|++|+ +++++-          +++.+   
T Consensus        22 ~~~p~~~~a~v~l~----~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-v~~r~~----------~~l~~---   83 (168)
T cd01080          22 GFIPCTPAGILELL----KRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-VCHSKT----------KNLKE---   83 (168)
T ss_pred             CccCChHHHHHHHH----HHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-EEECCc----------hhHHH---
Confidence            34567877776644    44457899999999999985 8889999999999866 666531          11111   


Q ss_pred             hcCCcccCCCCeecCCCcccccccceeeccccC-CcccccccccccceEEEecCCCC
Q 012750          305 KTGSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAKFIIEAANHP  360 (457)
Q Consensus       305 ~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~akiIvEgAN~p  360 (457)
                                         .-.++||+|-|... +.|+.+..++  ..+|++-|..+
T Consensus        84 -------------------~l~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr  119 (168)
T cd01080          84 -------------------HTKQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR  119 (168)
T ss_pred             -------------------HHhhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence                               12378888888764 5777766543  47888888754

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.99  E-value=0.0019  Score=60.27  Aligned_cols=116  Identities=24%  Similarity=0.342  Sum_probs=70.4

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc
Q 012750          246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA  325 (457)
Q Consensus       246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~  325 (457)
                      .+.++.|++|.|.|+|++|+.+|+.|...|.+|++. |.+.       -+..   ....        .+.+..+-++++.
T Consensus        30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~~-------~~~~---~~~~--------~~~~~~~l~ell~   90 (178)
T PF02826_consen   30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGY-DRSP-------KPEE---GADE--------FGVEYVSLDELLA   90 (178)
T ss_dssp             TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEE-ESSC-------HHHH---HHHH--------TTEEESSHHHHHH
T ss_pred             CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEe-cccC-------Chhh---hccc--------ccceeeehhhhcc
Confidence            356799999999999999999999999999999953 3332       1111   0000        0112223345554


Q ss_pred             cccceeecccc-----CCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eecccc
Q 012750          326 HECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDIY  381 (457)
Q Consensus       326 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~l  381 (457)
                       .||+++-+..     .+.|+++...+++ -.+++.-|-+.+ ..+|- +.|++.-|. .+=|+.
T Consensus        91 -~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~  154 (178)
T PF02826_consen   91 -QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVF  154 (178)
T ss_dssp             -H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-
T ss_pred             -hhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECC
Confidence             6999988775     3456666666665 358888998884 54443 567766554 444543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.91  E-value=0.0022  Score=58.97  Aligned_cols=109  Identities=30%  Similarity=0.376  Sum_probs=67.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      ++|.++|+|++|+.+|+.|.++|+.|. +.|.          +.+.+.+..+..        .+.. ++.|+. ..||++
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d~----------~~~~~~~~~~~g--------~~~~~s~~e~~-~~~dvv   61 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYDR----------SPEKAEALAEAG--------AEVADSPAEAA-EQADVV   61 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEE-EEES----------SHHHHHHHHHTT--------EEEESSHHHHH-HHBSEE
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEE-eecc----------chhhhhhhHHhh--------hhhhhhhhhHh-hcccce
Confidence            589999999999999999999999987 4554          245555555432        2222 233333 477988


Q ss_pred             eccccCC-----cccccc-cccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecccc
Q 012750          332 IPCALGG-----VLKREN-AADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPDIY  381 (457)
Q Consensus       332 iPaA~~~-----~It~~n-a~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~l  381 (457)
                      +-|-...     ++..++ +..+ +-++|++-.+..  .+.+..+.+.++|+.|+=--+
T Consensus        62 i~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV  120 (163)
T PF03446_consen   62 ILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPV  120 (163)
T ss_dssp             EE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence            8775432     222322 2223 568999888765  345667789999998875443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.85  E-value=0.0023  Score=57.20  Aligned_cols=103  Identities=19%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--c
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--A  325 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--~  325 (457)
                      .+++++++.|.|.|.+|+.++..|.+.|++=|.|++++          .+.+.++.++.+.    ...+.++-+++.  -
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt----------~~ra~~l~~~~~~----~~~~~~~~~~~~~~~   73 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT----------PERAEALAEEFGG----VNIEAIPLEDLEEAL   73 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS----------HHHHHHHHHHHTG----CSEEEEEGGGHCHHH
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC----------HHHHHHHHHHcCc----cccceeeHHHHHHHH
Confidence            47999999999999999999999999999855577763          4555555544210    011222333433  3


Q ss_pred             cccceeeccccCC--cccccccccccc--eEEEecCCCC-CCHH
Q 012750          326 HECDVLIPCALGG--VLKRENAADVKA--KFIIEAANHP-TDPE  364 (457)
Q Consensus       326 ~~~DIliPaA~~~--~It~~na~~i~a--kiIvEgAN~p-~t~~  364 (457)
                      .++||+|-|+...  .++++......-  ++|++-|+-+ ++|+
T Consensus        74 ~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~  117 (135)
T PF01488_consen   74 QEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPE  117 (135)
T ss_dssp             HTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TT
T ss_pred             hhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChh
Confidence            4899999997553  777777777653  6999999743 4554

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.80  E-value=0.0037  Score=66.33  Aligned_cols=102  Identities=19%  Similarity=0.295  Sum_probs=64.9

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      -||.+++   ..+++..+..+.|++|+|+|+|.+|..+++.+...|++|+ |+|.+          ...+...+. .   
T Consensus       183 g~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~d----------~~R~~~A~~-~---  244 (413)
T cd00401         183 GCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEVD----------PICALQAAM-E---  244 (413)
T ss_pred             hhchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEECC----------hhhHHHHHh-c---
Confidence            3666654   4455566788999999999999999999999999999987 56653          222222221 1   


Q ss_pred             ccCCCCeecCCCcccccccceeeccccC-Ccccccccccc--cceEEE
Q 012750          310 KDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADV--KAKFII  354 (457)
Q Consensus       310 ~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i--~akiIv  354 (457)
                          +...++.++.+ ..+||+|.|+.. ..++.+..+.+  .+.+|.
T Consensus       245 ----G~~~~~~~e~v-~~aDVVI~atG~~~~i~~~~l~~mk~Ggilvn  287 (413)
T cd00401         245 ----GYEVMTMEEAV-KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCN  287 (413)
T ss_pred             ----CCEEccHHHHH-cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEE
Confidence                22222223433 368999999753 45555434444  344433

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.75  E-value=0.015  Score=60.00  Aligned_cols=108  Identities=21%  Similarity=0.252  Sum_probs=70.2

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      |.++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+.     +   ...    ....       +....+.++++. 
T Consensus       145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~-----~---~~~----~~~~-------~~~~~~l~ell~-  203 (333)
T PRK13243        145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL-YYSRTR-----K---PEA----EKEL-------GAEYRPLEELLR-  203 (333)
T ss_pred             ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC-----C---hhh----HHHc-------CCEecCHHHHHh-
Confidence            456899999999999999999999999999988 445532     1   010    0110       112223345543 


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~  375 (457)
                      +||+++-|...     +.|+++....++ -.+++.-+=+++ ..+| .+.|++.-|.
T Consensus       204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~  260 (333)
T PRK13243        204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA  260 (333)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence            78999988754     345555555553 368888888874 4444 3677766553

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.73  E-value=0.021  Score=61.70  Aligned_cols=153  Identities=16%  Similarity=0.276  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      -+.|...+++    +.+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.|.+          .+++.+..++.+.  
T Consensus       315 D~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~R~----------~~~~~~la~~~~~--  377 (477)
T PRK09310        315 DGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFNRT----------KAHAEALASRCQG--  377 (477)
T ss_pred             CHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHhcc--
Confidence            4667766664    45778899999999999999999999999999876 55542          2333333322110  


Q ss_pred             cCCCCeecCCCccc-ccccceeeccccCCcccccccccccceEEEecCCCCC-CHHHHHHHHhCCCeEecccccccCCce
Q 012750          311 DFDGGDSMEPSELL-AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPT-DPEADEILSKRGVTILPDIYANSGGVT  388 (457)
Q Consensus       311 ~~~~~~~i~~~ell-~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~-t~~a~~iL~~rGI~viPD~laNaGGVi  388 (457)
                           ..++.+++- -.++|++|-|...+..-.+.   +. ++|++-.-+|. |+ --+..+++|+.++..         
T Consensus       378 -----~~~~~~~~~~l~~~DiVInatP~g~~~~~~---l~-~~v~D~~Y~P~~T~-ll~~A~~~G~~~~~G---------  438 (477)
T PRK09310        378 -----KAFPLESLPELHRIDIIINCLPPSVTIPKA---FP-PCVVDINTLPKHSP-YTQYARSQGSSIIYG---------  438 (477)
T ss_pred             -----ceechhHhcccCCCCEEEEcCCCCCcchhH---Hh-hhEEeccCCCCCCH-HHHHHHHCcCEEECc---------
Confidence                 011111111 13789999887654322221   22 48899888884 55 446677888766543         


Q ss_pred             ehhHHHhhh---cccCCCCHHHHHHHHHHHHHHHHHH
Q 012750          389 VSYFEWVQN---IQGFMWEEDKVNNELRRYMIRAFHN  422 (457)
Q Consensus       389 ~S~~E~~qn---~~~~~w~~e~v~~~l~~~m~~~~~~  422 (457)
                         +|++-.   .+-..|+..+..++|+...++.+.+
T Consensus       439 ---~~Ml~~Qa~~~f~lw~g~~~~~~~~~~~~~~~~~  472 (477)
T PRK09310        439 ---YEMFAEQALLQFRLWFPTLLFKHLEKTFRRRVAN  472 (477)
T ss_pred             ---HHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence               343321   1223577766677776655444433

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.72  E-value=0.021  Score=58.18  Aligned_cols=53  Identities=21%  Similarity=0.166  Sum_probs=45.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+.|..|+...    ++++|.+++|++|+|+|-| .||+.+|.+|.++|+.|+ +++++
T Consensus       139 ~PcTp~aii~l----L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~  192 (301)
T PRK14194        139 TPCTPSGCLRL----LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSR  192 (301)
T ss_pred             CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCC
Confidence            46898888655    5566999999999999996 999999999999999998 66653

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.69  E-value=0.021  Score=57.83  Aligned_cols=53  Identities=26%  Similarity=0.347  Sum_probs=44.4

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChH-HHHHHHHHHHCCCEEEEEECC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNV-GSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnV-G~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..+.|..|+..    ++++++++++|++|+|+|.|++ |+-++.+|.++|+.|+ ++++
T Consensus       137 ~~PcTp~aii~----lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs  190 (285)
T PRK14189        137 FRPCTPYGVMK----MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHS  190 (285)
T ss_pred             CcCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecC
Confidence            35789888855    4566799999999999998877 9999999999999988 4544

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.66  E-value=0.015  Score=61.18  Aligned_cols=48  Identities=25%  Similarity=0.372  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          236 VYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       236 ~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +..+-.+.++.|.++.|++|.|+|+|+||+.+|+.|...|.+|++ .|.
T Consensus       100 ~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~-~Dp  147 (381)
T PRK00257        100 LGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLV-CDP  147 (381)
T ss_pred             HHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEE-ECC
Confidence            333344445677889999999999999999999999999999984 454

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.65  E-value=0.024  Score=57.40  Aligned_cols=53  Identities=26%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .++|..|++..    +++++.+++|++++|+|-++ ||+-++.+|.++|+.|+ +++++
T Consensus       139 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~  192 (285)
T PRK10792        139 RPCTPRGIMTL----LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRF  192 (285)
T ss_pred             CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECC
Confidence            57899988655    55668999999999999988 99999999999999887 77663

>PLN02494 adenosylhomocysteinase

Probab=96.64  E-value=0.014  Score=62.74  Aligned_cols=113  Identities=17%  Similarity=0.287  Sum_probs=70.0

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      -||.+++.+   +++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ |.|.+.          .........    
T Consensus       235 GtgqS~~d~---i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~dp----------~r~~eA~~~----  296 (477)
T PLN02494        235 GCRHSLPDG---LMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEIDP----------ICALQALME----  296 (477)
T ss_pred             cccccHHHH---HHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhhHHHHhc----
Confidence            466666444   45556777999999999999999999999999999988 555531          111111111    


Q ss_pred             ccCCCCeecCCCcccccccceeeccccC-Ccccccccccccce-EEEecCC--CCCCHHH
Q 012750          310 KDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAK-FIIEAAN--HPTDPEA  365 (457)
Q Consensus       310 ~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~ak-iIvEgAN--~p~t~~a  365 (457)
                       +|   ..++-++++ ..+||++-|+-. +.|+.+....++.. +++-.+.  ..+..++
T Consensus       297 -G~---~vv~leEal-~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~a  351 (477)
T PLN02494        297 -GY---QVLTLEDVV-SEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLG  351 (477)
T ss_pred             -CC---eeccHHHHH-hhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHH
Confidence             11   112223433 268999987653 46677777777542 4444444  3354443

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.60  E-value=0.03  Score=57.99  Aligned_cols=102  Identities=12%  Similarity=0.181  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCC
Q 012750          235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG  314 (457)
Q Consensus       235 v~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~  314 (457)
                      +.+++..+++.+ .++++++|.|+|.|.+|+-+++.|.++|++-+-|++.+-..     ++.+.+.              
T Consensus       158 v~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~~--------------  217 (338)
T PRK00676        158 IESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-----LPYRTVV--------------  217 (338)
T ss_pred             HHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-----cchhhhh--------------
Confidence            444444445554 45999999999999999999999999997655588876411     1111100              


Q ss_pred             CeecCCCcccccccceeecc-----ccCCcccccccccccceEEEecCCCC
Q 012750          315 GDSMEPSELLAHECDVLIPC-----ALGGVLKRENAADVKAKFIIEAANHP  360 (457)
Q Consensus       315 ~~~i~~~ell~~~~DIliPa-----A~~~~It~~na~~i~akiIvEgAN~p  360 (457)
                      .+.+   + +..++||+|-|     +....|+.+..+...-|++++-|+-.
T Consensus       218 ~~~~---~-~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR  264 (338)
T PRK00676        218 REEL---S-FQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR  264 (338)
T ss_pred             hhhh---h-cccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC
Confidence            0000   1 12578999964     55667887777666668999999844

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.57  E-value=0.029  Score=56.72  Aligned_cols=53  Identities=19%  Similarity=0.221  Sum_probs=45.1

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..++|..||...    +++++.+++|++++|+|- |.||.-+|.+|.++|+.|+ ++.+
T Consensus       137 ~~PcTp~avi~l----L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s  190 (284)
T PRK14179        137 MIPCTPAGIMEM----FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHS  190 (284)
T ss_pred             CcCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECC
Confidence            357899998554    556799999999999998 9999999999999999987 5543

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=96.50  E-value=0.065  Score=58.93  Aligned_cols=178  Identities=19%  Similarity=0.233  Sum_probs=119.2

Q ss_pred             CHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHH
Q 012750          159 SNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYA  238 (457)
Q Consensus       159 s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~  238 (457)
                      +-.|-..+...|++++..-.||..-|-=+|++...  ---+.+.|+.   ..| ++.          +.-.-||-=+..+
T Consensus       244 ~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~---~i~-~Fn----------DDiQGTaaV~lAg  307 (581)
T PLN03129        244 TGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN--AFRLLQRYRT---THL-CFN----------DDIQGTAAVALAG  307 (581)
T ss_pred             chhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc--HHHHHHHhcc---CCC-Eec----------cccchHHHHHHHH
Confidence            44566778999999999888876545567777542  2224556642   111 111          2224577777778


Q ss_pred             HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH-----CCC-------EEEEEECCCCeeeCCCCCCHHHHHHhHhhc
Q 012750          239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE-----RGG-------KVIAVSDITGAVKNADGIDIHKLLAHKDKT  306 (457)
Q Consensus       239 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-----~Ga-------kVVaVsD~~G~iynp~GLDi~~L~~~~~~~  306 (457)
                      +-.+++..|.+++..||++.|.|..|-.+|++|.+     .|.       ++. +.|++|-+++...-++..-+..+.+.
T Consensus       308 ll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~-~vD~~GLi~~~r~~~l~~~k~~fa~~  386 (581)
T PLN03129        308 LLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIW-LVDSKGLVTKSRKDSLQPFKKPFAHD  386 (581)
T ss_pred             HHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEE-EEcCCCeEeCCCCccChHHHHHHHhh
Confidence            88888888999999999999999999999999876     466       554 88999999986642122222222211


Q ss_pred             CCcccCCCCeecCCCccc-ccccceeecccc-CCcccccccccc----cceEEEecCCCCC
Q 012750          307 GSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADV----KAKFIIEAANHPT  361 (457)
Q Consensus       307 g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~p~  361 (457)
                      .       ....+-.|.+ ..+.||||=++. ++.+|++-++..    +=.||---+| |+
T Consensus       387 ~-------~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSN-Pt  439 (581)
T PLN03129        387 H-------EPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSN-PT  439 (581)
T ss_pred             c-------ccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC-CC
Confidence            1       0111223334 458999999985 689999877665    4478888888 54

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.47  E-value=0.043  Score=55.54  Aligned_cols=53  Identities=32%  Similarity=0.268  Sum_probs=45.2

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .-++|..|++..    +++++.+++|++|+|+|-| .||.-+|.+|.++|+.|. ++++
T Consensus       136 ~~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs  189 (285)
T PRK14191        136 FVPATPMGVMRL----LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHI  189 (285)
T ss_pred             CCCCcHHHHHHH----HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeC
Confidence            357899888654    5567999999999999988 999999999999999987 6655

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.45  E-value=0.066  Score=54.75  Aligned_cols=109  Identities=23%  Similarity=0.299  Sum_probs=70.5

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .++.|+||.|+|+|++|+.+|+.|...|.+|++. |...    +.     ..         ...     ..+-++++. .
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~-~~~~----~~-----~~---------~~~-----~~~l~ell~-~  197 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA-EHKG----AS-----VC---------REG-----YTPFEEVLK-Q  197 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE-CCCc----cc-----cc---------ccc-----cCCHHHHHH-h
Confidence            3589999999999999999999999999999864 3321    00     00         000     112344553 6


Q ss_pred             cceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eecccc
Q 012750          328 CDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDIY  381 (457)
Q Consensus       328 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~l  381 (457)
                      ||+++-+...     +.|+.+...++| --+++.-|=+++ ..+|- +.|.+.-|. ..=|+.
T Consensus       198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~  260 (314)
T PRK06932        198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL  260 (314)
T ss_pred             CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence            8998877643     445555555554 467888888884 55443 677776664 344443

>PRK12861 malic enzyme; Reviewed

Probab=96.43  E-value=0.04  Score=62.58  Aligned_cols=178  Identities=24%  Similarity=0.267  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHH
Q 012750          164 ERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALL  243 (457)
Q Consensus       164 e~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l  243 (457)
                      +.+. .|++++.+-.|.   |-=+|++...  ---+.++|++...        -|+.    .+.-.-||-=+..++..++
T Consensus       119 d~~v-~~v~a~~~~fg~---i~lED~~~p~--~f~il~~~~~~~~--------ipvf----~DD~qGTa~v~lA~llnal  180 (764)
T PRK12861        119 DKLV-DIIAGLEPTFGG---INLEDIKAPE--CFTVERKLRERMK--------IPVF----HDDQHGTAITVSAAFINGL  180 (764)
T ss_pred             HHHH-HHHHHHHhhcCC---ceeeeccCch--HHHHHHHHHhcCC--------CCee----ccccchHHHHHHHHHHHHH
Confidence            4466 889999887754   4456766432  2234566664211        1221    1222347777777888889


Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCCC--CCHHHHHHhHhhcCCcccCCCCeec
Q 012750          244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNADG--IDIHKLLAHKDKTGSLKDFDGGDSM  318 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~G--LDi~~L~~~~~~~g~~~~~~~~~~i  318 (457)
                      +..|.+++..||++.|.|.-|..++++|.+.|.   +|+ +.|++|.++....  ++..+. .+.+.+    +     ..
T Consensus       181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~-~~D~~Gli~~~r~~~l~~~k~-~~a~~~----~-----~~  249 (764)
T PRK12861        181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIW-VTDIEGVVYRGRTTLMDPDKE-RFAQET----D-----AR  249 (764)
T ss_pred             HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEE-EEcCCCeeeCCCcccCCHHHH-HHHhhc----C-----CC
Confidence            988999999999999999999999999999998   566 8999999998553  543222 122211    0     01


Q ss_pred             CCCcccccccceeeccccCCccccccccccc-ceEEEecCCCCC---CHHHHHHHHhCCC
Q 012750          319 EPSELLAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT---DPEADEILSKRGV  374 (457)
Q Consensus       319 ~~~ell~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~---t~~a~~iL~~rGI  374 (457)
                      +-.|.+. .+||||=++..+.+|++-+.... =.||---|| |+   ||+  +..+.+|-
T Consensus       250 ~L~eai~-~advliG~S~~g~ft~e~v~~Ma~~PIIFaLsN-PtpE~~pe--~a~~~~g~  305 (764)
T PRK12861        250 TLAEVIG-GADVFLGLSAGGVLKAEMLKAMAARPLILALAN-PTPEIFPE--LAHATRDD  305 (764)
T ss_pred             CHHHHHh-cCCEEEEcCCCCCCCHHHHHHhccCCEEEECCC-CCccCCHH--HHHhcCCC
Confidence            2234444 36999999999999998877763 357777777 54   444  34444443

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=96.43  E-value=0.0021  Score=55.67  Aligned_cols=90  Identities=27%  Similarity=0.389  Sum_probs=52.4

Q ss_pred             ecChHHHHHHHHHHHC----CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cccceeec
Q 012750          259 GFGNVGSWAARLIHER----GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECDVLIP  333 (457)
Q Consensus       259 GfGnVG~~~a~~L~~~----GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~DIliP  333 (457)
                      |||+||+.+++.|.+.    +.+|++|+|++ .+.+++      ...... ..       ....+.+++++ .++||+|+
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~------~~~~~~-~~-------~~~~~~~~~~~~~~~dvvVE   65 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD------WAASFP-DE-------AFTTDLEELIDDPDIDVVVE   65 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT------HHHHHT-HS-------CEESSHHHHHTHTT-SEEEE
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh------hhhhcc-cc-------cccCCHHHHhcCcCCCEEEE
Confidence            8999999999999876    68999999999 777766      111110 00       11112345554 47888888


Q ss_pred             cccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCce
Q 012750          334 CALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVT  388 (457)
Q Consensus       334 aA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi  388 (457)
                      |+..+.                     . .+.-...-++|+.|   +.+|.|...
T Consensus        66 ~t~~~~---------------------~-~~~~~~~L~~G~~V---Vt~nk~ala   95 (117)
T PF03447_consen   66 CTSSEA---------------------V-AEYYEKALERGKHV---VTANKGALA   95 (117)
T ss_dssp             -SSCHH---------------------H-HHHHHHHHHTTCEE---EES-HHHHH
T ss_pred             CCCchH---------------------H-HHHHHHHHHCCCeE---EEECHHHhh
Confidence            843221                     1 12233445689988   457887664

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.40  E-value=0.05  Score=55.39  Aligned_cols=53  Identities=21%  Similarity=0.198  Sum_probs=45.3

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -.++|.+|++..    +++.+.+++|++|+|+| .|.||..+|.+|.+.|+.|+ |+++
T Consensus       137 ~~PcTp~ai~~l----l~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~  190 (296)
T PRK14188        137 LVPCTPLGCMML----LRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHS  190 (296)
T ss_pred             CcCCCHHHHHHH----HHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECC
Confidence            357899888665    45568999999999999 99999999999999999998 6653

>PRK07574 formate dehydrogenase; Provisional

Probab=96.39  E-value=0.044  Score=57.78  Aligned_cols=114  Identities=17%  Similarity=0.200  Sum_probs=73.1

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCee-cCCCccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDS-MEPSELLAH  326 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~-i~~~ell~~  326 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.+       ..+.+...    ..       +.+. .+.++++ .
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~-~dr~-------~~~~~~~~----~~-------g~~~~~~l~ell-~  247 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY-TDRH-------RLPEEVEQ----EL-------GLTYHVSFDSLV-S  247 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-ECCC-------CCchhhHh----hc-------CceecCCHHHHh-h
Confidence            358999999999999999999999999999984 3442       22211110    00       1111 2334555 4


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eecccc
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIY  381 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~l  381 (457)
                      .|||++-+...     +.|+++....+| -.+++.-|-+++ ..+| .+.|++.-|. ..=|+.
T Consensus       248 ~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~  311 (385)
T PRK07574        248 VCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVW  311 (385)
T ss_pred             cCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecC
Confidence            79999888753     445555555553 368888888885 3333 4678877664 444443

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.36  E-value=0.054  Score=55.27  Aligned_cols=111  Identities=18%  Similarity=0.314  Sum_probs=72.9

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .+|.|++|.|+|||++|+.+|+++...|.+|++ .|..+.-. ..                  ++   +..+-++++. .
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~-~d~~~~~~-~~------------------~~---~~~~l~ell~-~  196 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY-YSTSGKNK-NE------------------EY---ERVSLEELLK-T  196 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEE-ECCCcccc-cc------------------Cc---eeecHHHHhh-c
Confidence            468999999999999999999999999999985 34432100 00                  11   1223345553 6


Q ss_pred             cceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCeEeccccc
Q 012750          328 CDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVTILPDIYA  382 (457)
Q Consensus       328 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~viPD~la  382 (457)
                      ||+++-+...     +.|+++...++| --+++.-|=+++ ..+| .+.|++.-|...=|+..
T Consensus       197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~~  259 (311)
T PRK08410        197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDVLE  259 (311)
T ss_pred             CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEecCC
Confidence            8988777643     355566666664 468888888884 4444 36787766664455543

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.32  E-value=0.01  Score=62.85  Aligned_cols=119  Identities=22%  Similarity=0.305  Sum_probs=70.1

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      .||.+++.+   +++..+..+.|++|+|+|+|++|+.+|+.+...|++|+ |.|.+          +....+... .   
T Consensus       176 g~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d~d----------p~r~~~A~~-~---  237 (406)
T TIGR00936       176 GTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTEVD----------PIRALEAAM-D---  237 (406)
T ss_pred             ccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEeCC----------hhhHHHHHh-c---
Confidence            466655543   34445677999999999999999999999999999987 56542          222222111 1   


Q ss_pred             ccCCCCeecCCCcccccccceeeccccC-Ccccccccccccc-eEEEecCCCC--CCHHH-HHHHHh
Q 012750          310 KDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKA-KFIIEAANHP--TDPEA-DEILSK  371 (457)
Q Consensus       310 ~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~a-kiIvEgAN~p--~t~~a-~~iL~~  371 (457)
                          +....+.++.+ ..+||+|.|+-. +.|+.+....++- .+++-.+-.+  ++.++ .+.+.+
T Consensus       238 ----G~~v~~leeal-~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~  299 (406)
T TIGR00936       238 ----GFRVMTMEEAA-KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE  299 (406)
T ss_pred             ----CCEeCCHHHHH-hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence                12222223443 378999988643 4566555555432 3444444433  44333 344444

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02928 oxidoreductase family protein

Probab=96.30  E-value=0.1  Score=54.08  Aligned_cols=125  Identities=21%  Similarity=0.332  Sum_probs=74.0

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCC--CCeecCCCccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD--GGDSMEPSELL  324 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~--~~~~i~~~ell  324 (457)
                      +.++.|+++.|+|+|++|+.+|+.|...|.+|++ .|.+..   ++   ......+..  .....+.  .....+-++++
T Consensus       154 ~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~-~dr~~~---~~---~~~~~~~~~--~~~~~~~~~~~~~~~L~ell  224 (347)
T PLN02928        154 GDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLA-TRRSWT---SE---PEDGLLIPN--GDVDDLVDEKGGHEDIYEFA  224 (347)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEE-ECCCCC---hh---hhhhhcccc--ccccccccccCcccCHHHHH
Confidence            3469999999999999999999999999999985 454311   00   000000000  0000000  01112223444


Q ss_pred             ccccceeecccc-----CCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eecccc
Q 012750          325 AHECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDIY  381 (457)
Q Consensus       325 ~~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~l  381 (457)
                      . .|||++-|..     .+.|+++....+| -.+++.-|=+++ ..+|- +.|.+.-|. ..=|+.
T Consensus       225 ~-~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~  289 (347)
T PLN02928        225 G-EADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA  289 (347)
T ss_pred             h-hCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence            3 6899988875     3456666666664 468888888884 55543 567666553 344554

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.26  E-value=0.028  Score=59.37  Aligned_cols=124  Identities=27%  Similarity=0.357  Sum_probs=88.7

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCE---EEEEECCCCeeeCCC-CCCHHH-HHHhH
Q 012750          229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGK---VIAVSDITGAVKNAD-GIDIHK-LLAHK  303 (457)
Q Consensus       229 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak---VVaVsD~~G~iynp~-GLDi~~-L~~~~  303 (457)
                      .-||-=+..++-.+++..|.+|+..+|++.|.|.-|-..+++|...|.+   |+ +.|+.|.+|+.. -++..+ ..++.
T Consensus       176 qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~-~~D~~G~l~~~r~~~~~~~~k~~~a  254 (432)
T COG0281         176 QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF-VVDRKGLLYDGREDLTMNQKKYAKA  254 (432)
T ss_pred             cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEE-EEecCCcccCCCcccccchHHHHHH
Confidence            3477777778888899999999999999999999999999999999984   55 899999999743 211111 11111


Q ss_pred             -hhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccc-eEEEecCCCCCCHHH
Q 012750          304 -DKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA-KFIIEAANHPTDPEA  365 (457)
Q Consensus       304 -~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~p~t~~a  365 (457)
                       +.++...        +  +.--..+|||+=|+..+++|++-++.... .+|---|| |+ ||+
T Consensus       255 ~~~~~~~~--------~--~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaN-P~-pEi  306 (432)
T COG0281         255 IEDTGERT--------L--DLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALAN-PT-PEI  306 (432)
T ss_pred             Hhhhcccc--------c--cccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCC-CC-ccC
Confidence             1221111        1  12345899999999999999987777533 57777777 54 544

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.24  E-value=0.016  Score=59.66  Aligned_cols=108  Identities=29%  Similarity=0.357  Sum_probs=64.8

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecC-CCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME-PSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~-~~ell~  325 (457)
                      |.++.|+||-|+|||++|+.+|+.|...|.+|++ .|..      ..-+             .....+...++ -+++|.
T Consensus       137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~-~d~~------~~~~-------------~~~~~~~~~~~~Ld~lL~  196 (324)
T COG0111         137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG-YDPY------SPRE-------------RAGVDGVVGVDSLDELLA  196 (324)
T ss_pred             cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEE-ECCC------Cchh-------------hhccccceecccHHHHHh
Confidence            4578999999999999999999999999999995 3331      1100             00111112122 234443


Q ss_pred             cccceeecccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750          326 HECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT  375 (457)
Q Consensus       326 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~  375 (457)
                       .|||++-...     .+.|+.+...++| --+++..|=+++ ..+| .+.|.+.-|.
T Consensus       197 -~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~  253 (324)
T COG0111         197 -EADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA  253 (324)
T ss_pred             -hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence             6777765542     2455555556653 227777777774 3333 2455555454

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.23  E-value=0.015  Score=58.71  Aligned_cols=107  Identities=19%  Similarity=0.277  Sum_probs=68.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc--cccce
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA--HECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~--~~~DI  330 (457)
                      ++|.|+|+|++|..+++.|.+.|.+|+ +.|.+          .+.+.+..+. + ...+.     +.+++.+  ..+|+
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr~----------~~~~~~l~~~-g-~~~~~-----s~~~~~~~~~~~dv   62 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYDHD----------QDAVKAMKED-R-TTGVA-----NLRELSQRLSAPRV   62 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHc-C-CcccC-----CHHHHHhhcCCCCE
Confidence            379999999999999999999999987 45542          3444444332 1 11111     2223332  36898


Q ss_pred             eeccccCCcccccc----cccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEec
Q 012750          331 LIPCALGGVLKREN----AADV-KAKFIIEAANHP--TDPEADEILSKRGVTILP  378 (457)
Q Consensus       331 liPaA~~~~It~~n----a~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viP  378 (457)
                      ++-|.... ...+.    ++.+ +-++|++..|..  .|.+..+.+.++|+.++-
T Consensus        63 Ii~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd  116 (298)
T TIGR00872        63 VWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD  116 (298)
T ss_pred             EEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence            87775444 22222    2223 237899999984  566667789999998764

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.20  E-value=0.11  Score=51.57  Aligned_cols=131  Identities=17%  Similarity=0.188  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      -+.|...+++.    .+...+++++.|.|.|.+|+.++..|.+.|++|+ |.|.+          .+++.+..++-.   
T Consensus       100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~R~----------~~~~~~la~~~~---  161 (270)
T TIGR00507       100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IANRT----------VSKAEELAERFQ---  161 (270)
T ss_pred             CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHHh---
Confidence            56677776543    3455678999999999999999999999998776 66653          233333332211   


Q ss_pred             cCCCCeecCCCcccccccceeeccccCCccccc-----cccccc-ceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKRE-----NAADVK-AKFIIEAANHPTDPEADEILSKRGVTILPD  379 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~-----na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~viPD  379 (457)
                      .+......+.++....++||+|-|+..+.-...     ....++ -++|++-.-.|....--+..+++|+.++..
T Consensus       162 ~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G~~~vdG  236 (270)
T TIGR00507       162 RYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPFLAEAKSLGTKTIDG  236 (270)
T ss_pred             hcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCCeeeCC
Confidence            111111122222222479999999865432111     112232 358888888774224556678888877543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=96.16  E-value=0.013  Score=60.63  Aligned_cols=104  Identities=22%  Similarity=0.324  Sum_probs=73.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG  307 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g  307 (457)
                      ..-||.+.+-++..+   .+.-+.|+.++|.|||.||+..|..|...|++|+ |++.+-         +.+|....    
T Consensus       188 rYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtEvDP---------I~AleA~M----  250 (420)
T COG0499         188 RYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTEVDP---------IRALEAAM----  250 (420)
T ss_pred             ccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCeEE-EEecCc---------hHHHHHhh----
Confidence            345777777666554   3455899999999999999999999999999988 888742         44443322    


Q ss_pred             CcccCCCCeecCCCcccccccceeecccc-CCcccccccccccceEEE
Q 012750          308 SLKDFDGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVKAKFII  354 (457)
Q Consensus       308 ~~~~~~~~~~i~~~ell~~~~DIliPaA~-~~~It~~na~~i~akiIv  354 (457)
                        .+|   +.++-++.. ...||||-|+. .++|+.+.....+=..|+
T Consensus       251 --dGf---~V~~m~~Aa-~~gDifiT~TGnkdVi~~eh~~~MkDgaIl  292 (420)
T COG0499         251 --DGF---RVMTMEEAA-KTGDIFVTATGNKDVIRKEHFEKMKDGAIL  292 (420)
T ss_pred             --cCc---EEEEhHHhh-hcCCEEEEccCCcCccCHHHHHhccCCeEE
Confidence              222   333222222 25699999975 479999988888665555

>PLN03139 formate dehydrogenase; Provisional

Probab=96.15  E-value=0.07  Score=56.27  Aligned_cols=114  Identities=19%  Similarity=0.256  Sum_probs=72.3

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.+       ..+.+...    +.       +.+.. +.++++ 
T Consensus       194 ~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~~-------~~~~~~~~----~~-------g~~~~~~l~ell-  253 (386)
T PLN03139        194 AYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDRL-------KMDPELEK----ET-------GAKFEEDLDAML-  253 (386)
T ss_pred             CcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECCC-------CcchhhHh----hc-------CceecCCHHHHH-
Confidence            3469999999999999999999999999999974 4543       22222111    11       11112 334555 


Q ss_pred             cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eeccc
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDI  380 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~  380 (457)
                      ..|||++-|...     +.|+++....++ -.+++.-|=+++ ..+| .+.|++.-|. +.=|+
T Consensus       254 ~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV  317 (386)
T PLN03139        254 PKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDV  317 (386)
T ss_pred             hhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcC
Confidence            469999887653     345444444443 368888888884 4444 3677777665 34444

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.14  E-value=0.013  Score=63.19  Aligned_cols=171  Identities=18%  Similarity=0.132  Sum_probs=99.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh---cC-CcccCCCCeecCCCccccc--
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK---TG-SLKDFDGGDSMEPSELLAH--  326 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~---~g-~~~~~~~~~~i~~~ell~~--  326 (457)
                      .+|.|+|.|++|+++|+.|.++|.+|+ +.|.+          .+...++.+.   .+ .+..+     -+++++.+.  
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~i~~~-----~s~~e~v~~l~   65 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYNRT----------YEKTEEFVKKAKEGNTRVKGY-----HTLEELVNSLK   65 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhhhhcCCcceec-----CCHHHHHhcCC
Confidence            379999999999999999999999977 55553          3444333322   11 11111     134455532  


Q ss_pred             ccceeeccccCCccccc----ccccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecccccccCCc---------ee-
Q 012750          327 ECDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPDIYANSGGV---------TV-  389 (457)
Q Consensus       327 ~~DIliPaA~~~~It~~----na~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~laNaGGV---------i~-  389 (457)
                      ++|+++-|........+    ..+.+ +-++|+++.|.-  .|.+-.+.+.++||.++=--+  +||.         .+ 
T Consensus        66 ~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapV--SGG~~gA~~G~~lm~G  143 (470)
T PTZ00142         66 KPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGV--SGGEEGARYGPSLMPG  143 (470)
T ss_pred             CCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCC--CCCHHHHhcCCEEEEe
Confidence            68877766444333322    23333 358999999985  356666789999999863221  1222         11 


Q ss_pred             ---hhHHHhhhc----cc-------CCCC--------HHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHH
Q 012750          390 ---SYFEWVQNI----QG-------FMWE--------EDKVNNELRRYMIRAFHNIKGMCQ-THNCNLRMGAFTL  441 (457)
Q Consensus       390 ---S~~E~~qn~----~~-------~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~  441 (457)
                         ..|+.++.+    ..       ..|-        -.-|+..++.-+-+.+.+.++.++ ..++++.+.+.++
T Consensus       144 G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~  218 (470)
T PTZ00142        144 GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF  218 (470)
T ss_pred             CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence               123333221    00       0110        123455566666777778888876 5788777665544

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.12  E-value=0.051  Score=55.87  Aligned_cols=113  Identities=21%  Similarity=0.224  Sum_probs=71.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~  325 (457)
                      |.+|.|+|+.|+|+|++|+.+|+.|. ..|.+|++ .|...        +.+...    .      + +.+..+-++++.
T Consensus       140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~-~~~~~--------~~~~~~----~------~-~~~~~~l~ell~  199 (323)
T PRK15409        140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILY-NARRH--------HKEAEE----R------F-NARYCDLDTLLQ  199 (323)
T ss_pred             cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEE-ECCCC--------chhhHH----h------c-CcEecCHHHHHH
Confidence            45799999999999999999999997 78999984 44321        001000    0      0 122234455553


Q ss_pred             cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eeccc
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDI  380 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~  380 (457)
                       .||+++-+...     +.|+.+...++| -.+++.-|-+++ ..+|- +.|++.-|. ..=|+
T Consensus       200 -~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDV  262 (323)
T PRK15409        200 -ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDV  262 (323)
T ss_pred             -hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeec
Confidence             88998877643     345555555553 468888888885 44443 677766664 33443

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.04  E-value=0.0024  Score=56.41  Aligned_cols=112  Identities=23%  Similarity=0.242  Sum_probs=64.3

Q ss_pred             CeEEEEec-ChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750          253 LTFVIQGF-GNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD  329 (457)
Q Consensus       253 ~~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D  329 (457)
                      .||+|.|+ |++|+.+++.+.+ .+.+++++.|++..-  -.|-|+.++......        +.... +.++++.. +|
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~--~~g~d~g~~~~~~~~--------~~~v~~~l~~~~~~-~D   69 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA--KVGKDVGELAGIGPL--------GVPVTDDLEELLEE-AD   69 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST--TTTSBCHHHCTSST---------SSBEBS-HHHHTTH--S
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc--cccchhhhhhCcCCc--------ccccchhHHHhccc-CC
Confidence            47999999 9999999999988 799999999997622  135566555432110        11111 12345555 99


Q ss_pred             eeeccccCCccccccccc---ccceEEEecCCCCCCHHHHHHHHh----CCCeEec
Q 012750          330 VLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEILSK----RGVTILP  378 (457)
Q Consensus       330 IliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a~~iL~~----rGI~viP  378 (457)
                      |+|.++..... .+|++.   -+..+|++=.-  .+++-.+.|++    -++++.|
T Consensus        70 VvIDfT~p~~~-~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vl~a~  122 (124)
T PF01113_consen   70 VVIDFTNPDAV-YDNLEYALKHGVPLVIGTTG--FSDEQIDELEELAKKIPVLIAP  122 (124)
T ss_dssp             EEEEES-HHHH-HHHHHHHHHHT-EEEEE-SS--SHHHHHHHHHHHTTTSEEEE-S
T ss_pred             EEEEcCChHHh-HHHHHHHHhCCCCEEEECCC--CCHHHHHHHHHHhccCCEEEeC
Confidence            99999743322 223332   26677774322  34554455554    4445544

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.03  E-value=0.042  Score=55.44  Aligned_cols=122  Identities=23%  Similarity=0.245  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC-------EEEEEECCCCeeeCCCC-CCHHH
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER----GG-------KVIAVSDITGAVKNADG-IDIHK  298 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga-------kVVaVsD~~G~iynp~G-LDi~~  298 (457)
                      ||-=+..++-.+++..|.+++..||++.|.|.-|.+++++|.+.    |.       ++. +.|++|-+++... ++. .
T Consensus         4 Ta~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~-~vD~~Gll~~~r~~l~~-~   81 (279)
T cd05312           4 TAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW-LVDSKGLLTKDRKDLTP-F   81 (279)
T ss_pred             HHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE-EEcCCCeEeCCCCcchH-H
Confidence            55556667788888889999999999999999999999999765    87       554 8899999998654 321 1


Q ss_pred             HHHhHhhcCCcccCCCCeecCCCccc-ccccceeecccc-CCcccccccccc----cceEEEecCCCCC
Q 012750          299 LLAHKDKTGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADV----KAKFIIEAANHPT  361 (457)
Q Consensus       299 L~~~~~~~g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~p~  361 (457)
                      ...+.+....      ....+-.|.+ ..++||||=++. ++.+|++-++..    +=.||---+| |+
T Consensus        82 ~~~~a~~~~~------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN-Pt  143 (279)
T cd05312          82 KKPFARKDEE------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSN-PT  143 (279)
T ss_pred             HHHHHhhcCc------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCC-cC
Confidence            2222222110      0111223444 459999999984 689999877765    3468887887 54

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.00  E-value=0.023  Score=56.29  Aligned_cols=109  Identities=18%  Similarity=0.181  Sum_probs=66.1

Q ss_pred             CeEEEEec-ChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750          253 LTFVIQGF-GNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV  330 (457)
Q Consensus       253 ~~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI  330 (457)
                      ++|+|.|+ |.+|+..++.+.+ .+.++++++|.+..-...          . .. ..+..+     -+.++++. ++|+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~----------~-~~-~~i~~~-----~dl~~ll~-~~Dv   63 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG----------Q-GA-LGVAIT-----DDLEAVLA-DADV   63 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc----------c-CC-CCcccc-----CCHHHhcc-CCCE
Confidence            58999998 9999999998876 579999999985421100          0 00 011111     12234554 7999


Q ss_pred             eeccccCCccccccccc---ccceEEEecCCCCCCH-HHHHHH---HhCCCeEeccccc
Q 012750          331 LIPCALGGVLKRENAAD---VKAKFIIEAANHPTDP-EADEIL---SKRGVTILPDIYA  382 (457)
Q Consensus       331 liPaA~~~~It~~na~~---i~akiIvEgAN~p~t~-~a~~iL---~~rGI~viPD~la  382 (457)
                      +|.|+..+.. .+++..   -+..+|++  ....++ +++++.   ++.++++.|.+.-
T Consensus        64 Vid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~  119 (257)
T PRK00048         64 LIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSI  119 (257)
T ss_pred             EEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence            9999865544 444444   35678876  334454 333332   3356777777643

>PRK13529 malate dehydrogenase; Provisional

Probab=95.99  E-value=0.19  Score=55.17  Aligned_cols=183  Identities=21%  Similarity=0.255  Sum_probs=118.6

Q ss_pred             CHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHH
Q 012750          159 SNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYA  238 (457)
Q Consensus       159 s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~  238 (457)
                      +-.|-..+...|++++.... |..-|-=+|++...  ---+.+.|+.-   .| ++.          +.-.-||-=+..+
T Consensus       219 ~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~---i~-~Fn----------DDiQGTaaV~LAg  281 (563)
T PRK13529        219 RGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKN--ARRILERYRDE---IC-TFN----------DDIQGTGAVTLAG  281 (563)
T ss_pred             chHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCch--HHHHHHHhccC---CC-eec----------cccchHHHHHHHH
Confidence            44567788999999998776 54445567776542  23345666531   11 111          2223577777778


Q ss_pred             HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEECCCCeeeCCCCCCHHHHHH-hHhhc
Q 012750          239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE----RGG-------KVIAVSDITGAVKNADGIDIHKLLA-HKDKT  306 (457)
Q Consensus       239 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~iynp~GLDi~~L~~-~~~~~  306 (457)
                      +-.+++..|.+++..||++.|.|..|-++|++|.+    .|.       ++. +.|++|-++...+ |+..-.. +.+..
T Consensus       282 ll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~-~vD~~GLl~~~r~-~l~~~k~~fa~~~  359 (563)
T PRK13529        282 LLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFF-MVDRQGLLTDDMP-DLLDFQKPYARKR  359 (563)
T ss_pred             HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCCC-cchHHHHHHhhhc
Confidence            88889988999999999999999999999999876    587       555 8899999998765 3222222 22221


Q ss_pred             CCcccCCCC-eecCCCccc-ccccceeecccc-CCccccccccccc----ceEEEecCCCCC
Q 012750          307 GSLKDFDGG-DSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANHPT  361 (457)
Q Consensus       307 g~~~~~~~~-~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~p~  361 (457)
                      ..+..++.. ...+-.|.+ ..+.||||=++. .+.+|++-++...    =.||---+| |+
T Consensus       360 ~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt  420 (563)
T PRK13529        360 EELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSN-PT  420 (563)
T ss_pred             ccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC-cC
Confidence            111111110 001222333 457899999987 6899998776653    367777777 54

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.99  E-value=0.089  Score=53.16  Aligned_cols=53  Identities=23%  Similarity=0.228  Sum_probs=45.0

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -.+.|..|++..    +++++.+++|++|+|.|.+ .||+.++.+|...|+.|. ++++
T Consensus       131 ~~PcTp~av~~l----l~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs  184 (279)
T PRK14178        131 FAPCTPNGIMTL----LHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHS  184 (279)
T ss_pred             CCCCCHHHHHHH----HHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEec
Confidence            357899988655    5567999999999999987 999999999999999887 6655

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.97  E-value=0.058  Score=55.01  Aligned_cols=103  Identities=20%  Similarity=0.287  Sum_probs=66.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      ..|.|++|.|.|+|++|+.+|+.|...|.+|++. |.+.   .+.|..               .    ...+.++++ .+
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~-~r~~---~~~~~~---------------~----~~~~l~ell-~~  173 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAY-TRSY---VNDGIS---------------S----IYMEPEDIM-KK  173 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE-CCCC---cccCcc---------------c----ccCCHHHHH-hh
Confidence            3589999999999999999999998899999854 4431   111110               0    011334555 37


Q ss_pred             cceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCC
Q 012750          328 CDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGV  374 (457)
Q Consensus       328 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI  374 (457)
                      ||+++-|...     +.|+.+....++ -.+++.-+=+++ ..++ .+.|.++-+
T Consensus       174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i  228 (303)
T PRK06436        174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND  228 (303)
T ss_pred             CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence            8999888753     345544455543 357777777774 4444 467777645

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.92  E-value=0.022  Score=57.04  Aligned_cols=112  Identities=18%  Similarity=0.221  Sum_probs=68.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHH--CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHE--RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~--~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      ++.+||.|+|+|.+|+..++.|.+  .+.++++|+|.+          .+...+..++.+...-+     -+.++++. +
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~----------~~~a~~~a~~~g~~~~~-----~~~eell~-~   67 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD----------PQRHADFIWGLRRPPPV-----VPLDQLAT-H   67 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC----------HHHHHHHHHhcCCCccc-----CCHHHHhc-C
Confidence            456899999999999999998876  478999888873          33444433332211111     13455654 6


Q ss_pred             cceeeccccCCccccccccc-c--cceEEEecCCCC-CCHHHHHHHHhCCCeE-ec
Q 012750          328 CDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHP-TDPEADEILSKRGVTI-LP  378 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p-~t~~a~~iL~~rGI~v-iP  378 (457)
                      +|+++.|+..... .+-+.. +  +.-++++..-.. ...+..+..+++|+.+ +|
T Consensus        68 ~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~  122 (271)
T PRK13302         68 ADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP  122 (271)
T ss_pred             CCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence            8999999876543 332222 2  335677632211 1234445677888865 55

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.92  E-value=0.01  Score=49.14  Aligned_cols=90  Identities=28%  Similarity=0.260  Sum_probs=56.3

Q ss_pred             eEEEEecChHHHHHHHHHHHCC---CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750          254 TFVIQGFGNVGSWAARLIHERG---GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV  330 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI  330 (457)
                      |+.|+|+||+|..+++-|.+.|   .+|.-+++.+          .+.+.+++++.+.-     ....++.++++ ++||
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~-~adv   64 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS----------PEKAAELAKEYGVQ-----ATADDNEEAAQ-EADV   64 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS----------HHHHHHHHHHCTTE-----EESEEHHHHHH-HTSE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc----------HHHHHHHHHhhccc-----cccCChHHhhc-cCCE
Confidence            6889999999999999999999   8887554553          56666666553310     01113445555 8999


Q ss_pred             eeccccCCccccc--c-cccccceEEEecCCC
Q 012750          331 LIPCALGGVLKRE--N-AADVKAKFIIEAANH  359 (457)
Q Consensus       331 liPaA~~~~It~~--n-a~~i~akiIvEgAN~  359 (457)
                      ++.|-....+.+-  . ....+-|+|+.-+|+
T Consensus        65 vilav~p~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   65 VILAVKPQQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             EEE-S-GGGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             EEEEECHHHHHHHHHHHhhccCCCEEEEeCCC
Confidence            9999765544321  1 122355677665553

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.90  E-value=0.26  Score=52.33  Aligned_cols=99  Identities=18%  Similarity=0.356  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--cc
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--AH  326 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--~~  326 (457)
                      ++.+++|.|.|.|.+|+.+++.|...|++-|.|++.+          .+.+.+..++.+.       ..++.+++.  -.
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~----------~~ra~~la~~~g~-------~~~~~~~~~~~l~  241 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT----------LERAEELAEEFGG-------EAIPLDELPEALA  241 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC----------HHHHHHHHHHcCC-------cEeeHHHHHHHhc
Confidence            5889999999999999999999999998434466653          2344333333221       111111211  13


Q ss_pred             ccceeeccccC--Ccccccccccc------cceEEEecCCCC-CCHH
Q 012750          327 ECDVLIPCALG--GVLKRENAADV------KAKFIIEAANHP-TDPE  364 (457)
Q Consensus       327 ~~DIliPaA~~--~~It~~na~~i------~akiIvEgAN~p-~t~~  364 (457)
                      ++||+|-|+..  ..++.+.++..      +-.+++.-|+-. +.|+
T Consensus       242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~  288 (423)
T PRK00045        242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE  288 (423)
T ss_pred             cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence            78999999753  46666655442      346899998643 5554

>PRK06487 glycerate dehydrogenase; Provisional

Probab=95.89  E-value=0.062  Score=55.00  Aligned_cols=108  Identities=22%  Similarity=0.276  Sum_probs=70.1

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|++. |..+   ++++.                     +..+-++++. .
T Consensus       144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~-~~~~---~~~~~---------------------~~~~l~ell~-~  197 (317)
T PRK06487        144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIG-QLPG---RPARP---------------------DRLPLDELLP-Q  197 (317)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CCCC---Ccccc---------------------cccCHHHHHH-h
Confidence            4689999999999999999999999999999864 3321   11100                     0112334443 7


Q ss_pred             cceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eecccc
Q 012750          328 CDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDIY  381 (457)
Q Consensus       328 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~l  381 (457)
                      ||+++-+...     +.|+.+...++| --+++.-|=+++ ..+|- +.|++.-|. ..=|+.
T Consensus       198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf  260 (317)
T PRK06487        198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVL  260 (317)
T ss_pred             CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence            7888876643     456666666664 367888888884 44443 577766664 334443

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.88  E-value=0.32  Score=51.74  Aligned_cols=106  Identities=21%  Similarity=0.235  Sum_probs=67.0

Q ss_pred             HHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCC
Q 012750          242 LLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPS  321 (457)
Q Consensus       242 ~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~  321 (457)
                      .+++.-.++.+++|.|+|.|.+|+.+++.|.++|++-+.|++.+          .+...++.++.+      ....++-+
T Consensus       171 la~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt----------~~ra~~La~~~~------~~~~~~~~  234 (414)
T PRK13940        171 LAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT----------IEKAQKITSAFR------NASAHYLS  234 (414)
T ss_pred             HHHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHhc------CCeEecHH
Confidence            33433345899999999999999999999999998666688774          233333333321      11222223


Q ss_pred             cccc--cccceeeccccC--CcccccccccccceEEEecCCCC-CCHH
Q 012750          322 ELLA--HECDVLIPCALG--GVLKRENAADVKAKFIIEAANHP-TDPE  364 (457)
Q Consensus       322 ell~--~~~DIliPaA~~--~~It~~na~~i~akiIvEgAN~p-~t~~  364 (457)
                      ++.+  .++||+|-|+..  .+|+.+.... +-.++++-|+-. +.|+
T Consensus       235 ~l~~~l~~aDiVI~aT~a~~~vi~~~~~~~-~~~~~iDLavPRdidp~  281 (414)
T PRK13940        235 ELPQLIKKADIIIAAVNVLEYIVTCKYVGD-KPRVFIDISIPQALDPK  281 (414)
T ss_pred             HHHHHhccCCEEEECcCCCCeeECHHHhCC-CCeEEEEeCCCCCCCcc
Confidence            3322  379999999854  4666554432 345888887743 5554

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.81  E-value=0.14  Score=51.61  Aligned_cols=133  Identities=17%  Similarity=0.153  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      -+.|...+++.    .+.++++++|.|.|.|.+|+.++..|.+.|++=|.|.|.+          .++..+..+.-+.  
T Consensus       110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------~~ka~~la~~l~~--  173 (284)
T PRK12549        110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------PARAAALADELNA--  173 (284)
T ss_pred             CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHHHh--
Confidence            46677777653    3456788999999999999999999999998545577774          2333333221100  


Q ss_pred             cCCCCeecCCCccc--ccccceeeccccCCccccc----ccccc-cceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750          311 DFDGGDSMEPSELL--AHECDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHPTDPEADEILSKRGVTILPD  379 (457)
Q Consensus       311 ~~~~~~~i~~~ell--~~~~DIliPaA~~~~It~~----na~~i-~akiIvEgAN~p~t~~a~~iL~~rGI~viPD  379 (457)
                      .++.......+++.  -.++||+|-|+.-+.-...    +...+ +..+|.+-.-+|....--+.-+++|..++..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~G  249 (284)
T PRK12549        174 RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGCRTLDG  249 (284)
T ss_pred             hCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEecC
Confidence            11111111112221  1379999999754321111    11223 3457888888885333455567788776543

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.81  E-value=0.13  Score=51.97  Aligned_cols=54  Identities=22%  Similarity=0.194  Sum_probs=45.3

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ..++|.+|+...    +++++.+++|++++|+| ...||+-++.+|.++|+.|+ ++.++
T Consensus       135 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs~  189 (282)
T PRK14169        135 VVASTPYGIMAL----LDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHSK  189 (282)
T ss_pred             CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECCC
Confidence            457999988655    55679999999999999 57799999999999999987 77664

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.78  E-value=0.17  Score=55.31  Aligned_cols=156  Identities=21%  Similarity=0.228  Sum_probs=88.6

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      |.++.|++|.|+|+|++|+.+|+.|...|.+|++. |.       . .+.+...    +.       +.+.. +.++++.
T Consensus       133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~-------~-~~~~~~~----~~-------g~~~~~~l~ell~  192 (525)
T TIGR01327       133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY-DP-------Y-ISPERAE----QL-------GVELVDDLDELLA  192 (525)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CC-------C-CChhHHH----hc-------CCEEcCCHHHHHh
Confidence            45699999999999999999999999999999853 33       2 1111111    10       11222 2345553


Q ss_pred             cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-EecccccccCCceehhHHHhh
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIYANSGGVTVSYFEWVQ  396 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~laNaGGVi~S~~E~~q  396 (457)
                       .||+++-|...     +.|+++....++ -.+++.-|=+++ ..+| .+.|.+..|. ..=|+..+=--. -+.+--..
T Consensus       193 -~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~  270 (525)
T TIGR01327       193 -RADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPT-DNPLFDLD  270 (525)
T ss_pred             -hCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCC-CChhhcCC
Confidence             78999877653     455555555543 357888888884 4444 4678887775 334443332211 12111111


Q ss_pred             hc---ccCCCCHHHHHHHHHHHHHHHHHHHH
Q 012750          397 NI---QGFMWEEDKVNNELRRYMIRAFHNIK  424 (457)
Q Consensus       397 n~---~~~~w~~e~v~~~l~~~m~~~~~~v~  424 (457)
                      |.   .|..|.-++...++...+.+.+.+.+
T Consensus       271 nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~  301 (525)
T TIGR01327       271 NVIATPHLGASTREAQENVATQVAEQVLDAL  301 (525)
T ss_pred             CeEECCCccccHHHHHHHHHHHHHHHHHHHH
Confidence            21   24445445555555554555544443

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=95.77  E-value=0.12  Score=52.61  Aligned_cols=54  Identities=22%  Similarity=0.210  Sum_probs=45.2

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ..++|..||...    +++.|++++|++++|+| ...||+-++.+|.++|+.|+ ++.++
T Consensus       146 ~~PcTp~avi~l----L~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs~  200 (299)
T PLN02516        146 FLPCTPKGCLEL----LSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHSR  200 (299)
T ss_pred             CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence            357899997655    45679999999999999 57799999999999999887 77663

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.75  E-value=0.3  Score=51.84  Aligned_cols=99  Identities=20%  Similarity=0.412  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--c
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--A  325 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--~  325 (457)
                      ++.+++|.|+|.|.+|..+++.|...| .+|+ |.|.+          .+...+..++-+.       ..++.+++.  -
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~-v~~rs----------~~ra~~la~~~g~-------~~i~~~~l~~~l  238 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKIL-IANRT----------YERAEDLAKELGG-------EAVKFEDLEEYL  238 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEE-EEeCC----------HHHHHHHHHHcCC-------eEeeHHHHHHHH
Confidence            488999999999999999999999999 4555 66653          2333333332211       111112221  1


Q ss_pred             cccceeecccc--CCcccccccccc-----cceEEEecCCCC-CCHHH
Q 012750          326 HECDVLIPCAL--GGVLKRENAADV-----KAKFIIEAANHP-TDPEA  365 (457)
Q Consensus       326 ~~~DIliPaA~--~~~It~~na~~i-----~akiIvEgAN~p-~t~~a  365 (457)
                      .++||+|-|+.  ...++.+.+...     +..+|+.-|+-. ++|+.
T Consensus       239 ~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v  286 (417)
T TIGR01035       239 AEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV  286 (417)
T ss_pred             hhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence            37999999964  345666655442     234899998533 56653

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.74  E-value=0.053  Score=55.19  Aligned_cols=108  Identities=21%  Similarity=0.330  Sum_probs=63.1

Q ss_pred             HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec
Q 012750          239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM  318 (457)
Q Consensus       239 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i  318 (457)
                      ++.+...+|. +.+++|+|+|.|.+|+.+++.|...|++.|.|+|.+          .+...+..++.+.       ..+
T Consensus       166 v~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~----------~~ra~~la~~~g~-------~~~  227 (311)
T cd05213         166 VELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT----------YERAEELAKELGG-------NAV  227 (311)
T ss_pred             HHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHHcCC-------eEE
Confidence            4444333343 889999999999999999999998887666677763          3444444443221       112


Q ss_pred             CCCcccc--cccceeeccccCCcc---cccccccc--cceEEEecCCCC-CCHH
Q 012750          319 EPSELLA--HECDVLIPCALGGVL---KRENAADV--KAKFIIEAANHP-TDPE  364 (457)
Q Consensus       319 ~~~ell~--~~~DIliPaA~~~~I---t~~na~~i--~akiIvEgAN~p-~t~~  364 (457)
                      +.+++.+  .++||+|-|+.....   -..-....  +-++|++-||.+ +.|+
T Consensus       228 ~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~  281 (311)
T cd05213         228 PLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPE  281 (311)
T ss_pred             eHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchh
Confidence            2122221  368999998765433   01111111  345788877633 4443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.72  E-value=0.16  Score=51.43  Aligned_cols=54  Identities=24%  Similarity=0.217  Sum_probs=45.8

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ..++|.+|++..    +++++.+++|++++|+| ...||+-++.+|.++|+.|+ +++++
T Consensus       138 ~~PcTp~avi~l----l~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~  192 (284)
T PRK14177        138 YLPCTPYGMVLL----LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSK  192 (284)
T ss_pred             CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence            357899998764    55679999999999999 57899999999999999887 77764

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.68  E-value=0.072  Score=60.52  Aligned_cols=120  Identities=26%  Similarity=0.321  Sum_probs=88.8

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCC--CCCHHHHHHhH
Q 012750          229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNAD--GIDIHKLLAHK  303 (457)
Q Consensus       229 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~--GLDi~~L~~~~  303 (457)
                      .-||-=+..++..+++..|.+++..||++.|.|.-|-.++++|...|.   +|+ +.|++|.++...  +++..+. .+.
T Consensus       162 ~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~~~~~k~-~~a  239 (752)
T PRK07232        162 HGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENII-VCDSKGVIYKGRTEGMDEWKA-AYA  239 (752)
T ss_pred             chHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEE-EEcCCCeecCCCcccccHHHH-HHh
Confidence            357777778888889989999999999999999999999999999998   565 899999999865  3443322 111


Q ss_pred             hhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccc-cceEEEecCCCCC
Q 012750          304 DKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV-KAKFIIEAANHPT  361 (457)
Q Consensus       304 ~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i-~akiIvEgAN~p~  361 (457)
                      +.    .+     .-+-.|.+.. +||||=++.++.+|++-+... +-.||---|| |+
T Consensus       240 ~~----~~-----~~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsN-P~  287 (752)
T PRK07232        240 VD----TD-----ARTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMADNPIIFALAN-PD  287 (752)
T ss_pred             cc----CC-----CCCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEecCC-CC
Confidence            11    00     0122344444 899999999999999877775 3357777777 54

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.68  E-value=0.16  Score=51.42  Aligned_cols=52  Identities=23%  Similarity=0.247  Sum_probs=44.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .++|..|+..    ++++++.+++|++++|+| ...||+-++.+|.++|+.|+ ++++
T Consensus       138 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs  190 (284)
T PRK14190        138 LPCTPHGILE----LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHS  190 (284)
T ss_pred             CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeC
Confidence            4689888855    456679999999999999 58899999999999999987 6655

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.68  E-value=0.22  Score=49.81  Aligned_cols=130  Identities=16%  Similarity=0.213  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      .+.|...++++   ..+.+++++++.|.|.|.+|+.++..|.+.| .+|+ |.+++          .+.+.+..++....
T Consensus       105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~-v~~R~----------~~~a~~l~~~~~~~  170 (278)
T PRK00258        105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEIT-IVNRT----------VERAEELAKLFGAL  170 (278)
T ss_pred             cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHHhhhc
Confidence            45666666542   2466889999999999999999999999999 5655 77664          23333333321111


Q ss_pred             ccCCCCee-cCCCcccccccceeeccccCCccc-----ccccccc-cceEEEecCCCCCCHHHHHHHHhCCCeEec
Q 012750          310 KDFDGGDS-MEPSELLAHECDVLIPCALGGVLK-----RENAADV-KAKFIIEAANHPTDPEADEILSKRGVTILP  378 (457)
Q Consensus       310 ~~~~~~~~-i~~~ell~~~~DIliPaA~~~~It-----~~na~~i-~akiIvEgAN~p~t~~a~~iL~~rGI~viP  378 (457)
                      .   .... .+..+.+ .++||+|-|+..+.-.     +-..+.+ +-++|++-.-+|....--+.-+++|+.++.
T Consensus       171 ~---~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~  242 (278)
T PRK00258        171 G---KAELDLELQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGARTID  242 (278)
T ss_pred             c---ceeecccchhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCeecC
Confidence            0   0011 1111222 4789999998655432     1112223 246888988888433344556777877654

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=95.68  E-value=0.32  Score=53.44  Aligned_cols=180  Identities=18%  Similarity=0.196  Sum_probs=116.9

Q ss_pred             CHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHH
Q 012750          159 SNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYA  238 (457)
Q Consensus       159 s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~  238 (457)
                      +..|-..+...|++++.... |..-|-=+|++...  ---+.+.|+..   .| ++.          +.-.-||-=+..+
T Consensus       221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~n--af~iL~kyr~~---i~-~Fn----------DDiQGTaaV~lAg  283 (559)
T PTZ00317        221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNH--CFDLLERYQNK---YR-CFN----------DDIQGTGAVIAAG  283 (559)
T ss_pred             ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCcc--HHHHHHHhccC---CC-Eec----------ccchhHHHHHHHH
Confidence            45667789999999998877 54445567877542  23345667632   11 111          2223476667778


Q ss_pred             HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEECCCCeeeCCCC--CCHHHHHHhHhh
Q 012750          239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE----RGG-------KVIAVSDITGAVKNADG--IDIHKLLAHKDK  305 (457)
Q Consensus       239 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~iynp~G--LDi~~L~~~~~~  305 (457)
                      +-.+++..|.+++..||++.|.|..|-.+|++|.+    .|.       ++. +.|++|-+++..+  |+..+. .+.+.
T Consensus       284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~-~vD~~GLl~~~r~~~l~~~k~-~fa~~  361 (559)
T PTZ00317        284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFY-LVDSKGLVTTTRGDKLAKHKV-PFART  361 (559)
T ss_pred             HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCCCccccHHHH-HHhcc
Confidence            88888888999999999999999999999998873    687       565 8899999998764  332221 12111


Q ss_pred             cCCcccCCCCeecCCCccc-ccccceeecccc-CCccccccccccc----ceEEEecCCCCC
Q 012750          306 TGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANHPT  361 (457)
Q Consensus       306 ~g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~p~  361 (457)
                      ..   .-++....+-.|.+ ..+.||||=++. .+.+|++-++...    =.||---+| |+
T Consensus       362 ~~---~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSN-Pt  419 (559)
T PTZ00317        362 DI---SAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSN-PT  419 (559)
T ss_pred             cc---ccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC-CC
Confidence            00   00000011222333 457899999986 6899998776643    467777777 54

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.67  E-value=0.16  Score=51.49  Aligned_cols=54  Identities=26%  Similarity=0.266  Sum_probs=45.2

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ..++|.+||...    ++++|.+++|++++|+| ...||.-++.+|.++++.|+ ++.++
T Consensus       134 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs~  188 (287)
T PRK14173        134 LEPCTPAGVVRL----LKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHSK  188 (287)
T ss_pred             CCCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCCC
Confidence            357899888655    55679999999999999 57899999999999999887 77653

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.65  E-value=0.19  Score=50.86  Aligned_cols=53  Identities=23%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .++|..|+...    +++++.+++|++++|+| ...||+-++.+|.++++.|+ ++.++
T Consensus       137 ~PcTp~avi~l----l~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs~  190 (282)
T PRK14182        137 RPCTPAGVMRM----LDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHSR  190 (282)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence            46898888655    56669999999999999 57799999999999999887 77653

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.64  E-value=0.17  Score=51.53  Aligned_cols=53  Identities=23%  Similarity=0.202  Sum_probs=44.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .++|.+|++.    +++++|.+++|++++|+| ...||+-++.+|.++|+.|+ ++.+.
T Consensus       138 ~PcTp~aii~----lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs~  191 (297)
T PRK14186        138 RSCTPAGVMR----LLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHSR  191 (297)
T ss_pred             CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence            4689888855    456679999999999999 57799999999999999987 66553

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.62  E-value=0.025  Score=61.01  Aligned_cols=108  Identities=17%  Similarity=0.153  Sum_probs=67.8

Q ss_pred             EEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhc--C-CcccCCCCeecCCCcccc--cccc
Q 012750          255 FVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT--G-SLKDFDGGDSMEPSELLA--HECD  329 (457)
Q Consensus       255 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~--g-~~~~~~~~~~i~~~ell~--~~~D  329 (457)
                      |.|+|.|++|+++|+-|.++|.+|+ |.|.+          .+.+.+..++.  + .+..+     -+..++.+  .+||
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~-v~drt----------~~~~~~l~~~~~~g~~~~~~-----~s~~e~v~~l~~~d   65 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVS-VYNRT----------PEKTDEFLAEHAKGKKIVGA-----YSIEEFVQSLERPR   65 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEE-EEeCC----------HHHHHHHHhhccCCCCceec-----CCHHHHHhhcCCCC
Confidence            7899999999999999999999987 55543          34444444331  1 11111     12234442  2688


Q ss_pred             eeeccccCCcccccc----cccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEec
Q 012750          330 VLIPCALGGVLKREN----AADV-KAKFIIEAANHP--TDPEADEILSKRGVTILP  378 (457)
Q Consensus       330 IliPaA~~~~It~~n----a~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viP  378 (457)
                      +++-|...+....+.    ++.+ .-++|+++.|.-  .|.+..+.|.++||.++-
T Consensus        66 vIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvd  121 (467)
T TIGR00873        66 KIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVG  121 (467)
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEc
Confidence            877775543333322    2333 347999999953  355556789999998864

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.60  E-value=0.18  Score=50.94  Aligned_cols=54  Identities=19%  Similarity=0.175  Sum_probs=45.3

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ..+.|..|++..    +++++.+++|++++|+| ...||.-++.+|.++|+.|. +++++
T Consensus       137 ~~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~  191 (278)
T PRK14172        137 FLPCTPNSVITL----IKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSK  191 (278)
T ss_pred             CcCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence            357899888654    55678999999999999 57899999999999999887 77764

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.58  E-value=0.17  Score=55.39  Aligned_cols=108  Identities=30%  Similarity=0.296  Sum_probs=69.5

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      |.++.|++|.|+|+|++|+.+|+.|...|.+|++. |.+.        +.+...    ..       +.+..+.++++. 
T Consensus       135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~~--------~~~~~~----~~-------g~~~~~l~ell~-  193 (526)
T PRK13581        135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAY-DPYI--------SPERAA----QL-------GVELVSLDELLA-  193 (526)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CCCC--------ChhHHH----hc-------CCEEEcHHHHHh-
Confidence            44689999999999999999999999999999853 3321        111111    00       222334455554 


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~  375 (457)
                      .||+++-|...     +.|+.+....+| -.+++.-|-+++ +.+| .+.|++.-|.
T Consensus       194 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  250 (526)
T PRK13581        194 RADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA  250 (526)
T ss_pred             hCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence            78998877654     345555555543 367777788774 5444 3677776664

>PLN00203 glutamyl-tRNA reductase

Probab=95.54  E-value=0.52  Score=51.68  Aligned_cols=118  Identities=14%  Similarity=0.196  Sum_probs=71.9

Q ss_pred             HHHH-HHHHHHHHhCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc
Q 012750          234 GVVY-ATEALLAEHGQ-AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD  311 (457)
Q Consensus       234 Gv~~-~~~~~l~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~  311 (457)
                      +|.+ +++.+.+.++. ++.+++|.|+|.|.+|+.+++.|...|++-|-|.+.+          .+.+.++.++.+..  
T Consensus       246 Sv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------~era~~La~~~~g~--  313 (519)
T PLN00203        246 SVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------EERVAALREEFPDV--  313 (519)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------HHHHHHHHHHhCCC--
Confidence            3443 33444445664 5999999999999999999999999997434366553          23444433332111  


Q ss_pred             CCCCeecCCCccc--ccccceeeccc--cCCccccccccccc--------ceEEEecCCCC-CCHHH
Q 012750          312 FDGGDSMEPSELL--AHECDVLIPCA--LGGVLKRENAADVK--------AKFIIEAANHP-TDPEA  365 (457)
Q Consensus       312 ~~~~~~i~~~ell--~~~~DIliPaA--~~~~It~~na~~i~--------akiIvEgAN~p-~t~~a  365 (457)
                        .....+.+++.  -.++||+|-|+  ...+|+.+.++.+.        -+++++-|.-. +.|+.
T Consensus       314 --~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v  378 (519)
T PLN00203        314 --EIIYKPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACV  378 (519)
T ss_pred             --ceEeecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcccc
Confidence              00111112222  24899999886  34577877766642        25899988854 55654

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.52  E-value=0.21  Score=45.45  Aligned_cols=53  Identities=23%  Similarity=0.335  Sum_probs=43.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -+.|..|+.    ++++++|.+++|++|.|.| -..||.-++.+|.++|+.|. +++++
T Consensus         8 ~p~t~~a~~----~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~~   61 (140)
T cd05212           8 VSPVAKAVK----ELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDWK   61 (140)
T ss_pred             cccHHHHHH----HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCCC
Confidence            356777764    4556679999999999999 58899999999999999998 66664

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.50  E-value=0.052  Score=51.01  Aligned_cols=124  Identities=23%  Similarity=0.248  Sum_probs=76.0

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS  308 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~  308 (457)
                      -|+.-.+..++..++++|.++++++++|.|. |.+|+.+++.|.+.|++|+.+ +.+          .+.+.+..+.-..
T Consensus         6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~-~R~----------~~~~~~l~~~l~~   74 (194)
T cd01078           6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GRD----------LERAQKAADSLRA   74 (194)
T ss_pred             HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cCC----------HHHHHHHHHHHHh
Confidence            4777777888888888899999999999996 999999999999999988844 442          2333332221100


Q ss_pred             cccCCCCeec---CCCccc--ccccceeeccccCCcccccccc-ccc-ceEEEecCCCC-CCHHH
Q 012750          309 LKDFDGGDSM---EPSELL--AHECDVLIPCALGGVLKRENAA-DVK-AKFIIEAANHP-TDPEA  365 (457)
Q Consensus       309 ~~~~~~~~~i---~~~ell--~~~~DIliPaA~~~~It~~na~-~i~-akiIvEgAN~p-~t~~a  365 (457)
                      ..+. .....   +.+++.  -.+||++|-|+..+..+..... ..+ .++|++-+..| ++++.
T Consensus        75 ~~~~-~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~  138 (194)
T cd01078          75 RFGE-GVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEG  138 (194)
T ss_pred             hcCC-cEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCccc
Confidence            0000 00111   112221  1379999998866553222222 223 46888866655 56653

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.49  E-value=0.012  Score=52.74  Aligned_cols=108  Identities=17%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV  330 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI  330 (457)
                      ...+|.|+|.|+||.++++.|.+.|..|++|...+          .....+...      .++.....+.++++. ++|+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs----------~~sa~~a~~------~~~~~~~~~~~~~~~-~aDl   71 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS----------PASAERAAA------FIGAGAILDLEEILR-DADL   71 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH----------H-HHHHHHC--------TT-----TTGGGC-C-SE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC----------ccccccccc------ccccccccccccccc-cCCE
Confidence            34789999999999999999999999999886652          111111111      122223334455554 8999


Q ss_pred             eeccccCCccccc--cccc----ccceEEEecCCCCCCHHHHHHHHhCCCeE
Q 012750          331 LIPCALGGVLKRE--NAAD----VKAKFIIEAANHPTDPEADEILSKRGVTI  376 (457)
Q Consensus       331 liPaA~~~~It~~--na~~----i~akiIvEgAN~p~t~~a~~iL~~rGI~v  376 (457)
                      ++-|..-+.|.+-  ....    .+-++|+=-+ +-.+-+.-+-++++|..+
T Consensus        72 v~iavpDdaI~~va~~La~~~~~~~g~iVvHtS-Ga~~~~vL~p~~~~Ga~~  122 (127)
T PF10727_consen   72 VFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTS-GALGSDVLAPARERGAIV  122 (127)
T ss_dssp             EEE-S-CCHHHHHHHHHHCC--S-TT-EEEES--SS--GGGGHHHHHTT-EE
T ss_pred             EEEEechHHHHHHHHHHHHhccCCCCcEEEECC-CCChHHhhhhHHHCCCeE
Confidence            9998665555421  1111    1345666433 223444445577777654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.45  E-value=0.046  Score=55.35  Aligned_cols=52  Identities=35%  Similarity=0.428  Sum_probs=45.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .++|..|++..    +++++.+++|++++|+|-++ ||+-++.+|..+|+.|+ ++++
T Consensus       144 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs  196 (287)
T PRK14176        144 VPCTPHGVIRA----LEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHV  196 (287)
T ss_pred             CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEec
Confidence            57899988655    45678999999999999988 99999999999999987 7775

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.43  E-value=0.22  Score=50.41  Aligned_cols=82  Identities=23%  Similarity=0.247  Sum_probs=60.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhc
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT  306 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~  306 (457)
                      .++|..||+..    +++++.+++|++|+|+| ...||+-++.+|.++++.|+ ++.++-    +   |+++        
T Consensus       137 ~PcTp~avi~l----L~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~T----~---nl~~--------  196 (282)
T PRK14166        137 LPCTPLGVMKL----LKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIKT----K---DLSL--------  196 (282)
T ss_pred             cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHHH--------
Confidence            46899888665    45569999999999999 57799999999999999988 776632    1   1111        


Q ss_pred             CCcccCCCCeecCCCcccccccceeeccccC-Ccccccccc
Q 012750          307 GSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAA  346 (457)
Q Consensus       307 g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~  346 (457)
                                       ....+||+|-|+.. +.|+++.+.
T Consensus       197 -----------------~~~~ADIvIsAvGkp~~i~~~~vk  220 (282)
T PRK14166        197 -----------------YTRQADLIIVAAGCVNLLRSDMVK  220 (282)
T ss_pred             -----------------HHhhCCEEEEcCCCcCccCHHHcC
Confidence                             13478999888754 667766554

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.41  E-value=0.22  Score=50.44  Aligned_cols=83  Identities=20%  Similarity=0.286  Sum_probs=61.0

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhc
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT  306 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~  306 (457)
                      .+.|..|+...    ++++|.+++|++|+|+|- ..||+-++.+|.++|+.|+ ++.++.    +   |+++        
T Consensus       137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~T----~---~l~~--------  196 (284)
T PRK14170        137 VPCTPAGIIEL----IKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSRT----K---DLPQ--------  196 (284)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHHH--------
Confidence            57898888655    456799999999999995 6799999999999999887 776642    1   1111        


Q ss_pred             CCcccCCCCeecCCCcccccccceeeccccC-Cccccccccc
Q 012750          307 GSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAAD  347 (457)
Q Consensus       307 g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~  347 (457)
                                       ....+||+|-|+.. +.|+.+.+..
T Consensus       197 -----------------~~~~ADIvI~AvG~~~~i~~~~vk~  221 (284)
T PRK14170        197 -----------------VAKEADILVVATGLAKFVKKDYIKP  221 (284)
T ss_pred             -----------------HHhhCCEEEEecCCcCccCHHHcCC
Confidence                             12367888888754 6677666554

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.39  E-value=0.12  Score=52.32  Aligned_cols=52  Identities=15%  Similarity=0.173  Sum_probs=43.9

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+.|-+|++..++    +.+.+++|++|+|+|.|+ ||+.++.+|.++|+.|+ |+++
T Consensus       139 ~p~T~~gii~~L~----~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt-v~~~  191 (283)
T PRK14192        139 GSATPAGIMRLLK----AYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT-ICHS  191 (283)
T ss_pred             cCCcHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE-EEeC
Confidence            4678888876654    568999999999999998 99999999999999654 7776

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.39  E-value=0.19  Score=51.06  Aligned_cols=54  Identities=17%  Similarity=0.163  Sum_probs=45.2

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.+.|..|++.    ++++.+.+++|++++|+| ...||+-++.+|.++++.|+ ++.++
T Consensus       138 ~~PcTp~av~~----lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs~  192 (288)
T PRK14171        138 FIPCTALGCLA----VIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHSK  192 (288)
T ss_pred             CcCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence            35789998755    455679999999999999 57799999999999999887 77764

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.35  E-value=0.044  Score=54.23  Aligned_cols=166  Identities=19%  Similarity=0.290  Sum_probs=99.2

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccc---cc--c
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELL---AH--E  327 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell---~~--~  327 (457)
                      ++-++|.|.+|.++++.|.+.|..|| +.|.          |.+++.+.+...        ++.. +.++++   ..  -
T Consensus         2 ~iGmiGLGrMG~n~v~rl~~~ghdvV-~yD~----------n~~av~~~~~~g--------a~~a~sl~el~~~L~~pr~   62 (300)
T COG1023           2 QIGMIGLGRMGANLVRRLLDGGHDVV-GYDV----------NQTAVEELKDEG--------ATGAASLDELVAKLSAPRI   62 (300)
T ss_pred             cceeeccchhhHHHHHHHHhCCCeEE-EEcC----------CHHHHHHHHhcC--------CccccCHHHHHHhcCCCcE
Confidence            46789999999999999999999999 4554          345555555432        1111 112322   11  2


Q ss_pred             cceeeccc-cCCcccccccccccc-eEEEecCCCCCC--HHHHHHHHhCCCeEecccccccCCcee----------hhHH
Q 012750          328 CDVLIPCA-LGGVLKRENAADVKA-KFIIEAANHPTD--PEADEILSKRGVTILPDIYANSGGVTV----------SYFE  393 (457)
Q Consensus       328 ~DIliPaA-~~~~It~~na~~i~a-kiIvEgAN~p~t--~~a~~iL~~rGI~viPD~laNaGGVi~----------S~~E  393 (457)
                      +=+.+|++ +.+.+-++-++.+.+ -+|++|.|.-.-  ..-.+.|.++||.++-  .--+||+--          ..-|
T Consensus        63 vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD--~GTSGG~~G~~~G~~lMiGG~~~  140 (300)
T COG1023          63 VWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD--VGTSGGVWGAERGYCLMIGGDEE  140 (300)
T ss_pred             EEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEe--ccCCCCchhhhcCceEEecCcHH
Confidence            34678886 444444444555544 799999998863  4444689999999873  355677722          1111


Q ss_pred             Hhhhcc-----------cCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHH
Q 012750          394 WVQNIQ-----------GFMWE--------EDKVNNELRRYMIRAFHNIKGMCQT--HNCNLRMGAFT  440 (457)
Q Consensus       394 ~~qn~~-----------~~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~  440 (457)
                      -++.+.           ++-..        -.-|...+|.-|-+++.+=++.-++  +..++.+.|-+
T Consensus       141 a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v  208 (300)
T COG1023         141 AVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV  208 (300)
T ss_pred             HHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            111110           00000        1235566777777888877766654  55677776654

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.33  E-value=0.063  Score=54.17  Aligned_cols=104  Identities=19%  Similarity=0.310  Sum_probs=66.0

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccceee
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVLI  332 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIli  332 (457)
                      +|.|+|.|++|..+++.|.+.|.+|+ +.|.+          .+.+.+..+. +       .... ++.++. .+||+++
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d~~----------~~~~~~~~~~-g-------~~~~~s~~~~~-~~aDvVi   62 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQ-VFDVN----------PQAVDALVDK-G-------ATPAASPAQAA-AGAEFVI   62 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHc-C-------CcccCCHHHHH-hcCCEEE
Confidence            79999999999999999999999876 55542          3344333332 1       1111 223333 4789999


Q ss_pred             ccccCCc-----ccccc--cccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEe
Q 012750          333 PCALGGV-----LKREN--AADV-KAKFIIEAANHPT--DPEADEILSKRGVTIL  377 (457)
Q Consensus       333 PaA~~~~-----It~~n--a~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~vi  377 (457)
                      -|-....     +...+  .+.+ +-++|++-...+.  +.+..+.+.++|+.++
T Consensus        63 ~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l  117 (296)
T PRK15461         63 TMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM  117 (296)
T ss_pred             EecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence            8865542     22111  2223 3468887777653  4566678999998865

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.31  E-value=0.038  Score=55.06  Aligned_cols=105  Identities=20%  Similarity=0.268  Sum_probs=63.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD  329 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D  329 (457)
                      ++|.|+|+|++|+..++.|.+.  +.++++|+|.+          .+...+..+..+       .... +.++++ .++|
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~----------~~~a~~~a~~~~-------~~~~~~~~ell-~~~D   63 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN----------LEKAENLASKTG-------AKACLSIDELV-EDVD   63 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC----------HHHHHHHHHhcC-------CeeECCHHHHh-cCCC
Confidence            4899999999999999988775  57889888874          233333322211       1112 345666 6899


Q ss_pred             eeeccccCCccccccccc---ccceEEEecC----CCCCCHHHHHHHHhCCCeE
Q 012750          330 VLIPCALGGVLKRENAAD---VKAKFIIEAA----NHPTDPEADEILSKRGVTI  376 (457)
Q Consensus       330 IliPaA~~~~It~~na~~---i~akiIvEgA----N~p~t~~a~~iL~~rGI~v  376 (457)
                      +++.|+..... .+.+..   -+..+|++..    +-+...+..+..+++|+.+
T Consensus        64 vVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l  116 (265)
T PRK13304         64 LVVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKI  116 (265)
T ss_pred             EEEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence            99999865443 232222   2345666532    2222233445677788654

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.30  E-value=0.044  Score=59.53  Aligned_cols=174  Identities=14%  Similarity=0.124  Sum_probs=100.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh---cCCcccCCCCeecCCCccccc--c
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK---TGSLKDFDGGDSMEPSELLAH--E  327 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~---~g~~~~~~~~~~i~~~ell~~--~  327 (457)
                      .+|.++|.|++|+.+|+-|.++|.+|+ |.|.+          .+...++.+.   .|. ..+..  .-++.++.+.  .
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~NRt----------~~k~~~l~~~~~~~Ga-~~~~~--a~s~~e~v~~l~~   72 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKKEGN-LPLYG--FKDPEDFVLSIQK   72 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEE-EECCC----------HHHHHHHHHhhhhcCC-ccccc--CCCHHHHHhcCCC
Confidence            369999999999999999999999987 66663          3333333321   121 00000  0133444432  5


Q ss_pred             cceeeccccCCccccc----ccccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEeccccc------ccCCcee-----
Q 012750          328 CDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPDIYA------NSGGVTV-----  389 (457)
Q Consensus       328 ~DIliPaA~~~~It~~----na~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~la------NaGGVi~-----  389 (457)
                      ||+++-|-..+...++    -.+.+ +-++|+++.|..  .|.+..+.++++|+.++=--+.      -.|-.+.     
T Consensus        73 ~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~  152 (493)
T PLN02350         73 PRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSF  152 (493)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCH
Confidence            8888877543322222    22333 458999999985  4666678899999988632221      1121111     


Q ss_pred             hhHHHhhhc----cc-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHH
Q 012750          390 SYFEWVQNI----QG-------FMW--------EEDKVNNELRRYMIRAFHNIKGMCQT-HNCNLRMGAFT  440 (457)
Q Consensus       390 S~~E~~qn~----~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~  440 (457)
                      ..||-++.+    ..       ..|        --.-|+..++..+...+.+.+..+++ .|+++.+.+.+
T Consensus       153 ~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~v  223 (493)
T PLN02350        153 EAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEV  223 (493)
T ss_pred             HHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            112222211    00       011        01234566666677777888888887 58887776655

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=95.27  E-value=0.26  Score=51.41  Aligned_cols=54  Identities=24%  Similarity=0.244  Sum_probs=45.3

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.+.|..|+.    +++++.+.+++|++|+|+| ...||+-++.+|.++++.|+ ++.++
T Consensus       210 f~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs~  264 (364)
T PLN02616        210 FVPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSR  264 (364)
T ss_pred             CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCCC
Confidence            4579999975    4556679999999999999 57899999999999999887 77653

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.26  E-value=0.3  Score=51.87  Aligned_cols=105  Identities=24%  Similarity=0.311  Sum_probs=68.0

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.+|.|+|+.|+|+|++|+.+|+.+...|.+|++. |....                ..      ..+.+.. +-++++.
T Consensus       146 ~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~-d~~~~----------------~~------~~~~~~~~~l~ell~  202 (409)
T PRK11790        146 SFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFY-DIEDK----------------LP------LGNARQVGSLEELLA  202 (409)
T ss_pred             cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-CCCcc----------------cc------cCCceecCCHHHHHh
Confidence            35699999999999999999999999999999853 33210                00      0011111 3345553


Q ss_pred             cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT  375 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~  375 (457)
                       .||+++-+...     +.|+++....+| -.+++.-|=+++ +.+| .+.|.++-|.
T Consensus       203 -~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  259 (409)
T PRK11790        203 -QSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLA  259 (409)
T ss_pred             -hCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence             68888776543     345555555554 467787887774 4444 3677777664

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.26  E-value=0.071  Score=53.10  Aligned_cols=121  Identities=20%  Similarity=0.181  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-----------EEEEEECCCCeeeCCCC-CCHHH
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-----------KVIAVSDITGAVKNADG-IDIHK  298 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-----------kVVaVsD~~G~iynp~G-LDi~~  298 (457)
                      ||-=+..++-.+++..|.+++..||++.|.|..|-+++++|.+.+.           +++ +.|++|-+++... ++...
T Consensus         4 TaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~-~vD~~Gll~~~r~~l~~~~   82 (254)
T cd00762           4 TASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW-XVDRKGLLVKNRKETCPNE   82 (254)
T ss_pred             hHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE-EECCCCeEeCCCCccCHHH
Confidence            5555666778888888999999999999999999999999987654           455 8999999998663 44322


Q ss_pred             HH--HhHhhcCCcccCCCCeecCCCccc-ccccceeecccc-CCccccccccccc----ceEEEecCCCCC
Q 012750          299 LL--AHKDKTGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANHPT  361 (457)
Q Consensus       299 L~--~~~~~~g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~p~  361 (457)
                      ..  ++.+.        .....+-.|.+ ..+.||||=++. .+.+|++-++...    =.||---+| |+
T Consensus        83 ~~~~~~~~~--------~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN-Pt  144 (254)
T cd00762          83 YHLARFANP--------ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSN-PT  144 (254)
T ss_pred             HHHHHHcCc--------ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCC-cC
Confidence            11  11111        01111223344 458999999887 8999998776653    467777777 54

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=95.24  E-value=0.29  Score=50.85  Aligned_cols=53  Identities=21%  Similarity=0.166  Sum_probs=44.7

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..+.|..||...+    ++.+.+++|++++|+| ...||+-++.+|.++++.|. ++.+
T Consensus       193 ~~PCTp~avi~LL----~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs  246 (345)
T PLN02897        193 FVSCTPKGCVELL----IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHA  246 (345)
T ss_pred             CcCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcC
Confidence            3578999986654    5679999999999999 57799999999999999987 6655

>PRK12862 malic enzyme; Reviewed

Probab=95.23  E-value=0.12  Score=58.88  Aligned_cols=120  Identities=29%  Similarity=0.308  Sum_probs=89.5

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCC--CCCHHHHHHhH
Q 012750          229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNAD--GIDIHKLLAHK  303 (457)
Q Consensus       229 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~--GLDi~~L~~~~  303 (457)
                      .-||-=+..++..+++..|++++..||++.|.|.-|-.++++|...|.   +|+ +.|++|.++...  +++..+. .+.
T Consensus       170 ~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~l~~~~~-~~a  247 (763)
T PRK12862        170 HGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIW-VTDIKGVVYEGRTELMDPWKA-RYA  247 (763)
T ss_pred             ccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEE-EEcCCCeeeCCCCccccHHHH-HHh
Confidence            347777777888889989999999999999999999999999999998   565 899999999865  3543332 122


Q ss_pred             hhcCCcccCCCCeecCCCcccccccceeeccccCCccccccccccc-ceEEEecCCCCC
Q 012750          304 DKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT  361 (457)
Q Consensus       304 ~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~  361 (457)
                      +.+    +.     -+-.|.+.. +||||=++..+.+|++-+.... =.||---|| |+
T Consensus       248 ~~~----~~-----~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsN-P~  295 (763)
T PRK12862        248 QKT----DA-----RTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMAPRPLIFALAN-PT  295 (763)
T ss_pred             hhc----cc-----CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEeCCC-Cc
Confidence            211    10     122344544 8999999999999998877763 357777777 54

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.21  E-value=0.058  Score=54.43  Aligned_cols=169  Identities=15%  Similarity=0.199  Sum_probs=93.8

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc--ccce
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH--ECDV  330 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~--~~DI  330 (457)
                      +|.++|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+ .+       .... +++++.+.  .+|+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~-~g-------~~~~~s~~~~~~~~~~adv   62 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVV-GYDVN----------QEAVDVAGK-LG-------ITARHSLEELVSKLEAPRT   62 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEE-EEECC----------HHHHHHHHH-CC-------CeecCCHHHHHHhCCCCCE
Confidence            68999999999999999999999987 56653          233333322 12       1111 33444432  3788


Q ss_pred             eeccccCCcccccc----cccc-cceEEEecCCC-C-CCHHHHHHHHhCCCeEeccccc------ccCC-cee----hhH
Q 012750          331 LIPCALGGVLKREN----AADV-KAKFIIEAANH-P-TDPEADEILSKRGVTILPDIYA------NSGG-VTV----SYF  392 (457)
Q Consensus       331 liPaA~~~~It~~n----a~~i-~akiIvEgAN~-p-~t~~a~~iL~~rGI~viPD~la------NaGG-Vi~----S~~  392 (457)
                      ++-|-......++-    .+.+ +-++|++-++. | .+.+..+.+.++|+.++---+.      -.|= +++    ..|
T Consensus        63 Vi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~  142 (299)
T PRK12490         63 IWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIY  142 (299)
T ss_pred             EEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHH
Confidence            88775544222221    2223 23688888776 4 3456667899999987632111      1121 111    122


Q ss_pred             HHhhhc----cc----CCC-C-------HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Q 012750          393 EWVQNI----QG----FMW-E-------EDKVNNELRRYMIRAFHNIKGMCQTHN--CNLRMGAFTL  441 (457)
Q Consensus       393 E~~qn~----~~----~~w-~-------~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~  441 (457)
                      +.++.+    ..    .++ .       -+-++..+...+..++.+-+..+++.+  +++.+...++
T Consensus       143 ~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~  209 (299)
T PRK12490        143 DRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW  209 (299)
T ss_pred             HHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence            333321    11    011 0       122344445555667777788888887  7776665544

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.16  E-value=0.59  Score=49.65  Aligned_cols=31  Identities=32%  Similarity=0.416  Sum_probs=27.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|.||..+|..|.++|..|++ .|.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-~D~   34 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIG-VDI   34 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEE-EeC
Confidence            6899999999999999999999999985 454

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.09  E-value=0.28  Score=50.00  Aligned_cols=53  Identities=25%  Similarity=0.288  Sum_probs=43.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~  285 (457)
                      .++|..|++..    +++++.+++|++|+|+| ...||+-++.+|.++    ++.|. ++.++
T Consensus       137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~  194 (297)
T PRK14167        137 KPCTPHGIQKL----LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSR  194 (297)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCC
Confidence            47899888655    55679999999999999 577999999999988    78776 77653

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=95.03  E-value=0.083  Score=52.84  Aligned_cols=170  Identities=13%  Similarity=0.136  Sum_probs=91.3

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeec
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIP  333 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliP  333 (457)
                      +|.|+|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+. +...      .-+..+++ .+||+++-
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr~----------~~~~~~~~~~-g~~~------~~~~~~~~-~~aDivi~   61 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTIG----------PEVADELLAA-GAVT------AETARQVT-EQADVIFT   61 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-CCcc------cCCHHHHH-hcCCEEEE
Confidence            48899999999999999999999987 44542          2333332221 2110      01222333 48999999


Q ss_pred             cccCCcccccc-------cccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEeccccc------ccCC--ceeh----h
Q 012750          334 CALGGVLKREN-------AADV-KAKFIIEAANHPT--DPEADEILSKRGVTILPDIYA------NSGG--VTVS----Y  391 (457)
Q Consensus       334 aA~~~~It~~n-------a~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~la------NaGG--Vi~S----~  391 (457)
                      |..........       ...+ .-++|+...+...  +.+..+.+.++|+.++.--+.      -.|-  ++++    .
T Consensus        62 ~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~  141 (291)
T TIGR01505        62 MVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAV  141 (291)
T ss_pred             ecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHH
Confidence            86543221111       1222 3468887665542  234556788999876643221      1111  1111    1


Q ss_pred             HHHhhhc----cc-CC-C---CHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750          392 FEWVQNI----QG-FM-W---EED----KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG  442 (457)
Q Consensus       392 ~E~~qn~----~~-~~-w---~~e----~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  442 (457)
                      ++.+..+    .. .. .   ...    -++..+.......+.+.+..+++.|+++.+....+.
T Consensus       142 ~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~  205 (291)
T TIGR01505       142 FDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR  205 (291)
T ss_pred             HHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            1222111    10 00 0   111    122333333445577888889999999888776554

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.00  E-value=0.42  Score=48.51  Aligned_cols=53  Identities=19%  Similarity=0.168  Sum_probs=43.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~  285 (457)
                      .+.|..||+..    ++++|.+++|++|+|+| ...||+-++.+|.++    ++.|+ ++.++
T Consensus       133 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs~  190 (287)
T PRK14181        133 IPCTPAGIIEL----LKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHSQ  190 (287)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCCC
Confidence            46899988665    55669999999999999 577999999999998    78777 77653

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.96  E-value=0.36  Score=48.91  Aligned_cols=53  Identities=19%  Similarity=0.167  Sum_probs=44.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH--CCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHE--RGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~--~GakVVaVsD~~  285 (457)
                      .++|..|++..+    +++|.+++|++++|+| ...||+-++.+|.+  +++.|. ++.++
T Consensus       138 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt-vchs~  193 (284)
T PRK14193        138 LPCTPRGIVHLL----RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT-LCHTG  193 (284)
T ss_pred             CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE-EeCCC
Confidence            478999986654    5679999999999999 57899999999998  788886 77663

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.88  E-value=0.086  Score=49.02  Aligned_cols=54  Identities=19%  Similarity=0.174  Sum_probs=39.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .-+.|..|++..+    ++.+.+++|++++|+|-+ .||+-++.+|.++|+.|. +++++
T Consensus        15 ~~PcTp~aii~lL----~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~~   69 (160)
T PF02882_consen   15 FVPCTPLAIIELL----EYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHSK   69 (160)
T ss_dssp             S--HHHHHHHHHH----HHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-TT
T ss_pred             CcCCCHHHHHHHH----HhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccCC
Confidence            3568988886654    557899999999999976 599999999999999998 67764

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.87  E-value=0.37  Score=48.49  Aligned_cols=130  Identities=18%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHHHhCC--CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750          231 TGRGVVYATEALLAEHGQ--AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS  308 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~--~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~  308 (457)
                      -+.|...+++    +.+.  ++++++++|.|.|.+|+.++..|.+.|++-|.|.+++          .+...++.++-+.
T Consensus       106 D~~G~~~~l~----~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt----------~~ka~~La~~~~~  171 (282)
T TIGR01809       106 DWDGIAGALA----NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN----------PDKLSRLVDLGVQ  171 (282)
T ss_pred             CHHHHHHHHH----hhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC----------HHHHHHHHHHhhh
Confidence            4567777765    3452  5789999999999999999999999998655577763          2333333332111


Q ss_pred             cccCCCCeecCC-Cccc--ccccceeeccccCC-cccccccc---------cc-cceEEEecCCCCC-CHHHHHHHHhCC
Q 012750          309 LKDFDGGDSMEP-SELL--AHECDVLIPCALGG-VLKRENAA---------DV-KAKFIIEAANHPT-DPEADEILSKRG  373 (457)
Q Consensus       309 ~~~~~~~~~i~~-~ell--~~~~DIliPaA~~~-~It~~na~---------~i-~akiIvEgAN~p~-t~~a~~iL~~rG  373 (457)
                      .   .....++. +++.  -.++|++|-|+.-+ .++.+...         ++ +..++.+...+|. || --+.-+++|
T Consensus       172 ~---~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~-ll~~A~~~G  247 (282)
T TIGR01809       172 V---GVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTP-LVAIVSAAG  247 (282)
T ss_pred             c---CcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCH-HHHHHHHCC
Confidence            0   00111111 2221  14789999987543 33333221         11 2457788887774 44 334445566


Q ss_pred             CeEec
Q 012750          374 VTILP  378 (457)
Q Consensus       374 I~viP  378 (457)
                      ..++.
T Consensus       248 ~~~~~  252 (282)
T TIGR01809       248 WRVIS  252 (282)
T ss_pred             CEEEC
Confidence            65543

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.87  E-value=0.37  Score=48.90  Aligned_cols=53  Identities=23%  Similarity=0.195  Sum_probs=43.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH----CCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHE----RGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~----~GakVVaVsD~~  285 (457)
                      .++|..|++..    +++++.+++|++++|+| ...||+-++.+|.+    +++.|. +++++
T Consensus       137 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs~  194 (286)
T PRK14184        137 RPCTPAGVMTL----LERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHSR  194 (286)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeCC
Confidence            47899888654    55679999999999999 57799999999998    788887 66653

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.86  E-value=0.091  Score=54.13  Aligned_cols=116  Identities=23%  Similarity=0.261  Sum_probs=74.7

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc
Q 012750          246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA  325 (457)
Q Consensus       246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~  325 (457)
                      +|.++.|+|+.|.|+|.+|+.+|+.+.--|.+|+ ..|.       ... .+...+     .      +.+.++.++++.
T Consensus       140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~~-------~~~-~~~~~~-----~------~~~y~~l~ell~  199 (324)
T COG1052         140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYDR-------SPN-PEAEKE-----L------GARYVDLDELLA  199 (324)
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EECC-------CCC-hHHHhh-----c------CceeccHHHHHH
Confidence            4567999999999999999999999998889998 3443       332 111110     0      123344455554


Q ss_pred             cccceeeccccC-----Ccccccccccccc-eEEEecCCCCC-CH-HHHHHHHhCCCe-Eeccccc
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVKA-KFIIEAANHPT-DP-EADEILSKRGVT-ILPDIYA  382 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~a-kiIvEgAN~p~-t~-~a~~iL~~rGI~-viPD~la  382 (457)
                       .+||++-....     +.||.+-..++|- -+++.-|=+++ .. +..+.|++.-|. ..=|+.-
T Consensus       200 -~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e  264 (324)
T COG1052         200 -ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFE  264 (324)
T ss_pred             -hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecC
Confidence             78988766533     3555555555543 68888888885 43 335788887775 3334333

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.85  E-value=0.25  Score=51.04  Aligned_cols=31  Identities=32%  Similarity=0.623  Sum_probs=27.5

Q ss_pred             eEEEEecChHHHHHHHHHHHCC----CEEEEEECC
Q 012750          254 TFVIQGFGNVGSWAARLIHERG----GKVIAVSDI  284 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~  284 (457)
                      +|+|.|||.+|+.+++.|.+.+    ..|++|.|.
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~   35 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL   35 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC
Confidence            5899999999999999998764    899999885

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=94.84  E-value=0.066  Score=53.40  Aligned_cols=124  Identities=26%  Similarity=0.259  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC------EEEEEECCCCeeeCCCCCCHHHHH
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER----GG------KVIAVSDITGAVKNADGIDIHKLL  300 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga------kVVaVsD~~G~iynp~GLDi~~L~  300 (457)
                      ||-=+..++-.+++..|.+|+..||++.|.|..|-.++++|.+.    |.      +=+-+.|++|-+++.. -|+..-.
T Consensus         4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~   82 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHK   82 (255)
T ss_dssp             HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhh
Confidence            44455667778888889999999999999999999999999876    87      3344899999999865 3333332


Q ss_pred             HhHhh-cCCcccCCCCeecCCCccc-ccccceeeccc-cCCccccccccccc----ceEEEecCCCCC
Q 012750          301 AHKDK-TGSLKDFDGGDSMEPSELL-AHECDVLIPCA-LGGVLKRENAADVK----AKFIIEAANHPT  361 (457)
Q Consensus       301 ~~~~~-~g~~~~~~~~~~i~~~ell-~~~~DIliPaA-~~~~It~~na~~i~----akiIvEgAN~p~  361 (457)
                      +.+.+ .....     ...+-.|.+ ..+.||||=++ .++.+|++-++...    -.||---+| |+
T Consensus        83 ~~~a~~~~~~~-----~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSN-Pt  144 (255)
T PF03949_consen   83 KPFARKTNPEK-----DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSN-PT  144 (255)
T ss_dssp             HHHHBSSSTTT-------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SS-SC
T ss_pred             hhhhccCcccc-----cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCC-CC
Confidence            22221 11111     011222333 45779999999 78999999887764    468888888 54

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.79  E-value=0.15  Score=52.42  Aligned_cols=32  Identities=38%  Similarity=0.687  Sum_probs=29.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC--CEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG--GKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~  284 (457)
                      .||+|=|||-+|+.+++.+.+.+  .+||||.|.
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~   35 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL   35 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            58999999999999999998875  899999985

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.76  E-value=0.055  Score=57.63  Aligned_cols=159  Identities=19%  Similarity=0.232  Sum_probs=81.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC----------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EP  320 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~  320 (457)
                      ..+|+|.|+|+||+.+++.|.++          +.+|++|+|++..-.  .+++                +++.... +.
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~----------------~~~~~~~~d~   64 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVD----------------LPGILLTTDP   64 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCC----------------CcccceeCCH
Confidence            46899999999999999988653          468999999863211  1111                1111111 33


Q ss_pred             Ccccc-cccceeeccccCCccccccc-ccccc--eEEEecCCCCC-CHHH---HHHHHhCCCeEecccccccCCc-eehh
Q 012750          321 SELLA-HECDVLIPCALGGVLKRENA-ADVKA--KFIIEAANHPT-DPEA---DEILSKRGVTILPDIYANSGGV-TVSY  391 (457)
Q Consensus       321 ~ell~-~~~DIliPaA~~~~It~~na-~~i~a--kiIvEgAN~p~-t~~a---~~iL~~rGI~viPD~laNaGGV-i~S~  391 (457)
                      ++++. .+.|+++.|..+.....+-+ .-+++  -+|++  |-+. ...+   .+.-+++|+.+.=. .+-+||+ +...
T Consensus        65 ~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta--NK~~~a~~~~eL~~lA~~~gv~l~fE-asV~ggiPii~~  141 (426)
T PRK06349         65 EELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA--NKALLAVHGAELFAAAEEKGVDLYFE-AAVAGGIPIIKA  141 (426)
T ss_pred             HHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc--CHHHHHHHHHHHHHHHHHcCCcEEEE-EEeeccCchHHH
Confidence            56664 57999999964432222222 12333  34443  4332 2222   34556788865421 1122332 1111


Q ss_pred             H-HHhhh-----ccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          392 F-EWVQN-----IQG-FMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       392 ~-E~~qn-----~~~-~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                      + +.+..     +++ +.=+-.-+..++.+. ...|.+++..|++.|.
T Consensus       142 l~~~l~~~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~Gy  188 (426)
T PRK06349        142 LREGLAANRITRVMGIVNGTTNYILTKMTEE-GLSFEDALKEAQRLGY  188 (426)
T ss_pred             HHhhcccCCeeEEEEEEeCcHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence            1 11110     000 000122344444321 4479999999998875

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.63  E-value=0.48  Score=51.98  Aligned_cols=132  Identities=18%  Similarity=0.240  Sum_probs=77.9

Q ss_pred             chHHHHHHHHHHHHHH------hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhH
Q 012750          230 ATGRGVVYATEALLAE------HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHK  303 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~------~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~  303 (457)
                      --+.|+..+++..+..      .+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.+.+          .+...+..
T Consensus       351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR~----------~e~a~~la  419 (529)
T PLN02520        351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANRT----------YERAKELA  419 (529)
T ss_pred             ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHH
Confidence            3467888888764422      2456899999999999999999999999999877 66653          33443333


Q ss_pred             hhcC-CcccCCCCeecCCCcccccccceeeccccCCcccccc-----cccc-cceEEEecCCCCC-CHHHHHHHHhCCCe
Q 012750          304 DKTG-SLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKREN-----AADV-KAKFIIEAANHPT-DPEADEILSKRGVT  375 (457)
Q Consensus       304 ~~~g-~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~n-----a~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~  375 (457)
                      ++-+ ....+.     +..+.+..++||+|-|+.-+.-...+     ...+ ...+|.+-.-+|. ||= -+.-+++|..
T Consensus       420 ~~l~~~~~~~~-----~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~l-l~~A~~~G~~  493 (529)
T PLN02520        420 DAVGGQALTLA-----DLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRL-LREAEESGAI  493 (529)
T ss_pred             HHhCCceeeHh-----HhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHH-HHHHHHCCCe
Confidence            3211 111110     01122334689999777544321111     1112 3467888888884 443 3344556655


Q ss_pred             Eec
Q 012750          376 ILP  378 (457)
Q Consensus       376 viP  378 (457)
                      ++.
T Consensus       494 ~~~  496 (529)
T PLN02520        494 IVS  496 (529)
T ss_pred             EeC
Confidence            543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.58  E-value=0.1  Score=56.94  Aligned_cols=35  Identities=20%  Similarity=0.151  Sum_probs=30.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ..+.+|+|.|.|.+|..++..+...|++|+ +.|.+
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D~~  197 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFDTR  197 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            568999999999999999999999999866 66763

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.54  E-value=0.56  Score=47.77  Aligned_cols=54  Identities=22%  Similarity=0.183  Sum_probs=44.0

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~  285 (457)
                      -.++|..||...    +++++.+++|++|+|+| ...||+-++.+|.++    ++.|+ ++.++
T Consensus       136 ~~PcTp~av~~l----L~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~  194 (293)
T PRK14185        136 FVSATPNGILEL----LKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHSR  194 (293)
T ss_pred             CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecCC
Confidence            357899888655    55678999999999999 577999999999988    57776 77664

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=94.47  E-value=0.14  Score=49.07  Aligned_cols=62  Identities=26%  Similarity=0.183  Sum_probs=49.1

Q ss_pred             CcchHHHHHHHHHHHH-----HHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeC
Q 012750          228 EAATGRGVVYATEALL-----AEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKN  290 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l-----~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iyn  290 (457)
                      .+.|.+||+..++..=     +..|.+++|++++|+| ...||+-++.+|.++|+.|. ++|++|..+-
T Consensus        33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~  100 (197)
T cd01079          33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVF  100 (197)
T ss_pred             cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCccccc
Confidence            4789999977766430     0124589999999999 56799999999999999998 9999886553

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.47  E-value=0.58  Score=49.33  Aligned_cols=120  Identities=17%  Similarity=0.247  Sum_probs=67.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc-----C---CCCee-cC--CC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD-----F---DGGDS-ME--PS  321 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~-----~---~~~~~-i~--~~  321 (457)
                      ++|+|+|.|.||..+|..|. .|..|+ +.|.+          .+.+.+..+..-.+.+     +   ..... .+  ..
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~d----------~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~   68 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALDIL----------PSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKN   68 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEE-EEECC----------HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchh
Confidence            37999999999999997776 499988 45653          2222222211000000     0   00111 11  11


Q ss_pred             cccccccceeeccccCCccccc-------cc-------ccc--cceEEEecCCCC-CCHHHHHHHHhCCCeEeccccccc
Q 012750          322 ELLAHECDVLIPCALGGVLKRE-------NA-------ADV--KAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANS  384 (457)
Q Consensus       322 ell~~~~DIliPaA~~~~It~~-------na-------~~i--~akiIvEgAN~p-~t~~a~~iL~~rGI~viPD~laNa  384 (457)
                      +. -.+||+++.|-.+. ++.+       .+       .++  ..-+|.+..=.| +|.+..+.+.++|+.+.|.++...
T Consensus        69 ~~-~~~ad~vii~Vpt~-~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G  146 (388)
T PRK15057         69 EA-YRDADYVIIATPTD-YDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREG  146 (388)
T ss_pred             hh-hcCCCEEEEeCCCC-CccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCC
Confidence            22 25899999986654 2221       11       111  234445655555 566777788889999999988655


Q ss_pred             CC
Q 012750          385 GG  386 (457)
Q Consensus       385 GG  386 (457)
                      =-
T Consensus       147 ~a  148 (388)
T PRK15057        147 KA  148 (388)
T ss_pred             cc
Confidence            33

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=94.45  E-value=0.16  Score=50.74  Aligned_cols=106  Identities=16%  Similarity=0.277  Sum_probs=64.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      ++|.|+|+|.+|+.+|+.|.+.|.+|+ +.|.+          .+.+.+..+. +       .... +.++++ .+||++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~~----------~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d~v   62 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDRN----------PEAVAEVIAA-G-------AETASTAKAVA-EQCDVI   62 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-C-------CeecCCHHHHH-hcCCEE
Confidence            579999999999999999999999886 44542          2233222221 1       1111 223444 479999


Q ss_pred             eccccCCccccc-------ccccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEec
Q 012750          332 IPCALGGVLKRE-------NAADV-KAKFIIEAANHPT--DPEADEILSKRGVTILP  378 (457)
Q Consensus       332 iPaA~~~~It~~-------na~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viP  378 (457)
                      +-|.....-...       -.+.+ +-++|+.-.+...  +.+..+.+.++|+.++.
T Consensus        63 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d  119 (296)
T PRK11559         63 ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD  119 (296)
T ss_pred             EEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence            998764321111       12233 3478887666542  23455678888987643

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=94.40  E-value=0.43  Score=49.50  Aligned_cols=32  Identities=28%  Similarity=0.558  Sum_probs=27.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC----CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER----GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~----GakVVaVsD~  284 (457)
                      .+|+|.|||.+|+.+.+.|.+.    ..+|++|-|.
T Consensus         2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~   37 (336)
T PRK13535          2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL   37 (336)
T ss_pred             eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            4799999999999999999874    5789988764

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.23  E-value=0.13  Score=48.63  Aligned_cols=121  Identities=25%  Similarity=0.387  Sum_probs=56.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC---------ee-eCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG---------AV-KNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSE  322 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G---------~i-ynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~e  322 (457)
                      ++|+|.|.|-||..+|-.|+++|.+|+++ |.+-         .. +.+.|  ++++++...+.+.+.-      .++.+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~-D~~~~~v~~l~~g~~p~~E~~--l~~ll~~~~~~~~l~~------t~~~~   71 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV-DIDEEKVEALNNGELPIYEPG--LDELLKENVSAGRLRA------TTDIE   71 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE--S-HHHHHHHHTTSSSS-CTT--HHHHHHHHHHTTSEEE------ESEHH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEE-eCChHHHHHHhhccccccccc--hhhhhccccccccchh------hhhhh
Confidence            58999999999999999999999999964 5532         11 11222  3344433332233211      11111


Q ss_pred             ccccccceeeccccCCccccccc----------ccc------cceEEEecCCCC-CCH-HHHHHHHhCC-------CeEe
Q 012750          323 LLAHECDVLIPCALGGVLKRENA----------ADV------KAKFIIEAANHP-TDP-EADEILSKRG-------VTIL  377 (457)
Q Consensus       323 ll~~~~DIliPaA~~~~It~~na----------~~i------~akiIvEgAN~p-~t~-~a~~iL~~rG-------I~vi  377 (457)
                      -.-.+||+++=|-... .++++.          +.+      .+-+|.|..=.| +|. ....+|++.+       +.+.
T Consensus        72 ~ai~~adv~~I~VpTP-~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~  150 (185)
T PF03721_consen   72 EAIKDADVVFICVPTP-SDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYS  150 (185)
T ss_dssp             HHHHH-SEEEE----E-BETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE-
T ss_pred             hhhhccceEEEecCCC-ccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEEC
Confidence            1123788888775322 222221          111      344566655545 444 3557888766       6789


Q ss_pred             cccccc
Q 012750          378 PDIYAN  383 (457)
Q Consensus       378 PD~laN  383 (457)
                      |+++.-
T Consensus       151 PErl~~  156 (185)
T PF03721_consen  151 PERLRE  156 (185)
T ss_dssp             -----T
T ss_pred             CCccCC
Confidence            998873

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08328 hypothetical protein; Provisional

Probab=94.22  E-value=0.039  Score=53.90  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=65.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh-cCCcccCCCCeecCCCccccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK-TGSLKDFDGGDSMEPSELLAHEC  328 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~-~g~~~~~~~~~~i~~~ell~~~~  328 (457)
                      +++.+|+|.|.|-+|+.+++.|...|..=+.+.|.+       =++...|-+..-- ...+-..+..+ .....+.....
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D-------~ve~sNL~Rq~l~~~~dvG~~~k~~-~a~~~l~~~np   96 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ-------TPELSNLNRQILHWEEDLGKNPKPL-SAKWKLERFNS   96 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-------ccChhhhccccccChhhcCchHHHH-HHHHHHHHhCC
Confidence            677899999999999999999999998655566653       2333333221000 00000000000 00011223344


Q ss_pred             ceeeccccCCcccccccccc--cceEEEecCCCCCCHH-HHHHHHhCCCeEe
Q 012750          329 DVLIPCALGGVLKRENAADV--KAKFIIEAANHPTDPE-ADEILSKRGVTIL  377 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~~-a~~iL~~rGI~vi  377 (457)
                      |+-|.+ ....++++|++.+  ++.+|+.+.-++.+.. ..+...+.||.++
T Consensus        97 ~v~v~~-~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i  147 (231)
T PRK08328         97 DIKIET-FVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV  147 (231)
T ss_pred             CCEEEE-EeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence            555555 2234566776553  6778888765553332 2346678887765

>PRK08223 hypothetical protein; Validated

Probab=94.09  E-value=0.13  Score=52.27  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=31.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+..+|+|+|.|-+|+.+++.|...|..=+.+.|.+
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            688999999999999999999999998666677764

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.09  E-value=0.68  Score=47.28  Aligned_cols=53  Identities=19%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~  285 (457)
                      .++|..||...    ++++|.+++|++|+|+| ...||+-++.+|.++    ++.|. ++.++
T Consensus       141 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs~  198 (297)
T PRK14168        141 LPCTPAGIQEM----LVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHTR  198 (297)
T ss_pred             cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecCC
Confidence            47898888655    45679999999999999 578999999999988    67776 66553

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=94.07  E-value=0.14  Score=49.59  Aligned_cols=89  Identities=25%  Similarity=0.273  Sum_probs=56.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--ccccce
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--AHECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--~~~~DI  330 (457)
                      ++++|.|.||+|+.+++.|...|..|+ |+.+++         ++++....+..+.     .   ++..+..  ...|||
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r~---------~~~~~a~a~~l~~-----~---i~~~~~~dA~~~aDV   63 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSRG---------PKALAAAAAALGP-----L---ITGGSNEDAAALADV   63 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEE-EecCCC---------hhHHHHHHHhhcc-----c---cccCChHHHHhcCCE
Confidence            578999999999999999999999998 776654         3344433332211     1   2222222  225899


Q ss_pred             eeccccCCccc---ccccccccceEEEecCCC
Q 012750          331 LIPCALGGVLK---RENAADVKAKFIIEAANH  359 (457)
Q Consensus       331 liPaA~~~~It---~~na~~i~akiIvEgAN~  359 (457)
                      ++.+-.-..+.   .+-.+.++-|+|+...|.
T Consensus        64 VvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp   95 (211)
T COG2085          64 VVLAVPFEAIPDVLAELRDALGGKIVIDATNP   95 (211)
T ss_pred             EEEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence            98875433222   222233556999999884

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.04  E-value=0.061  Score=45.80  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=30.7

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++++|++|.|+|.|+||..-++.|.+.|++|+-++..
T Consensus         3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            4689999999999999999999999999999866654

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.03  E-value=1.2  Score=45.27  Aligned_cols=131  Identities=21%  Similarity=0.228  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      |.|+..++++.  ..+.+.+|++++|.|-|-.++.++..|.+.|+ +|+ |.+++          .+...++.+..+...
T Consensus       108 ~~G~~~~L~~~--~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~-V~NRt----------~~ra~~La~~~~~~~  174 (283)
T COG0169         108 GIGFLRALKEF--GLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRIT-VVNRT----------RERAEELADLFGELG  174 (283)
T ss_pred             HHHHHHHHHhc--CCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHHhhhcc
Confidence            55665554432  11255789999999999999999999999997 455 77764          333333333211110


Q ss_pred             cCCCCeecCCCcccccccceeeccccCCccccc-----ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEe
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKRE-----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTIL  377 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~-----na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~vi  377 (457)
                      .+.........+... ++|++|-|+.-+.-..+     +...+ +..++.+---+|. ||= -+.-+++|..++
T Consensus       175 ~~~~~~~~~~~~~~~-~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~Tpl-L~~A~~~G~~~i  246 (283)
T COG0169         175 AAVEAAALADLEGLE-EADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPL-LREARAQGAKTI  246 (283)
T ss_pred             ccccccccccccccc-ccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHH-HHHHHHcCCeEE
Confidence            000011111111122 69999999865543332     12223 6678889999985 553 455667776643

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.01  E-value=0.53  Score=46.24  Aligned_cols=170  Identities=14%  Similarity=0.109  Sum_probs=85.1

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEE--EEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccce
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKV--IAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDV  330 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakV--VaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DI  330 (457)
                      +|.|+|+|++|+.+++.|.+.|..+  +.++|.       +   .+.+.++.+..      ++.+.. ++.++. .+|||
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r-------~---~~~~~~l~~~~------~~~~~~~~~~~~~-~~aDv   64 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR-------N---AQIAARLAERF------PKVRIAKDNQAVV-DRSDV   64 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECC-------C---HHHHHHHHHHc------CCceEeCCHHHHH-HhCCE
Confidence            7999999999999999998887533  334443       2   34444433321      122222 233443 36899


Q ss_pred             eeccccCCccccccccc--c-cceEEEecCCCCCCHHH-HHHHHh--CCCeEeccccc-ccCCcee--hhHHHhhhc---
Q 012750          331 LIPCALGGVLKRENAAD--V-KAKFIIEAANHPTDPEA-DEILSK--RGVTILPDIYA-NSGGVTV--SYFEWVQNI---  398 (457)
Q Consensus       331 liPaA~~~~It~~na~~--i-~akiIvEgAN~p~t~~a-~~iL~~--rGI~viPD~la-NaGGVi~--S~~E~~qn~---  398 (457)
                      ++-|.....+. +-+..  + +-++|+.-+ .+++.+. .+.+..  +-+.++|-.-. ...|++.  ...++++.+   
T Consensus        65 Vilav~p~~~~-~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~~~~~~~l~~~  142 (258)
T PRK06476         65 VFLAVRPQIAE-EVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPPDPFVAALFDA  142 (258)
T ss_pred             EEEEeCHHHHH-HHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCCHHHHHHHHHh
Confidence            99887643321 11111  1 235666544 4555443 334432  23345564222 2334433  222343332   


Q ss_pred             -ccCCC--CHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750          399 -QGFMW--EEDKVNNE-----LRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG  442 (457)
Q Consensus       399 -~~~~w--~~e~v~~~-----l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  442 (457)
                       -...|  +++..+.-     .-..+...+....+.+.+.|++..+|..++.
T Consensus       143 lG~~~~~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~  194 (258)
T PRK06476        143 LGTAVECDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLA  194 (258)
T ss_pred             cCCcEEECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence             11222  22222211     1122333555666677788888887765554

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.99  E-value=0.15  Score=53.86  Aligned_cols=125  Identities=20%  Similarity=0.254  Sum_probs=75.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC-cccCCCCeecCC------Cccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS-LKDFDGGDSMEP------SELL  324 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~-~~~~~~~~~i~~------~ell  324 (457)
                      ++|+|.|.|+||+.+|..|++.| .+|. |+|.+          .+.+.+.....+. +    .+..++-      .+++
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs----------~~~~~~i~~~~~~~v----~~~~vD~~d~~al~~li   66 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRS----------KEKCARIAELIGGKV----EALQVDAADVDALVALI   66 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEE-EEeCC----------HHHHHHHHhhccccc----eeEEecccChHHHHHHH
Confidence            57999999999999999999999 7877 77774          3455554443211 1    0111221      1234


Q ss_pred             ccccceeeccccCCccccccccc-ccce-EEEecCCCCC-CHHHHHHHHhCCCeEecccccccCCceehhHHHh
Q 012750          325 AHECDVLIPCALGGVLKRENAAD-VKAK-FIIEAANHPT-DPEADEILSKRGVTILPDIYANSGGVTVSYFEWV  395 (457)
Q Consensus       325 ~~~~DIliPaA~~~~It~~na~~-i~ak-iIvEgAN~p~-t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~  395 (457)
                      + +.|+.|-|+...+ +..-++. ++++ -++.-+|..- .-+-++...+.||.++|+. --+-|++..+....
T Consensus        67 ~-~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a~~a  137 (389)
T COG1748          67 K-DFDLVINAAPPFV-DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLAAYA  137 (389)
T ss_pred             h-cCCEEEEeCCchh-hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHHHHH
Confidence            3 4499999987542 2211111 2222 2345555543 3455678999999999986 34456766655543

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.95  E-value=0.44  Score=50.33  Aligned_cols=118  Identities=31%  Similarity=0.430  Sum_probs=72.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC---------CeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT---------GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL  323 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~---------G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~el  323 (457)
                      .+++|+|.|-||.-+|-.++++|++|+|+ |.+         |..|=.+ .+.+++++-..+.|.+..      .+.-+-
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lra------Ttd~~~   81 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV-DINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLRA------TTDPEE   81 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeE-eCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCceE------ecChhh
Confidence            89999999999999999999999999985 543         3333221 234554433333344321      122333


Q ss_pred             cccccceeeccccCCccccc---------cccc-c------cceEEEecCCCC-CCHHHHH-HHHhCCCeEec-cc
Q 012750          324 LAHECDVLIPCALGGVLKRE---------NAAD-V------KAKFIIEAANHP-TDPEADE-ILSKRGVTILP-DI  380 (457)
Q Consensus       324 l~~~~DIliPaA~~~~It~~---------na~~-i------~akiIvEgAN~p-~t~~a~~-iL~~rGI~viP-D~  380 (457)
                      ++ +||+++=|-. ..++..         |+.+ |      ..=+|.|..--| +|.+--. +|++++-+.+| ||
T Consensus        82 l~-~~dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df  155 (436)
T COG0677          82 LK-ECDVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF  155 (436)
T ss_pred             cc-cCCEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee
Confidence            44 9999977643 222322         2211 1      456889999888 7776665 56664655554 54

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.80  E-value=1.6  Score=44.34  Aligned_cols=111  Identities=20%  Similarity=0.145  Sum_probs=61.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCC------Ceec-CCCccc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG------GDSM-EPSELL  324 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~------~~~i-~~~ell  324 (457)
                      .++|+|+|.|++|..++..|.+.|..|+ +.+.+          .+.+............+++      .... ++.+.+
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~-~~~r~----------~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~   72 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVR-LWARR----------PEFAAALAAERENREYLPGVALPAELYPTADPEEAL   72 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence            3589999999999999999999999877 44442          2222222221111111111      1111 122222


Q ss_pred             ccccceeeccccCCccccccccccc-ceEEEecCCCCC-----CHHHHHHHHh---CCCe
Q 012750          325 AHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT-----DPEADEILSK---RGVT  375 (457)
Q Consensus       325 ~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~-----t~~a~~iL~~---rGI~  375 (457)
                       .+||+++-|.....+ ++-.+.++ -.+|+.-+|+-.     .....+.+.+   +++.
T Consensus        73 -~~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~  130 (328)
T PRK14618         73 -AGADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVA  130 (328)
T ss_pred             -cCCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeE
Confidence             479999988766543 33334442 246777788521     2334456655   6653

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=93.80  E-value=0.28  Score=45.16  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=28.4

Q ss_pred             eEEEEecChHHHHHHHHHH-HCCCEEEEEECCC
Q 012750          254 TFVIQGFGNVGSWAARLIH-ERGGKVIAVSDIT  285 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~  285 (457)
                      ||+|-|||.+|+.+++.+. +....||+|.|..
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence            7999999999999999887 4578999998874

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=93.79  E-value=0.73  Score=49.17  Aligned_cols=32  Identities=31%  Similarity=0.499  Sum_probs=28.3

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  284 (457)
                      .||.|-|||.+|+.+++.+.+ .+.+||+|-|.
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp  118 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP  118 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence            489999999999999999875 68999998774

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=93.76  E-value=0.13  Score=53.30  Aligned_cols=30  Identities=20%  Similarity=0.471  Sum_probs=26.2

Q ss_pred             EEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750          255 FVIQGFGNVGSWAARLIHE-RGGKVIAVSDI  284 (457)
Q Consensus       255 vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  284 (457)
                      |+|.|||.+|+.+++.+.+ .+.+||||+|.
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~   31 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT   31 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecC
Confidence            5899999999999998764 57899999985

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.76  E-value=0.24  Score=51.90  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=30.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +.+.+|+|+|+|.+|..+++.|...|++|+ +.|.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d~  198 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILDI  198 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEEC
Confidence            567889999999999999999999999866 5665

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.63  E-value=0.23  Score=50.22  Aligned_cols=54  Identities=24%  Similarity=0.215  Sum_probs=45.4

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.++|..|+..    ++++++.+++|++++|+|-+ .||.-++.+|.++|+.|+ ++.+.
T Consensus       136 ~~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~  190 (281)
T PRK14183        136 FVPCTPLGVME----LLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIF  190 (281)
T ss_pred             CCCCcHHHHHH----HHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence            35789888854    55667999999999999976 899999999999999887 77663

>PRK07680 late competence protein ComER; Validated

Probab=93.51  E-value=0.16  Score=50.50  Aligned_cols=110  Identities=15%  Similarity=0.265  Sum_probs=64.3

Q ss_pred             eEEEEecChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750          254 TFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD  329 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D  329 (457)
                      ++.|+|.|++|+.+++.|.+.|.   .-|.+.|.+          .+.+....++      +++.... ++.+++ .+||
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~----------~~~~~~~~~~------~~g~~~~~~~~~~~-~~aD   64 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT----------PAKAYHIKER------YPGIHVAKTIEEVI-SQSD   64 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC----------HHHHHHHHHH------cCCeEEECCHHHHH-HhCC
Confidence            68999999999999999998884   223355552          3333333222      2222222 223333 4899


Q ss_pred             eeeccccCCcccc---ccccccc-ceEEEecCCCCCCHHHHHHHHhCCCeEeccc
Q 012750          330 VLIPCALGGVLKR---ENAADVK-AKFIIEAANHPTDPEADEILSKRGVTILPDI  380 (457)
Q Consensus       330 IliPaA~~~~It~---~na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~viPD~  380 (457)
                      +++-|.....+.+   +-.+.++ -++|+.-+|+-......+.+..+.+.++|..
T Consensus        65 iVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~  119 (273)
T PRK07680         65 LIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSI  119 (273)
T ss_pred             EEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCCh
Confidence            9998875433211   1222332 4688888876433444555655667888853

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=93.51  E-value=0.78  Score=47.64  Aligned_cols=34  Identities=29%  Similarity=0.500  Sum_probs=29.6

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITG  286 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G  286 (457)
                      .||+|.|||.+|+..++.+.+ .+.++|+|.|...
T Consensus         6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~   40 (338)
T PLN02358          6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI   40 (338)
T ss_pred             eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence            699999999999999998775 4799999998653

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.47  E-value=0.25  Score=50.17  Aligned_cols=109  Identities=25%  Similarity=0.296  Sum_probs=66.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      .+|+++|+|++|+..|..|.+.|+.|. |.|.+          +++..+...+.|       ++..+...=....+||+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~-v~~r~----------~~ka~~~~~~~G-------a~~a~s~~eaa~~aDvVi   62 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVT-VYNRT----------PEKAAELLAAAG-------ATVAASPAEAAAEADVVI   62 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEE-EEeCC----------hhhhhHHHHHcC-------CcccCCHHHHHHhCCEEE
Confidence            479999999999999999999999987 67663          344233222211       221111111234888888


Q ss_pred             ccccC-----Ccccccc--cccc-cceEEEecCCC-C-CCHHHHHHHHhCCCeEecc
Q 012750          333 PCALG-----GVLKREN--AADV-KAKFIIEAANH-P-TDPEADEILSKRGVTILPD  379 (457)
Q Consensus       333 PaA~~-----~~It~~n--a~~i-~akiIvEgAN~-p-~t~~a~~iL~~rGI~viPD  379 (457)
                      -|-..     .++..+|  ++.+ +-+++++-.+. | .+.+..+.++++|+.++=-
T Consensus        63 tmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA  119 (286)
T COG2084          63 TMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDA  119 (286)
T ss_pred             EecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEec
Confidence            77432     2333221  1212 35677776654 3 3566678899999988643

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=93.47  E-value=1.9  Score=43.73  Aligned_cols=135  Identities=19%  Similarity=0.199  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      -+.|...+++    ..+.+++++++.|.|.|..++.++-.|...|++-+.|.+++-.       ..++..++.+.-+.  
T Consensus       107 D~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~-------~~~ka~~la~~~~~--  173 (288)
T PRK12749        107 DGTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE-------FFDKALAFAQRVNE--  173 (288)
T ss_pred             CHHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc-------HHHHHHHHHHHhhh--
Confidence            3567766654    4577889999999999999999999898899865658777421       12233333222110  


Q ss_pred             cCCC-CeecCCCc---cc--ccccceeeccccCCcccccc------cccc-cceEEEecCCCCC-CHHHHHHHHhCCCeE
Q 012750          311 DFDG-GDSMEPSE---LL--AHECDVLIPCALGGVLKREN------AADV-KAKFIIEAANHPT-DPEADEILSKRGVTI  376 (457)
Q Consensus       311 ~~~~-~~~i~~~e---ll--~~~~DIliPaA~~~~It~~n------a~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~v  376 (457)
                      .++. ....+.++   +.  -.++|++|-|+.-+.-...+      ...+ ...+|.+-..+|. |+ --+.-+++|..+
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~  252 (288)
T PRK12749        174 NTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTK-LLQQAQQAGCKT  252 (288)
T ss_pred             ccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCH-HHHHHHHCCCeE
Confidence            0100 01111111   11  13689999988654322111      1123 2357888888885 44 344556677766


Q ss_pred             ecc
Q 012750          377 LPD  379 (457)
Q Consensus       377 iPD  379 (457)
                      ++.
T Consensus       253 ~~G  255 (288)
T PRK12749        253 IDG  255 (288)
T ss_pred             ECC
Confidence            543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.46  E-value=0.15  Score=49.72  Aligned_cols=112  Identities=23%  Similarity=0.357  Sum_probs=62.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc-c---ccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL-A---HEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell-~---~~~  328 (457)
                      ++++|.|.|.||+.+|+.|.+.|..|+.| |.+          .+.+.++....-...-+- +.. +..+.| +   .++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I-d~d----------~~~~~~~~~~~~~~~~v~-gd~-t~~~~L~~agi~~a   67 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLI-DRD----------EERVEEFLADELDTHVVI-GDA-TDEDVLEEAGIDDA   67 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEE-EcC----------HHHHHHHhhhhcceEEEE-ecC-CCHHHHHhcCCCcC
Confidence            57999999999999999999999999954 432          334443222110000000 000 122233 2   389


Q ss_pred             ceeeccccCCcccc---ccc-ccccceEEEecCCCCCCHHHHHHHHhCC--CeEeccc
Q 012750          329 DVLIPCALGGVLKR---ENA-ADVKAKFIIEAANHPTDPEADEILSKRG--VTILPDI  380 (457)
Q Consensus       329 DIliPaA~~~~It~---~na-~~i~akiIvEgAN~p~t~~a~~iL~~rG--I~viPD~  380 (457)
                      |+++=+...+..|-   ..+ +.+..+-|+==+   .+++..++|.+-|  ..+.|..
T Consensus        68 D~vva~t~~d~~N~i~~~la~~~~gv~~viar~---~~~~~~~~~~~~g~~~ii~Pe~  122 (225)
T COG0569          68 DAVVAATGNDEVNSVLALLALKEFGVPRVIARA---RNPEHEKVLEKLGADVIISPEK  122 (225)
T ss_pred             CEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe---cCHHHHHHHHHcCCcEEECHHH
Confidence            99998876655442   112 223333333222   2566778888888  3445544

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=93.33  E-value=0.92  Score=46.91  Aligned_cols=31  Identities=35%  Similarity=0.635  Sum_probs=27.0

Q ss_pred             eEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          254 TFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      ||+|=|||-+|+.+.|.+.+.   ..+||+|-|.
T Consensus         1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~   34 (327)
T TIGR01534         1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL   34 (327)
T ss_pred             CEEEEccChHHHHHHHHHHhccCCceEEEEEecC
Confidence            589999999999999998765   5899999874

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=93.33  E-value=0.29  Score=50.12  Aligned_cols=35  Identities=31%  Similarity=0.616  Sum_probs=29.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++.=|+|+|.|.||+|++.+|.+.|.+=+-|.|-
T Consensus        72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDf  106 (430)
T KOG2018|consen   72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDF  106 (430)
T ss_pred             hcCcEEEEEecCchhHHHHHHHHHhcCceEEEech
Confidence            78888999999999999999999999854445553

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=93.27  E-value=1  Score=46.59  Aligned_cols=32  Identities=25%  Similarity=0.544  Sum_probs=27.8

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  284 (457)
                      .||+|=|||-+|+.+.|.+.+ ....||||-|.
T Consensus         3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~   35 (331)
T PRK15425          3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   35 (331)
T ss_pred             eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC
Confidence            489999999999999998764 46899999874

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=93.15  E-value=0.15  Score=52.24  Aligned_cols=112  Identities=21%  Similarity=0.241  Sum_probs=68.0

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .++.|+||.|+|+|++|+.+|+.|...|.+|+++. .+..-  ..|+               ..+..  ..+-++++ .+
T Consensus       132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~-~~~~~--~~~~---------------~~~~~--~~~l~e~l-~~  190 (312)
T PRK15469        132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWS-RSRKS--WPGV---------------QSFAG--REELSAFL-SQ  190 (312)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe-CCCCC--CCCc---------------eeecc--cccHHHHH-hc
Confidence            35789999999999999999999999999998653 32100  0010               01100  01112333 37


Q ss_pred             cceeeccccCC-----ccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eeccc
Q 012750          328 CDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDI  380 (457)
Q Consensus       328 ~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~  380 (457)
                      ||+++-|...+     .|+.+...+++ -.+++.-|-+++ ..++ -+.|.+.-|. ..=|+
T Consensus       191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDV  252 (312)
T PRK15469        191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDV  252 (312)
T ss_pred             CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecC
Confidence            89988876543     34444444443 358888888884 4444 3577777664 33344

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=93.15  E-value=0.14  Score=52.76  Aligned_cols=105  Identities=17%  Similarity=0.292  Sum_probs=66.9

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|++. |.+.          +.....      + .+    .-+.++++ ..
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~-d~~~----------~~~~~~------~-~~----~~~l~ell-~~  198 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAY-DAYP----------NKDLDF------L-TY----KDSVKEAI-KD  198 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-eCCh----------hHhhhh------h-hc----cCCHHHHH-hc
Confidence            4589999999999999999999999999999854 4321          111000      0 01    00223333 37


Q ss_pred             cceeeccccCC-----ccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750          328 CDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT  375 (457)
Q Consensus       328 ~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~  375 (457)
                      ||+++-|...+     .++++....++ -.+++..+=+++ ..+| .+.|.+.-|.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~  254 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL  254 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee
Confidence            89998887543     34444444443 468888888884 4444 3677776664

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.13  E-value=0.057  Score=53.02  Aligned_cols=36  Identities=31%  Similarity=0.628  Sum_probs=29.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+..+|+|.|.|.||+++++.|.+.|..=+.+.|.+
T Consensus         9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755           9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            677899999999999999999999997433355543

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=93.09  E-value=0.17  Score=50.71  Aligned_cols=85  Identities=15%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~  328 (457)
                      .||.|+|||++|+.+++.|...   ++++++|.|+..          +...+....         ...+ +.++++..++
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~----------~~~~~~~~~---------~~~~~~l~~ll~~~~   63 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA----------DLPPALAGR---------VALLDGLPGLLAWRP   63 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH----------HHHHHhhcc---------CcccCCHHHHhhcCC
Confidence            6899999999999999988653   378998877742          222221111         1122 3467778899


Q ss_pred             ceeeccccCCcccccccccc--cceEEEec
Q 012750          329 DVLIPCALGGVLKRENAADV--KAKFIIEA  356 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~i--~akiIvEg  356 (457)
                      |++|+||....+.+--..-+  .+.+|+-.
T Consensus        64 DlVVE~A~~~av~e~~~~iL~~g~dlvv~S   93 (267)
T PRK13301         64 DLVVEAAGQQAIAEHAEGCLTAGLDMIICS   93 (267)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence            99999998776654322223  34555533

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=93.08  E-value=0.16  Score=51.85  Aligned_cols=119  Identities=24%  Similarity=0.400  Sum_probs=74.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD  329 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~D  329 (457)
                      +.|+-++|-|||+||...|..|.-.|++|+ |+..+.         +.+|....+      +|   +..+-+|.. .+.|
T Consensus       212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTEiDP---------I~ALQAaMe------G~---~V~tm~ea~-~e~d  271 (434)
T KOG1370|consen  212 IAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTEIDP---------ICALQAAME------GY---EVTTLEEAI-REVD  271 (434)
T ss_pred             ecccEEEEeccCccchhHHHHHhhcCcEEE-EeccCc---------hHHHHHHhh------cc---EeeeHHHhh-hcCC
Confidence            788889999999999999999999999998 887642         445543222      22   333333332 3779


Q ss_pred             eeecccc-CCccccccccccc------------ceEEEecCCCCC------CHHHHHHHHhCC---CeEecccccccCCc
Q 012750          330 VLIPCAL-GGVLKRENAADVK------------AKFIIEAANHPT------DPEADEILSKRG---VTILPDIYANSGGV  387 (457)
Q Consensus       330 IliPaA~-~~~It~~na~~i~------------akiIvEgAN~p~------t~~a~~iL~~rG---I~viPD~laNaGGV  387 (457)
                      |||-+.. .++|+.+..++.+            ..|=+-+-|-|.      -|..|++....|   |+..-.-+.|-|..
T Consensus       272 ifVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~iIlLAeGRLvNL~Ca  351 (434)
T KOG1370|consen  272 IFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHIILLAEGRLVNLGCA  351 (434)
T ss_pred             EEEEccCCcchhhHHHHHhCcCCcEEeccccccceeehhhccCCcceeeecccccceeeccCCcEEEEEecCceeecccc
Confidence            9998875 4678876555543            333333444431      244455544444   34455566777665


Q ss_pred             e
Q 012750          388 T  388 (457)
Q Consensus       388 i  388 (457)
                      +
T Consensus       352 t  352 (434)
T KOG1370|consen  352 T  352 (434)
T ss_pred             c
Confidence            4

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.04  E-value=0.22  Score=49.08  Aligned_cols=36  Identities=17%  Similarity=0.430  Sum_probs=31.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+..+|.|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            688999999999999999999999998555577764

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=93.01  E-value=1.6  Score=39.94  Aligned_cols=32  Identities=31%  Similarity=0.593  Sum_probs=27.7

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  284 (457)
                      .+|+|.|||.+|+.+++.+.+ .+.+++++.|.
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            479999999999999998874 58899998874

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.93  E-value=0.55  Score=51.34  Aligned_cols=35  Identities=20%  Similarity=0.175  Sum_probs=30.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ..+.+|+|.|+|.+|..++..+...|++|+ +.|.+
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d~~  196 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFDTR  196 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            457899999999999999999999999976 66664

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.84  E-value=0.23  Score=48.94  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=31.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++.+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            678899999999999999999999998655577654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=92.83  E-value=0.35  Score=48.26  Aligned_cols=99  Identities=15%  Similarity=0.182  Sum_probs=58.8

Q ss_pred             CeEEEEe-cChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC-Ccccccccc
Q 012750          253 LTFVIQG-FGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP-SELLAHECD  329 (457)
Q Consensus       253 ~~vaIqG-fGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~-~ell~~~~D  329 (457)
                      .+|+|.| +|.+|+.+++.+.+ .+.+++++.|....-.  .|-|..++....       .+ +....++ +++ ..++|
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~~~~~~~~~~~-------~~-gv~~~~d~~~l-~~~~D   70 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QGTDAGELAGIG-------KV-GVPVTDDLEAV-ETDPD   70 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cCCCHHHhcCcC-------cC-CceeeCCHHHh-cCCCC
Confidence            4899999 79999999998875 6899999999532110  133443332110       01 1111122 233 45789


Q ss_pred             eeeccccCCccccccccc---ccceEEEecCCCCCCHHH
Q 012750          330 VLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEA  365 (457)
Q Consensus       330 IliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a  365 (457)
                      ++|.|+... .+.+++..   -+..+|+|=-  ..|++-
T Consensus        71 vVIdfT~p~-~~~~~~~~al~~g~~vVigtt--g~~~e~  106 (266)
T TIGR00036        71 VLIDFTTPE-GVLNHLKFALEHGVRLVVGTT--GFSEED  106 (266)
T ss_pred             EEEECCChH-HHHHHHHHHHHCCCCEEEECC--CCCHHH
Confidence            999998443 33344433   3567888764  356543

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.80  E-value=0.38  Score=48.75  Aligned_cols=53  Identities=23%  Similarity=0.249  Sum_probs=44.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..++|.+|++..    +++++.+++|++++|+| ...||+-++.+|.++|+.|+ ++.+
T Consensus       137 ~~PcTp~aii~l----L~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs  190 (282)
T PRK14180        137 LESCTPKGIMTM----LREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHR  190 (282)
T ss_pred             cCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcC
Confidence            357899888665    45579999999999999 57899999999999999987 6765

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.79  E-value=0.13  Score=49.24  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |++.+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            788999999999999999999999998444477765

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.72  E-value=0.069  Score=50.17  Aligned_cols=30  Identities=27%  Similarity=0.342  Sum_probs=25.6

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+|+|.|.+|+..|..++..|.+|+ +.|.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~   30 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVT-LYDR   30 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEE-EE-S
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEE-EEEC
Confidence            68999999999999999999999998 6565

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=92.62  E-value=1  Score=47.71  Aligned_cols=32  Identities=34%  Similarity=0.558  Sum_probs=28.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      .+|+|.|||.+|+.+.+.|.+.   ..+|++|-|.
T Consensus        61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~   95 (395)
T PLN03096         61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT   95 (395)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence            6899999999999999999876   4699988774

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=92.56  E-value=0.42  Score=48.30  Aligned_cols=165  Identities=19%  Similarity=0.184  Sum_probs=90.5

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccceee
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVLI  332 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIli  332 (457)
                      +|.++|.|++|+.+++.|.+.|..|+ |.|.+     |   +.+.+   .+ .|       .... ++.++. .+||+++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~~-----~---~~~~~---~~-~g-------~~~~~s~~~~~-~~advVi   60 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLH-VTTIG-----P---VADEL---LS-LG-------AVSVETARQVT-EASDIIF   60 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEE-EEeCC-----H---hHHHH---HH-cC-------CeecCCHHHHH-hcCCEEE
Confidence            68999999999999999999999886 65652     1   11222   11 11       1111 233333 4889998


Q ss_pred             ccccCC-----cccccc--ccc-ccceEEEecCCCC--CCHHHHHHHHhCCCeEecccccccCCce----------e---
Q 012750          333 PCALGG-----VLKREN--AAD-VKAKFIIEAANHP--TDPEADEILSKRGVTILPDIYANSGGVT----------V---  389 (457)
Q Consensus       333 PaA~~~-----~It~~n--a~~-i~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~laNaGGVi----------~---  389 (457)
                      -|-...     ++..++  +.. .+-++|++-....  .+.+..+.+.++|+.++---  -+||..          +   
T Consensus        61 ~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP--VsGg~~~a~~g~l~~~~gG~  138 (292)
T PRK15059         61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAP--VSGGEIGAREGTLSIMVGGD  138 (292)
T ss_pred             EeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEec--CCCCHHHHhcCcEEEEEcCC
Confidence            775432     222211  122 2347888776543  34556678999999876532  233332          1   


Q ss_pred             -hhHHHhhhc----c-c-CCCCH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012750          390 -SYFEWVQNI----Q-G-FMWEE-------DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTL  441 (457)
Q Consensus       390 -S~~E~~qn~----~-~-~~w~~-------e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  441 (457)
                       ..+|.++.+    - . ++..+       +-++.-+-......+.+.+..+++.|+++.+...++
T Consensus       139 ~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l  204 (292)
T PRK15059        139 EAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL  204 (292)
T ss_pred             HHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence             112222211    0 0 00110       112233333334556677778889999988776554

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.53  E-value=0.34  Score=49.32  Aligned_cols=53  Identities=21%  Similarity=0.222  Sum_probs=45.0

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .++|..|+..    ++++.+.+++|++++|+| ...||+-++.+|.++++.|+ +++++
T Consensus       140 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~  193 (294)
T PRK14187        140 IPCTPKGCLY----LIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSA  193 (294)
T ss_pred             cCcCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCC
Confidence            4689988864    556679999999999999 57799999999999999988 77764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.49  E-value=0.17  Score=46.66  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  281 (457)
                      ++++|++|+|+|.|+||...++.|.+.|++|+=|
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI   42 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV   42 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            5789999999999999999999999999999844

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=92.41  E-value=3  Score=42.17  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      -|.|...+++.    .+.+++++++.|.|.|-+|+.++-.|.+.|++-+.|.|.+          .++..++.+.-.  .
T Consensus       110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~ka~~La~~~~--~  173 (283)
T PRK14027        110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------TSRAQALADVIN--N  173 (283)
T ss_pred             CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHh--h
Confidence            46677777653    3446789999999999999999999999998666677763          333333332210  0


Q ss_pred             cCCCC--eecCC---CcccccccceeeccccCCccccc----ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEec
Q 012750          311 DFDGG--DSMEP---SELLAHECDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP  378 (457)
Q Consensus       311 ~~~~~--~~i~~---~ell~~~~DIliPaA~~~~It~~----na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viP  378 (457)
                      .++..  ...+.   .+.+ .++|++|-|+.-+.-..+    ....+ +..+|.+-...|. || --+.-+++|..++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~~~  250 (283)
T PRK14027        174 AVGREAVVGVDARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETE-LLKAARALGCETLD  250 (283)
T ss_pred             ccCcceEEecCHhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCH-HHHHHHHCCCEEEc
Confidence            11110  01111   1122 368999988754432111    11112 3467888888885 44 34455667766543

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=92.39  E-value=0.25  Score=48.56  Aligned_cols=73  Identities=21%  Similarity=0.280  Sum_probs=50.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750          253 LTFVIQGFGNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI  330 (457)
                      ++|.|+|+|..|..+.+++.+-  .+++++|.|.+          .++.++..+.      +......+-++++ .+.|+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~----------~ek~~~~~~~------~~~~~~s~ide~~-~~~Dl   63 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD----------EEKAKELEAS------VGRRCVSDIDELI-AEVDL   63 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC----------HHHHHHHHhh------cCCCccccHHHHh-hccce
Confidence            3689999999999999988743  58999998884          3444443322      1111122345666 79999


Q ss_pred             eeccccCCcccc
Q 012750          331 LIPCALGGVLKR  342 (457)
Q Consensus       331 liPaA~~~~It~  342 (457)
                      +++||..+.+-+
T Consensus        64 vVEaAS~~Av~e   75 (255)
T COG1712          64 VVEAASPEAVRE   75 (255)
T ss_pred             eeeeCCHHHHHH
Confidence            999998776544

>PRK14851 hypothetical protein; Provisional

Probab=92.38  E-value=0.11  Score=58.47  Aligned_cols=120  Identities=10%  Similarity=0.116  Sum_probs=68.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhH-hhcCCcccCCCCeecCCCccccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHK-DKTGSLKDFDGGDSMEPSELLAHEC  328 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~-~~~g~~~~~~~~~~i~~~ell~~~~  328 (457)
                      |++.+|+|+|.|-||+.+++.|...|..=+-+.|.+-       +++..|-+.. .....+ +.+..+. -.+.+.+...
T Consensus        41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~-------ve~sNLNRQ~~~~~~dv-G~~Kv~v-~~~~l~~inP  111 (679)
T PRK14851         41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ-------FEPVNVNRQFGARVPSF-GRPKLAV-MKEQALSINP  111 (679)
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE-------ecccccccCcCcChhhC-CCHHHHH-HHHHHHHhCC
Confidence            6789999999999999999999999985555777642       2222221100 000000 0011110 1122333333


Q ss_pred             ceeeccccCCcccccccccc--cceEEEecCCCCCCH---HHHHHHHhCCCeEecc
Q 012750          329 DVLIPCALGGVLKRENAADV--KAKFIIEAANHPTDP---EADEILSKRGVTILPD  379 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~---~a~~iL~~rGI~viPD  379 (457)
                      ++=|.+ ...-|+++|++.+  ++.+|+++..++...   ...+...++||.++--
T Consensus       112 ~~~I~~-~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~  166 (679)
T PRK14851        112 FLEITP-FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITA  166 (679)
T ss_pred             CCeEEE-EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence            444443 3345677887764  788999999876322   1234456788877643

>PRK07340 ornithine cyclodeaminase; Validated

Probab=92.36  E-value=1.4  Score=44.90  Aligned_cols=115  Identities=12%  Similarity=0.060  Sum_probs=71.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC  328 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~  328 (457)
                      ...+++.|.|.|..|+..++.+.. .+.+-|.|.|.+          .+...++.++-+.. ++ ....-+.++.+ .++
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~a~~~~~~-~~-~~~~~~~~~av-~~a  189 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT----------AASAAAFCAHARAL-GP-TAEPLDGEAIP-EAV  189 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHHHhc-CC-eeEECCHHHHh-hcC
Confidence            467899999999999999998865 676666576663          34444444332211 11 11111223344 399


Q ss_pred             ceeeccccC--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEeccc
Q 012750          329 DVLIPCALG--GVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDI  380 (457)
Q Consensus       329 DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~  380 (457)
                      ||++=|+..  ..++.  .-+-.+-+++=|++.|-..|.+..+-.+- .++-|-
T Consensus       190 DiVitaT~s~~Pl~~~--~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~  240 (304)
T PRK07340        190 DLVVTATTSRTPVYPE--AARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD  240 (304)
T ss_pred             CEEEEccCCCCceeCc--cCCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence            999998764  34543  22446779999999997777665444454 344353

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=92.33  E-value=2.6  Score=42.48  Aligned_cols=136  Identities=15%  Similarity=0.217  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhc-CCcc
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT-GSLK  310 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~-g~~~  310 (457)
                      +.|...+++    ..+.+++++++.|.|.|..|+.++..|.+.|++-|.|.+.+-.-+  +  ..+++.+...+. ....
T Consensus       110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~--~--~a~~l~~~l~~~~~~~~  181 (289)
T PRK12548        110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFY--E--RAEQTAEKIKQEVPECI  181 (289)
T ss_pred             HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHH--H--HHHHHHHHHhhcCCCce
Confidence            566666554    345678899999999999999999999999997444776631000  0  012222211111 1100


Q ss_pred             cCCCCeecCCC-ccc--ccccceeeccccCCccccc------ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEec
Q 012750          311 DFDGGDSMEPS-ELL--AHECDVLIPCALGGVLKRE------NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP  378 (457)
Q Consensus       311 ~~~~~~~i~~~-ell--~~~~DIliPaA~~~~It~~------na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viP  378 (457)
                       .. ...++.. ++-  -..+|++|-|..-+.-...      ....+ +-.+|.+-..+|. || --+.-+++|..++.
T Consensus       182 -~~-~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~~~  257 (289)
T PRK12548        182 -VN-VYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTK-LLEDAEAAGCKTVG  257 (289)
T ss_pred             -eE-EechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCH-HHHHHHHCCCeeeC
Confidence             00 0011111 111  1257999988754432211      11123 3357888888885 44 34455667766544

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.30  E-value=0.57  Score=52.10  Aligned_cols=136  Identities=16%  Similarity=0.215  Sum_probs=80.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc----cccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell----~~~~  328 (457)
                      .+|+|.|||.+|+.+++.|.++|..++ +-|.          |++.+.+..+. |.-.-|-++   +..+.|    -.+|
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GDa---t~~~~L~~agi~~A  465 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLER----------DISAVNLMRKY-GYKVYYGDA---TQLELLRAAGAEKA  465 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhC-CCeEEEeeC---CCHHHHHhcCCccC
Confidence            579999999999999999999999998 5565          34555544332 211111111   233444    2388


Q ss_pred             ceeeccccCCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCCe-EecccccccCCceehhHHHhhh-cccC
Q 012750          329 DVLIPCALGGVLKR---ENAADV--KAKFIIEAANHPTDPEADEILSKRGVT-ILPDIYANSGGVTVSYFEWVQN-IQGF  401 (457)
Q Consensus       329 DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~~a~~iL~~rGI~-viPD~laNaGGVi~S~~E~~qn-~~~~  401 (457)
                      |++|=|.-....|.   ..+.+.  +.++|+-.    .+++..+.|++.|+- ++|+.+-.+       .+.-.. +...
T Consensus       466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa----~~~~~~~~L~~~Ga~~vv~e~~es~-------l~l~~~~L~~l  534 (601)
T PRK03659        466 EAIVITCNEPEDTMKIVELCQQHFPHLHILARA----RGRVEAHELLQAGVTQFSRETFSSA-------LELGRKTLVSL  534 (601)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe----CCHHHHHHHHhCCCCEEEccHHHHH-------HHHHHHHHHHc
Confidence            98887754432221   223332  56788843    356788899999995 567754432       222211 2234


Q ss_pred             CCCHHHHHHHHHH
Q 012750          402 MWEEDKVNNELRR  414 (457)
Q Consensus       402 ~w~~e~v~~~l~~  414 (457)
                      ..+.+++.+.+++
T Consensus       535 g~~~~~~~~~~~~  547 (601)
T PRK03659        535 GMHPHQAQRAQQH  547 (601)
T ss_pred             CCCHHHHHHHHHH
Confidence            4566677666655

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=92.07  E-value=0.21  Score=46.64  Aligned_cols=37  Identities=27%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCe
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGA  287 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~  287 (457)
                      |++++|+|+|||+-|..-|.-|.+.|.+|+ |....+.
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~s   38 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREGS   38 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TTC
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCCC
Confidence            578999999999999999999999999998 7766553

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.99  E-value=0.47  Score=49.18  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=31.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+..+|+|+|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            688999999999999999999999998545577764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=91.97  E-value=0.21  Score=46.17  Aligned_cols=34  Identities=32%  Similarity=0.489  Sum_probs=27.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +...+|+|.|.|+||..+++.|...|++++ +.|.
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d~   51 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPDE   51 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEES
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhHCCCEEE-eccC
Confidence            566899999999999999999999999998 4554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=91.92  E-value=0.21  Score=47.93  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.4

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      ++++|++|.|+|.|.||...++.|.+.|++|+-|+
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs   40 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS   40 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence            46899999999999999999999999999988443

>PLN02306 hydroxypyruvate reductase

Probab=91.84  E-value=0.23  Score=52.39  Aligned_cols=126  Identities=22%  Similarity=0.259  Sum_probs=72.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC-Cc---ccCC-CCeec-C
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG-SL---KDFD-GGDSM-E  319 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g-~~---~~~~-~~~~i-~  319 (457)
                      |.++.|++|.|+|+|++|+.+|+.|. ..|.+|++ .|....         ..+.......+ .+   ...+ +.+.. +
T Consensus       160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~-~d~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  229 (386)
T PLN02306        160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQS---------TRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (386)
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECCCCc---------hhhhhhhhhhcccccccccccccccccCC
Confidence            44689999999999999999999985 78999984 344210         01100000000 00   0000 00111 2


Q ss_pred             CCcccccccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eecccccc
Q 012750          320 PSELLAHECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIYAN  383 (457)
Q Consensus       320 ~~ell~~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~laN  383 (457)
                      -++++. .|||++-+...     +.|+++....+| -.+++.-|=+++ ..+| .+.|++.-|. ..=|+..+
T Consensus       230 L~ell~-~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~  301 (386)
T PLN02306        230 MEEVLR-EADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFED  301 (386)
T ss_pred             HHHHHh-hCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCC
Confidence            244443 68999887543     345555555554 468888888885 4444 3677776664 33454433

>PRK07877 hypothetical protein; Provisional

Probab=91.66  E-value=0.36  Score=54.85  Aligned_cols=125  Identities=13%  Similarity=0.174  Sum_probs=70.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      |+..+|.|+|.| ||++++.+|...|.  +++ +.|.+-       +++..|-+.......+ +-+.++ +-.+.+.+..
T Consensus       105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~-lvD~D~-------ve~sNLnRq~~~~~di-G~~Kv~-~a~~~l~~in  173 (722)
T PRK07877        105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELR-LADFDT-------LELSNLNRVPAGVFDL-GVNKAV-VAARRIAELD  173 (722)
T ss_pred             HhcCCEEEEEec-HHHHHHHHHHHccCCCeEE-EEcCCE-------EcccccccccCChhhc-ccHHHH-HHHHHHHHHC
Confidence            788999999999 99999999999994  665 777642       2222222110000000 000000 0112233344


Q ss_pred             cceeeccccCCcccccccccc--cceEEEecCCCCCC-HHHHHHHHhCCCeEecccccccCCce
Q 012750          328 CDVLIPCALGGVLKRENAADV--KAKFIIEAANHPTD-PEADEILSKRGVTILPDIYANSGGVT  388 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t-~~a~~iL~~rGI~viPD~laNaGGVi  388 (457)
                      .+|=|.+ +..-|+++|++.+  ++.+|+++.-+.-+ -...+.-.++||.+|=.-  .++|.+
T Consensus       174 p~i~v~~-~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~--~~~g~~  234 (722)
T PRK07877        174 PYLPVEV-FTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMAT--SDRGLL  234 (722)
T ss_pred             CCCEEEE-EeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCCc
Confidence            4444443 3345677888775  78888888877533 223345678888887433  344554

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=91.56  E-value=0.47  Score=47.53  Aligned_cols=165  Identities=16%  Similarity=0.167  Sum_probs=88.2

Q ss_pred             EEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccceeeccc
Q 012750          257 IQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVLIPCA  335 (457)
Q Consensus       257 IqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIliPaA  335 (457)
                      ++|.|++|..+++.|.+.|.+|+ +.|.+          .+.+.+..+. |       .... ++.+.. .+||+++-|-
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-g-------~~~~~s~~~~~-~~advVil~v   60 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVR-VFDLF----------PDAVEEAVAA-G-------AQAAASPAEAA-EGADRVITML   60 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHHH-hcCCEEEEeC
Confidence            47999999999999999999876 55543          2333333322 1       1111 223333 3789998876


Q ss_pred             cCCcccc-------ccccccc-ceEEEecCCCC--CCHHHHHHHHhCCCeEeccccc-------------ccCCceehhH
Q 012750          336 LGGVLKR-------ENAADVK-AKFIIEAANHP--TDPEADEILSKRGVTILPDIYA-------------NSGGVTVSYF  392 (457)
Q Consensus       336 ~~~~It~-------~na~~i~-akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~la-------------NaGGVi~S~~  392 (457)
                      .......       .-.+.++ -++|+...+..  ++.+..+.+.++|+.++---+.             -.||-- ..+
T Consensus        61 p~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~-~~~  139 (288)
T TIGR01692        61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVA-EEF  139 (288)
T ss_pred             CChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCH-HHH
Confidence            5422211       1122332 36777776543  2345567888999988663221             122221 223


Q ss_pred             HHhhhc----cc-C-CC---CHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750          393 EWVQNI----QG-F-MW---EEDKV----NNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG  442 (457)
Q Consensus       393 E~~qn~----~~-~-~w---~~e~v----~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  442 (457)
                      +.++.+    .. . +-   ...+.    +..+.......+.+.+..+++.|+++.+...++.
T Consensus       140 ~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~  202 (288)
T TIGR01692       140 AAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIAN  202 (288)
T ss_pred             HHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            322221    00 0 00   11122    2223333334566788888999999887665544

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=91.46  E-value=0.29  Score=50.59  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=30.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  281 (457)
                      |+|++|+|+|+|++|+..|+.|...|.+|+..
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~   45 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVG   45 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence            89999999999999999999999999999843

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=91.40  E-value=2.2  Score=44.50  Aligned_cols=32  Identities=22%  Similarity=0.398  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  284 (457)
                      .||+|-|||-+|+.+.|.+.+ ....||+|-|.
T Consensus         3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~   35 (343)
T PRK07729          3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS   35 (343)
T ss_pred             eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC
Confidence            489999999999999998765 46899999774

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.39  E-value=2.7  Score=42.79  Aligned_cols=29  Identities=17%  Similarity=0.422  Sum_probs=26.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaV  281 (457)
                      ++|+|+|.|.||+..|..|.+.|..|+.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~   31 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLI   31 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence            57999999999999999999999998854

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=91.34  E-value=5.7  Score=41.94  Aligned_cols=31  Identities=32%  Similarity=0.500  Sum_probs=27.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|.||..+|..|.+.|.+|++ .|.
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~-~d~   31 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTG-VDI   31 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEE-EEC
Confidence            3799999999999999999999999985 454

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=91.29  E-value=0.41  Score=48.28  Aligned_cols=52  Identities=21%  Similarity=0.213  Sum_probs=46.5

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  281 (457)
                      -|+|-.+..+.+.++++|++++..+|+|.|. |.+|+.+++.|..++.++.-+
T Consensus       145 ~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll  197 (351)
T COG5322         145 HTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELL  197 (351)
T ss_pred             cchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEe
Confidence            5888888888888889999999999999997 999999999999888877644

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=91.28  E-value=1.7  Score=45.22  Aligned_cols=96  Identities=26%  Similarity=0.321  Sum_probs=56.1

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHH---HHhHhhcCCccc---CC------CCeec-
Q 012750          253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKL---LAHKDKTGSLKD---FD------GGDSM-  318 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L---~~~~~~~g~~~~---~~------~~~~i-  318 (457)
                      .||+|-|||-+|+.+.|.+.+ ...+||+|-|...        |++.+   ++|=-..|.+..   +.      +++.| 
T Consensus         3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~--------~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~   74 (337)
T PTZ00023          3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFM--------TLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVH   74 (337)
T ss_pred             eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCC--------ChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEE
Confidence            489999999999999998764 4689999977422        33333   222112333211   11      11111 


Q ss_pred             -----CCCc--ccccccceeeccccCCccccccccc---ccceEEEecC
Q 012750          319 -----EPSE--LLAHECDVLIPCALGGVLKRENAAD---VKAKFIIEAA  357 (457)
Q Consensus       319 -----~~~e--ll~~~~DIliPaA~~~~It~~na~~---i~akiIvEgA  357 (457)
                           +|.+  |-+..+|+.+.|+... .+.+.++.   -.||.|.-.|
T Consensus        75 ~~~~~dp~~lpW~~~gvDiVle~tG~~-~s~~~a~~~l~aGak~V~iSa  122 (337)
T PTZ00023         75 VFFEKDPAAIPWGKNGVDVVCESTGVF-LTKEKAQAHLKGGAKKVIMSA  122 (337)
T ss_pred             EEeCCChhhCCccccCCCEEEEecchh-cCHHHHHHHhhCCCEEEEeCC
Confidence                 1222  2256899999997543 55555543   3566666665

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=91.27  E-value=0.29  Score=50.67  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=29.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEE
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIA  280 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVa  280 (457)
                      +++++|+|+|+|++|+..|+.|.+.|.+|+.
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv   45 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVV   45 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence            8899999999999999999999999999873

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=91.22  E-value=2  Score=44.59  Aligned_cols=32  Identities=28%  Similarity=0.470  Sum_probs=27.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      .||+|=|||-+|+.+.|.+.+.   ..+||+|-|.
T Consensus         2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~   36 (337)
T PRK07403          2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT   36 (337)
T ss_pred             eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC
Confidence            4899999999999999987654   5899999774

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=91.17  E-value=0.28  Score=47.21  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      ++++|++|+|+|.|.||..-++.|.+.|++|+-|+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs   39 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA   39 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence            35899999999999999999999999999998443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=91.16  E-value=1.1  Score=52.62  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=31.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..|++|+|+|.|..|..+|..|..+|++|+ |.|.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt-v~E~  414 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVT-AIDG  414 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEE-EEcc
Confidence            478999999999999999999999999998 6664

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=91.15  E-value=0.41  Score=45.85  Aligned_cols=55  Identities=25%  Similarity=0.363  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHH--HHHCCCEEEEEECCCC
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARL--IHERGGKVIAVSDITG  286 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~--L~~~GakVVaVsD~~G  286 (457)
                      -||-|-+-.+.+.+.+|.+ +-..++|+|.||.|++++.+  ..+.|.+|+++.|.+.
T Consensus        64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~  120 (211)
T COG2344          64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDP  120 (211)
T ss_pred             CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCH
Confidence            3555666666666677777 44679999999999999864  3467999999999853

>PRK14852 hypothetical protein; Provisional

Probab=91.14  E-value=0.61  Score=54.44  Aligned_cols=123  Identities=11%  Similarity=0.063  Sum_probs=71.3

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhH-hhcCCcccCCCCeecCCCcccccc
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHK-DKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~-~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .|+..+|+|+|.|-||+.+++.|...|..=+.+.|-+-       ++...|-+.. .....+ +-+.++ +-.+.+.+..
T Consensus       329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~-------Ve~SNLNRQ~l~~~~dI-G~~Kae-vaa~~l~~IN  399 (989)
T PRK14852        329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA-------YSPVNLNRQYGASIASF-GRGKLD-VMTERALSVN  399 (989)
T ss_pred             HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE-------ecccccccccCCChhhC-CChHHH-HHHHHHHHHC
Confidence            38899999999999999999999999986666777642       2222221100 000000 000000 0011233444


Q ss_pred             cceeeccccCCcccccccccc--cceEEEecCCCCCCHHHH---HHHHhCCCeEecccc
Q 012750          328 CDVLIPCALGGVLKRENAADV--KAKFIIEAANHPTDPEAD---EILSKRGVTILPDIY  381 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~~a~---~iL~~rGI~viPD~l  381 (457)
                      .++=|.+-- .-|+++|++.+  ++-+|+++..++.+....   ....++||.++---.
T Consensus       400 P~v~I~~~~-~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~  457 (989)
T PRK14852        400 PFLDIRSFP-EGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP  457 (989)
T ss_pred             CCCeEEEEe-cCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence            444444422 24678888875  788999999886543222   334788887765443

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=91.09  E-value=0.48  Score=45.97  Aligned_cols=50  Identities=24%  Similarity=0.229  Sum_probs=40.4

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG  307 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g  307 (457)
                      .+++|++|+|+|.|.||..=+++|.+.|++|+-||+..          .+++..+.++.+
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~----------~~el~~~~~~~~   57 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF----------EPELKALIEEGK   57 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc----------cHHHHHHHHhcC
Confidence            46899999999999999999999999999999787763          245655555433

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=90.99  E-value=5.1  Score=40.30  Aligned_cols=124  Identities=15%  Similarity=0.186  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      -+.|...+++.    .+.+ .+++++|.|.|-.++.++..|.+.|++-|.|.+.+          .++..++.+.-+   
T Consensus       106 D~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~~a~~la~~~~---  167 (272)
T PRK12550        106 DYIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN----------EKTGKALAELYG---  167 (272)
T ss_pred             CHHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHHHHhC---
Confidence            45677666653    3554 35699999999999999999999998655577764          233333332211   


Q ss_pred             cCCCCeecCCCcccccccceeeccccCCcccccc-----c--ccc-cceEEEecCCCCCCHHHHHHHHhCCCeEec
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKREN-----A--ADV-KAKFIIEAANHPTDPEADEILSKRGVTILP  378 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~n-----a--~~i-~akiIvEgAN~p~t~~a~~iL~~rGI~viP  378 (457)
                       ++    .. +++-...+|++|-|+.-+.-...+     .  ..+ +..+|.+-..+|....--+.-+++|..++.
T Consensus       168 -~~----~~-~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i~  237 (272)
T PRK12550        168 -YE----WR-PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETPLIRYARARGKTVIT  237 (272)
T ss_pred             -Cc----ch-hhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCHHHHHHHHCcCeEeC
Confidence             10    00 111124689999998654332111     1  112 235788888777432234455677766654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=90.99  E-value=1.9  Score=43.97  Aligned_cols=116  Identities=15%  Similarity=0.134  Sum_probs=69.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE  327 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~  327 (457)
                      ...+++.|+|.|.+|+..++.+.. ++.+=|-|.+.+          .+...++.++-... +. ..... +.++.+ .+
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs----------~~~a~~~a~~~~~~-g~-~~~~~~~~~~av-~~  189 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD----------PAKAEALAAELRAQ-GF-DAEVVTDLEAAV-RQ  189 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC----------HHHHHHHHHHHHhc-CC-ceEEeCCHHHHH-hc
Confidence            467899999999999999986654 554433366653          34444443331110 10 11222 122333 38


Q ss_pred             cceeeccccCC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750          328 CDVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPD  379 (457)
Q Consensus       328 ~DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD  379 (457)
                      |||++=|+...  +++.+.++. .+-+.+=|++.|...|.+..+.+++..|+=|
T Consensus       190 aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~vD~  242 (314)
T PRK06141        190 ADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYVDT  242 (314)
T ss_pred             CCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence            99998776532  344443322 4467778888888888887778888766544

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=90.77  E-value=4.8  Score=40.51  Aligned_cols=115  Identities=21%  Similarity=0.247  Sum_probs=70.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC----CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG----GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~  328 (457)
                      +++.++|+||+|+.++.-|.+.|    ..|+ |++.+          .+.+.++.++      |+.. ..++.+-+..++
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~----------~e~~~~l~~~------~g~~-~~~~~~~~~~~a   63 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNRS----------EEKRAALAAE------YGVV-TTTDNQEAVEEA   63 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCCC----------HHHHHHHHHH------cCCc-ccCcHHHHHhhC
Confidence            47999999999999999999988    3555 77763          3444334333      3222 123333445689


Q ss_pred             ceeeccccCCcccccccccc----cceEEEecCCCCCCHHHHHHHH-hCCCeEecccccccCC
Q 012750          329 DVLIPCALGGVLKRENAADV----KAKFIIEAANHPTDPEADEILS-KRGVTILPDIYANSGG  386 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~i----~akiIvEgAN~p~t~~a~~iL~-~rGI~viPD~laNaGG  386 (457)
                      |+++.|--...+ ++...++    +-|+|+--|=+-....-.+.|- .+=+.+.|..-+-.|-
T Consensus        64 dvv~LavKPq~~-~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~  125 (266)
T COG0345          64 DVVFLAVKPQDL-EEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGA  125 (266)
T ss_pred             CEEEEEeChHhH-HHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcC
Confidence            999988544322 2223333    4677777766544444555664 3335788987766553

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=90.68  E-value=0.56  Score=48.69  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=30.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .|.+|+|.|+|-+|..++++....|++|++++-+
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~  199 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS  199 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence            5899999999999999999999899999987644

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=90.64  E-value=6.2  Score=39.48  Aligned_cols=114  Identities=17%  Similarity=0.249  Sum_probs=68.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC----EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGG----KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE  327 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~  327 (457)
                      +++.++|+|++|+.+++-|.+.|.    +|+ ++|.+          .+.+.+..++.+       .+.. ++.+++ .+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~-v~~r~----------~~~~~~l~~~~g-------~~~~~~~~e~~-~~   63 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQII-CSDLN----------VSNLKNASDKYG-------ITITTNNNEVA-NS   63 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEE-EECCC----------HHHHHHHHHhcC-------cEEeCCcHHHH-hh
Confidence            479999999999999999988874    344 44542          344444333222       1222 233443 48


Q ss_pred             cceeeccccCCcccc---cccccccc-eEEEecCCCCCCHHHHHHHHh--CCCeEecccccccC
Q 012750          328 CDVLIPCALGGVLKR---ENAADVKA-KFIIEAANHPTDPEADEILSK--RGVTILPDIYANSG  385 (457)
Q Consensus       328 ~DIliPaA~~~~It~---~na~~i~a-kiIvEgAN~p~t~~a~~iL~~--rGI~viPD~laNaG  385 (457)
                      |||+|-|-....+.+   +..+.++. ++|+.-+-+-....-.+.|..  +=++++|-.-+-.|
T Consensus        64 aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg  127 (272)
T PRK12491         64 ADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVG  127 (272)
T ss_pred             CCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHc
Confidence            999998876533221   22222333 488888776554555566643  34578888766544

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=90.62  E-value=0.58  Score=55.21  Aligned_cols=114  Identities=17%  Similarity=0.204  Sum_probs=69.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC-CCE------------EEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe-
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHER-GGK------------VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD-  316 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~-Gak------------VVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~-  316 (457)
                      +.++|+|.|.|.||+..++.|.+. ++.            +|+|+|.+          .+.+.+..+.      +++.+ 
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~----------~~~a~~la~~------~~~~~~  631 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY----------LKDAKETVEG------IENAEA  631 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC----------HHHHHHHHHh------cCCCce
Confidence            467999999999999999999875 333            57788874          3444433332      22211 


Q ss_pred             -e--c-CCCcccc--cccceeeccccCCccccccccc---ccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 012750          317 -S--M-EPSELLA--HECDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEILSKRGVTILPDIY  381 (457)
Q Consensus       317 -~--i-~~~ell~--~~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~l  381 (457)
                       .  + +.+++..  .++|++|-|... ..+.+-+..   .+.-+++|.-..+-+.+.++.-+++|+.++|++-
T Consensus       632 v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G  704 (1042)
T PLN02819        632 VQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG  704 (1042)
T ss_pred             EEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc
Confidence             1  2 2244554  479999988654 344443332   4556777762222223334567788888888764

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=90.56  E-value=0.69  Score=47.31  Aligned_cols=117  Identities=21%  Similarity=0.168  Sum_probs=64.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc----
Q 012750          251 RDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA----  325 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~----  325 (457)
                      +..+|+|+|.|++|...+..+. ..+.++++++|.+.     +   .+ .++..++.|--..|.     +-++++.    
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~-----e---s~-gla~A~~~Gi~~~~~-----~ie~LL~~~~~   68 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDP-----E---SD-GLARARRLGVATSAE-----GIDGLLAMPEF   68 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCCh-----h---hH-HHHHHHHcCCCcccC-----CHHHHHhCcCC
Confidence            4578999999999998666555 45889999998742     1   11 112223222111111     1234554    


Q ss_pred             cccceeeccccCCcccccccccc---cceEEEec--CCCCC-CHHH--HHHHH--hCCCeEeccccc
Q 012750          326 HECDVLIPCALGGVLKRENAADV---KAKFIIEA--ANHPT-DPEA--DEILS--KRGVTILPDIYA  382 (457)
Q Consensus       326 ~~~DIliPaA~~~~It~~na~~i---~akiIvEg--AN~p~-t~~a--~~iL~--~rGI~viPD~la  382 (457)
                      .++|+++-|+. +..+.+++.+.   .+.+|.+-  +++|+ -|+.  ++.+.  ..++...|.-..
T Consensus        69 ~dIDiVf~AT~-a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~at  134 (302)
T PRK08300         69 DDIDIVFDATS-AGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQAT  134 (302)
T ss_pred             CCCCEEEECCC-HHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHH
Confidence            36899888864 34555655543   45555543  24452 2221  23333  346666665433

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=90.14  E-value=0.49  Score=48.53  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=29.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      |+|++|+|+|+|++|+.+|+-|.+.|.+|+...+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~   34 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLR   34 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEEC
Confidence            5789999999999999999999999988763333

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=90.13  E-value=0.84  Score=47.35  Aligned_cols=101  Identities=18%  Similarity=0.239  Sum_probs=58.7

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc
Q 012750          246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA  325 (457)
Q Consensus       246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~  325 (457)
                      +|-++.|+||.|.|+|..|+.+|+.|...|.+|. -+....       ...+...++-           ++.++-++++ 
T Consensus       156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~-y~~r~~-------~~~~~~~~~~-----------~~~~d~~~~~-  215 (336)
T KOG0069|consen  156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL-YHSRTQ-------LPPEEAYEYY-----------AEFVDIEELL-  215 (336)
T ss_pred             ccccccCCEEEEecCcHHHHHHHHhhhhccceee-eecccC-------CchhhHHHhc-----------ccccCHHHHH-
Confidence            4667999999999999999999999998884443 333321       2222222211           1123333444 


Q ss_pred             cccceeeccccCC-----cccccccccc-cceEEEecCCCCC-CHHHH
Q 012750          326 HECDVLIPCALGG-----VLKRENAADV-KAKFIIEAANHPT-DPEAD  366 (457)
Q Consensus       326 ~~~DIliPaA~~~-----~It~~na~~i-~akiIvEgAN~p~-t~~a~  366 (457)
                      ..+|+++-|-..+     .+|.+-.... +.-+||..|=+++ ..++.
T Consensus       216 ~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l  263 (336)
T KOG0069|consen  216 ANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEAL  263 (336)
T ss_pred             hhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHH
Confidence            3678887775433     2333333333 3347777777774 44443

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=90.06  E-value=0.3  Score=43.57  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=26.4

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +|.|.|.|.+|+.+++.|...|.+=+.+.|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999998444366653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.87  E-value=1.1  Score=44.84  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=27.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|.+|..+|..|...|..|+ +.|.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d~   35 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LNDV   35 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEE-EEeC
Confidence            579999999999999999999999987 5565

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=89.85  E-value=0.86  Score=46.92  Aligned_cols=44  Identities=30%  Similarity=0.419  Sum_probs=35.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHh
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKD  304 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~  304 (457)
                      ....+|+|.|.|-||.++|++..-.|++|+ |-|.          +++.|..+..
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vt-ild~----------n~~rl~~ldd  209 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVT-ILDL----------NIDRLRQLDD  209 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeE-EEec----------CHHHHhhhhH
Confidence            456689999999999999999999999987 7775          4666665544

>PRK14982 acyl-ACP reductase; Provisional

Probab=89.84  E-value=0.94  Score=47.09  Aligned_cols=132  Identities=20%  Similarity=0.292  Sum_probs=82.6

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHC-CC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhc
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHER-GG-KVIAVSDITGAVKNADGIDIHKLLAHKDKT  306 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~-Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~  306 (457)
                      .|.+-....++.+.+.+|.++++++|+|.|. |.+|+.+++.|.++ |. +++ +.+.+          .+.+.+...+.
T Consensus       133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R~----------~~rl~~La~el  201 (340)
T PRK14982        133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVARQ----------QERLQELQAEL  201 (340)
T ss_pred             hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcCC----------HHHHHHHHHHh
Confidence            4666666778888888899999999999998 89999999999754 64 666 44442          22333322221


Q ss_pred             CCcccCCCCeecCCCcccccccceeeccccC--C-cccccccccccceEEEecCCCC-CCHHHHHHHHhCCCeEeccccc
Q 012750          307 GSLKDFDGGDSMEPSELLAHECDVLIPCALG--G-VLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYA  382 (457)
Q Consensus       307 g~~~~~~~~~~i~~~ell~~~~DIliPaA~~--~-~It~~na~~i~akiIvEgAN~p-~t~~a~~iL~~rGI~viPD~la  382 (457)
                            ..+...+-++.+ .++|+++=|+-.  . .|+.+.+.  +-.+|++.|.-. +.|+..         - ||+..
T Consensus       202 ------~~~~i~~l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~v~---------~-~~V~v  262 (340)
T PRK14982        202 ------GGGKILSLEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTKVQ---------G-PGIHV  262 (340)
T ss_pred             ------ccccHHhHHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCcccC---------C-CCEEE
Confidence                  111111112333 268998877743  3 26665553  568999999854 555431         1 66666


Q ss_pred             ccCCceehh
Q 012750          383 NSGGVTVSY  391 (457)
Q Consensus       383 NaGGVi~S~  391 (457)
                      =-||++.-.
T Consensus       263 ~~gG~V~~p  271 (340)
T PRK14982        263 LKGGIVEHS  271 (340)
T ss_pred             EeCCccccC
Confidence            566765533

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=89.83  E-value=0.71  Score=45.99  Aligned_cols=106  Identities=15%  Similarity=0.222  Sum_probs=60.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecC-CCcccccccce
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME-PSELLAHECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~-~~ell~~~~DI  330 (457)
                      +||+|+|+|++|+..++.|.+. +..+++|++...     .   .+...+....        +....+ .+++ ..++|+
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~-----~---~~~~~~~~~~--------~~~~~~d~~~l-~~~~Dv   64 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEH-----S---IDAVRRALGE--------AVRVVSSVDAL-PQRPDL   64 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCC-----C---HHHHhhhhcc--------CCeeeCCHHHh-ccCCCE
Confidence            5899999999999999988765 688888885422     1   1111111100        111122 2345 667999


Q ss_pred             eeccccCCccccccccc-c--cceEEEecCCCCCCHH----HHHHHHhCCCeE
Q 012750          331 LIPCALGGVLKRENAAD-V--KAKFIIEAANHPTDPE----ADEILSKRGVTI  376 (457)
Q Consensus       331 liPaA~~~~It~~na~~-i--~akiIvEgAN~p~t~~----a~~iL~~rGI~v  376 (457)
                      ++.|+..... .+.+.. +  ++.++++-.=....++    -.+..+++|..+
T Consensus        65 Vve~t~~~~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l  116 (265)
T PRK13303         65 VVECAGHAAL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARL  116 (265)
T ss_pred             EEECCCHHHH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEE
Confidence            9999876533 444444 2  4567775211011222    234566778654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=89.82  E-value=1.2  Score=35.67  Aligned_cols=42  Identities=24%  Similarity=0.290  Sum_probs=34.4

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHH
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHK  298 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~  298 (457)
                      +|+|+|.|.+|-.+|..|.+.|.+|+ +.+....+.  ..+|.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~   42 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDA   42 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHH
Confidence            68999999999999999999999997 666666555  4566554

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08605 D-lactate dehydrogenase; Validated

Probab=89.81  E-value=0.42  Score=49.26  Aligned_cols=106  Identities=18%  Similarity=0.222  Sum_probs=65.4

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHH-HHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELL  324 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L-~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell  324 (457)
                      +.++.|++|.|+|+|++|+.+|+.| ...|.+|++ .|.+..         ....    .  .+      +.. +.++++
T Consensus       141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~-~d~~~~---------~~~~----~--~~------~~~~~l~ell  198 (332)
T PRK08605        141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVA-YDPFPN---------AKAA----T--YV------DYKDTIEEAV  198 (332)
T ss_pred             cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECCCcc---------HhHH----h--hc------cccCCHHHHH
Confidence            4468999999999999999999999 456889884 343210         0110    0  01      111 233444


Q ss_pred             ccccceeeccccCCcccc-----ccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCCe
Q 012750          325 AHECDVLIPCALGGVLKR-----ENAADVK-AKFIIEAANHPT-D-PEADEILSKRGVT  375 (457)
Q Consensus       325 ~~~~DIliPaA~~~~It~-----~na~~i~-akiIvEgAN~p~-t-~~a~~iL~~rGI~  375 (457)
                       .+||+++-|...+..|.     +....++ -.+++.-+-+.. . .+-.+.|.+..|.
T Consensus       199 -~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  256 (332)
T PRK08605        199 -EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK  256 (332)
T ss_pred             -HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence             37899998876554443     2233332 358888888874 3 3344677766663

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=89.80  E-value=0.55  Score=49.25  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++.+|+|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            678899999999999999999999998555588765

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=89.79  E-value=0.63  Score=44.72  Aligned_cols=53  Identities=26%  Similarity=0.300  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH--HHCCCEEEEEECCC
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI--HERGGKVIAVSDIT  285 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~  285 (457)
                      ||=|...++.+-+.+|.. ...+++|.|.|++|..+++.+  .+.|++++|+.|.+
T Consensus        65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            455555555554456666 567999999999999999864  35689999999874

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=89.74  E-value=0.55  Score=48.51  Aligned_cols=35  Identities=20%  Similarity=0.400  Sum_probs=30.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  285 (457)
                      +..||+|.|+|++|+..++.+.+. +..++||.|.+
T Consensus         2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~   37 (324)
T TIGR01921         2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR   37 (324)
T ss_pred             CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence            347999999999999999988764 89999999986

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=89.73  E-value=3  Score=43.18  Aligned_cols=33  Identities=15%  Similarity=0.411  Sum_probs=28.9

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~  285 (457)
                      .||+|.|||.+|+.+++.+.+ .+.+|+||+|.+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~   35 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK   35 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            489999999999999998875 578999999864

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=89.59  E-value=3.2  Score=43.30  Aligned_cols=32  Identities=34%  Similarity=0.340  Sum_probs=27.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .||+|=|||-+|+.+.|.+.+. +..||+|-|.
T Consensus         3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~   35 (342)
T PTZ00353          3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA   35 (342)
T ss_pred             eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC
Confidence            5899999999999999987654 6899999874

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=89.55  E-value=4.6  Score=43.73  Aligned_cols=37  Identities=35%  Similarity=0.563  Sum_probs=31.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHC-----CCEEEEEECCCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHER-----GGKVIAVSDITG  286 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~-----GakVVaVsD~~G  286 (457)
                      .+.++|+|=|||-+|+.++|.+.++     +.+||||-+..+
T Consensus       125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n  166 (477)
T PRK08289        125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG  166 (477)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence            5678999999999999999998764     579999977654

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=89.53  E-value=0.66  Score=47.41  Aligned_cols=172  Identities=20%  Similarity=0.204  Sum_probs=94.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD  329 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~D  329 (457)
                      ....+|--+|.|++|++.+..|...|++|+ |-|.          +.+...++.+.+.++.+-       |.|+- .+||
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVt-V~dr----------~~~k~~~f~~~Ga~v~~s-------PaeVa-e~sD   93 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVT-VYDR----------TKDKCKEFQEAGARVANS-------PAEVA-EDSD   93 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEE-EEeC----------cHHHHHHHHHhchhhhCC-------HHHHH-hhcC
Confidence            456789999999999999999999999998 6664          467777777776666553       33333 3677


Q ss_pred             eeecccc-----CCcccccccccc-----cceEEEecCCC-C-CCHHHHHHHHhCCCeEecccccccCCcee--------
Q 012750          330 VLIPCAL-----GGVLKRENAADV-----KAKFIIEAANH-P-TDPEADEILSKRGVTILPDIYANSGGVTV--------  389 (457)
Q Consensus       330 IliPaA~-----~~~It~~na~~i-----~akiIvEgAN~-p-~t~~a~~iL~~rGI~viPD~laNaGGVi~--------  389 (457)
                      ++|-|-.     ..++...+- -+     ..+..++..-. | ++.|-.+.+..+|-.++---+  +|||--        
T Consensus        94 vvitmv~~~~~v~~v~~g~~G-vl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPV--SGg~~~A~~G~Lti  170 (327)
T KOG0409|consen   94 VVITMVPNPKDVKDVLLGKSG-VLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPV--SGGVKGAEEGTLTI  170 (327)
T ss_pred             EEEEEcCChHhhHHHhcCCCc-ceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccc--cCCchhhhcCeEEE
Confidence            7765521     111112111 01     11222333221 2 234445566777776654332  344421        


Q ss_pred             ------hhHHHhhhcccC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 012750          390 ------SYFEWVQNIQGF-------------MWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGV  443 (457)
Q Consensus       390 ------S~~E~~qn~~~~-------------~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~  443 (457)
                            +-|||.+-.-..             .-.-.-+++.+-...--.+.+-+..+++.|++.++-+.++-.
T Consensus       171 magGde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~  243 (327)
T KOG0409|consen  171 MAGGDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNT  243 (327)
T ss_pred             EecCcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence                  344554332100             000112234443433445556667777888888776665543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=89.38  E-value=1.4  Score=49.35  Aligned_cols=111  Identities=23%  Similarity=0.274  Sum_probs=67.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc----cc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA----HE  327 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~----~~  327 (457)
                      ..+|+|.|||.+|+.+++.|.+.|.+++ +-|.          |.+.+.+.++. |.-.-|-++   +..++|+    .+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GDa---t~~~~L~~agi~~  464 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMT-VLDH----------DPDHIETLRKF-GMKVFYGDA---TRMDLLESAGAAK  464 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhc-CCeEEEEeC---CCHHHHHhcCCCc
Confidence            3689999999999999999999999988 4465          34555444332 211111111   2233442    27


Q ss_pred             cceeeccccCCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCCeEe-cccc
Q 012750          328 CDVLIPCALGGVLKR---ENAADV--KAKFIIEAANHPTDPEADEILSKRGVTIL-PDIY  381 (457)
Q Consensus       328 ~DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~~a~~iL~~rGI~vi-PD~l  381 (457)
                      +|.+|-|.-.+..|.   .++.+.  +.++|+=.    .+++....|++.|+-.+ |...
T Consensus       465 A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa----~d~~~~~~L~~~Gad~v~~e~~  520 (621)
T PRK03562        465 AEVLINAIDDPQTSLQLVELVKEHFPHLQIIARA----RDVDHYIRLRQAGVEKPERETF  520 (621)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEE----CCHHHHHHHHHCCCCEEehhhH
Confidence            888887754333222   223332  45677743    34567788999999654 5443

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=89.25  E-value=5.1  Score=41.63  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=27.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .+|+|.|||.+|+.+.+.+.+. ..+|+++-|.
T Consensus         3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~   35 (334)
T PRK08955          3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP   35 (334)
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            5899999999999999987754 5899988764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.18  E-value=0.63  Score=49.86  Aligned_cols=41  Identities=29%  Similarity=0.336  Sum_probs=35.0

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+++.++++++|+|.|.|..|..+|+.|.++|.+|+ ++|.+
T Consensus         8 ~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~~   48 (480)
T PRK01438          8 TSWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDDG   48 (480)
T ss_pred             hhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            345667889999999999999999999999999977 66653

>PLN02688 pyrroline-5-carboxylate reductase

Probab=89.11  E-value=1.2  Score=43.80  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC----EEEEEE-CC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGG----KVIAVS-DI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVs-D~  284 (457)
                      ++|.++|+|++|+.+++-|.+.|.    +|+ ++ |.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~r   36 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADDS   36 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeCC
Confidence            479999999999999999999887    666 44 44

>PLN02858 fructose-bisphosphate aldolase

Probab=88.76  E-value=0.99  Score=54.96  Aligned_cols=170  Identities=17%  Similarity=0.156  Sum_probs=93.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccce
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDV  330 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DI  330 (457)
                      .++|.++|+|++|..+|+-|...|.+|+ +.|.+          .+.+.+.... +       +... ++.++. .+||+
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-G-------a~~~~s~~e~~-~~aDv  383 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVC-GYDVY----------KPTLVRFENA-G-------GLAGNSPAEVA-KDVDV  383 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHHH-hcCCE
Confidence            3789999999999999999999999886 55542          3344333332 1       1111 233333 47999


Q ss_pred             eeccccC-----Cccccc--ccccc-cceEEEecCCC-C-CCHHHHHHHHh--CCCeEecccc------cccCCc--eeh
Q 012750          331 LIPCALG-----GVLKRE--NAADV-KAKFIIEAANH-P-TDPEADEILSK--RGVTILPDIY------ANSGGV--TVS  390 (457)
Q Consensus       331 liPaA~~-----~~It~~--na~~i-~akiIvEgAN~-p-~t~~a~~iL~~--rGI~viPD~l------aNaGGV--i~S  390 (457)
                      ++-|-..     .++..+  -++.+ .-++|++-... | .+.+..+.+.+  +|+.++=--+      +..|-.  +++
T Consensus       384 Vi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvg  463 (1378)
T PLN02858        384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMAS  463 (1378)
T ss_pred             EEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEE
Confidence            9877542     222111  12222 23566665543 3 34556677888  9998763322      122221  111


Q ss_pred             ----hHHHhhhc----c-cCCC-C----HH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012750          391 ----YFEWVQNI----Q-GFMW-E----ED----KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTL  441 (457)
Q Consensus       391 ----~~E~~qn~----~-~~~w-~----~e----~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  441 (457)
                          .|+.++.+    . ..++ -    .-    -++..+.......+.+.+..+++.|+++.+...++
T Consensus       464 G~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl  532 (1378)
T PLN02858        464 GTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII  532 (1378)
T ss_pred             CCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence                23332221    1 1111 1    11    22333444445566778888899999988766543

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=88.50  E-value=0.43  Score=52.07  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=28.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|+|+|.|.+|+..|..|...|..|+ +.|.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~-l~D~~   39 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVL-LYDAR   39 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence            579999999999999999999999998 66764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.38  E-value=1.1  Score=49.13  Aligned_cols=105  Identities=14%  Similarity=0.198  Sum_probs=59.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc----cccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell----~~~~  328 (457)
                      .+++|.|+|++|+.+++.|.++|..++ +-|.          |.+.+.+.++..-.+ -+-++   ++.+.|    -.++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~----------d~~~~~~~~~~g~~~-i~GD~---~~~~~L~~a~i~~a  482 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIET----------SRTRVDELRERGIRA-VLGNA---ANEEIMQLAHLDCA  482 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEE-EEEC----------CHHHHHHHHHCCCeE-EEcCC---CCHHHHHhcCcccc
Confidence            478999999999999999999999988 4454          244554444321111 01011   222333    1277


Q ss_pred             ceeeccccCCcccc---ccccc--ccceEEEecCCCCCCHHHHHHHHhCCCeE
Q 012750          329 DVLIPCALGGVLKR---ENAAD--VKAKFIIEAANHPTDPEADEILSKRGVTI  376 (457)
Q Consensus       329 DIliPaA~~~~It~---~na~~--i~akiIvEgAN~p~t~~a~~iL~~rGI~v  376 (457)
                      |.++=+...+.-+.   ..+.+  -.+++|+=. |   +++..+.|++-|+-+
T Consensus       483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~-~---~~~~~~~l~~~Gad~  531 (558)
T PRK10669        483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARA-H---YDDEVAYITERGANQ  531 (558)
T ss_pred             CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE-C---CHHHHHHHHHcCCCE
Confidence            86665533321110   01111  245777743 2   567788899888643

>PLN02712 arogenate dehydrogenase

Probab=88.34  E-value=0.8  Score=51.70  Aligned_cols=39  Identities=28%  Similarity=0.419  Sum_probs=33.4

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          245 EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .++.++++++|.|+|+|++|+.+|+.|.+.|.+|++ .|.
T Consensus       362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~-~dr  400 (667)
T PLN02712        362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLA-YSR  400 (667)
T ss_pred             hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEE-EEC
Confidence            346678999999999999999999999999999884 444

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=88.24  E-value=0.71  Score=44.24  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=31.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+..+|.|+|.|-+|+.+|..|.+.|..=+.+.|.+
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            788999999999999999999999998534377765

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=88.23  E-value=0.42  Score=52.12  Aligned_cols=32  Identities=28%  Similarity=0.478  Sum_probs=28.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|+|+|.|.+|+.+|..|...|..|+ +.|.+
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~-l~d~~   37 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVL-LYDIR   37 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence            579999999999999999999999998 66653

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.18  E-value=1.4  Score=45.07  Aligned_cols=52  Identities=21%  Similarity=0.240  Sum_probs=42.6

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH----CCCEEEEEECC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHE----RGGKVIAVSDI  284 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~----~GakVVaVsD~  284 (457)
                      .++|..|+.    +++++++.+++|++|+|+| ...||+-++.+|.+    +++.|. ++.+
T Consensus       139 ~PcTp~ail----~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs  195 (295)
T PRK14174        139 VSCTPYGIL----ELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHS  195 (295)
T ss_pred             CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeC
Confidence            468999884    4566779999999999999 57799999999987    688876 6655

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=88.13  E-value=1.3  Score=45.35  Aligned_cols=109  Identities=20%  Similarity=0.237  Sum_probs=65.3

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS  308 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~  308 (457)
                      +||.-.++++.    +.|..-.|.+|+|.+ .|.||+.+.++-.-+|++|||++-+.           ++..-.+++-|-
T Consensus       133 mpG~TAY~gLl----~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~-----------eK~~~l~~~lGf  197 (340)
T COG2130         133 MPGLTAYFGLL----DIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA-----------EKCDFLTEELGF  197 (340)
T ss_pred             CchHHHHHHHH----HhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCH-----------HHHHHHHHhcCC
Confidence            45544445543    446667899999998 59999888776666899999998762           222211221111


Q ss_pred             --cccCCCCeecCCCcccc----cccceeeccccCCcccccccc--cccceEEEecC
Q 012750          309 --LKDFDGGDSMEPSELLA----HECDVLIPCALGGVLKRENAA--DVKAKFIIEAA  357 (457)
Q Consensus       309 --~~~~~~~~~i~~~ell~----~~~DIliPaA~~~~It~~na~--~i~akiIvEgA  357 (457)
                        .-+|...   +..+-|.    --.||++++-.+++.+. -.+  +.+||+++.|+
T Consensus       198 D~~idyk~~---d~~~~L~~a~P~GIDvyfeNVGg~v~DA-v~~~ln~~aRi~~CG~  250 (340)
T COG2130         198 DAGIDYKAE---DFAQALKEACPKGIDVYFENVGGEVLDA-VLPLLNLFARIPVCGA  250 (340)
T ss_pred             ceeeecCcc---cHHHHHHHHCCCCeEEEEEcCCchHHHH-HHHhhccccceeeeee
Confidence              1122111   1122232    25699999966555443 223  35899999987

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=88.12  E-value=0.58  Score=48.64  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=28.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ...+|+|+||||+|+..|+.|.+.|..++ ++|.
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li-~hsR   83 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSR   83 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeE-ecCc
Confidence            45789999999999999999999999998 4554

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=88.10  E-value=1.8  Score=43.11  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=43.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      ++|.|+|.|.+|+.++..|.++|.+|++ .|.+          .+.+.+..+ .+.+...     .++.+. -.+||++|
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~-~d~~----------~~~~~~a~~-~g~~~~~-----~~~~~~-~~~aDlVi   62 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYG-VSRR----------ESTCERAIE-RGLVDEA-----STDLSL-LKDCDLVI   62 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEE-EECC----------HHHHHHHHH-CCCcccc-----cCCHhH-hcCCCEEE
Confidence            3799999999999999999999998874 4442          233333222 2322211     112222 24899999


Q ss_pred             ccccCCcc
Q 012750          333 PCALGGVL  340 (457)
Q Consensus       333 PaA~~~~I  340 (457)
                      -|.....+
T Consensus        63 lavp~~~~   70 (279)
T PRK07417         63 LALPIGLL   70 (279)
T ss_pred             EcCCHHHH
Confidence            99765443

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=88.06  E-value=0.43  Score=49.43  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=32.5

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEE
Q 012750          246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIA  280 (457)
Q Consensus       246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVa  280 (457)
                      +|.++.|+|++|.|||.+|+.+|+.+...|.++|+
T Consensus       140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~  174 (406)
T KOG0068|consen  140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG  174 (406)
T ss_pred             eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence            46789999999999999999999999999999985

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=87.83  E-value=4.5  Score=43.52  Aligned_cols=32  Identities=38%  Similarity=0.537  Sum_probs=27.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      .||+|=|||-+|+.+.|.+.+.   ..+||+|-|.
T Consensus        76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~  110 (442)
T PLN02237         76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  110 (442)
T ss_pred             EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC
Confidence            6899999999999999987643   5899999774

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.82  E-value=0.88  Score=48.11  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++|+++.|.|.|..|..+|++|.+.|++|+ ++|.+
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~~   37 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDGK   37 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence            3678999999999999999999999999988 67764

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=87.78  E-value=1.3  Score=44.88  Aligned_cols=53  Identities=28%  Similarity=0.316  Sum_probs=45.0

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+.|-+|++..    +++++.++.|++++|+|-+| ||+-++.+|...++.|. |+.+.
T Consensus       136 ~PCTp~gi~~l----l~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs~  189 (283)
T COG0190         136 LPCTPAGIMTL----LEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHSR  189 (283)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcCC
Confidence            47899888654    56679999999999999655 89999999999999987 88774

>PRK06046 alanine dehydrogenase; Validated

Probab=87.64  E-value=4.2  Score=41.69  Aligned_cols=115  Identities=18%  Similarity=0.127  Sum_probs=68.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC  328 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~  328 (457)
                      .-.++.|+|.|..|++.++.|. -.+.+.|.|.|.+          .+...+..++-....++ ..... +.+++++  +
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~----------~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~--a  194 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT----------KSSAEKFVERMSSVVGC-DVTVAEDIEEACD--C  194 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC----------HHHHHHHHHHHHhhcCc-eEEEeCCHHHHhh--C
Confidence            4568999999999999998776 3578888888774          23333333321100000 01112 2345554  9


Q ss_pred             ceeeccccCC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEeccc
Q 012750          329 DVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDI  380 (457)
Q Consensus       329 DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~  380 (457)
                      ||++=|+...  ++..+.+ +=.+-+..=|++-|-..|.+..+-++.- ++-|-
T Consensus       195 DiVv~aTps~~P~~~~~~l-~~g~hV~~iGs~~p~~~El~~~~~~~a~-vvvD~  246 (326)
T PRK06046        195 DILVTTTPSRKPVVKAEWI-KEGTHINAIGADAPGKQELDPEILLRAK-VVVDD  246 (326)
T ss_pred             CEEEEecCCCCcEecHHHc-CCCCEEEecCCCCCccccCCHHHHhCCc-EEECC
Confidence            9999887542  2333333 2255678889998866666655555553 33354

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=87.56  E-value=0.74  Score=47.68  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=32.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |++++|+|+|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            788999999999999999999999998656688875

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.56  E-value=0.77  Score=49.39  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=32.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|++|+|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~~   40 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLFC   40 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcCC
Confidence            568899999999999999999999999988 78864

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=87.51  E-value=0.5  Score=46.91  Aligned_cols=35  Identities=29%  Similarity=0.594  Sum_probs=29.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |+..+|+|.|.|-||+|+++.|.+.|..=+.+-|-
T Consensus        28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~   62 (263)
T COG1179          28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM   62 (263)
T ss_pred             HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence            67889999999999999999999999744435554

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=87.26  E-value=0.6  Score=41.27  Aligned_cols=34  Identities=29%  Similarity=0.338  Sum_probs=28.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+||+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            5799999999999999999999998555577764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.19  E-value=0.5  Score=47.57  Aligned_cols=30  Identities=23%  Similarity=0.329  Sum_probs=27.3

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+|+|.|.+|+..|..|+..|..|+ +.|.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~   36 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVL-VFET   36 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEE-EEEC
Confidence            89999999999999999999999988 5565

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=87.13  E-value=0.57  Score=47.90  Aligned_cols=54  Identities=20%  Similarity=0.329  Sum_probs=42.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCee-eC---CCCCCHHHHHHhHh
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAV-KN---ADGIDIHKLLAHKD  304 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i-yn---p~GLDi~~L~~~~~  304 (457)
                      |+|++|+|+|+|+=|.+=|.-|.+.|..|+ |.=..|+. +.   .+|+++..+.+..+
T Consensus        16 LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~v~ea~k   73 (338)
T COG0059          16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYTVEEAAK   73 (338)
T ss_pred             hcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeecHHHHhh
Confidence            899999999999999999999999999877 76666654 33   57776666555444

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=86.94  E-value=0.85  Score=45.87  Aligned_cols=36  Identities=33%  Similarity=0.614  Sum_probs=30.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |++.+|+|+|.|.||+++|+.|.+.|..=+.+.|.+
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            788999999999999999999999995434477764

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.88  E-value=0.67  Score=46.39  Aligned_cols=31  Identities=29%  Similarity=0.267  Sum_probs=27.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|.+|+.+|..|.+.|.+|+ +.|.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d~   34 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYDI   34 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEE-EEeC
Confidence            479999999999999999999999987 4454

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=86.71  E-value=0.93  Score=44.00  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=31.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+..+|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            678899999999999999999999998666677764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=86.68  E-value=1.1  Score=46.88  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=31.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++.+|+|+|.|-+|+.+++.|...|..=+.+.|.+
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            789999999999999999999999998655577764

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=86.66  E-value=1.8  Score=43.27  Aligned_cols=115  Identities=15%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC----CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG----GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE  327 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~  327 (457)
                      .++.|+|+|++|+.+++.|.+.|    .+|+.+..+.          .+.+......      +++.... +..+++ .+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~----------~~~~~~l~~~------~~~~~~~~~~~e~~-~~   64 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK----------NEHFNQLYDK------YPTVELADNEAEIF-TK   64 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc----------HHHHHHHHHH------cCCeEEeCCHHHHH-hh
Confidence            37999999999999999999888    5676443321          1222222221      2111211 222333 48


Q ss_pred             cceeeccccCCcccc---ccccccc-ceEEEecCCCCCCHHHHHHHHh-CCCeEeccccccc
Q 012750          328 CDVLIPCALGGVLKR---ENAADVK-AKFIIEAANHPTDPEADEILSK-RGVTILPDIYANS  384 (457)
Q Consensus       328 ~DIliPaA~~~~It~---~na~~i~-akiIvEgAN~p~t~~a~~iL~~-rGI~viPD~laNa  384 (457)
                      ||++|-|.....+.+   +-.+.++ -++|+--+|+-...+-.+.|.. +=|.+.|-.-+-.
T Consensus        65 aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~  126 (277)
T PRK06928         65 CDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAV  126 (277)
T ss_pred             CCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHH
Confidence            999998865443221   1112232 2477878887655566666643 3347788655443

>PRK04148 hypothetical protein; Provisional

Probab=86.56  E-value=1.5  Score=39.78  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=29.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .++++++++|.| -|..+|..|.+.|..|+| .|.+
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Via-IDi~   48 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIV-IDIN   48 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHHCCCEEEE-EECC
Confidence            467899999999 888899999999999995 5653

>PLN02858 fructose-bisphosphate aldolase

Probab=86.56  E-value=2.2  Score=52.08  Aligned_cols=172  Identities=13%  Similarity=0.062  Sum_probs=98.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD  329 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D  329 (457)
                      ...+|.++|+|++|..+|+-|.+.|+.|. |.|.+          .+...++.+.+        +... ++.++. ..||
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~-v~dr~----------~~~~~~l~~~G--------a~~~~s~~e~a-~~ad   62 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQ-AFEIS----------TPLMEKFCELG--------GHRCDSPAEAA-KDAA   62 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHcC--------CeecCCHHHHH-hcCC
Confidence            35689999999999999999999999987 55553          34444444432        2222 233333 4789


Q ss_pred             eeeccccCCcccccc-------cccc-cceEEEecC-CCC-CCHHHHHHHHhCC--CeEecccc------cccCCcee--
Q 012750          330 VLIPCALGGVLKREN-------AADV-KAKFIIEAA-NHP-TDPEADEILSKRG--VTILPDIY------ANSGGVTV--  389 (457)
Q Consensus       330 IliPaA~~~~It~~n-------a~~i-~akiIvEgA-N~p-~t~~a~~iL~~rG--I~viPD~l------aNaGGVi~--  389 (457)
                      ++|-|-.......+-       +..+ .-++|++-. ..| .+.+..+.+.++|  +.++=--+      +.+|-++.  
T Consensus        63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imv  142 (1378)
T PLN02858         63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIA  142 (1378)
T ss_pred             EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEE
Confidence            998886443222111       2223 235666655 444 4566777899999  76653222      22233221  


Q ss_pred             ----hhHHHhhhc----c-cCCC--C-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750          390 ----SYFEWVQNI----Q-GFMW--E-------EDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG  442 (457)
Q Consensus       390 ----S~~E~~qn~----~-~~~w--~-------~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  442 (457)
                          ..+|-++.+    . ..++  .       -.-++..+...+..++.+-+..+++.|+++.....++.
T Consensus       143 GG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~  213 (1378)
T PLN02858        143 SGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIIS  213 (1378)
T ss_pred             cCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence                123333221    1 1111  1       12234445555556777888889999999887776654

>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]

Probab=86.39  E-value=0.72  Score=46.43  Aligned_cols=55  Identities=33%  Similarity=0.336  Sum_probs=46.2

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCe
Q 012750          229 AATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGA  287 (457)
Q Consensus       229 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~  287 (457)
                      ++|-.|++.    .++++|+.+.|++++|.| .=+||.-+|-+|+..|+.+-.+-|.+-+
T Consensus       147 PcTP~gv~e----iL~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVt  202 (309)
T KOG0089|consen  147 PCTPLGVVE----ILERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVT  202 (309)
T ss_pred             CCchHHHHH----HHHHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEE
Confidence            689999865    456779999999999999 6899999999999999988766665433

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.30  E-value=1.1  Score=47.39  Aligned_cols=36  Identities=25%  Similarity=0.437  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++++++|.|.|.|.+|..+|+.|.+.|++|+ ++|.+
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~~   37 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDEK   37 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            4688999999999999999999999999988 56654

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=86.09  E-value=0.82  Score=46.31  Aligned_cols=43  Identities=33%  Similarity=0.509  Sum_probs=34.6

Q ss_pred             HHHHhCC-----CCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCC
Q 012750          242 LLAEHGQ-----AIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDIT  285 (457)
Q Consensus       242 ~l~~~g~-----~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~  285 (457)
                      +|+++|+     .++.+.|+|+|.|.||+-+|++|.+.|. |++ ..|.+
T Consensus        67 ALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLl-LfDYD  115 (422)
T KOG2336|consen   67 ALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLL-LFDYD  115 (422)
T ss_pred             HHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEE-Eeecc
Confidence            4556675     2788999999999999999999999996 555 56653

>PRK05717 oxidoreductase; Validated

Probab=86.01  E-value=1.4  Score=42.38  Aligned_cols=36  Identities=17%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++|++++|.| .|.+|+++|+.|.++|++|+. .|.
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~-~~~   42 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVL-ADL   42 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEE-EcC
Confidence            458899999998 599999999999999999984 444

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=85.73  E-value=1.7  Score=43.46  Aligned_cols=42  Identities=24%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC---------CCEEEEEECCCCeeeCCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHER---------GGKVIAVSDITGAVKNAD  292 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~---------GakVVaVsD~~G~iynp~  292 (457)
                      +...|++.|+|+||+++...+...         .+.||+|+|+.+.+...|
T Consensus         2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD   52 (364)
T KOG0455|consen    2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKD   52 (364)
T ss_pred             ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccc
Confidence            346799999999999998776532         248999999988665433

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=85.72  E-value=2.5  Score=38.55  Aligned_cols=30  Identities=27%  Similarity=0.379  Sum_probs=25.8

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+|.|.|+.|..+|..|.++|.+|. +.+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~-l~~~   30 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVT-LWGR   30 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEE-EETS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEE-EEec
Confidence            58999999999999999999998876 4433

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02256 arogenate dehydrogenase

Probab=85.62  E-value=1.9  Score=43.95  Aligned_cols=34  Identities=38%  Similarity=0.610  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +.++++|+|+|+|++|+.+++.|.+.|.+|+++.
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d   66 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATS   66 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence            3577899999999999999999999998888543

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.42  E-value=1.2  Score=45.96  Aligned_cols=47  Identities=28%  Similarity=0.365  Sum_probs=35.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEE
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAV  281 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaV  281 (457)
                      .-.||||.+.-+      -.. -+|.+++|.|.|.||..+++-....|| ||+||
T Consensus       176 GvsTG~GAa~~~------Akv-~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv  223 (375)
T KOG0022|consen  176 GVSTGYGAAWNT------AKV-EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV  223 (375)
T ss_pred             cccccchhhhhh------ccc-CCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence            357999874321      112 478999999999999999987777786 78865

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=85.37  E-value=0.78  Score=47.71  Aligned_cols=112  Identities=28%  Similarity=0.376  Sum_probs=59.3

Q ss_pred             EEEEecChHHHHHHHHHHHCCC--EEEEEECCCCeeeCCCCCCHHHHHHhHhh--cCCcccCCCCeecC--C-Cccc--c
Q 012750          255 FVIQGFGNVGSWAARLIHERGG--KVIAVSDITGAVKNADGIDIHKLLAHKDK--TGSLKDFDGGDSME--P-SELL--A  325 (457)
Q Consensus       255 vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~iynp~GLDi~~L~~~~~~--~g~~~~~~~~~~i~--~-~ell--~  325 (457)
                      |.|.|.|.||+.+++.|.+.+-  +|+ |+|.+          .+.+.+..++  ...+.    ...++  + +++-  -
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~r~----------~~~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~   65 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVT-VADRN----------PEKAERLAEKLLGDRVE----AVQVDVNDPESLAELL   65 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEE-EEESS----------HHHHHHHHT--TTTTEE----EEE--TTTHHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEECC----------HHHHHHHHhhcccccee----EEEEecCCHHHHHHHH
Confidence            6789999999999999998764  565 77773          5666555543  11111    01122  2 2222  2


Q ss_pred             cccceeeccccCCccccccc---ccccceEEEecCCCCCCH---HHHHHHHhCCCeEecccccccC
Q 012750          326 HECDVLIPCALGGVLKRENA---ADVKAKFIIEAANHPTDP---EADEILSKRGVTILPDIYANSG  385 (457)
Q Consensus       326 ~~~DIliPaA~~~~It~~na---~~i~akiIvEgAN~p~t~---~a~~iL~~rGI~viPD~laNaG  385 (457)
                      .+||++|-|+... .+..-+   -+.++.+|= -+.  .++   +-++..+++|+.++++.=.+.|
T Consensus        66 ~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG  127 (386)
T PF03435_consen   66 RGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG  127 (386)
T ss_dssp             TTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred             hcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence            3889999998654 332222   223555554 111  122   2235667889999888765554

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.00  E-value=1.4  Score=44.70  Aligned_cols=34  Identities=32%  Similarity=0.280  Sum_probs=29.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+++|.|.|.|++|+.+|+.|.+.|.+|+ +.|++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~   36 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSRR   36 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            46789999999999999999999999987 55554

>PRK08618 ornithine cyclodeaminase; Validated

Probab=84.98  E-value=7.1  Score=39.98  Aligned_cols=116  Identities=16%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCC-CCeecCC-Ccccccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD-GGDSMEP-SELLAHE  327 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~-~~~~i~~-~ell~~~  327 (457)
                      ..++++|.|.|..|+..+..+. ..+.+-|.|.|.+          .+...++.++-..  .++ .....++ ++.+ .+
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~-~~  192 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT----------FEKAYAFAQEIQS--KFNTEIYVVNSADEAI-EE  192 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC----------HHHHHHHHHHHHH--hcCCcEEEeCCHHHHH-hc
Confidence            5678999999999998887765 4688888788764          2333333221100  011 0112222 3334 48


Q ss_pred             cceeeccccCC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 012750          328 CDVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIY  381 (457)
Q Consensus       328 ~DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~l  381 (457)
                      +||++-|+...  .++ +-+ +-.+-+++=|++.|--.|.+..+-++.-.++-|..
T Consensus       193 aDiVi~aT~s~~p~i~-~~l-~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~~  246 (325)
T PRK08618        193 ADIIVTVTNAKTPVFS-EKL-KKGVHINAVGSFMPDMQELPSEAIARANKVVVESK  246 (325)
T ss_pred             CCEEEEccCCCCcchH-Hhc-CCCcEEEecCCCCcccccCCHHHHhhCCEEEECCH
Confidence            99999887543  333 222 33667888899988655555444444434444543

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.82  E-value=1.3  Score=47.30  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=31.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +.+++|.|.|+|.-|..+|++|.+.|++|. ++|.+
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~   46 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDKK   46 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECCC
Confidence            567899999999999999999999999987 78864

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=84.80  E-value=0.47  Score=51.10  Aligned_cols=30  Identities=20%  Similarity=0.298  Sum_probs=27.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEE
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVI  279 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVV  279 (457)
                      |+|++|+|+|+|+.|+.-|.-|...|.+|+
T Consensus        34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv   63 (487)
T PRK05225         34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDIS   63 (487)
T ss_pred             hCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence            899999999999999988888888898887

>PRK06153 hypothetical protein; Provisional

Probab=84.78  E-value=0.61  Score=49.27  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=30.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |++.+|+|+|.|-+|+.++..|.+.|.+=+.+.|.+
T Consensus       174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            688999999999999999999999997444466654

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=84.54  E-value=1.8  Score=44.25  Aligned_cols=34  Identities=29%  Similarity=0.395  Sum_probs=28.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCC--EEEEEECCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~  285 (457)
                      ++.+|+|+|.|+||+.+|..|...|.  .++ +.|.+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~-L~D~~   40 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELV-IIDIN   40 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence            56799999999999999999988886  444 66763

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=84.19  E-value=3  Score=40.91  Aligned_cols=88  Identities=24%  Similarity=0.276  Sum_probs=49.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC---CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG---GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~  328 (457)
                      ++++|+|+|++|+.+++.|.+.|   ..|. +.|.+          .+.+.+..+..+ +      ... ++.+++ .+|
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~-v~~r~----------~~~~~~~~~~~g-~------~~~~~~~~~~-~~a   63 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDII-VSDPS----------PEKRAALAEEYG-V------RAATDNQEAA-QEA   63 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEE-EEcCC----------HHHHHHHHHhcC-C------eecCChHHHH-hcC
Confidence            57999999999999999999888   3443 55542          233333332211 1      111 223343 478


Q ss_pred             ceeeccccCCccccccccccc---ceEEEecCCCC
Q 012750          329 DVLIPCALGGVLKRENAADVK---AKFIIEAANHP  360 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~i~---akiIvEgAN~p  360 (457)
                      |+++-|.....+. +-++.++   -++|+--.|+-
T Consensus        64 dvVil~v~~~~~~-~v~~~l~~~~~~~vvs~~~gi   97 (267)
T PRK11880         64 DVVVLAVKPQVME-EVLSELKGQLDKLVVSIAAGV   97 (267)
T ss_pred             CEEEEEcCHHHHH-HHHHHHHhhcCCEEEEecCCC
Confidence            9998886543321 1111111   24667666653

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=84.03  E-value=36  Score=36.46  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=26.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..++|+|+|.|.||..+|..|.+ |..|++ .|.
T Consensus         5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g-~D~   36 (425)
T PRK15182          5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVG-FDV   36 (425)
T ss_pred             CCCeEEEECcCcchHHHHHHHhc-CCEEEE-EeC
Confidence            34789999999999999999876 689884 554

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=84.00  E-value=6.4  Score=41.85  Aligned_cols=123  Identities=19%  Similarity=0.289  Sum_probs=74.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC-----------CeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT-----------GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPS  321 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~-----------G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~  321 (457)
                      ++++|.|.|=||...+-.|++.|..||+| |.+           --||+|.   +++|++.....|++.-      .++.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~v-Did~~KV~~ln~g~~PI~Epg---Le~ll~~~~~~gRl~f------Ttd~   70 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCV-DIDESKVELLNKGISPIYEPG---LEELLKENLASGRLRF------TTDY   70 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHhCCCCCCcCcc---HHHHHHhccccCcEEE------EcCH
Confidence            57999999999999999999999999964 543           2355554   4555544333333321      1111


Q ss_pred             cccccccceeeccccCCccccccc----------cc----c-cceEEEecCCCC--CCHHHHHHHHhCC------CeEec
Q 012750          322 ELLAHECDVLIPCALGGVLKRENA----------AD----V-KAKFIIEAANHP--TDPEADEILSKRG------VTILP  378 (457)
Q Consensus       322 ell~~~~DIliPaA~~~~It~~na----------~~----i-~akiIvEgAN~p--~t~~a~~iL~~rG------I~viP  378 (457)
                      +---.++||.+-|-....-. ++.          +.    + +.++||-=.--|  +|.+-.+.+.+..      |..-|
T Consensus        71 ~~a~~~adv~fIavgTP~~~-dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NP  149 (414)
T COG1004          71 EEAVKDADVVFIAVGTPPDE-DGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNP  149 (414)
T ss_pred             HHHHhcCCEEEEEcCCCCCC-CCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecCh
Confidence            11123778877775443322 221          11    2 336777777677  5677777777666      77788


Q ss_pred             ccccccCC
Q 012750          379 DIYANSGG  386 (457)
Q Consensus       379 D~laNaGG  386 (457)
                      .||--.-.
T Consensus       150 EFLREG~A  157 (414)
T COG1004         150 EFLREGSA  157 (414)
T ss_pred             HHhcCcch
Confidence            77765433

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=83.96  E-value=3.1  Score=41.79  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=26.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|++|+.++..|.+.|..|. +.|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~-~~~r   32 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVT-LWAR   32 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEE-EEEC
Confidence            479999999999999999999999875 5554

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=83.78  E-value=1.3  Score=45.53  Aligned_cols=36  Identities=28%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITG  286 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G  286 (457)
                      ++.++|+|+|.|+||+.+|..+...|. . +.+.|.+-
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~   40 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVK   40 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCC
Confidence            345789999999999999999988885 6 44778754

>TIGR03628 arch_S11P archaeal ribosomal protein S11P

Probab=83.68  E-value=5  Score=35.40  Aligned_cols=68  Identities=15%  Similarity=0.166  Sum_probs=54.0

Q ss_pred             CCCCCCcchHHHHHHHHHHHHH-HhCCCCCCCeEEEEe--------cChHHHHHHHHHHHCCCEEEEEECCCCeeeC
Q 012750          223 GSLGREAATGRGVVYATEALLA-EHGQAIRDLTFVIQG--------FGNVGSWAARLIHERGGKVIAVSDITGAVKN  290 (457)
Q Consensus       223 Gs~gr~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakVVaVsD~~G~iyn  290 (457)
                      |-.|+...|.|....+.+.+.+ .....++...|-|-|        .|.-...+.+-|.+.|.+|+-|-|.+..-+|
T Consensus        36 g~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpiPhN  112 (114)
T TIGR03628        36 VKADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD  112 (114)
T ss_pred             EeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence            3345778899999888888877 334557888899999        6777788889999999999999998765444

This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=83.49  E-value=12  Score=37.67  Aligned_cols=32  Identities=34%  Similarity=0.350  Sum_probs=28.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCE-EEEE
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGK-VIAV  281 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~Gak-VVaV  281 (457)
                      ..|.+|.|.|.|.||..+++++...|++ |+++
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~  194 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGV  194 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            3589999999999999999999999999 8854

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.45  E-value=1.7  Score=46.81  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +.+++|.|.|+|..|..++++|.++|++|+ ++|.+
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~   47 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVV-VADDN   47 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence            678899999999999999999999999776 78863

>PRK08628 short chain dehydrogenase; Provisional

Probab=83.21  E-value=1.9  Score=41.45  Aligned_cols=35  Identities=14%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750          247 GQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       247 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  281 (457)
                      +.+++|+++.|.| .|.+|+.+++.|.++|++|+.+
T Consensus         2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~   37 (258)
T PRK08628          2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIF   37 (258)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence            4578999999998 5899999999999999998854

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=83.15  E-value=1.6  Score=42.18  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=31.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+..+|+|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            788999999999999999999999998644477764

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=83.11  E-value=1.9  Score=36.48  Aligned_cols=102  Identities=24%  Similarity=0.372  Sum_probs=56.6

Q ss_pred             EEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc----ccccce
Q 012750          255 FVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHECDV  330 (457)
Q Consensus       255 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell----~~~~DI  330 (457)
                      |+|.|+|.+|+.+++.|.+.+.+|+. .|.          |.+...+..++.  +.-+. +.. +..+.|    -.++|.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvv-id~----------d~~~~~~~~~~~--~~~i~-gd~-~~~~~l~~a~i~~a~~   65 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVV-IDR----------DPERVEELREEG--VEVIY-GDA-TDPEVLERAGIEKADA   65 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEE-EES----------SHHHHHHHHHTT--SEEEE-S-T-TSHHHHHHTTGGCESE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEE-EEC----------CcHHHHHHHhcc--ccccc-ccc-hhhhHHhhcCccccCE
Confidence            68999999999999999997778884 444          234444444332  11010 111 112222    137787


Q ss_pred             eeccccCCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCCe
Q 012750          331 LIPCALGGVLK---RENAADV--KAKFIIEAANHPTDPEADEILSKRGVT  375 (457)
Q Consensus       331 liPaA~~~~It---~~na~~i--~akiIvEgAN~p~t~~a~~iL~~rGI~  375 (457)
                      ++=++-....|   ...+.++  ..++|+..    .+++..+.|.+-|+-
T Consensus        66 vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~----~~~~~~~~l~~~g~d  111 (116)
T PF02254_consen   66 VVILTDDDEENLLIALLARELNPDIRIIARV----NDPENAELLRQAGAD  111 (116)
T ss_dssp             EEEESSSHHHHHHHHHHHHHHTTTSEEEEEE----SSHHHHHHHHHTT-S
T ss_pred             EEEccCCHHHHHHHHHHHHHHCCCCeEEEEE----CCHHHHHHHHHCCcC
Confidence            77665433222   2233332  36787754    346667888888874

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.91  E-value=1.8  Score=46.70  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=32.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG  286 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  286 (457)
                      +++++|.|.|+|..|..+|++|.+.|++|. ++|.+.
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~~   40 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLR-VADTRE   40 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCCC
Confidence            568899999999999999999999999987 688753

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=82.83  E-value=2.2  Score=40.94  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++++++.|.|. |.+|+.+++.|.++|++|+ +.++
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r   42 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGR   42 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeC
Confidence            478999999984 9999999999999999988 4454

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=82.74  E-value=2.3  Score=36.10  Aligned_cols=69  Identities=26%  Similarity=0.340  Sum_probs=45.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECD  329 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~D  329 (457)
                      .||+|+|+|+.|+.....+.+.  +.++++|+|.+          .+...+..++.+ +..|     -+.+++++ .++|
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~----------~~~~~~~~~~~~-~~~~-----~~~~~ll~~~~~D   64 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD----------PERAEAFAEKYG-IPVY-----TDLEELLADEDVD   64 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS----------HHHHHHHHHHTT-SEEE-----SSHHHHHHHTTES
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC----------HHHHHHHHHHhc-ccch-----hHHHHHHHhhcCC
Confidence            3799999999999988766654  67999999874          344444433321 2122     13456675 4789


Q ss_pred             eeeccccC
Q 012750          330 VLIPCALG  337 (457)
Q Consensus       330 IliPaA~~  337 (457)
                      +++=|+..
T Consensus        65 ~V~I~tp~   72 (120)
T PF01408_consen   65 AVIIATPP   72 (120)
T ss_dssp             EEEEESSG
T ss_pred             EEEEecCC
Confidence            98888543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.72  E-value=1.9  Score=46.62  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=31.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +.|++|.|.|+|..|..++++|...|++|+ ++|.+
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D~~   44 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCDDD   44 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence            478899999999999999999999999988 58853

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=82.72  E-value=2.2  Score=40.63  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +++|+++.|.|. |.+|..+++.|.++|++|+.++
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~   36 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG   36 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence            478999999995 8999999999999999998654

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed

Probab=82.51  E-value=6  Score=35.79  Aligned_cols=68  Identities=15%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             CCCCCCcchHHHHHHHHHHHHH-HhCCCCCCCeEEEEe--------cChHHHHHHHHHHHCCCEEEEEECCCCeeeC
Q 012750          223 GSLGREAATGRGVVYATEALLA-EHGQAIRDLTFVIQG--------FGNVGSWAARLIHERGGKVIAVSDITGAVKN  290 (457)
Q Consensus       223 Gs~gr~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakVVaVsD~~G~iyn  290 (457)
                      |-.|+...|-|....+.+.+.+ .....++...|-|-|        .|.-...+.+.|...|.+|+-|-|.+..-+|
T Consensus        43 g~kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPhN  119 (132)
T PRK09607         43 VKADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD  119 (132)
T ss_pred             eeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence            3345678899988888888877 334567888899999        6777788889999999999999998765554

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=82.51  E-value=1.5  Score=41.89  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=31.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++..+|.|.|.|.+|..+++.|...|.+=+.+.|.+
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            678899999999999999999999998766577654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK06849 hypothetical protein; Provisional

Probab=82.45  E-value=1.8  Score=45.15  Aligned_cols=34  Identities=32%  Similarity=0.337  Sum_probs=28.7

Q ss_pred             CCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCC
Q 012750          251 RDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +.++|.|.|.+. +|..+++.|.+.|.+|+++ |+.
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~-d~~   37 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILA-DSL   37 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-eCC
Confidence            458999999875 8999999999999999955 553

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.44  E-value=2.1  Score=45.37  Aligned_cols=35  Identities=17%  Similarity=0.394  Sum_probs=31.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +.++++.|.|.|..|..+|++|.++|++|+ ++|.+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~~   37 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDAE   37 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            568899999999999999999999999988 67764

>PRK12828 short chain dehydrogenase; Provisional

Probab=82.41  E-value=2.2  Score=39.99  Aligned_cols=34  Identities=26%  Similarity=0.549  Sum_probs=29.7

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .++++++.|.| .|.+|+.+++.|.++|++|+.++
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~   38 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIG   38 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEe
Confidence            46789999998 59999999999999999988554

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=82.26  E-value=3.7  Score=41.66  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=26.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|.|.|++|..++..|.+.|..|. +.+.
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~r   31 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVN-LWGR   31 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence            369999999999999999999998886 4444

>PRK07060 short chain dehydrogenase; Provisional

Probab=82.14  E-value=2.5  Score=39.98  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=30.5

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .++++++++|.|. |.+|+.+++.|.++|++|+.++
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~   40 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA   40 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence            3578899999996 8999999999999999988543

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=82.08  E-value=1.5  Score=44.98  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=28.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -++|+|+|.|.+|+..|..++..|+.|+ +.|.+
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~-l~D~~   35 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVV-LKDIS   35 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceE-EEeCC
Confidence            3689999999999999999988779988 77775

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.06  E-value=2.1  Score=45.62  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=31.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++++|.|.|+|.-|..+|++|.++|++|. ++|..
T Consensus         7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~-~~D~~   41 (460)
T PRK01390          7 FAGKTVAVFGLGGSGLATARALVAGGAEVI-AWDDN   41 (460)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EECCC
Confidence            678899999999999999999999999976 78864

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=82.03  E-value=11  Score=38.69  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCC-CCeec-CCCcccccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD-GGDSM-EPSELLAHE  327 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~-~~~~i-~~~ell~~~  327 (457)
                      .-.++.|+|.|+.|++-++.|.. ...+-|.|.|.+          .+...++.++-.   .+. ..... ++++.+ .+
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~----------~~~~~~~~~~~~---~~g~~v~~~~~~~eav-~~  192 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT----------PSTREKFALRAS---DYEVPVRAATDPREAV-EG  192 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC----------HHHHHHHHHHHH---hhCCcEEEeCCHHHHh-cc
Confidence            45789999999999987776654 234444466653          344433333211   111 11112 334445 49


Q ss_pred             cceeeccccCC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 012750          328 CDVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIY  381 (457)
Q Consensus       328 ~DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~l  381 (457)
                      |||++=|....  .+..+.. +-.+-+.+=|++.|-..|.+..+-++. .++.|..
T Consensus       193 aDiVitaT~s~~P~~~~~~l-~~g~~v~~vGs~~p~~~Eld~~~l~~a-~v~vD~~  246 (325)
T TIGR02371       193 CDILVTTTPSRKPVVKADWV-SEGTHINAIGADAPGKQELDPEILKNA-KIFVDDL  246 (325)
T ss_pred             CCEEEEecCCCCcEecHHHc-CCCCEEEecCCCCcccccCCHHHHhcC-cEEECCH
Confidence            99999887432  2333322 336678888999886666665444444 3445643

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=82.02  E-value=1.7  Score=41.42  Aligned_cols=36  Identities=25%  Similarity=0.335  Sum_probs=31.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++..+|.|+|.|.+|..+++.|...|.+=+.+.|.+
T Consensus        17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            677899999999999999999999998766577764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=81.90  E-value=2.4  Score=40.11  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=30.1

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +++++++|.| .|.+|+++++.|.++|++|+.++.
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r   38 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI   38 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence            6788999998 699999999999999999986643

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=81.82  E-value=2.6  Score=42.96  Aligned_cols=37  Identities=32%  Similarity=0.582  Sum_probs=32.6

Q ss_pred             CCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          247 GQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       247 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      |.+.++++|.|.| .|-+|+++++.|.++|++|+++.+
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r   42 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR   42 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            5568899999999 599999999999999999997654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=81.75  E-value=3.3  Score=43.65  Aligned_cols=120  Identities=21%  Similarity=0.265  Sum_probs=65.0

Q ss_pred             HHHHHHhCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec
Q 012750          240 EALLAEHGQ-AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM  318 (457)
Q Consensus       240 ~~~l~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i  318 (457)
                      +.+.+.++. .+..++++|.|+|.+|+.+++.|.+.|..|+ +.|.          |.+.+.++.++...+.-+. +...
T Consensus       218 ~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~----------~~~~~~~~~~~~~~~~~i~-gd~~  285 (453)
T PRK09496        218 RAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIER----------DPERAEELAEELPNTLVLH-GDGT  285 (453)
T ss_pred             HHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC----------CHHHHHHHHHHCCCCeEEE-CCCC
Confidence            333333333 3667899999999999999999999999998 4454          2344444443321110000 1111


Q ss_pred             CCCccc---ccccceeeccccCCc---cccccccccc-ceEEEecCCCCCCHHHHHHHHhCCCe
Q 012750          319 EPSELL---AHECDVLIPCALGGV---LKRENAADVK-AKFIIEAANHPTDPEADEILSKRGVT  375 (457)
Q Consensus       319 ~~~ell---~~~~DIliPaA~~~~---It~~na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~  375 (457)
                      +.+.+.   -.++|.++-+.-...   +....+..+. .++|+...    +++..++|+..|+-
T Consensus       286 ~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~  345 (453)
T PRK09496        286 DQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGID  345 (453)
T ss_pred             CHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCC
Confidence            121121   237788875543221   1111223332 36777543    34456778888873

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=81.71  E-value=3.8  Score=39.51  Aligned_cols=91  Identities=12%  Similarity=0.168  Sum_probs=52.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCC---E-EEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGG---K-VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~Ga---k-VVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++|.|+|.|++|+.++..|.+.|.   + |+ +.+.+         +.+.+.+..++.+       .... +.++++ 
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~-~~~~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~-   64 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEII-VSNRS---------NVEKLDQLQARYN-------VSTTTDWKQHV-   64 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEE-EECCC---------CHHHHHHHHHHcC-------cEEeCChHHHH-
Confidence            46789999999999999998887762   2 43 33321         1334444333221       1111 233444 


Q ss_pred             cccceeeccccCCccccccccc----ccceEEEecCCCC
Q 012750          326 HECDVLIPCALGGVLKRENAAD----VKAKFIIEAANHP  360 (457)
Q Consensus       326 ~~~DIliPaA~~~~It~~na~~----i~akiIvEgAN~p  360 (457)
                      .++|+++-|.....+ .+-+.+    ++-++|+--+.+-
T Consensus        65 ~~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi  102 (245)
T PRK07634         65 TSVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGI  102 (245)
T ss_pred             hcCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCC
Confidence            379999988765433 222222    3346777777653

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=81.48  E-value=2.3  Score=40.85  Aligned_cols=97  Identities=18%  Similarity=0.197  Sum_probs=54.6

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC-Ccc--cCCC-CeecCCCcccccc
Q 012750          253 LTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG-SLK--DFDG-GDSMEPSELLAHE  327 (457)
Q Consensus       253 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g-~~~--~~~~-~~~i~~~ell~~~  327 (457)
                      ++|.|+| .|++|+.+++.|.+.|.+|+ +.+.+          .+.+.+..+... .+.  ++.. ....+..+.+ .+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~----------~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~-~~   68 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSRD----------LEKAEEAAAKALEELGHGGSDIKVTGADNAEAA-KR   68 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcC----------HHHHHHHHHHHHhhccccCCCceEEEeChHHHH-hc
Confidence            4799997 89999999999999999887 44542          222222222110 000  1110 0111222333 37


Q ss_pred             cceeeccccCCcccc---cccccccceEEEecCCCCC
Q 012750          328 CDVLIPCALGGVLKR---ENAADVKAKFIIEAANHPT  361 (457)
Q Consensus       328 ~DIliPaA~~~~It~---~na~~i~akiIvEgAN~p~  361 (457)
                      +|++|-|.....+.+   +-.+.++.++|+..+|+..
T Consensus        69 aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~  105 (219)
T TIGR01915        69 ADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPLA  105 (219)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence            899988865443321   1112344589999999753

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06138 short chain dehydrogenase; Provisional

Probab=81.37  E-value=2.6  Score=40.11  Aligned_cols=34  Identities=18%  Similarity=0.414  Sum_probs=29.9

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +++++++.|.|. |.+|+.+++.|.++|++|+.++
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~   36 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD   36 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence            468899999985 9999999999999999998654

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.10  E-value=2.9  Score=39.66  Aligned_cols=34  Identities=18%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +++++++.|.| .|.+|+.+++.|.++|++|+.++
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~   36 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTD   36 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            46788999998 59999999999999999988553

>cd08230 glucose_DH Glucose dehydrogenase

Probab=80.96  E-value=4.4  Score=41.25  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=29.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      ..|.+|+|+|.|.||..++.++...|++|+++.
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~  203 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN  203 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence            478899999999999999999999999988654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02206 UDP-glucuronate decarboxylase

Probab=80.79  E-value=2.5  Score=45.28  Aligned_cols=37  Identities=35%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             hCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          246 HGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       246 ~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +|..-++++|.|.| .|-||+++++.|.++|.+|+++.
T Consensus       113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld  150 (442)
T PLN02206        113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD  150 (442)
T ss_pred             cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence            35566789999999 59999999999999999999764

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=80.78  E-value=1.6  Score=36.60  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=28.9

Q ss_pred             CCCeEEEEecChHHHHHHH-HHHHCCCEEEEEECCCC
Q 012750          251 RDLTFVIQGFGNVGSWAAR-LIHERGGKVIAVSDITG  286 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~-~L~~~GakVVaVsD~~G  286 (457)
                      +..+++|+|.|+.|+.++. .+...|.+++++.|.+.
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~   38 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP   38 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence            3468999999999998874 34567999999999853

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.69  E-value=2.5  Score=44.56  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=29.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +.++|.|.|+|..|..+|++|.++|++|+ ++|.+
T Consensus         2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~~   35 (418)
T PRK00683          2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDKS   35 (418)
T ss_pred             CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            45689999999999999999999999877 57754

>PRK06841 short chain dehydrogenase; Provisional

Probab=80.58  E-value=3  Score=39.87  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +++++++.|.| .|.+|+++++.|.++|++|+.++
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~   46 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD   46 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            57899999998 59999999999999999998543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=80.49  E-value=2.5  Score=42.36  Aligned_cols=31  Identities=29%  Similarity=0.293  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|++|..+|..|...|..|+ +.|.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d~   35 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLDS   35 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEE-EEeC
Confidence            579999999999999999999999887 5565

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=80.48  E-value=2.4  Score=42.41  Aligned_cols=31  Identities=23%  Similarity=0.334  Sum_probs=27.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|.+|+.+|..|...|..|+ +.|.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d~   34 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVDV   34 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEE-EEeC
Confidence            479999999999999999999999987 5565

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=80.43  E-value=61  Score=34.94  Aligned_cols=171  Identities=16%  Similarity=0.180  Sum_probs=96.8

Q ss_pred             CCCcceE-EeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccC-----CCCCCCHHHHHHHHHHhhhhhC---CCC---
Q 012750          144 YGGAKGG-IGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPA-----PDMGTNAQTMAWILDEYSKFHG---HSP---  211 (457)
Q Consensus       144 ~GGaKGg-I~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipa-----pDvgT~~~~m~wi~d~~~~~~g---~~~---  211 (457)
                      +-|-.-+ +.+.|...+.       -+|-.++..+.|....+..     -..|=+-+|-+.+...|..+-.   ...   
T Consensus       124 L~GK~v~~lF~epSTRTR-------~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~~  196 (429)
T PRK11891        124 LEGAVLGNLFFEASTRTR-------VSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGSV  196 (429)
T ss_pred             cCCcEEEEEeccCCchhH-------HHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhHH
Confidence            5443333 3457765432       2688888888776544422     2344556788888888754321   111   


Q ss_pred             ---ceecCcccCCCCC-CCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEec---ChHHHHHHHHHHHC-CCEEEEEEC
Q 012750          212 ---AVVTGKPIDLGGS-LGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGF---GNVGSWAARLIHER-GGKVIAVSD  283 (457)
Q Consensus       212 ---~~~tGkp~~~GGs-~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf---GnVG~~~a~~L~~~-GakVVaVsD  283 (457)
                         +-....|+..+|+ .+.-+.-+..=++++++.+...|..++|++|+++|-   +||...++..+... |++|+- + 
T Consensus       197 ~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l-~-  274 (429)
T PRK11891        197 AEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTL-V-  274 (429)
T ss_pred             HHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEE-E-
Confidence               1235788888875 333344444444555543211233589999999997   59999999988775 999873 2 


Q ss_pred             CCCeeeCCCCCC-HHHHHHhHhhcC-CcccCCCCeecCCCcccccccceeeccc
Q 012750          284 ITGAVKNADGID-IHKLLAHKDKTG-SLKDFDGGDSMEPSELLAHECDVLIPCA  335 (457)
Q Consensus       284 ~~G~iynp~GLD-i~~L~~~~~~~g-~~~~~~~~~~i~~~ell~~~~DIliPaA  335 (457)
                            .|.|++ .+.+.+..++.| ++.-+.     +.++.+. ++||++.-.
T Consensus       275 ------~P~~~~~~~~~~~~~~~~G~~v~~~~-----d~~eav~-~ADVVYt~~  316 (429)
T PRK11891        275 ------SPPTLEMPAYIVEQISRNGHVIEQTD-----DLAAGLR-GADVVYATR  316 (429)
T ss_pred             ------CCCccccCHHHHHHHHhcCCeEEEEc-----CHHHHhC-CCCEEEEcC
Confidence                  455653 234444333322 221111     2233343 889999854

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=80.40  E-value=2.5  Score=41.95  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=26.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      ++|+|+|.|++|+.+|..|.+.|..|+.+.
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~   30 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVA   30 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            479999999999999999999999987443

>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit

Probab=80.39  E-value=28  Score=37.20  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      ..++|+||+|.|-......++++|.+.|.+++.+.
T Consensus       299 ~~l~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~  333 (435)
T cd01974         299 QYLHGKKFALYGDPDFLIGLTSFLLELGMEPVHVL  333 (435)
T ss_pred             HhcCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEE
Confidence            45799999999988888899999999999998765

The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.

>PRK07774 short chain dehydrogenase; Provisional

Probab=80.09  E-value=3.2  Score=39.47  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=29.3

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  281 (457)
                      +++++++.|.|. |-+|.++++.|.++|++|+.+
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~   36 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVA   36 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            367899999985 999999999999999999854

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.05  E-value=2.3  Score=42.48  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|.+|+.+|..|.+.|.+|+ +.|.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~   32 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDI   32 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEE-EEeC
Confidence            479999999999999999999999988 5555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	457
1b3b_A	415	Thermotoga Maritima Glutamate Dehydrogenase Mutant		1e-109
1b26_A	416	Glutamate Dehydrogenase Length = 416		1e-108
2tmg_A	415	Thermotoga Maritima Glutamate Dehydrogenase Mutant		1e-102
1bvu_A	418	Glutamate Dehydrogenase From Thermococcus Litoralis		1e-102
3k92_A	424	Crystal Structure Of A E93k Mutant Of The Majour Ba		1e-101
1gtm_A	419	Structure Of Glutamate Dehydrogenase Length = 419		3e-99
1euz_A	419	Glutamate Dehydrogenase From Thermococcus Profundus		2e-98
3k8z_A	423	Crystal Structure Of Gudb1 A Decryptified Secondary		2e-95
3aoe_A	424	Crystal Structure Of Hetero-Hexameric Glutamate Deh		2e-90
3aog_A	440	Crystal Structure Of Glutamate Dehydrogenase (Gdhb)		2e-90
2yfq_A	421	Crystal Structure Of Glutamate Dehydrogenase From P		4e-84
1v9l_A	421	L-Glutamate Dehydrogenase From Pyrobaculum Islandic		7e-84
1nqt_A	496	Crystal Structure Of Bovine Glutamate Dehydrogenase		7e-76
1l1f_A	505	Structure Of Human Glutamate Dehydrogenase-Apo Form		1e-75
1nr1_A	496	Crystal Structure Of The R463a Mutant Of Human Glut		1e-75
3mw9_A	501	Bovine Glutamate Dehydrogenase Complexed With Nadh,		2e-74
3etd_A	501	Structure Of Glutamate Dehydrogenase Complexed With		2e-74
3aoe_E	419	Crystal Structure Of Hetero-Hexameric Glutamate Deh		2e-71
1hwy_A	501	Bovine Glutamate Dehydrogenase Complexed With Nad A		8e-71
2yfh_A	448	Structure Of A Chimeric Glutamate Dehydrogenase Len		9e-48
3sbo_A	447	Structure Of E.Coli Gdh From Native Source Length =		8e-47
4fcc_A	450	Glutamate Dehydrogenase From E. Coli Length = 450		1e-46
2yfg_E	447	Structural Determinants Of Cofactor Specificity And		1e-46
1hrd_A	449	Glutamate Dehydrogenase Length = 449		5e-45
1k89_A	449	K89l Mutant Of Glutamate Dehydrogenase Length = 449		3e-44
1aup_A	449	Glutamate Dehydrogenase Length = 449		2e-43
3r3j_A	456	Kinetic And Structural Characterization Of Plasmodi		3e-43
2bma_A	470	The Crystal Structure Of Plasmodium Falciparum Glut		5e-33
1c1d_B	355	L-Phenylalanine Dehydrogenase Structure In Ternary		9e-21
1c1x_B	355	L-Phenylalanine Dehydrogenase Structure In Ternary		9e-21
1bxg_A	356	Phenylalanine Dehydrogenase Structure In Ternary Co		9e-21
1bxg_B	356	Phenylalanine Dehydrogenase Structure In Ternary Co		9e-21
1bw9_B	356	Phenylalanine Dehydrogenase Structure In Ternary Co		1e-20
1c1x_A	355	L-Phenylalanine Dehydrogenase Structure In Ternary		1e-20
1bw9_A	356	Phenylalanine Dehydrogenase Structure In Ternary Co		1e-20
1c1d_A	355	L-Phenylalanine Dehydrogenase Structure In Ternary		1e-20
3vpx_A	364	Crystal Structure Of Leucine Dehydrogenase From A P		3e-18
1leh_A	364	Leucine Dehydrogenase From Bacillus Sphaericus Leng		1e-17

>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d, G376k Length = 415

Iteration: 1
 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/401 (48%), Positives = 268/401 (66%), Gaps = 2/401 (0%)
Query: 56  NFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGI 115
            F  AA ++ L+S L   L  P R + VE  +  DDG +  + G+RVQH+ ARGP KGGI
Sbjct: 12  QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 116 RYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIH 175
           RYHP+V  DEV ALA  MTWKTAV D+P+GG KGG+   PK+LS +ELERL+R F  +I 
Sbjct: 72  RYHPDVTLDEVKALAFWMTWKTAVMDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 131
Query: 176 DLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRG 234
            +IG + DIPAPD+ TNA  +AW +D YS   GH+   +VTGKP++LGGS GRE ATGRG
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRG 191
Query: 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIAVSDITGAVKNADG 293
           V       +   G   +  T  +QGFGNVG +AA LI  E G KV+AVSD  G + N +G
Sbjct: 192 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 251
Query: 294 IDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFI 353
            D+ +L+ +K + G++  +  G+ +   ELL  + D+L+P AL G +   NA  +KAK +
Sbjct: 252 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV 311
Query: 354 IEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELR 413
           +E AN PT PEADEILS+RG+ ++PDI AN+GGVTVSYFEWVQ++Q F W+ D+V N L 
Sbjct: 312 VEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALE 371
Query: 414 RYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
           + M +AF+++  + + +N ++R  A+ L ++RVA AT  RG
Sbjct: 372 KMMKKAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 412

>pdb|1B26|A Chain A, Glutamate Dehydrogenase Length = 416

Iteration: 1
 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/401 (48%), Positives = 267/401 (66%), Gaps = 2/401 (0%)
Query: 56  NFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGI 115
            F  AA ++ L+S L   L  P R + VE  +  DDG +  + G+RVQH+ ARGP KGGI
Sbjct: 13  QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 72
Query: 116 RYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIH 175
           RYHP+V  DEV ALA  MTWKTAV ++P+GG KGG+   PK+LS +ELERL+R F  +I 
Sbjct: 73  RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 132
Query: 176 DLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRG 234
            +IG + DIPAPD+ TNA  +AW +D YS   GH+   +VTGKP++LGGS GRE ATGRG
Sbjct: 133 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRG 192
Query: 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIAVSDITGAVKNADG 293
           V       +   G   +  T  +QGFGNVG +AA LI  E G KV+AVSD  G + N +G
Sbjct: 193 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 252
Query: 294 IDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFI 353
            D+ +L+ +K + G++  +  G+ +   ELL  + D+L+P AL G +   NA  +KAK +
Sbjct: 253 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV 312
Query: 354 IEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELR 413
           +E AN PT PEADEILS+RG+ ++PDI AN+GGVTVSYFEWVQ++Q F W+ D+V N L 
Sbjct: 313 VEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALE 372
Query: 414 RYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
           + M  AF+++  + + +N ++R  A+ L ++RVA AT  RG
Sbjct: 373 KMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 413

>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r, T158e, N117r, S160e Length = 415

Iteration: 1
 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/401 (48%), Positives = 267/401 (66%), Gaps = 2/401 (0%)
Query: 56  NFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGI 115
            F  AA ++ L+S L   L  P R + VE  +  DDG +  + G+RVQH+ ARGP KGGI
Sbjct: 12  QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 116 RYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIH 175
           RYHP+V  DEV ALA  MTWKTAV ++P+GG KGG+   PK+LS  ELERL+R F ++I 
Sbjct: 72  RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREIQ 131
Query: 176 DLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRG 234
            +IG + DIPAPD+ TNA  +AW +DEY    GH+   +VTGKP++LGGS GRE ATGRG
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRG 191
Query: 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIAVSDITGAVKNADG 293
           V       +   G   +  T  +QGFGNVG +AA LI  E G KV+AVSD  G + N +G
Sbjct: 192 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 251
Query: 294 IDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFI 353
            D+ +L+ +K + G++  +  G+ +   ELL  + D+L+P AL G +   NA  +KAK +
Sbjct: 252 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV 311
Query: 354 IEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELR 413
           +E AN PT PEADEILS+RG+ ++PDI AN+GGVTVSYFEWVQ++Q F W+ D+V N L 
Sbjct: 312 VEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALE 371
Query: 414 RYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
           + M  AF+++  + + +N ++R  A+ L ++RVA AT  RG
Sbjct: 372 KMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 412

>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis Length = 418

Iteration: 1
 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/405 (45%), Positives = 256/405 (63%), Gaps = 4/405 (0%)
Query: 55  RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGG 114
           +    AA+ + +  +    L  P R ++V   +  DDGS+  + GFRVQ++ ARGP KGG
Sbjct: 11  KQLERAAQYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGG 70
Query: 115 IRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI 174
           IR+HPE     V ALA  MTWKTAV D+PYGG KGG+ C+PKE+S+ E ERL R + + I
Sbjct: 71  IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAI 130
Query: 175 HDLIGIHTDIPAPDMGTNAQTMAWILDEY---SKFHGHSPAVVTGKPIDLGGSLGREAAT 231
           +D+I  +TDIPAPD+ TN Q MAW++DEY   S+    S  V+TGKP  +GG + R  AT
Sbjct: 131 YDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKPPSVGGIVARMDAT 190
Query: 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKN 290
            RG  Y         G  ++  T  IQG+GN G + A+++ E  G KV+AVSD  G + N
Sbjct: 191 ARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYN 250
Query: 291 ADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA 350
            DG++  ++LA K KTGS+KDF G  ++   ELL  E DVL P A+  V+ ++NA ++KA
Sbjct: 251 PDGLNADEVLAWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVITKKNADNIKA 310
Query: 351 KFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNN 410
           K + E AN PT PEADEIL ++G+ I+PD   N+GGVTVSYFEWVQNI G  W  ++   
Sbjct: 311 KIVAELANGPTTPEADEILYEKGILIIPDFLCNAGGVTVSYFEWVQNITGDYWTVEETRA 370
Query: 411 ELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           +L + M +AF ++    +  N N+R  A+ + V+RV +A   RGW
Sbjct: 371 KLDKKMTKAFWDVYNTHKEKNINMRDAAYVVAVSRVYQAMKDRGW 415

>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus Su Glutamate Dehydrogenase Rocg Length = 424

Iteration: 1
 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/410 (42%), Positives = 260/410 (63%), Gaps = 2/410 (0%)
Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           +N   +T    + A R LG    +   +  P R + V   +  D+GS+  + G+R QH++
Sbjct: 15  LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND 74
Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           A GP KGG+R+HPEV+ ++V AL+  MT K  +A++PYGG KGGI C P+ +S  ELERL
Sbjct: 75  AVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERL 134
Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSL 225
           +R + + I  ++G   DIPAPD+ TN+Q MAW++DEYS+     SP  +TGKP+ LGGS 
Sbjct: 135 SRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQ 194
Query: 226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285
           GRE AT +GV    E  + + G  +++   +IQGFGN GS+ A+ +H+ G KVI +SD  
Sbjct: 195 GRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN 254
Query: 286 GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
           G + N DG+DI  LL  +D  G + +    D +   ELL  +CD+L+P A+   +  +NA
Sbjct: 255 GGLYNPDGLDIPYLLDKRDSFGMVTNL-FTDVITNEELLEKDCDILVPAAISNQITAKNA 313
Query: 346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
            +++A  ++E AN PT  +A +IL++RGV ++PDI A++GGVTVSYFEWVQN QG+ W E
Sbjct: 314 HNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQNNQGYYWSE 373
Query: 406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           ++V  +LR  M+ +F  I     TH  ++R+ A+  G+ + A A+  RGW
Sbjct: 374 EEVAEKLRSVMVSSFETIYQTAATHKVDMRLAAYMTGIRKSAEASRFRGW 423

>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase Length = 419

Iteration: 1
 Score =  358 bits (919), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/406 (45%), Positives = 256/406 (63%), Gaps = 5/406 (1%)
Query: 55  RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGG 114
           +    AA+ + +  +    L  P R ++V   +  DDGS+  + GFRVQH+ ARGP KGG
Sbjct: 11  KQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGG 70
Query: 115 IRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI 174
           IR+HPE     V ALA  MTWKTAV D+PYGG KGGI   PK+LS+ E ERL R + + I
Sbjct: 71  IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAI 130
Query: 175 HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGREAAT 231
           +D+I  + DIPAPD+ TN Q MAW++DEY       +PA  ++TGKP+ +GGSLGR  AT
Sbjct: 131 YDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEAT 190
Query: 232 GRGVVYAT-EALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVK 289
            RG  Y   EA        ++  T  IQG+GN G + A+++ E  G KV+AVSD  G + 
Sbjct: 191 ARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIY 250
Query: 290 NADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVK 349
           N DG++  ++L  K++ GS+KDF G  ++   ELL  E DVL P A+  V+ ++NA ++K
Sbjct: 251 NPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIK 310
Query: 350 AKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVN 409
           AK + E AN P  PEADEIL ++G+  +PD   N+GGVTVSYFEWVQNI G+ W  ++V 
Sbjct: 311 AKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVR 370
Query: 410 NELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
             L + M +AF+++  + +  N ++R  A+ + V RV +A   RGW
Sbjct: 371 ERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 416

>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The Unligated State Length = 419

Iteration: 1
 Score =  356 bits (913), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/416 (42%), Positives = 254/416 (61%), Gaps = 4/416 (0%)
Query: 44  IIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQ 103
           ++ ++      +    AA+ + +  +    L  P R ++V   I  DDGS+  + GFRVQ
Sbjct: 1   MVEIDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQ 60
Query: 104 HDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSEL 163
           H+ ARGP KGGIR+HP      V ALA  MTWK AV D+PYGG KGGI  +PKELS  E 
Sbjct: 61  HNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQ 120
Query: 164 ERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS---KFHGHSPAVVTGKPID 220
           ERL R + + ++D+IG  TDIPAPD+ TN + M W++DEY    +  G +  V+TGKP+ 
Sbjct: 121 ERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLS 180
Query: 221 LGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER-GGKVI 279
           +GGSLGR  AT +G ++         G  ++     +QG+GN G + A+L  E+ G  V+
Sbjct: 181 IGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVV 240
Query: 280 AVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGV 339
           AVSD  G + N DG+D  ++L  K + GS+KDF G  ++   ELL  E DVL P A+  V
Sbjct: 241 AVSDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEV 300
Query: 340 LKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQ 399
           +  +NA ++KAK + E AN P  PEAD+IL ++G+  +PD   N+GGVTVSYFEWVQNI 
Sbjct: 301 ITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNIN 360
Query: 400 GFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           G+ W E++V  +L + M +AF  +    +  N ++R  A+ + V+RV +A   RGW
Sbjct: 361 GYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRGW 416

>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary Glutamate Dehydrogenase From B. Subtilis Length = 423

Iteration: 1
 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/411 (42%), Positives = 264/411 (64%), Gaps = 5/411 (1%)
Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           ++ L +T      A   LG   ++   L  P R + V+  +  DDGS+  + G+R  H++
Sbjct: 15  LDVLKSTQTVIHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYRA-HND 73
Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           + GP KGGIR+HP V   EV AL+  M+ K  + D+PYGG KGGI C P+++S  ELERL
Sbjct: 74  SVGPTKGGIRFHPNVTEKEVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERL 133
Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSL 225
           +R + + I  ++G   D+PAPD+ TN+Q MAW++DEYS+    +SP  +TGKP+ LGGS 
Sbjct: 134 SRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSH 193
Query: 226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285
           GRE+AT +GV    +    + G  I+    V+QGFGN GS+ A+ +H+ G KV+ +SD  
Sbjct: 194 GRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAY 253
Query: 286 GAVKNADGIDIHKLLAHKDKTGSL-KDFDGGDSMEPSELLAHECDVLIPCALGGVLKREN 344
           G + + +G+DI  LL  +D  G++ K F+  D++   ELL  +CD+L+P A+   +  EN
Sbjct: 254 GGLYDPEGLDIDYLLDRRDSFGTVTKLFN--DTITNQELLELDCDILVPAAIENQITEEN 311
Query: 345 AADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWE 404
           A +++AK ++EAAN PT  E  +ILS R + ++PD+ A++GGVTVSYFEWVQN QGF W 
Sbjct: 312 AHNIRAKIVVEAANGPTTLEGTKILSDRDILLVPDVLASAGGVTVSYFEWVQNNQGFYWS 371
Query: 405 EDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           E++V  +L + M+++F+NI  M      ++R+ A+ +GV ++A A+  RGW
Sbjct: 372 EEEVEEKLEKMMVKSFNNIYEMANNRRIDMRLAAYMVGVRKMAEASRFRGW 422

>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 424

Iteration: 1
 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/392 (45%), Positives = 237/392 (60%), Gaps = 1/392 (0%)
Query: 64  LGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDP 123
           LG  + L  SL  P R + V+  +  DDGS+  + G+RV H+ ARGP KGG+RYHPEV  
Sbjct: 30  LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 89
Query: 124 DEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTD 183
            EV ALA  MT K A   +PYGG KGGI   P++LS  ELERLTR +T +I  L+G   D
Sbjct: 90  SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 149
Query: 184 IPAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGRGVVYATEAL 242
           IPAPD+ T  + MAW++D YS   G + P VVTGKPI LGGSLGR  ATGRGV     A 
Sbjct: 150 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAA 209
Query: 243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH 302
             + G  +      IQGFGNVG+ AAR  H+ G +V+AV D TG V N  GID + LL H
Sbjct: 210 AEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRH 269
Query: 303 KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTD 362
             + G ++ +   + +  ++      + L+P AL   +  +NA  ++A+ + E AN PT 
Sbjct: 270 VQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTT 329
Query: 363 PEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHN 422
           P AD+IL ++GV ++PD+ AN+GGVTVSYFEWVQ+   + W E+++N  L R +  AF  
Sbjct: 330 PAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEA 389
Query: 423 IKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
           +  + Q     LR  A+ +   RV  A  LRG
Sbjct: 390 VWQVAQEKKIPLRTAAYVVAATRVLEARALRG 421

>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From Thermus Thermophilus (Glu Bound Form) Length = 440

Iteration: 1
 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/392 (45%), Positives = 237/392 (60%), Gaps = 1/392 (0%)
Query: 64  LGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDP 123
           LG  + L  SL  P R + V+  +  DDGS+  + G+RV H+ ARGP KGG+RYHPEV  
Sbjct: 46  LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 105
Query: 124 DEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTD 183
            EV ALA  MT K A   +PYGG KGGI   P++LS  ELERLTR +T +I  L+G   D
Sbjct: 106 SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 165
Query: 184 IPAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGRGVVYATEAL 242
           IPAPD+ T  + MAW++D YS   G + P VVTGKPI LGGSLGR  ATGRGV     A 
Sbjct: 166 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAA 225
Query: 243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH 302
             + G  +      IQGFGNVG+ AAR  H+ G +V+AV D TG V N  GID + LL H
Sbjct: 226 AEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRH 285
Query: 303 KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTD 362
             + G ++ +   + +  ++      + L+P AL   +  +NA  ++A+ + E AN PT 
Sbjct: 286 VQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTT 345
Query: 363 PEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHN 422
           P AD+IL ++GV ++PD+ AN+GGVTVSYFEWVQ+   + W E+++N  L R +  AF  
Sbjct: 346 PAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEA 405
Query: 423 IKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
           +  + Q     LR  A+ +   RV  A  LRG
Sbjct: 406 VWQVAQEKKIPLRTAAYVVAATRVLEARALRG 437

>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From Peptoniphilus Asaccharolyticus Length = 421

Iteration: 1
 Score =  308 bits (789), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 164/416 (39%), Positives = 234/416 (56%), Gaps = 7/416 (1%)
Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           +N L A     R A   LG D  +   L  P R I++   +  DDG++  + G+R  H +
Sbjct: 5   LNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSS 64
Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           A GP KGG+R+HP V+ DEV AL+  MT+K     +PYGG KGGI   P ELS  ELE+L
Sbjct: 65  AVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQL 124
Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAV--VTGKPIDLGGS 224
           +R + + ++  +G   DIPAPD+ TN Q M+W +DEY K +G    +   TGKP+  GGS
Sbjct: 125 SRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGS 184
Query: 225 LGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284
            GR  ATG GV           G  + D    +QGFGNVG++  + I  +GGKV A+++ 
Sbjct: 185 EGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEW 244
Query: 285 -----TGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGV 339
                  A+ N +GID  +LLA+K+   +L  F G + +   E    E D+++P AL  V
Sbjct: 245 DRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENV 304
Query: 340 LKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQ 399
           +  E A  + AK + EAAN PT PE D++L++RG+ + PDI  NSGGV VSY+EWVQN  
Sbjct: 305 ITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQNQY 364
Query: 400 GFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           G+ W E +V  +    M++A   +  +   +N  LR   +   +  +  A  LRGW
Sbjct: 365 GYYWTEAEVEEKQEADMMKAIKGVFAVADEYNVTLREAVYMYAIKSIDVAMKLRGW 420

>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum Complexed With Nad Length = 421

Iteration: 1
 Score =  307 bits (787), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 164/399 (41%), Positives = 231/399 (57%), Gaps = 8/399 (2%)
Query: 65  GLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPD 124
           G      + L  P R + V   +  D G    + G+RVQH +  GP KGG+R+HPEV   
Sbjct: 22  GFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLA 81
Query: 125 EVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDI 184
           +  ALA LMT K ++A +PYGGAKG +   PK+LS  ELE L+R + + I  LIG   DI
Sbjct: 82  DDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDI 141
Query: 185 PAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGRGVVYATEALL 243
           PAPD+GTNAQ MAW++DEYSK  G++ P V T KP +L G+  RE ATG GV  AT  + 
Sbjct: 142 PAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAVATREMA 201
Query: 244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHK 303
            +    I   T  IQG GNVG W A  + + G KVIAVSDI G     +G+++  +  +K
Sbjct: 202 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNK 261
Query: 304 DKTGS--LKDFDGGDSME----PSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAA 357
             TG   ++ F   D+ E    P  +   + D+ +P A+  V++ +NA  VKA+ ++E A
Sbjct: 262 GLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGA 321
Query: 358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMI 417
           N PT PEA+ IL +RGV ++PDI AN+GGV +SY EWV+N+Q ++W+E++    L   M+
Sbjct: 322 NGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMV 381
Query: 418 RAFHNIKGMCQTHN-CNLRMGAFTLGVNRVARATTLRGW 455
                +    Q      +R  A    + R+  A  +RGW
Sbjct: 382 NNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW 420

>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp Complex Length = 496

Iteration: 1
 Score =  281 bits (718), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 153/327 (46%), Positives = 200/327 (61%), Gaps = 15/327 (4%)
Query: 87  IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
           I +DDGS     G+R QH + R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GG
Sbjct: 60  IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
           AK G+  +PK  +++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
              GH    + A VTGKPI  GG  GR +ATGRGV +  E  + E              D
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
            TFV+QGFGNVG  + R +H  G K IAV +  G++ N DGID  +L   K + GS+  F
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 299
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
                 E S +L  +CD+LIP A    L + NA  VKAK I E AN PT PEAD+I  +R
Sbjct: 300 PKAKPYEGS-ILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 358
Query: 373 GVTILPDIYANSGGVTVSYFEWVQNIQ 399
            + ++PD+Y N+GGVTVSYFEW++N+ 
Sbjct: 359 NIMVIPDLYLNAGGVTVSYFEWLKNLN 385

>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form Length = 505

Iteration: 1
 Score =  280 bits (716), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/327 (46%), Positives = 199/327 (60%), Gaps = 15/327 (4%)
Query: 87  IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
           I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GG
Sbjct: 69  IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 128
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
           AK G+  +PK  +++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+
Sbjct: 129 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 188
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
              GH    + A VTGKPI  GG  GR +ATGRGV +  E  + E              D
Sbjct: 189 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 248
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
            TFV+QGFGNVG  + R +H  G K IAV +  G++ N DGID  +L   K + GS+  F
Sbjct: 249 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 308
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
                 E S +L  +CD+LIP A    L + NA  VKAK I E AN PT PEAD+I  +R
Sbjct: 309 PKAKPYEGS-ILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 367
Query: 373 GVTILPDIYANSGGVTVSYFEWVQNIQ 399
            + ++PD+Y N+GGVTVSYFEW++N+ 
Sbjct: 368 NIMVIPDLYLNAGGVTVSYFEWLKNLN 394

>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate Dehydrogenase Length = 496

Iteration: 1
 Score =  280 bits (716), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/327 (46%), Positives = 199/327 (60%), Gaps = 15/327 (4%)
Query: 87  IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
           I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GG
Sbjct: 60  IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
           AK G+  +PK  +++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
              GH    + A VTGKPI  GG  GR +ATGRGV +  E  + E              D
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
            TFV+QGFGNVG  + R +H  G K IAV +  G++ N DGID  +L   K + GS+  F
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 299
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
                 E S +L  +CD+LIP A    L + NA  VKAK I E AN PT PEAD+I  +R
Sbjct: 300 PKAKPYEGS-ILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 358
Query: 373 GVTILPDIYANSGGVTVSYFEWVQNIQ 399
            + ++PD+Y N+GGVTVSYFEW++N+ 
Sbjct: 359 NIMVIPDLYLNAGGVTVSYFEWLKNLN 385

>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp, Glu Length = 501

Iteration: 1
 Score =  276 bits (706), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/327 (46%), Positives = 197/327 (60%), Gaps = 15/327 (4%)
Query: 87  IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
           I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GG
Sbjct: 65  IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
           AK G+  +PK  +++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
              GH    + A VTGKPI  GG  GR +ATGRGV +  E  + E              D
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 244
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
            TFV+QGFGNVG  + R +H  G K I V +  G++ N DGID  +L   K + G++  F
Sbjct: 245 KTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
                 E S +L  +CD+LIP A    L + NA  VKAK I E AN PT PEAD+I  +R
Sbjct: 305 PKAKIYEGS-ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 363
Query: 373 GVTILPDIYANSGGVTVSYFEWVQNIQ 399
            + ++PD+Y N+GGVTVSYFEW+ N+ 
Sbjct: 364 NIMVIPDLYLNAGGVTVSYFEWLNNLN 390

>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With Bithionol Length = 501

Iteration: 1
 Score =  276 bits (705), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/327 (45%), Positives = 198/327 (60%), Gaps = 15/327 (4%)
Query: 87  IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
           I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GG
Sbjct: 65  IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
           AK G+  +PK  +++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
              GH    + A VTGKPI  GG  GR +ATGRGV +  E  + E              D
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 244
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
            TF +QGFGNVG  + R +H  G K +AV +  G++ N DGID  +L   K + G++  F
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
                 E S +L  +CD+LIP A    L + NA  VKAK I E AN PT PEAD+I  +R
Sbjct: 305 PKAKIYEGS-ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 363
Query: 373 GVTILPDIYANSGGVTVSYFEWVQNIQ 399
            + ++PD+Y N+GGVTVSYFEW++N+ 
Sbjct: 364 NIMVIPDLYLNAGGVTVSYFEWLKNLN 390

>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 419

Iteration: 1
 Score =  266 bits (679), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 152/399 (38%), Positives = 216/399 (54%), Gaps = 5/399 (1%)
Query: 57  FRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIR 116
              A ++ G+       L  P R + +   +  DDG +  + G+RV HD ARGP KGG+R
Sbjct: 22  LERALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVR 81
Query: 117 YHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHD 176
             P V   +   LA  MT K AV D+P+GGA GGI   PK LS  ELERL R +T ++  
Sbjct: 82  LDPGVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVG 141
Query: 177 LIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGRGV 235
           LIG  +DI  PD+G + Q MAWI+D YS   G + P VVTGKP  LGGS GR+ A G G 
Sbjct: 142 LIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGA 201
Query: 236 VYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGID 295
           +   EAL    G  +R    V+QG G VG+  A      G +V+AV+   G +   +G+D
Sbjct: 202 LLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLD 261
Query: 296 IHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIE 355
           + ++L+  + TGSL   D    + P E+   E +VL+  A  G L  + A  V+A+ ++E
Sbjct: 262 VAEVLSAYEATGSLPRLD----LAPEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVE 317
Query: 356 AANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRY 415
            AN   +PEA+  L  +G  ++PD+ +  GG+  SY EWVQ++  F W  ++V       
Sbjct: 318 VANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYLEWVQDLNMFFWSPEEVRERFETR 377
Query: 416 MIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
           + R    +    +    +LRMGA  L + R+  AT LRG
Sbjct: 378 VARVVDAVCRRAERGGLDLRMGALALALERLDEATRLRG 416

>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And 2-Oxoglutarate Length = 501

Iteration: 1
 Score =  264 bits (674), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 147/341 (43%), Positives = 200/341 (58%), Gaps = 22/341 (6%)
Query: 87  IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
           I +DDGS     G+R QH + R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GG
Sbjct: 65  IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
           AK G+  +PK  ++ +LE++TR FT ++     IG   D+PAP+M T  + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYA 184
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
              GH    + A VTGKPI  GG  GR +ATGRGV +  E  +                D
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIENASYMSILGMTPGFGD 244
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
            TF +QGFGNVG  + R +H  G K +AV +  G++ N DGID  +L   K + G++  F
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
                 E S +L  +CD+LIP A    L + NA  VKAK I E AN PT P+AD+I  +R
Sbjct: 305 PKAKIYEGS-ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLER 363
Query: 373 GVTILPDIYANSGGVTVSYFEWVQNIQ-------GFMWEED 406
            + ++PD+Y N+GGVTVSYF+ ++N+         F +E D
Sbjct: 364 NIMVIPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERD 404

>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase Length = 448

Iteration: 1
 Score =  187 bits (475), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 129/398 (32%), Positives = 189/398 (47%), Gaps = 14/398 (3%)
Query: 70  LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
           LER ++IP R I+       D+G +    G+RVQ + A GP KGG+R+ P V+   +  L
Sbjct: 49  LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 107
Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
                +K ++  +P GGAKGG    P   S+ E+ R  + F  +++  IG   D+PA D+
Sbjct: 108 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 167
Query: 190 GTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ 248
           G  A+ + ++  +Y K   G    V+TGK    GGSL R  ATG G+VY TEA+L  HG 
Sbjct: 168 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLIRPEATGYGLVYFTEAMLKRHGM 227
Query: 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLL----AHKD 304
               +   + G GNV  +A     E G +VI  SD +G V +  G    KL         
Sbjct: 228 GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKAS 287
Query: 305 KTGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAAN 358
           + G + D+    G   +E  +  +   D+ +PCA    L  + A  + A   K + E AN
Sbjct: 288 RDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGAN 347
Query: 359 HPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIR 418
            PT  EA E+  + GV   P   AN+GGV  S  E  QN     W+ +KV+  L   M  
Sbjct: 348 MPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMTD 407
Query: 419 AFHNIKGMCQTHNC--NLRMGAFTLGVNRVARATTLRG 454
                    + +    NL  GA  +G  ++A A   +G
Sbjct: 408 IHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 445

>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source Length = 447

Iteration: 1
 Score =  184 bits (467), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 186/398 (46%), Gaps = 12/398 (3%)
Query: 68  SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVN 127
           S LER L+ P R I+       D   +     +RVQ  +A GP KGG+R+HP V+   + 
Sbjct: 49  SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 128 ALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAP 187
            L    T+K A+  +P GG KGG    PK  S  E+ R  +    +++  +G  TD+PA 
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 188 DMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHG 247
           D+G   + + ++     K   ++  V TGK +  GGSL R  ATG G+VY TEA+L  HG
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 227
Query: 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLL----AHK 303
                +   + G GNV  +A     E G +VI  SD +G V +  G    KL        
Sbjct: 228 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKA 287
Query: 304 DKTGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
            + G + D+    G   +E  +  +   D+ +PCA    L  + A  + A   K + E A
Sbjct: 288 SRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGA 347
Query: 358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMI 417
           N PT  EA E+  + GV   P   AN+GGV  S  E  QN     W+ +KV+  L   M+
Sbjct: 348 NMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIML 407
Query: 418 RAFHN-IKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
              H  ++   +    N   GA   G  +VA A   +G
Sbjct: 408 DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 445

>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli Length = 450

Iteration: 1
 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 186/398 (46%), Gaps = 12/398 (3%)
Query: 68  SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVN 127
           S LER L+ P R I+       D   +     +RVQ  +A GP KGG+R+HP V+   + 
Sbjct: 52  SLLER-LVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 110
Query: 128 ALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAP 187
            L    T+K A+  +P GG KGG    PK  S  E+ R  +    +++  +G  TD+PA 
Sbjct: 111 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 170
Query: 188 DMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHG 247
           D+G   + + ++     K   ++  V TGK +  GGSL R  ATG G+VY TEA+L  HG
Sbjct: 171 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 230
Query: 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLL----AHK 303
                +   + G GNV  +A     E G +VI  SD +G V +  G    KL        
Sbjct: 231 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKS 290
Query: 304 DKTGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
            + G + D+    G   +E  +  +   D+ +PCA    L  + A  + A   K + E A
Sbjct: 291 SRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVDAAHQLIANGVKAVAEGA 350
Query: 358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMI 417
           N PT  EA E+  + GV   P   AN+GGV  S  E  QN     W+ +KV+  L   M+
Sbjct: 351 NMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIML 410
Query: 418 RAFHN-IKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
              H  ++   +    N   GA   G  +VA A   +G
Sbjct: 411 DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 448

>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain Flexibility In Bacterial Glutamate Dehydrogenases Length = 447

Iteration: 1
 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 186/398 (46%), Gaps = 12/398 (3%)
Query: 68  SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVN 127
           S LER L+ P R I+       D   +     +RVQ  +A GP KGG+R+HP V+   + 
Sbjct: 49  SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 128 ALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAP 187
            L    T+K A+  +P GG KGG    PK  S  E+ R  +    +++  +G  TD+PA 
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 188 DMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHG 247
           D+G   + + ++     K   ++  V TGK +  GGSL R  ATG G+VY TEA+L  HG
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 227
Query: 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLL----AHK 303
                +   + G GNV  +A     E G +VI  SD +G V +  G    KL        
Sbjct: 228 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGLVVDESGFTKEKLARLIEIKA 287
Query: 304 DKTGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
            + G + D+    G   +E  +  +   D+ +PCA    L  + A  + A   K + E A
Sbjct: 288 SRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGA 347
Query: 358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMI 417
           N PT  EA E+  + GV   P   AN+GGV  S  E  QN     W+ +KV+  L   M+
Sbjct: 348 NMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIML 407
Query: 418 RAFHN-IKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
              H  ++   +    N   GA   G  +VA A   +G
Sbjct: 408 DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 445

>pdb|1HRD|A Chain A, Glutamate Dehydrogenase Length = 449

Iteration: 1
 Score =  178 bits (452), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/400 (30%), Positives = 193/400 (48%), Gaps = 16/400 (4%)
Query: 70  LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
           LER ++IP R I+       D+G +    G+RVQ + A GP KGG+R+ P V+   +  L
Sbjct: 48  LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 106
Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
                +K ++  +P GGAKGG    P   S+ E+ R  + F  +++  IG   D+PA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 190 GTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ 248
           G  A+ + ++  +Y K   G    V+TGK    GGSL R  ATG G VY  EA++     
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH------ 302
            +   T  + GFGNV   AA+ + E G K + +S   G + + +GI   + + +      
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA 286
Query: 303 --KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
             ++K     D  G       +    + D+++PCA    +  E A  + A   K+ IE A
Sbjct: 287 SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVA 346
Query: 358 NHPTDPEADEILSKR-GVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYM 416
           N PT  EA   L ++  + + P    N+GGV VS FE  QN +   W  ++V+++L + M
Sbjct: 347 NMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVM 406
Query: 417 IRAFHNIKGMCQTHNC--NLRMGAFTLGVNRVARATTLRG 454
                      + +    NL  GA  +G  ++A A   +G
Sbjct: 407 TDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 446

>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase Length = 449

Iteration: 1
 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 192/400 (48%), Gaps = 16/400 (4%)
Query: 70  LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
           LER ++IP R I+       D+G +    G+RVQ + A GP  GG+R+ P V+   +  L
Sbjct: 48  LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
                +K ++  +P GGAKGG    P   S+ E+ R  + F  +++  IG   D+PA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 190 GTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ 248
           G  A+ + ++  +Y K   G    V+TGK    GGSL R  ATG G VY  EA++     
Sbjct: 167 GVGARELGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH------ 302
            +   T  + GFGNV   AA+ + E G K + +S   G + + +GI   + + +      
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA 286
Query: 303 --KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
             ++K     D  G       +    + D+++PCA    +  E A  + A   K+ IE A
Sbjct: 287 SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVA 346
Query: 358 NHPTDPEADEILSKR-GVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYM 416
           N PT  EA   L ++  + + P    N+GGV VS FE  QN +   W  ++V+++L + M
Sbjct: 347 NMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVM 406
Query: 417 IRAFHNIKGMCQTHNC--NLRMGAFTLGVNRVARATTLRG 454
                      + +    NL  GA  +G  ++A A   +G
Sbjct: 407 TDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 446

>pdb|1AUP|A Chain A, Glutamate Dehydrogenase Length = 449

Iteration: 1
 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 191/400 (47%), Gaps = 16/400 (4%)
Query: 70  LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
           LER ++IP R I+       D+G +    G+RVQ + A GP  GG+R+ P V+   +  L
Sbjct: 48  LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
                +K ++  +P GGAKGG    P   S+ E+ R  + F  +++  IG   D+PA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 190 GTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ 248
           G  A+ + ++  +Y K   G    V+TGK    GGSL R  ATG G VY  EA++     
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH------ 302
            +   T  + GFGNV   AA+ + E G K + +S   G + + +GI   + + +      
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA 286
Query: 303 --KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
             ++K     D  G       +    + D+++PCA    +  E A  + A   K+ IE A
Sbjct: 287 SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVA 346
Query: 358 NHPTDPEADEILSKR-GVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYM 416
           N PT  EA   L ++  + + P    N+GGV V  FE  QN +   W  ++V+++L + M
Sbjct: 347 NMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVVGFEMSQNSERLSWTAEEVDSKLHQVM 406
Query: 417 IRAFHNIKGMCQTHNC--NLRMGAFTLGVNRVARATTLRG 454
                      + +    NL  GA  +G  ++A A   +G
Sbjct: 407 TDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 446

>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium Falciparum Glutamate Dehydrogenase 2 Length = 456

Iteration: 1
 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 179/399 (44%), Gaps = 29/399 (7%)
Query: 77  PFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 136
           P R I+       D G      GFRVQ+++  GP KGG+R+HP V+   +  L     +K
Sbjct: 64  PERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFK 123
Query: 137 TAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTM 196
            ++  +P GG KGG    PK  S +E+ +  + F   +   IG +TD+PA D+G   + +
Sbjct: 124 NSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREI 183
Query: 197 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFV 256
            ++  +Y K       V+TGK I  GGS  R  ATG GVVY  E +L +    + +   +
Sbjct: 184 GYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKKCL 243
Query: 257 IQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD 316
           + G GNV  +    + E+G  V+ +SD  G +   +G         K++   + D     
Sbjct: 244 VSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFT-------KEQLNYIMDIKNNQ 296
Query: 317 SMEPSELLAHE---------------CDVLIPCALGGVLKRENAADV----KAKFIIEAA 357
            +   E L +                CD+  PCA    +  EN AD+    K K I+E A
Sbjct: 297 RLRLKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEI-NENDADLFIQNKCKMIVEGA 355
Query: 358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMI 417
           N PT  +A   L +  + + P   AN+GGV VS  E  QN     W   + + +L+  M 
Sbjct: 356 NMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTHQETDMKLQNIMK 415
Query: 418 RAFHNIKGMCQTH--NCNLRMGAFTLGVNRVARATTLRG 454
             +       + +    +L  GA   G  +VA +   +G
Sbjct: 416 SIYEQCHNTSKIYLNESDLVAGANIAGFLKVADSFLEQG 454

>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate Dehydrogenase, A Putative Target For Novel Antimalarial Drugs Length = 470

Iteration: 1
 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 184/394 (46%), Gaps = 18/394 (4%)
Query: 77  PFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 136
           P R I+       D+G       FRVQ+++A GP KGG+R+HP V+   V  L     +K
Sbjct: 77  PERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFK 136
Query: 137 TAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTM 196
            ++  +  GG KGG    PK  S++E+ +  + F  +++  IG  TD+PA D+G   + +
Sbjct: 137 NSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREI 196
Query: 197 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFV 256
            ++  +Y K        +TGK +  GGS  R  ATG G+VY    +L      +   T V
Sbjct: 197 GYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAV 256
Query: 257 IQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGI---DIHKLLAHK-DKTGSLKDF 312
           + G GNV  +  + +     KV+ +SD  G V   +G    ++  L+  K +K G +K++
Sbjct: 257 VSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEY 316
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV-KAKFII--------EAANHPTDP 363
               S   ++   +E    +PC L      +N  D+ +AK +         E AN P+  
Sbjct: 317 LNHSST--AKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTV 374
Query: 364 EADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAF--H 421
           +A  +     +   P   AN+GGV +S  E  QN Q   W  + V+ +L+  M   F   
Sbjct: 375 DAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIAC 434
Query: 422 NIKGMCQTHN-CNLRMGAFTLGVNRVARATTLRG 454
           +   +  T N  +L+ GA   G  +VA +   +G
Sbjct: 435 SENALKYTKNKYDLQAGANIAGFLKVAESYIEQG 468

>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nadh And L-Phenylalanine Length = 355

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
           F ++ D+ + GP  GG R   Y    D   +   LA  MT K AV+++P GG K  I   
Sbjct: 25  FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
           +P+  +  S   R+ R+  + I  L G +     PD+ TN+  M   L++ ++F      
Sbjct: 85  APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 135
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
            V G+ ++ GG+      T  GV  A +A +A  G    D LT ++QG G VG   A L 
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
            E G +++     T  V +A  +  H  +A +D                  +L+  CDV 
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 235
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
            PCA+GGV+  E A  +    +  AAN+   D  A +IL  RG+   PD  AN+GG
Sbjct: 236 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291

>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And L-3-Phenyllactate Length = 355

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
           F ++ D+ + GP  GG R   Y    D   +   LA  MT K AV+++P GG K  I   
Sbjct: 25  FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
           +P+  +  S   R+ R+  + I  L G +     PD+ TN+  M   L++ ++F      
Sbjct: 85  APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 135
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
            V G+ ++ GG+      T  GV  A +A +A  G    D LT ++QG G VG   A L 
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
            E G +++     T  V +A  +  H  +A +D                  +L+  CDV 
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 235
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
            PCA+GGV+  E A  +    +  AAN+   D  A +IL  RG+   PD  AN+GG
Sbjct: 236 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291

>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Beta-Phenylpropionate Length = 356

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
           F ++ D+ + GP  GG R   Y    D   +   LA  MT K AV+++P GG K  I   
Sbjct: 26  FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
           +P+  +  S   R+ R+  + I  L G +     PD+ TN+  M   L++ ++F      
Sbjct: 86  APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 136
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
            V G+ ++ GG+      T  GV  A +A +A  G    D LT ++QG G VG   A L 
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
            E G +++     T  V +A  +  H  +A +D                  +L+  CDV 
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 236
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
            PCA+GGV+  E A  +    +  AAN+   D  A +IL  RG+   PD  AN+GG
Sbjct: 237 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292

>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Beta-Phenylpropionate Length = 356

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
           F ++ D+ + GP  GG R   Y    D   +   LA  MT K AV+++P GG K  I   
Sbjct: 26  FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
           +P+  +  S   R+ R+  + I  L G +     PD+ TN+  M   L++ ++F      
Sbjct: 86  APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 136
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
            V G+ ++ GG+      T  GV  A +A +A  G    D LT ++QG G VG   A L 
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
            E G +++     T  V +A  +  H  +A +D                  +L+  CDV 
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 236
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
            PCA+GGV+  E A  +    +  AAN+   D  A +IL  RG+   PD  AN+GG
Sbjct: 237 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292

>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Phenylpyruvate Length = 356

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
           F ++ D+ + GP  GG R   Y    D   +   LA  MT K AV+++P GG K  I   
Sbjct: 26  FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
           +P+  +  S   R+ R+  + I  L G +     PD+ TN+  M   L++ ++F      
Sbjct: 86  APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 136
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
            V G+ ++ GG+      T  GV  A +A +A  G    D LT ++QG G VG   A L 
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
            E G +++     T  V +A  +  H  +A +D                  +L+  CDV 
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 236
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
            PCA+GGV+  E A  +    +  AAN+   D  A +IL  RG+   PD  AN+GG
Sbjct: 237 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292

>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And L-3-Phenyllactate Length = 355

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
           F ++ D+ + GP  GG R   Y    D   +   LA  MT K AV+++P GG K  I   
Sbjct: 25  FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
           +P+  +  S   R+ R+  + I  L G +     PD+ TN+  M   L++ ++F      
Sbjct: 85  APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 135
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
            V G+ ++ GG+      T  GV  A +A +A  G    D LT ++QG G VG   A L 
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
            E G +++     T  V +A  +  H  +A +D                  +L+  CDV 
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 235
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
            PCA+GGV+  E A  +    +  AAN+   D  A +IL  RG+   PD  AN+GG
Sbjct: 236 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291

>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Phenylpyruvate Length = 356

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
           F ++ D+ + GP  GG R   Y    D   +   LA  MT K AV+++P GG K  I   
Sbjct: 26  FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
           +P+  +  S   R+ R+  + I  L G +     PD+ TN+  M   L++ ++F      
Sbjct: 86  APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 136
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
            V G+ ++ GG+      T  GV  A +A +A  G    D LT ++QG G VG   A L 
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
            E G +++     T  V +A  +  H  +A +D                  +L+  CDV 
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 236
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
            PCA+GGV+  E A  +    +  AAN+   D  A +IL  RG+   PD  AN+GG
Sbjct: 237 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292

>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nadh And L-Phenylalanine Length = 355

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
           F ++ D+ + GP  GG R   Y    D   +   LA  MT K AV+++P GG K  I   
Sbjct: 25  FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
           +P+  +  S   R+ R+  + I  L G +     PD+ TN+  M   L++ ++F      
Sbjct: 85  APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 135
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
            V G+ ++ GG+      T  GV  A +A +A  G    D LT ++QG G VG   A L 
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
            E G +++     T  V +A  +  H  +A +D                  +L+  CDV 
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 235
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
            PCA+GGV+  E A  +    +  AAN+   D  A +IL  RG+   PD  AN+GG
Sbjct: 236 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291

>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A Psychrophilic Bacterium Sporosarcina Psychrophila. Length = 364

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 125/291 (42%), Gaps = 38/291 (13%)
Query: 104 HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELS 159
           HD   GP  GG R   Y  E +  ++   LA+ MT+K A A +  GG K  I  +PK   
Sbjct: 32  HDTTLGPALGGTRMWTYASEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPKTDK 91
Query: 160 NSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI 219
           N E+    R F + I  L G +  I A D+GT    M  I  E           VTG   
Sbjct: 92  NDEM---FRAFGRYIEGLNGRY--ITAEDVGTTEADMDLINLETD--------YVTGTSA 138
Query: 220 DLGGSLGREAATGRGVVYATEALLAEH--GQAIRDLTFVIQGFGNVGSWAARLIHERGGK 277
             G S      T  G+ Y  +A   E     ++   T  +QG GNV       +HE G K
Sbjct: 139 GAGSSGNPSPVTAYGIYYGMKAAAKEAFGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAK 198
Query: 278 VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALG 337
           +I ++DI                 +++      D  G  ++  +E+ + E D+  PCALG
Sbjct: 199 LI-ITDI-----------------NEEAVQRAVDAFGATAVGINEIYSQEADIFAPCALG 240
Query: 338 GVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGGV 387
            ++  E    +KAK I  +AN+   +    +++ + G+   PD   NSGGV
Sbjct: 241 AIINDETIPQLKAKVIAGSANNQLKETRHGDLIHEMGIVYAPDYVINSGGV 291

>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus Length = 364

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 120/291 (41%), Gaps = 38/291 (13%)
Query: 104 HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELS 159
           HD   GP  GG R   Y+ E +  ++   LA+ MT+K A A +  GG K  I   P    
Sbjct: 32  HDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGDPFADK 91
Query: 160 NSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI 219
           N ++ R    F Q ++        I A D+GT    M  I  E     G SPA       
Sbjct: 92  NEDMFRALGRFIQGLNGRY-----ITAEDVGTTVDDMDLIHQETDYVTGISPA------- 139
Query: 220 DLGGSLGREAATGRGVVYATEALLAEH--GQAIRDLTFVIQGFGNVGSWAARLIHERGGK 277
             G S      T  GV    +A   E     ++  L   +QG GNV     + ++  G K
Sbjct: 140 -FGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAK 198
Query: 278 VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALG 337
           ++ V+D+                 +K    +    +G D++ P+ +    CD+  PCALG
Sbjct: 199 LV-VTDV-----------------NKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALG 240
Query: 338 GVLKRENAADVKAKFIIEAA-NHPTDPEADEILSKRGVTILPDIYANSGGV 387
            VL       +KAK I  +A N   DP   + L + G+   PD   N+GGV
Sbjct: 241 AVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGV 291

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	457
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	0.0
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	0.0
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	0.0
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	0.0
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	0.0
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	0.0
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	0.0
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	0.0
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	1e-157
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	1e-155
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	1e-142
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	1e-139
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	1e-138
2yfg_A	447	NADP-specific glutamate dehydrogenase; oxidoreduct	1e-128
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	3e-04

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415

 Score =  678 bits (1753), Expect = 0.0
 Identities = 195/410 (47%), Positives = 267/410 (65%), Gaps = 2/410 (0%)

Query: 48  NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
           +        F  AA ++ L+S L   L  P R + VE  +  DDG +  + G+RVQH+ A
Sbjct: 4   SLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVA 63

Query: 108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
           RGP KGGIRYHP+V  DEV ALA  MTWKTAV ++P+GG KGG+   PK+LS  ELERL+
Sbjct: 64  RGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLS 123

Query: 168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSLG 226
           R F ++I  +IG + DIPAPD+ TNA  +AW +DEY    GH    +VTGKP++LGGS G
Sbjct: 124 RRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKG 183

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIAVSDIT 285
           RE ATGRGV       +   G   +  T  +QGFGNVG +AA LI  E G KV+AVSD  
Sbjct: 184 REEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR 243

Query: 286 GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
           G + N +G D+ +L+ +K + G++  +  G+ +   ELL  + D+L+P AL G +   NA
Sbjct: 244 GGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNA 303

Query: 346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
             +KAK ++E AN PT PEADEILS+RG+ ++PDI AN+GGVTVSYFEWVQ++Q F W+ 
Sbjct: 304 ERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDL 363

Query: 406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           D+V N L + M  AF+++  + + +N ++R  A+ L ++RVA AT  RG 
Sbjct: 364 DQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRGI 413

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440

 Score =  678 bits (1751), Expect = 0.0
 Identities = 177/409 (43%), Positives = 237/409 (57%), Gaps = 1/409 (0%)

Query: 48  NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
                 +         LG  + L  SL  P R + V+  +  DDGS+  + G+RV H+ A
Sbjct: 30  GPWEIFTEQVDRVVPYLGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTA 89

Query: 108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
           RGP KGG+RYHPEV   EV ALA  MT K A   +PYGG KGGI   P++LS  ELERLT
Sbjct: 90  RGPAKGGVRYHPEVTLSEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLT 149

Query: 168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSLG 226
           R +T +I  L+G   DIPAPD+ T  + MAW++D YS   G   P VVTGKPI LGGSLG
Sbjct: 150 RRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLG 209

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           R  ATGRGV     A   + G  +      IQGFGNVG+ AAR  H+ G +V+AV D TG
Sbjct: 210 RRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTG 269

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
            V N  GID + LL H  + G ++ +   + +  ++      + L+P AL   +  +NA 
Sbjct: 270 TVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAW 329

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
            ++A+ + E AN PT P AD+IL ++GV ++PD+ AN+GGVTVSYFEWVQ+   + W E+
Sbjct: 330 RIRARIVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEE 389

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           ++N  L R +  AF  +  + Q     LR  A+ +   RV  A  LRG 
Sbjct: 390 EINARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATRVLEARALRGL 438

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421

 Score =  676 bits (1746), Expect = 0.0
 Identities = 164/416 (39%), Positives = 233/416 (56%), Gaps = 7/416 (1%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           +N L A     R A   LG D  +   L  P R I++   +  DDG++  + G+R  H +
Sbjct: 5   LNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSS 64

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           A GP KGG+R+HP V+ DEV AL+  MT+K     +PYGG KGGI   P ELS  ELE+L
Sbjct: 65  AVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQL 124

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH--SPAVVTGKPIDLGGS 224
           +R + + ++  +G   DIPAPD+ TN Q M+W +DEY K +G        TGKP+  GGS
Sbjct: 125 SRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGS 184

Query: 225 LGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284
            GR  ATG GV           G  + D    +QGFGNVG++  + I  +GGKV A+++ 
Sbjct: 185 EGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEW 244

Query: 285 -----TGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGV 339
                  A+ N +GID  +LLA+K+   +L  F G + +   E    E D+++P AL  V
Sbjct: 245 DRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENV 304

Query: 340 LKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQ 399
           +  E A  + AK + EAAN PT PE D++L++RG+ + PDI  NSGGV VSY+EWVQN  
Sbjct: 305 ITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQNQY 364

Query: 400 GFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           G+ W E +V  +    M++A   +  +   +N  LR   +   +  +  A  LRGW
Sbjct: 365 GYYWTEAEVEEKQEADMMKAIKGVFAVADEYNVTLREAVYMYAIKSIDVAMKLRGW 420

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424

 Score =  673 bits (1740), Expect = 0.0
 Identities = 174/410 (42%), Positives = 260/410 (63%), Gaps = 2/410 (0%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
           +N   +T    + A R LG    +   +  P R + V   +  D+GS+  + G+R QH++
Sbjct: 15  LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND 74

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
           A GP KGG+R+HPEV+ ++V AL+  MT K  +A++PYGG KGGI C P+ +S  ELERL
Sbjct: 75  AVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERL 134

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSL 225
           +R + + I  ++G   DIPAPD+ TN+Q MAW++DEYS+     SP  +TGKP+ LGGS 
Sbjct: 135 SRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQ 194

Query: 226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285
           GRE AT +GV    E  + + G  +++   +IQGFGN GS+ A+ +H+ G KVI +SD  
Sbjct: 195 GRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN 254

Query: 286 GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
           G + N DG+DI  LL  +D  G + +    D +   ELL  +CD+L+P A+   +  +NA
Sbjct: 255 GGLYNPDGLDIPYLLDKRDSFGMVTNL-FTDVITNEELLEKDCDILVPAAISNQITAKNA 313

Query: 346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEE 405
            +++A  ++E AN PT  +A +IL++RGV ++PDI A++GGVTVSYFEWVQN QG+ W E
Sbjct: 314 HNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQNNQGYYWSE 373

Query: 406 DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           ++V  +LR  M+ +F  I     TH  ++R+ A+  G+ + A A+  RGW
Sbjct: 374 EEVAEKLRSVMVSSFETIYQTAATHKVDMRLAAYMTGIRKSAEASRFRGW 423

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419

 Score =  668 bits (1725), Expect = 0.0
 Identities = 180/413 (43%), Positives = 254/413 (61%), Gaps = 5/413 (1%)

Query: 48  NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
           +      +    AA+ + +  +    L  P R ++V   +  DDGS+  + GFRVQH+ A
Sbjct: 4   DPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWA 63

Query: 108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
           RGP KGGIR+HPE     V ALA  MTWKTAV D+PYGG KGGI   PK+LS+ E ERL 
Sbjct: 64  RGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLA 123

Query: 168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH---SPAVVTGKPIDLGGS 224
           R + + I+D+I  + DIPAPD+ TN Q MAW++DEY         +  ++TGKP+ +GGS
Sbjct: 124 RGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGS 183

Query: 225 LGREAATGRGVVYATEALLAEHG-QAIRDLTFVIQGFGNVGSWAARLIHER-GGKVIAVS 282
           LGR  AT RG  Y         G   ++  T  IQG+GN G + A+++ E  G KV+AVS
Sbjct: 184 LGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVS 243

Query: 283 DITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKR 342
           D  G + N DG++  ++L  K++ GS+KDF G  ++   ELL  E DVL P A+  V+ +
Sbjct: 244 DSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITK 303

Query: 343 ENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFM 402
           +NA ++KAK + E AN P  PEADEIL ++G+  +PD   N+GGVTVSYFEWVQNI G+ 
Sbjct: 304 KNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYY 363

Query: 403 WEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           W  ++V   L + M +AF+++  + +  N ++R  A+ + V RV +A   RGW
Sbjct: 364 WTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 416

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419

 Score =  654 bits (1689), Expect = 0.0
 Identities = 152/409 (37%), Positives = 214/409 (52%), Gaps = 5/409 (1%)

Query: 48  NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
                       A ++ G+       L  P R + +   +  DDG +  + G+RV HD A
Sbjct: 13  GLWDTYLEWLERALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIA 72

Query: 108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
           RGP KGG+R  P V   +   LA  MT K AV D+P+GGA GGI   PK LS  ELERL 
Sbjct: 73  RGPAKGGVRLDPGVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLV 132

Query: 168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSLG 226
           R +T ++  LIG  +DI  PD+G + Q MAWI+D YS   G   P VVTGKP  LGGS G
Sbjct: 133 RRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEG 192

Query: 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286
           R+ A G G +   EAL    G  +R    V+QG G VG+  A      G +V+AV+   G
Sbjct: 193 RDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMG 252

Query: 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAA 346
            +   +G+D+ ++L+  + TGSL   D      P E+   E +VL+  A  G L  + A 
Sbjct: 253 GMYAPEGLDVAEVLSAYEATGSLPRLDLA----PEEVFGLEAEVLVLAAREGALDGDRAR 308

Query: 347 DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEED 406
            V+A+ ++E AN   +PEA+  L  +G  ++PD+ +  GG+  SY EWVQ++  F W  +
Sbjct: 309 QVQAQAVVEVANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYLEWVQDLNMFFWSPE 368

Query: 407 KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           +V       + R    +    +    +LRMGA  L + R+  AT LRG 
Sbjct: 369 EVRERFETRVARVVDAVCRRAERGGLDLRMGALALALERLDEATRLRGV 417

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421

 Score =  652 bits (1685), Expect = 0.0
 Identities = 163/417 (39%), Positives = 232/417 (55%), Gaps = 8/417 (1%)

Query: 47  MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
              L       +    + G      + L  P R + V   +  D G    + G+RVQH +
Sbjct: 4   TGFLEYVLNYVKKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCD 63

Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
             GP KGG+R+HPEV   +  ALA LMT K ++A +PYGGAKG +   PK+LS  ELE L
Sbjct: 64  VLGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEEL 123

Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSL 225
           +R + + I  LIG   DIPAPD+GTNAQ MAW++DEYSK  G+  P V T KP +L G+ 
Sbjct: 124 SRGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNP 183

Query: 226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285
            RE ATG GV  AT  +  +    I   T  IQG GNVG W A  + + G KVIAVSDI 
Sbjct: 184 VREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN 243

Query: 286 GAVKNADGIDIHKLLAHKDKTGS-----LKDFDGGDSME-PSELLAHECDVLIPCALGGV 339
           G     +G+++  +  +K  TG          D  + ++ P  +   + D+ +P A+  V
Sbjct: 244 GVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENV 303

Query: 340 LKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQ 399
           ++ +NA  VKA+ ++E AN PT PEA+ IL +RGV ++PDI AN+GGV +SY EWV+N+Q
Sbjct: 304 IRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENLQ 363

Query: 400 GFMWEEDKVNNELRRYMIRAFHNI-KGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
            ++W+E++    L   M+     + K   +     +R  A    + R+  A  +RGW
Sbjct: 364 WYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW 420

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501

 Score =  595 bits (1536), Expect = 0.0
 Identities = 166/489 (33%), Positives = 229/489 (46%), Gaps = 67/489 (13%)

Query: 32  FSSLLTCFESFRIIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDD 91
           F  +   F+    IV + L    +      +       + R +      + +   I +DD
Sbjct: 10  FKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDD 69

Query: 92  GSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGI 151
           GS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+
Sbjct: 70  GSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGV 129

Query: 152 GCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH 209
             +PK  +++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+   GH
Sbjct: 130 KINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGH 189

Query: 210 ----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQA--------IRDLTFVI 257
               + A VTGKPI  GG  GR +ATGRGV +  E  + E              D TFV+
Sbjct: 190 YDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVV 249

Query: 258 QGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDS 317
           QGFGNVG  + R +H  G K I V +  G++ N DGID  +L   K + G++  F     
Sbjct: 250 QGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAK- 308

Query: 318 MEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTIL 377
           +    +L  +CD+LIP A    L + NA  VKAK I E AN PT PEAD+I  +R + ++
Sbjct: 309 IYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVI 368

Query: 378 PDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRY---------------------- 415
           PD+Y N+GGVTVSYFEW+ N+    +       E                          
Sbjct: 369 PDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTI 428

Query: 416 ----------------------------MIRAFHNIKGMCQTHN--CNLRMGAFTLGVNR 445
                                       M R+   I      +N   +LR  A+   + +
Sbjct: 429 PIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEK 488

Query: 446 VARATTLRG 454
           V R     G
Sbjct: 489 VFRVYNEAG 497

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score =  448 bits (1156), Expect = e-157
 Identities = 87/386 (22%), Positives = 136/386 (35%), Gaps = 47/386 (12%)

Query: 77  PFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRY----HPEVDPDEVNALAQL 132
             +    +    +D+ S          HD   GP  GG R       E   ++   LA+ 
Sbjct: 7   MEKYDYEQLVFCQDEAS--GLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARG 64

Query: 133 MTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTN 192
           MT+K A A +  GG K  I   P    N ++ R    F Q ++        I A D+GT 
Sbjct: 65  MTYKNAAAGLNLGGGKTVIIGDPFADKNEDMFRALGRFIQGLNG-----RYITAEDVGTT 119

Query: 193 AQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEH--GQAI 250
              M  I  E           VTG     G S      T  GV    +A   E     ++
Sbjct: 120 VDDMDLIHQETD--------YVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSL 171

Query: 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310
             L   +QG GNV     + ++  G K++                      +K    +  
Sbjct: 172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDV------------------NKAAVSAAV 213

Query: 311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAA-NHPTDPEADEIL 369
             +G D++ P+ +    CD+  PCALG VL       +KAK I  +A N   DP   + L
Sbjct: 214 AEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYL 273

Query: 370 SKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQT 429
            + G+   PD   N+GGV     E       + +   +    +   +  +   I  + + 
Sbjct: 274 HELGIVYAPDYVINAGGVINVADEL------YGYNRTRAMKRVDG-IYDSIEKIFAISKR 326

Query: 430 HNCNLRMGAFTLGVNRVARATTLRGW 455
                 + A  +   R+A+    R  
Sbjct: 327 DGVPSYVAADRMAEERIAKVAKARSQ 352

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355

 Score =  444 bits (1144), Expect = e-155
 Identities = 94/380 (24%), Positives = 144/380 (37%), Gaps = 44/380 (11%)

Query: 84  ECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDE----VNALAQLMTWKTAV 139
           E T+ + D                 GP  GG R     +  +       LA  MT K AV
Sbjct: 11  EMTVTRFDAMTG-AHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAV 69

Query: 140 ADIPYGGAKGGIGCSPK--ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMA 197
           +++P GG K  I        +  S   R+ R+  + I  L G       PD+ TN+  M 
Sbjct: 70  SNLPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSG--NYWTGPDVNTNSADMD 127

Query: 198 WILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHG-QAIRDLTFV 256
            + D            V G+ ++ GG+      T  GV  A +A +A  G  ++  LT +
Sbjct: 128 TLNDTTE--------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVL 179

Query: 257 IQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD 316
           +QG G VG   A L  E G +++     T  V +A  +                   G  
Sbjct: 180 VQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHT 220

Query: 317 SMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVT 375
           ++   ++L+  CDV  PCA+GGV+  E A  +    +  AAN+   D  A +IL  RG+ 
Sbjct: 221 AVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 280

Query: 376 ILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLR 435
             PD  AN+GG        +   +   W E  V+      +    + +  +         
Sbjct: 281 YAPDFVANAGGAI-----HLVGREVLGWSESVVHERAVA-IGDTLNQVFEISDNDGVTPD 334

Query: 436 MGAFTLGVNRVARATTLRGW 455
             A TL   R   A+T    
Sbjct: 335 EAARTLAGRRAREASTTTAT 354

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Length = 449

 Score =  414 bits (1067), Expect = e-142
 Identities = 121/401 (30%), Positives = 192/401 (47%), Gaps = 16/401 (3%)

Query: 70  LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
           LER ++IP R I+       D+G +    G+RVQ + A GP KGG+R+ P V+   +  L
Sbjct: 48  LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 106

Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
                +K ++  +P GGAKGG    P   S+ E+ R  + F  +++  IG   D+PA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166

Query: 190 GTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ 248
           G  A+ + ++  +Y K  G     V+TGK    GGSL R  ATG G VY  EA++     
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226

Query: 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHK----- 303
            +   T  + GFGNV   AA+ + E G K + +S   G + + +GI   + + +      
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA 286

Query: 304 DKTGSLKDF---DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
                ++D+    G       +    + D+++PCA    +  E A  + A   K+ IE A
Sbjct: 287 SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVA 346

Query: 358 NHPTDPEADEIL-SKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYM 416
           N PT  EA   L  +  + + P    N+GGV VS FE  QN +   W  ++V+++L + M
Sbjct: 347 NMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVM 406

Query: 417 IRAFHNIKGMCQTHNC--NLRMGAFTLGVNRVARATTLRGW 455
                      + +    NL  GA  +G  ++A A   +G 
Sbjct: 407 TDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI 447

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Length = 456

 Score =  405 bits (1043), Expect = e-139
 Identities = 115/399 (28%), Positives = 179/399 (44%), Gaps = 14/399 (3%)

Query: 70  LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
           LE  +  P R I+       D G      GFRVQ+++  GP KGG+R+HP V+   +  L
Sbjct: 58  LEN-IAEPERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFL 116

Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
                +K ++  +P GG KGG    PK  S +E+ +  + F   +   IG +TD+PA D+
Sbjct: 117 GFEQIFKNSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDI 176

Query: 190 GTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQA 249
           G   + + ++  +Y K       V+TGK I  GGS  R  ATG GVVY  E +L +    
Sbjct: 177 GVGGREIGYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDN 236

Query: 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKD----K 305
           + +   ++ G GNV  +    + E+G  V+ +SD  G +   +G    +L    D    +
Sbjct: 237 LENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQ 296

Query: 306 TGSLKD----FDGGDSMEPSELLAHECDVLIPCALGGVLKRENA---ADVKAKFIIEAAN 358
              LK+           E  +     CD+  PCA    +   +A      K K I+E AN
Sbjct: 297 RLRLKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEINENDADLFIQNKCKMIVEGAN 356

Query: 359 HPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIR 418
            PT  +A   L +  + + P   AN+GGV VS  E  QN     W   + + +L+  M  
Sbjct: 357 MPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTHQETDMKLQNIMKS 416

Query: 419 AFHNIKGMCQTHNC--NLRMGAFTLGVNRVARATTLRGW 455
            +       + +    +L  GA   G  +VA +   +G 
Sbjct: 417 IYEQCHNTSKIYLNESDLVAGANIAGFLKVADSFLEQGG 455

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Length = 470

 Score =  404 bits (1041), Expect = e-138
 Identities = 109/400 (27%), Positives = 174/400 (43%), Gaps = 15/400 (3%)

Query: 70  LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
           +E  L  P R I+       D+G       FRVQ+++A GP KGG+R+HP V+   V  L
Sbjct: 71  IET-LSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFL 129

Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
                +K ++  +  GG KGG    PK  S++E+ +  + F  +++  IG  TD+PA D+
Sbjct: 130 GFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDI 189

Query: 190 GTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQA 249
           G   + + ++  +Y K        +TGK +  GGS  R  ATG G+VY    +L      
Sbjct: 190 GVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIP 249

Query: 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKD----K 305
           +   T V+ G GNV  +  + +     KV+ +SD  G V   +G     L    D    K
Sbjct: 250 VEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEK 309

Query: 306 TGSLKD----FDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAAN 358
            G +K+              +     C +  PCA    +  + A  ++      + E AN
Sbjct: 310 KGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGAN 369

Query: 359 HPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIR 418
            P+  +A  +     +   P   AN+GGV +S  E  QN Q   W  + V+ +L+  M  
Sbjct: 370 MPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRN 429

Query: 419 AFHNIKGMCQTHN---CNLRMGAFTLGVNRVARATTLRGW 455
            F         +     +L+ GA   G  +VA +   +G 
Sbjct: 430 IFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGC 469

>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A {Escherichia coli} PDB: 3sbo_A 2yfg_E Length = 447

 Score =  378 bits (973), Expect = e-128
 Identities = 127/397 (31%), Positives = 183/397 (46%), Gaps = 12/397 (3%)

Query: 70  LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
           LER L+ P R I+       D   +     +RVQ  +A GP KGG+R+HP V+   +  L
Sbjct: 51  LER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFL 109

Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
               T+K A+  +P GG KGG    PK  S  E+ R  +    +++  +G  TD+PA D+
Sbjct: 110 GFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDI 169

Query: 190 GTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQA 249
           G   + + ++     K   ++  V TGK +  GGSL R  ATG G+VY TEA+L  HG  
Sbjct: 170 GVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMG 229

Query: 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKD----K 305
              +   + G GNV  +A     E G +VI  SD +G V +  G    KL    +    +
Sbjct: 230 FEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASR 289

Query: 306 TGSLKDF---DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAANH 359
            G + D+    G   +E  +  +   D+ +PCA    L  + A  + A   K + E AN 
Sbjct: 290 DGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANM 349

Query: 360 PTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRA 419
           PT  EA E+  + GV   P   AN+GGV  S  E  QN     W+ +KV+  L   M+  
Sbjct: 350 PTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDI 409

Query: 420 FHNIKGMCQTHN-CNLRMGAFTLGVNRVARATTLRGW 455
            H            N   GA   G  +VA A   +G 
Sbjct: 410 HHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGV 446

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} Length = 325

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 259 GFGNVGSWAARLIHE-------RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD 311
           G GNVG    R+I            KV+ VSD          +DI  ++++K+KTG + D
Sbjct: 11  GTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASG-RNLDISSIISNKEKTGRISD 69

Query: 312 FDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAA 357
                   P +L+    D+L+ C              +   +   A
Sbjct: 70  RAFSG---PEDLMGEAADLLVDC-TPASRDGV-----REYSLYRMA 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	457
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	100.0
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	100.0
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	100.0
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	100.0
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	100.0
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	100.0
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	100.0
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	100.0
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	100.0
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	100.0
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	100.0
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	100.0
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	100.0
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	100.0
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	97.85
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	97.81
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.68
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.66
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.58
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.56
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.53
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.5
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.46
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.39
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.35
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.34
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.33
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.32
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.32
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.31
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.28
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.24
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.23
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.22
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.22
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.2
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.19
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	97.13
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.13
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	97.12
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.11
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.07
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.02
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.02
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.02
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.99
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.97
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.91
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.89
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.86
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.82
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.81
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.81
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.79
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.78
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.75
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.71
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.71
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.71
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.68
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.68
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.66
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.65
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.64
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.63
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.62
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.56
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.55
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.53
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.51
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.47
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.45
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.44
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.44
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.43
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.42
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.37
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.37
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.37
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.36
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.3
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.25
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.24
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	96.19
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.18
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.15
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.14
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.1
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.08
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.07
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	96.06
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.02
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.01
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.98
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	95.95
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.93
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.81
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.81
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	95.78
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	95.76
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.76
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.75
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.73
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	95.71
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.7
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	95.55
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.49
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.48
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	95.46
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.43
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.42
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.41
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.41
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	95.4
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.33
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	95.25
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.23
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.22
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.19
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.14
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.13
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.12
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	95.11
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.1
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.09
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	95.09
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.08
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.04
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	95.0
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	94.99
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.94
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.92
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	94.92
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.91
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	94.9
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	94.83
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	94.82
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	94.76
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	94.67
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.64
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	94.58
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	94.57
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.55
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	94.54
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.49
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	94.46
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	94.45
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	94.45
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.44
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.42
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.37
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	94.32
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	94.3
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	94.23
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	94.2
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	94.04
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.99
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.95
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	93.94
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	93.9
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.9
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.89
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	93.88
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.87
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	93.83
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.73
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	93.72
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	93.65
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	93.62
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	93.56
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.55
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	93.49
1ydw_A	362	AX110P-like protein; structural genomics, protein	93.46
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	93.46
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.38
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	93.3
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.27
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	93.26
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	93.21
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.17
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	93.12
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	93.11
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	93.11
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.1
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.09
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	93.05
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	92.99
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	92.92
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	92.9
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	92.8
4had_A	350	Probable oxidoreductase protein; structural genomi	92.79
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.74
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.73
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	92.61
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.58
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.56
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	92.55
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	92.51
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.49
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	92.37
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.36
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	92.28
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.25
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	92.23
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	92.15
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	92.15
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	92.11
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	92.05
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.04
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.94
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	91.83
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	91.83
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.75
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	91.72
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	91.67
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	91.58
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	91.49
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.29
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.18
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	91.04
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.04
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	90.95
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	90.88
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	90.87
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	90.78
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	90.75
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	90.69
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	90.63
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.62
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	90.59
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	90.57
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	90.57
4h3v_A	390	Oxidoreductase domain protein; structural genomics	90.47
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	90.29
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	90.25
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	90.05
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	90.02
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	90.0
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	89.97
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	89.88
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	89.86
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	89.81
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	89.76
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	89.72
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	89.7
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	89.67
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	89.57
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	89.55
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	89.44
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	89.4
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	89.35
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	89.33
2duw_A	145	Putative COA-binding protein; ligand binding prote	89.26
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	88.83
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	88.71
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	88.55
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	88.35
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	88.17
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	88.15
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	88.07
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	88.06
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	88.02
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	87.94
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	87.89
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	87.8
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	87.78
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	87.78
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	87.61
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	87.37
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	87.34
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	87.19
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	87.18
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	86.98
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	86.93
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	86.92
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	86.86
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	86.67
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	86.45
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	86.34
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	86.32
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	86.32
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	86.2
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	86.19
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	86.18
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	86.09
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	86.08
4hb9_A	412	Similarities with probable monooxygenase; flavin,	86.07
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	85.84
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	85.83
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	85.81
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	85.8
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	85.71
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	85.6
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	85.54
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	85.23
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	85.12
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	84.96
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	84.63
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	84.46
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	84.21
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	84.16
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	84.08
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	84.06
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	84.03
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	84.0
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	83.95
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	83.88
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	83.87
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	83.87
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	83.81
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	83.77
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	83.72
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	84.19
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	83.63
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	83.61
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	83.61
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	83.57
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	83.56
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	83.53
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	83.28
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	83.27
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	83.16
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	83.16
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	83.04
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	83.02
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	82.92
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	82.89
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	82.83
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	82.68
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	82.67
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	82.65
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	82.59
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	82.56
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	82.51
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	82.47
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	82.37
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	82.31
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	82.29
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	82.21
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	82.12
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	82.11
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	81.89
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	81.88
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	81.8
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	81.79
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	81.72
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	81.71
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	81.69
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	81.66
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	81.6
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	81.58
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	81.56
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	81.49
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	81.47
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	81.46
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	81.44
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	81.4
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	81.32
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	81.27
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	81.27
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	81.23
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	81.22
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	81.12
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	81.07
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	81.02
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	80.95
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	80.92
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	80.89
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	80.86
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	80.8
4g65_A	461	TRK system potassium uptake protein TRKA; structur	80.74
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	80.69
4dqx_A	277	Probable oxidoreductase protein; structural genomi	80.68
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	80.65
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	80.64
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	80.63
3imf_A	257	Short chain dehydrogenase; structural genomics, in	80.54
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	80.52
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	80.36
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	80.18
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	80.16
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	80.11
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	80.09
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	80.03

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=100.00  E-value=1.3e-127  Score=997.46  Aligned_cols=411  Identities=42%  Similarity=0.791  Sum_probs=404.0

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHH
Q 012750           45 IVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPD  124 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~  124 (457)
                      +..++|+++++||++|+++++++|+++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++
T Consensus        13 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~vp~~~d~G~~~v~~GyRvqhn~a~GP~kGGiR~~p~v~~~   92 (424)
T 3k92_A           13 EALNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHPEVNEE   92 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSSCSEEEEEEEEEECTTSCEEEEEEEEEECCCSSSSEECCEEEETTCCHH
T ss_pred             ccCCHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCeEEEEEEEEEecCCcEEEEEEEEEEECCcCCCCCCCeEecCCCCHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhh
Q 012750          125 EVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS  204 (457)
Q Consensus       125 ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~  204 (457)
                      ||++||++|||||||++||||||||||++||+++|+.|+||++|+|+++|.+++||+.||||||+||++++|+||+|+|+
T Consensus        93 ev~~La~~mt~KnAl~~lP~GGgKggi~~DP~~~s~~El~r~~r~f~~~l~~~iG~~~dipApDvgt~~~~m~~~~~~y~  172 (424)
T 3k92_A           93 KVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYS  172 (424)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCcceEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCccCCcCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCC-CceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750          205 KFHGHS-PAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       205 ~~~g~~-~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +++|++ |+++||||..+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|++.|+|||+|||
T Consensus       173 ~~~g~~~~~~vTGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD  252 (424)
T 3k92_A          173 RLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISD  252 (424)
T ss_dssp             HHHTSCCGGGCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHhCCCCcceeecccccCCCcCCCcccHHHHHHHHHHHHHHHcCCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            999974 7999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCH
Q 012750          284 ITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDP  363 (457)
Q Consensus       284 ~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~  363 (457)
                      ++|++|||+|||+++|++++++++++.+|+ ++.++++++|+.+||||+|||++|+||++|+++++||+|+||||+|+||
T Consensus       253 ~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~-a~~~~~~~i~~~~~DIliPcA~~n~I~~~~a~~l~ak~V~EgAN~p~t~  331 (424)
T 3k92_A          253 ANGGLYNPDGLDIPYLLDKRDSFGMVTNLF-TDVITNEELLEKDCDILVPAAISNQITAKNAHNIQASIVVERANGPTTI  331 (424)
T ss_dssp             SSCEEECTTCCCHHHHHHHCCSSSCCGGGC-SCCBCHHHHHHSCCSEEEECSCSSCBCTTTGGGCCCSEEECCSSSCBCH
T ss_pred             CCCcEECCCCCCHHHHHHHHHHhCCCCCCC-cEEecCccceeccccEEeecCcccccChhhHhhcCceEEEcCCCCCCCH
Confidence            999999999999999999999999999998 7888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 012750          364 EADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGV  443 (457)
Q Consensus       364 ~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~  443 (457)
                      +|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++++++++.++++++++|+|||++|+
T Consensus       332 eA~~iL~~rGI~~~PD~~aNAGGV~vS~~E~~qn~~~~~w~~eeV~~~l~~~m~~~~~~v~~~a~~~~~~~~~aA~~~a~  411 (424)
T 3k92_A          332 DATKILNERGVLLVPDILASAGGVTVSYFEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKVDMRLAAYMTGI  411 (424)
T ss_dssp             HHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEECchHhcCCCEEeehhHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCcc
Q 012750          444 NRVARATTLRGWE  456 (457)
Q Consensus       444 ~rv~~a~~~rG~~  456 (457)
                      +||+++|+.|||+
T Consensus       412 ~rva~a~~~~G~~  424 (424)
T 3k92_A          412 RKSAEASRFRGWV  424 (424)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999985

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=100.00  E-value=4.9e-124  Score=975.27  Aligned_cols=411  Identities=43%  Similarity=0.726  Sum_probs=404.9

Q ss_pred             CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHH
Q 012750           47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEV  126 (457)
Q Consensus        47 ~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev  126 (457)
                      .+|||+++.+|++|+++++++|+++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||++|++||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~r~i~~~~p~~~D~G~~~~~~G~rvqhn~a~GPakGGiR~~p~v~~~ev  108 (440)
T 3aog_A           29 GGPWEIFTEQVDRVVPYLGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEV  108 (440)
T ss_dssp             CTHHHHHHHHHHHHGGGCGGGGGGGGGGGSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTTSSEECCEEECTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEEEEEEecCCCEEEEEEEEEEECCCCCCCcCCeEEEecCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q 012750          127 NALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF  206 (457)
Q Consensus       127 ~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~  206 (457)
                      ++||++|||||||++||||||||||++||+.+|+.|+||++|+|+++|.+++||+.||||||+||++++|+||+++|+++
T Consensus       109 ~~La~~mt~KnAl~~lP~GGgKGgi~~dP~~~s~~Eler~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~  188 (440)
T 3aog_A          109 MALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMN  188 (440)
T ss_dssp             HHHHHHHHHHHHHHTCSCCEEEEEEECCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCcceEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC-CCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          207 HGH-SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       207 ~g~-~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .|+ +|+++||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|.+.|+|||+|+|++
T Consensus       189 ~~~~~~g~vTGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~  268 (440)
T 3aog_A          189 VGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHT  268 (440)
T ss_dssp             HTSCCGGGSSSCCGGGTCCTTCTTHHHHHHHHHHHHHHHHHTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             hCCCCCCeEeccchhhCCCCCCCcchHHHHHHHHHHHHHhcCCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            987 4899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHH
Q 012750          286 GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEA  365 (457)
Q Consensus       286 G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a  365 (457)
                      |++|||+|||+++|++++++++++.+|++++.++++++|+.+||||+|||++|+||.+||++++||+|+||||+|+||+|
T Consensus       269 G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~~~DIlvPcA~~n~i~~~na~~l~ak~VvEgAN~p~t~eA  348 (440)
T 3aog_A          269 GTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTTPAA  348 (440)
T ss_dssp             CEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTCCCSEEEECSSSSCBCTTTGGGCCCSEEECCSSSCBCHHH
T ss_pred             cEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcCCCcEEEecCCcCccchhhHHHcCCcEEEecCccccCHHH
Confidence            99999999999999999999999999999998888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 012750          366 DEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNR  445 (457)
Q Consensus       366 ~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~r  445 (457)
                      +++|++|||+|+||+++|+|||++|||||+||+++++|++|+|+++|+++|.++++++++.|+++++++|+|||++|++|
T Consensus       349 ~~iL~~~GI~~~PD~~aNaGGV~vS~~E~~qN~~~~~w~~eev~~~l~~im~~~~~~v~~~a~~~~~~~~~aA~~~a~~r  428 (440)
T 3aog_A          349 DDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATR  428 (440)
T ss_dssp             HHHHHHHTCEEECHHHHTTHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEChHHHhCCCceEEEEEEEecCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCccC
Q 012750          446 VARATTLRGWEA  457 (457)
Q Consensus       446 v~~a~~~rG~~~  457 (457)
                      |+++|+.|||+.
T Consensus       429 va~a~~~~G~~p  440 (440)
T 3aog_A          429 VLEARALRGLYP  440 (440)
T ss_dssp             HHHHHHHHCCCC
T ss_pred             HHHHHHhcCCCC
Confidence            999999999864

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=100.00  E-value=1.1e-123  Score=971.76  Aligned_cols=412  Identities=28%  Similarity=0.445  Sum_probs=398.5

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCChHH---HHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCC
Q 012750           45 IVMNALAATSRNFRNAARILGLDSKL---ERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEV  121 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~  121 (457)
                      ...+|+|.+..+|+.++++++++|++   +++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||++
T Consensus        29 ~~~ef~qa~~e~~~~~~~~~~~~p~~~~~~~~l~~P~r~i~~~vp~~~D~G~~~v~~GyRvqhn~a~GPakGGiR~~p~v  108 (456)
T 3r3j_A           29 NEPEFLQAFEEVLSCLKPVFKKDNVYIGVLENIAEPERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAV  108 (456)
T ss_dssp             TCHHHHHHHHHHHHHTHHHHHHCTHHHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECTTC
T ss_pred             CCCcHHHHHHHHHHHHHHHHhhChHhhHHHHhccCCceEEEEEEEEEeCCCcEEEEEEEEEEECCcCCCccCceEecCCC
Confidence            45678999999999999999999986   999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHH
Q 012750          122 DPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILD  201 (457)
Q Consensus       122 ~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d  201 (457)
                      |++|+++||++|||||||++||||||||||++||+++|+.|++|++|+|+++|.++|||+.||||||+||++++|+||+|
T Consensus       109 ~~~ev~~La~~mt~KnAl~~lP~GGgKGgi~~DPk~~s~~el~r~~r~f~~eL~~~iGp~~DvpApDvGt~~~em~w~~~  188 (456)
T 3r3j_A          109 NLSVIKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFG  188 (456)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSSCCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcceeEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750          202 EYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       202 ~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  281 (457)
                      +|++..+.+++++||||..+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|++.|+|||+|
T Consensus       189 ~y~~~~~~~~g~vTGKp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVav  268 (456)
T 3r3j_A          189 QYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTM  268 (456)
T ss_dssp             HHHHHHTSCCCSCBSCCGGGTCCTTTTTHHHHHHHHHHHHHHHTTTCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCE
T ss_pred             HHHhhcCcccceecCCcccccCCCCCCcccchHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            99999988899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeeCCCCCCHHHHHHh---Hhhc-CCcccC----CCCeecCCCcccccccceeeccccCCcccccccccc---cc
Q 012750          282 SDITGAVKNADGIDIHKLLAH---KDKT-GSLKDF----DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KA  350 (457)
Q Consensus       282 sD~~G~iynp~GLDi~~L~~~---~~~~-g~~~~~----~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i---~a  350 (457)
                      ||++|++|||+|||+++|.++   ++++ +++.+|    |+++.++++++|+.+||||+|||++|+||++||+++   +|
T Consensus       269 sD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v~~~~i~~~~~DI~iPcA~~~~I~~~na~~l~~~~a  348 (456)
T 3r3j_A          269 SDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEINENDADLFIQNKC  348 (456)
T ss_dssp             ECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEECSCCGGGSCCSEEEECSCTTCBCHHHHHHHHHHTC
T ss_pred             ECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEeCCccccccCccEEEeCCCccchhhHHHHHHHhcCC
Confidence            999999999999999999865   4443 456655    788999999999999999999999999999999999   99


Q ss_pred             eEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012750          351 KFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTH  430 (457)
Q Consensus       351 kiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~  430 (457)
                      |+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||.++++|++|+|+++|+++|.++|+++++.++++
T Consensus       349 k~V~EgAN~p~T~eA~~iL~~rGI~~~PD~~aNAGGV~vS~~E~~qn~~~~~w~~eeV~~~L~~im~~~~~~~~~~a~~~  428 (456)
T 3r3j_A          349 KMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTHQETDMKLQNIMKSIYEQCHNTSKIY  428 (456)
T ss_dssp             CEEECCSSSCBCTTHHHHHHTTTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCCCCCCHHHHHHHHHCCCEEeChHHhcCCceeeehHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC--CHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          431 NC--NLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       431 ~~--~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                      ++  ++|+|||+.|++||++||+.||+.
T Consensus       429 ~~~~~~r~aA~i~~~~rva~a~~~~G~~  456 (456)
T 3r3j_A          429 LNESDLVAGANIAGFLKVADSFLEQGGL  456 (456)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHhccHHHHHHHHHHHHhcCCC
Confidence            88  999999999999999999999984

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=100.00  E-value=2.9e-122  Score=958.18  Aligned_cols=409  Identities=37%  Similarity=0.627  Sum_probs=400.8

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHH
Q 012750           45 IVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPD  124 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~  124 (457)
                      ...+|||+++.+|++|+++++++|+++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||++|++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~r~i~~~~p~~~D~G~~~~~~g~rv~hn~~~GPakGGiR~~p~v~~~   89 (419)
T 3aoe_E           10 EDPGLWDTYLEWLERALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDPGVTLG   89 (419)
T ss_dssp             SCCHHHHHHHHHHHHHHTTSCCCHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCHHHHhhcCCCCeEEEEEEEEEecCCCEEEEEEEEEEECCCCCCCcCCeEecCCCCHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhh
Q 012750          125 EVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS  204 (457)
Q Consensus       125 ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~  204 (457)
                      ||++||++|||||||++||||||||||++||+++|+.|+||++|+|+++|.+++||+.||||||+||++++|+||+++|+
T Consensus        90 ev~~La~~mt~KnAl~~lP~GGgKGgi~~dP~~~s~~El~r~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~  169 (419)
T 3aoe_E           90 QTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYS  169 (419)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEEEEEECSCGGGSCHHHHHHHHHHHHHHHTTTCBTTTEEEEEBTTBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCCCccEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEECCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCC-CceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750          205 KFHGHS-PAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       205 ~~~g~~-~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +..+++ |+++||||..+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|++.|+|||+|||
T Consensus       170 ~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD  249 (419)
T 3aoe_E          170 MTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVAT  249 (419)
T ss_dssp             HHHTSCCGGGBSSCCGGGTCCSSCSCHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HhhCCCCCCeeeccchhcCCCCCCccchHHHHHHHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEc
Confidence            999874 8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCH
Q 012750          284 ITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDP  363 (457)
Q Consensus       284 ~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~  363 (457)
                      ++|++|||+|||+++|++++++++++.+|    .++++++|..+||||+|||++|+||.+||++++||+|+||||+|+||
T Consensus       250 ~~G~i~dp~Gld~~~l~~~~~~~g~v~~~----~~~~~e~~~~~~DVliP~A~~n~i~~~~A~~l~ak~V~EgAN~p~t~  325 (419)
T 3aoe_E          250 SMGGMYAPEGLDVAEVLSAYEATGSLPRL----DLAPEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVEVANFGLNP  325 (419)
T ss_dssp             TTEEEECTTCCCHHHHHHHHHHHSSCSCC----CBCTTTGGGSSCSEEEECSCTTCBCHHHHTTCCCSEEEECSTTCBCH
T ss_pred             CCCeEECCCCCCHHHHHHHHHhhCCccee----eccchhhhccCceEEEecccccccccchHhhCCceEEEECCCCcCCH
Confidence            99999999999999999999998888887    46788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 012750          364 EADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGV  443 (457)
Q Consensus       364 ~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~  443 (457)
                      +|+++|++|||+|+||+++|||||++|||||+||++++.|++|+|+++|+++|.++++++++.|+++++++|+|||++|+
T Consensus       326 ~A~~~L~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w~~eev~~~l~~im~~~~~~v~~~a~~~~~~~~~aA~~~a~  405 (419)
T 3aoe_E          326 EAEAYLLGKGALVVPDLLSGGGGLLASYLEWVQDLNMFFWSPEEVRERFETRVARVVDAVCRRAERGGLDLRMGALALAL  405 (419)
T ss_dssp             HHHHHHHHHTCEEECHHHHTCHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEECHHHHhCCCchhhHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCccC
Q 012750          444 NRVARATTLRGWEA  457 (457)
Q Consensus       444 ~rv~~a~~~rG~~~  457 (457)
                      +||+++|+.|||+.
T Consensus       406 ~rv~~a~~~~G~~p  419 (419)
T 3aoe_E          406 ERLDEATRLRGVYP  419 (419)
T ss_dssp             HHHHHHHHHHCCCC
T ss_pred             HHHHHHHHhcCCCC
Confidence            99999999999863

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=100.00  E-value=3.3e-122  Score=959.48  Aligned_cols=411  Identities=40%  Similarity=0.714  Sum_probs=383.6

Q ss_pred             cCCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHH
Q 012750           46 VMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDE  125 (457)
Q Consensus        46 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~e  125 (457)
                      ..++||+++.+|++|+++++++|+++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||++|++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~i~~~~p~~~d~G~~~~~~g~rv~hn~~~GP~kGGiR~~p~v~~~e   83 (421)
T 2yfq_A            4 TLNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGVRFHPNVNMDE   83 (421)
T ss_dssp             --CHHHHHHHHHHHHHHHHTCCHHHHHHHSSCSEEEEEEEEEEETTTEEEEEEEEEEECCCSSSSEEEEEEEESSCCHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCCHHHHhhccCCceEEEEEEEEEecCCCEEEEEEEEEEECCCCCCCcCCEEeeCCCCHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhh
Q 012750          126 VNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSK  205 (457)
Q Consensus       126 v~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~  205 (457)
                      |++||++|||||||++||||||||||++||+++|+.|+||++|+|+++|.+++||+.||||||+||++++|+||+++|++
T Consensus        84 v~~La~~mt~KnAl~~lP~GGgKggi~~dP~~~s~~el~r~~r~f~~~l~~~iG~~~dvpA~Dvgt~~~~m~~~~~~y~~  163 (421)
T 2yfq_A           84 VKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVK  163 (421)
T ss_dssp             HHHHHHHHHHHHHHHTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcceEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCC--CceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750          206 FHGHS--PAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       206 ~~g~~--~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      ..+++  |+++||||..+|||.+|.++|||||+++++++++++|.+++|+||+||||||||++++++|++.|+|||+|||
T Consensus       164 ~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD  243 (421)
T 2yfq_A          164 LNGERMDIGTFTGKPVAFGGSEGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAE  243 (421)
T ss_dssp             HTTTCCCGGGSCSCCGGGTCCTTCTTHHHHHHHHHHHHHHHHTTCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCB
T ss_pred             hhCCCCCCCEEecCchhcCCCCCCCcchHHHHHHHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            99974  8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-----CeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCC
Q 012750          284 IT-----GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAAN  358 (457)
Q Consensus       284 ~~-----G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN  358 (457)
                      ++     |++|||+|||+++|++++++++++.+|++++.++++++|+.+||||+|||++|+||.+||++++||+|+||||
T Consensus       244 ~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~~~~~~~~DIliP~A~~n~i~~~~A~~l~ak~VvEgAN  323 (421)
T 2yfq_A          244 WDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENVITGERAKTINAKLVCEAAN  323 (421)
T ss_dssp             CCSSSCSBCCBCSSCCCHHHHHHHHHHHCC---------------------CEEECSCSSCSCHHHHTTCCCSEEECCSS
T ss_pred             cCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCccchhcCCccEEEEcCCcCcCCcccHHHcCCeEEEeCCc
Confidence            99     9999999999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 012750          359 HPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGA  438 (457)
Q Consensus       359 ~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA  438 (457)
                      +|+||+|+++|++|||+|+||+++|+|||++|||||+||.++.+|++|+|+++|+++|.++++++++.|+++++++|+||
T Consensus       324 ~P~t~ea~~il~~~GI~~~Pd~~aNaGGV~vS~~E~~qN~~~~~w~~e~V~~~l~~~m~~~~~~v~~~A~~~g~~~~~aA  403 (421)
T 2yfq_A          324 GPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVADEYNVTLREAV  403 (421)
T ss_dssp             SCSCHHHHHHHHHHTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cccCHHHHHHHHHCCCEEEChHHHhCCCeEEEEEEEEecCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCcc
Q 012750          439 FTLGVNRVARATTLRGWE  456 (457)
Q Consensus       439 ~~~A~~rv~~a~~~rG~~  456 (457)
                      |++|++||+++|+.|||+
T Consensus       404 ~~~a~~rv~~a~~~~G~~  421 (421)
T 2yfq_A          404 YMYAIKSIDVAMKLRGWY  421 (421)
T ss_dssp             HHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            999999999999999985

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=100.00  E-value=4.2e-121  Score=959.48  Aligned_cols=411  Identities=41%  Similarity=0.643  Sum_probs=394.0

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCC------------------hHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeec
Q 012750           45 IVMNALAATSRNFRNAARILGLD------------------SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN  106 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~------------------~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~  106 (457)
                      ...+|++++..+|++|++++...                  ++++++|++|+|+++|+|||+||||++++|+|||||||+
T Consensus         5 ~~~~f~~~v~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~i~~~vp~~~D~G~~~v~~GyRvqhn~   84 (501)
T 3mw9_A            5 DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQ   84 (501)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHCCCTTCSSHHHHHHHHHHHHHSSCSEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhhhhHHHHHHHhCCCeEEEEEEEEEeCCCCEEEeeeEEEEECC
Confidence            46799999999999999998742                  789999999999999999999999999999999999999


Q ss_pred             cCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHh--hccCCCCcc
Q 012750          107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIH--DLIGIHTDI  184 (457)
Q Consensus       107 a~GPakGGiR~~~~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~--~~iG~~~di  184 (457)
                      ++||+||||||||++|++|+++||++|||||||++||||||||||++||+.+|..|++|++|+|+++|.  ++|||+.||
T Consensus        85 a~GP~kGGiR~hp~v~l~ev~~La~~MT~KnAl~~LP~GGgKGgi~~DPk~~s~~El~r~~r~f~~eL~~~~~IGp~~di  164 (501)
T 3mw9_A           85 HRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDV  164 (501)
T ss_dssp             SSSSEECCEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECSCGGGSCHHHHHHHHHHHHHHHHHTTSCBTTTEE
T ss_pred             CcCCCCCCeeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceEEecCCccCCHHHHHHHHHHHHHHHhhccCCCCCeeE
Confidence            999999999999999999999999999999999999999999999999999999999999999999998  599999999


Q ss_pred             cCCCCCCCHHHHHHHHHHhhhhhCCC----CceecCcccCCCCCCCCCcchHHHHHHHHHHHH------HHhCC--CCCC
Q 012750          185 PAPDMGTNAQTMAWILDEYSKFHGHS----PAVVTGKPIDLGGSLGREAATGRGVVYATEALL------AEHGQ--AIRD  252 (457)
Q Consensus       185 papDvgT~~~~m~wi~d~~~~~~g~~----~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l------~~~g~--~l~g  252 (457)
                      |||||||++++|+||+|+|+++.|..    ++++||||..+|||.+|.++|||||++++++++      +++|.  +++|
T Consensus       165 pApDvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eATg~GV~~~~~~~l~~~~~~~~~G~~~~l~g  244 (501)
T 3mw9_A          165 PAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD  244 (501)
T ss_dssp             CCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHTCHHHHHHTTCCSSSTT
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCchHHHHHHHHHHHHhhhHHHHHcCCCCCcCC
Confidence            99999999999999999999999873    689999999999999999999999999999855      46786  4899


Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      +||+||||||||+++|++|++.|+|||+|||++|++|||+|||+++|.+++++++++.+||+++.++ +++|+.+||||+
T Consensus       245 ~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~-~~il~~~~DIli  323 (501)
T 3mw9_A          245 KTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDCDILI  323 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC-SCGGGSCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec-cccccccceEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999885 489999999999


Q ss_pred             ccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccC-----------
Q 012750          333 PCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGF-----------  401 (457)
Q Consensus       333 PaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~-----------  401 (457)
                      |||++|+||++||++++||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||++++           
T Consensus       324 PcA~~n~I~~~na~~l~akiV~EgAN~p~T~eA~~iL~~rGIl~~PD~~aNAGGV~vSy~E~~qn~~~~~~grl~~~~e~  403 (501)
T 3mw9_A          324 PAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYER  403 (501)
T ss_dssp             ECSSSCCBCTTTGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHCSCTTTTTHHHHH
T ss_pred             eccccCccCHhHHHHcCceEEEeCCCCcCCHHHHHHHHHCCCEEEChHHhcCchHHhhHHHHHhccccccccccchhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999988           


Q ss_pred             ---CCCHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHhcC--CCHHHHHHH
Q 012750          402 ---MWEEDKVNNELRRY------------------------------------MIRAFHNIKGMCQTHN--CNLRMGAFT  440 (457)
Q Consensus       402 ---~w~~e~v~~~l~~~------------------------------------m~~~~~~v~~~a~~~~--~~~r~aA~~  440 (457)
                         +|++++|+++|+++                                    |.+++.++++++++++  +++|+|||+
T Consensus       404 ~~~~w~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ga~e~d~v~sgL~~~m~~a~~~v~~~a~~~~~~~~lRtAAy~  483 (501)
T 3mw9_A          404 DSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYV  483 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTTCCCCCCCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ccccccHHHHHHHHHhhhcccccccccCchHHHHHHHcCCcHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence               49999999888876                                    9999999999999988  699999999


Q ss_pred             HHHHHHHHHHHHcCcc
Q 012750          441 LGVNRVARATTLRGWE  456 (457)
Q Consensus       441 ~A~~rv~~a~~~rG~~  456 (457)
                      +|++||+++++.||+.
T Consensus       484 ~ai~rv~~a~~~~G~~  499 (501)
T 3mw9_A          484 NAIEKVFRVYNEAGVT  499 (501)
T ss_dssp             HHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHcCcc
Confidence            9999999999999974

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=100.00  E-value=9.4e-122  Score=954.89  Aligned_cols=412  Identities=40%  Similarity=0.673  Sum_probs=402.7

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHH
Q 012750           45 IVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPD  124 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~  124 (457)
                      +.+|+||.++.++++++.+++++|++++.|++|+|+++|++||+||||++++|+|||||||+++||+||||||||+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~r~i~v~~p~~~D~G~~~~~~G~rv~~~~~~GpakGG~R~~p~v~~~   81 (421)
T 1v9l_A            2 ERTGFLEYVLNYVKKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLA   81 (421)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCSEEEEEEEEEECSSSCEEEEEEEEEEEECSSSSEEEEEECCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCHHHHHhccCCceEEEEEEEEEecCCcEEEEEEEEeecCCcCCCccccEEecCCCCHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhh
Q 012750          125 EVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS  204 (457)
Q Consensus       125 ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~  204 (457)
                      ||++||++|||||||++||+|||||||++||+.+|..|++|++|+|+++|.+++||+.||||||+||++++|+||+++|+
T Consensus        82 ev~~La~~mt~KnAl~~lP~GG~KGgi~~dP~~~s~~e~~r~~r~f~~~l~~~iG~~~dvpA~D~Gt~~~~m~~~~~~y~  161 (421)
T 1v9l_A           82 DDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYS  161 (421)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCCEEEEEECSCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEEEECCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCC-CCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750          205 KFHGH-SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       205 ~~~g~-~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +++++ .|+++||||+.+|||.+|+++|||||+++++++++++|.+++|+||+||||||||++++++|++.|+|||+|||
T Consensus       162 ~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD  241 (421)
T 1v9l_A          162 KIKGYNVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSD  241 (421)
T ss_dssp             HHHTSCCGGGSCSCCSSSSCCGGGGGHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             HHhCCCCCCeEeccchhhCCCCCcccchHHHHHHHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEC
Confidence            99987 48999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeCCCCCCHHHHHHhHhhcCC--cccCCCC---eec-CCCcccccccceeeccccCCcccccccccccceEEEecC
Q 012750          284 ITGAVKNADGIDIHKLLAHKDKTGS--LKDFDGG---DSM-EPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAA  357 (457)
Q Consensus       284 ~~G~iynp~GLDi~~L~~~~~~~g~--~~~~~~~---~~i-~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgA  357 (457)
                      ++|++|||+|||+++|+++++++++  +.+|+++   +.+ +++++|+.+||||+|||++++||.+|+++++||+|+|||
T Consensus       242 ~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~~~~~Dil~P~A~~~~I~~~~a~~l~ak~V~EgA  321 (421)
T 1v9l_A          242 INGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGA  321 (421)
T ss_dssp             SSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGCCCSEEEECSCSSCBCTTTTTTCCCSEEECCS
T ss_pred             CCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhhcCCccEEEecCcCCccchhhHHHcCceEEEecC
Confidence            9999999999999999999998888  8889876   778 889999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHH
Q 012750          358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQ-THNCNLRM  436 (457)
Q Consensus       358 N~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~  436 (457)
                      |+|+||+|+++|++|||+|+||+++|||||++|||||+||++++.|++|+|+++|+++|.++++++++.|+ ++++++|+
T Consensus       322 N~p~t~~a~~~l~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w~~e~v~~~l~~im~~~~~~v~~~a~~~~~~~~~~  401 (421)
T 1v9l_A          322 NGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRD  401 (421)
T ss_dssp             SSCBCHHHHHHHHTTTCEEECHHHHSTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHH
T ss_pred             CCcCCHHHHHHHHHCCCEEeChHHhhCCCeeeeHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHHHcCcc
Q 012750          437 GAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       437 aA~~~A~~rv~~a~~~rG~~  456 (457)
                      |||++|++||+++|+.|||+
T Consensus       402 aA~~~a~~rv~~a~~~~G~~  421 (421)
T 1v9l_A          402 AAIVTALERIYNAMKIRGWI  421 (421)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999985

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=100.00  E-value=1.4e-120  Score=945.31  Aligned_cols=412  Identities=47%  Similarity=0.796  Sum_probs=401.2

Q ss_pred             cCCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHH
Q 012750           46 VMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDE  125 (457)
Q Consensus        46 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~e  125 (457)
                      ..++||+++.+|++|+++++++|++++.|++|+|+++|++||+||||++++|+|||||||+++||+||||||||+++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~r~i~~~~p~~~D~G~~~~~~g~rv~~~~~~GpakGGiR~~p~v~~~e   81 (415)
T 2tmg_A            2 EKSLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDE   81 (415)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCCHHHHHHHHSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTTSSEECCEEEESSCCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCHHHHHhcCCCCeEEEEEEEEEecCCcEEEEEEEEEEECCCCCCCCCcEEeeCCCCHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhh
Q 012750          126 VNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSK  205 (457)
Q Consensus       126 v~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~  205 (457)
                      |++||++|||||||++||+|||||||++||+++|..|++|++|+|+++|.+++||+.||||||+||++++|+||+++|++
T Consensus        82 v~~La~~mt~KnAl~~lP~GG~KGgi~~dP~~~s~~e~~r~~r~f~~~l~~~ig~~~dvpa~D~gt~~~~m~~~~~~y~~  161 (415)
T 2tmg_A           82 VKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEM  161 (415)
T ss_dssp             HHHHHHHHHHHHHHHTCSCCEEEEEEECCGGGSCHHHHHHHHHHHHHHTGGGCBTTTEECCBCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCC-CCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEC
Q 012750          206 FHGH-SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSD  283 (457)
Q Consensus       206 ~~g~-~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD  283 (457)
                      ++++ .|+++||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||++++++|.+ +|+|||+|+|
T Consensus       162 ~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD  241 (415)
T 2tmg_A          162 NVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSD  241 (415)
T ss_dssp             HHSSCCCCSCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhCCCCCCeEecCchhhCCCCCcCcchHHHHHHHHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEe
Confidence            9987 4899999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             CCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCH
Q 012750          284 ITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDP  363 (457)
Q Consensus       284 ~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~  363 (457)
                      ++|++|||+|||+++|++++++++++.+|++++.++++++|+.+||||+|||++|+||++|+++++||+|+||||+|+||
T Consensus       242 ~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~~~~DIliP~A~~n~i~~~~a~~l~ak~V~EgAN~p~t~  321 (415)
T 2tmg_A          242 SRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTP  321 (415)
T ss_dssp             SSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTTCSCSEEEECSSTTSBCHHHHTTCCCSEEECCSSSCBCH
T ss_pred             CCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhcCCCcEEEecCCcCccCcccHHHcCCeEEEeCCCcccCH
Confidence            99999999999999999999999999999998988889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 012750          364 EADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGV  443 (457)
Q Consensus       364 ~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~  443 (457)
                      +|+++|++|||+|+||+++|+|||++|||||+||.++.+|++|+|+++|+++|.++++++++.|+++++++|+|||++|+
T Consensus       322 ~a~~~l~~~Gi~~~PD~~aNaGGV~~s~~E~vqN~~~~~w~~e~v~~~l~~~m~~~~~~v~~~A~~~g~~~~~aA~~~a~  401 (415)
T 2tmg_A          322 EADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAI  401 (415)
T ss_dssp             HHHHHHHHTTCEEECHHHHTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEChHHHhCCCceEEEEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCccC
Q 012750          444 NRVARATTLRGWEA  457 (457)
Q Consensus       444 ~rv~~a~~~rG~~~  457 (457)
                      +||+++|+.|||+.
T Consensus       402 ~rv~~a~~~~G~~p  415 (415)
T 2tmg_A          402 DRVAYATKKRGIYP  415 (415)
T ss_dssp             HHHHHHHHHC----
T ss_pred             HHHHHHHHhcCCCC
Confidence            99999999999863

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=100.00  E-value=4.1e-121  Score=956.52  Aligned_cols=412  Identities=26%  Similarity=0.404  Sum_probs=399.6

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCCh---HHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCC
Q 012750           45 IVMNALAATSRNFRNAARILGLDS---KLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEV  121 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~  121 (457)
                      ...+|||+++.+|++++++++++|   +++++|++|+|++.|++||+||||++++|+|||||||+++||+||||||||++
T Consensus        42 ~~~e~~~~~~~~~~~~~~~~~~~p~~~~~le~l~~Per~i~~~vp~~~D~G~v~v~~Gyrvqhn~a~GPakGGiR~hp~v  121 (470)
T 2bma_A           42 NQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSV  121 (470)
T ss_dssp             TCHHHHHHHHHHHHHTHHHHHHCTTHHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECTTC
T ss_pred             CCchHHHHHHHHHHHHHHHhccChhhhHHHHHhcCCceEEEEEEEEEeCCCCEEEEEEEEEEECCCCCCCCCCeEeeCCC
Confidence            467899999999999999999999   79999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHH
Q 012750          122 DPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILD  201 (457)
Q Consensus       122 ~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d  201 (457)
                      |++|+++||++|||||||++||||||||||.+||+++|+.|+||++|+|+++|.+++||+.||||||+||++++|+||++
T Consensus       122 ~~~ev~~La~~mt~KnAl~~lP~GGgKGgi~~DPk~~S~~El~r~~r~f~~~L~~~iGp~~DvpApDvGt~~~em~~~~~  201 (470)
T 2bma_A          122 NLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYG  201 (470)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCSSCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECCSSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCCcceEEeCCCCcCCHHHHHHHHHHHHHHhhhccCCCCCccCCCCCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750          202 EYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       202 ~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  281 (457)
                      +|+++.+++.+++||||..+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|++.|+|||+|
T Consensus       202 ~y~~~~~~~~gvvTGKp~~~GGs~~r~~aTg~Gv~~~~~~~l~~~G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVav  281 (470)
T 2bma_A          202 QYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTL  281 (470)
T ss_dssp             HHHHHHCCCSCSSSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHTTTCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEE
T ss_pred             HHHHhcCCcccEEeCCCccCCCCCCccccchHHHHHHHHHHHHhccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence            99999998779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeeCCCCC---CHHHHHHhHhhc-CCcccCC----CCeecCCCcccccccceeeccccCCcccccccccc---cc
Q 012750          282 SDITGAVKNADGI---DIHKLLAHKDKT-GSLKDFD----GGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KA  350 (457)
Q Consensus       282 sD~~G~iynp~GL---Di~~L~~~~~~~-g~~~~~~----~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i---~a  350 (457)
                      ||++|++|||+||   |++.|+++++++ +++.+|+    +++.++++++|+.+||||+|||++|+||.+||+++   +|
T Consensus       282 sD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~~~~~~~~~~DI~iPcA~~~~I~~~na~~l~~~~a  361 (470)
T 2bma_A          282 SDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGC  361 (470)
T ss_dssp             EETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECSSCCTTSSCCSEEEECSSTTCBCSHHHHHHHHTTC
T ss_pred             EeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEecCcCeeecCccEEEeccccCcCCHHHHHHHHhcCc
Confidence            9999999999999   666777777775 6888874    67888889999999999999999999999999999   99


Q ss_pred             eEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012750          351 KFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTH  430 (457)
Q Consensus       351 kiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~  430 (457)
                      |+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||++++.|++|+|+++|+++|.++|+++++.++++
T Consensus       362 k~V~EgAN~p~T~eA~~~L~~rGIl~~PD~~aNAGGV~~S~~E~~qn~~~~~w~~eev~~~L~~im~~~~~~~~~~a~~~  441 (470)
T 2bma_A          362 ILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKY  441 (470)
T ss_dssp             CEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhhCCCceeeHHHhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC---CHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          431 NC---NLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       431 ~~---~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                      ++   ++|+|||+.|++||++||..|||+
T Consensus       442 ~~~~~~~r~~A~i~~~~rva~am~~~G~~  470 (470)
T 2bma_A          442 TKNKYDLQAGANIAGFLKVAESYIEQGCF  470 (470)
T ss_dssp             HSCSSCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            98   999999999999999999999985

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=100.00  E-value=6.5e-120  Score=944.05  Aligned_cols=422  Identities=30%  Similarity=0.452  Sum_probs=395.2

Q ss_pred             hhHHHHHHhh---hcCCHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeec
Q 012750           35 LLTCFESFRI---IVMNALAATSRNFRNAARILGLDSK-----LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN  106 (457)
Q Consensus        35 ~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~  106 (457)
                      +..+...+.+   ....|+|.+...++....++.-.|+     ++++|.+|+|+|+|++||+||||++++|+|||||||+
T Consensus        10 ~~~~~~~~~~~~~~~~ef~qa~~e~~~~l~~~~~~~p~y~~~~~~e~l~~PeR~i~~~vp~~~D~G~~~v~~GyRvqhn~   89 (450)
T 4fcc_A           10 LESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSS   89 (450)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHCGGGTSTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHhhCcCChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHhCCceEEEEEEEEEECCCcEEEEEEEEEEECC
Confidence            4444444443   2345777777778777788877776     5789999999999999999999999999999999999


Q ss_pred             cCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccC
Q 012750          107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPA  186 (457)
Q Consensus       107 a~GPakGGiR~~~~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipa  186 (457)
                      ++||+||||||||++|++|+++||++|||||||++||||||||||++||+++|+.|++|++|+|+++|.+++||+.|||+
T Consensus        90 alGP~kGG~Rfhp~v~l~ev~~La~~mT~KnAl~gLP~GGgKggi~~DPk~~s~~El~R~~~~f~~eL~~~iG~d~dvpa  169 (450)
T 4fcc_A           90 AIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPA  169 (450)
T ss_dssp             SSSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTSSCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEE
T ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHHHHHHHHcCCCCCCCceEEecCCCcCCHHHHHHHHHHHHHHhhheecCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHH
Q 012750          187 PDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSW  266 (457)
Q Consensus       187 pDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~  266 (457)
                      ||+||++++|+||+++|+++.+.+++++||||+.+|||.+|+++|||||+++++++++++|.+++|+||+||||||||++
T Consensus       170 ~Dig~~~~em~~~~~~y~~~~~~~~~v~TGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~~~~l~Gk~vaVQG~GnVG~~  249 (450)
T 4fcc_A          170 GDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQY  249 (450)
T ss_dssp             CBTTBCHHHHHHHHHHHHHHHTCCSCCCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEEECCSHHHHH
T ss_pred             cceeecchhhhhhhhhhhhccCCCceeecCCCcccCCCCCCCCceeeeHHHHHHHHHHHcCCCcCCCEEEEeCCChHHHH
Confidence            99999999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh----cCCcccCC---CCeecCCCcccccccceeeccccCCc
Q 012750          267 AARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK----TGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGV  339 (457)
Q Consensus       267 ~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~----~g~~~~~~---~~~~i~~~ell~~~~DIliPaA~~~~  339 (457)
                      +|++|++.|+|||+++|++|++|||+|||+++|.++++.    ++.+.+|+   +++.++++++|+.+||||+|||++|+
T Consensus       250 aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~~~~i~~~~~DI~iPcAl~~~  329 (450)
T 4fcc_A          250 AIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNE  329 (450)
T ss_dssp             HHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEETCCGGGSCCSEEEECSCTTC
T ss_pred             HHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEecCcccccCCccEEeecccccc
Confidence            999999999999999999999999999999999887653    34455543   67788999999999999999999999


Q ss_pred             cccccccccc---ceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHH
Q 012750          340 LKRENAADVK---AKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYM  416 (457)
Q Consensus       340 It~~na~~i~---akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m  416 (457)
                      ||++||++++   ||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||.++++|++|+|+++|+++|
T Consensus       330 I~~~~a~~L~a~g~k~IaEgAN~p~t~eA~~iL~~rGIl~~PD~~aNAGGVi~S~~E~~qn~~~~~w~~eeV~~kL~~im  409 (450)
T 4fcc_A          330 LDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIM  409 (450)
T ss_dssp             BCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCceEEecCCCCCCCHHHHHHHHHCCCEEEChHHhcCccHhhhHHHHhhhcccCCCCHHHHHHHHHHHH
Confidence            9999999997   5999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          417 IRAFHNIKGMCQT-HNCNLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       417 ~~~~~~v~~~a~~-~~~~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                      .++++++++.+++ ..+++|+|||+.|++||++||..|||+
T Consensus       410 ~~~~~~~~~~~~e~~~~~~~~aA~i~a~~rVa~Am~~~G~v  450 (450)
T 4fcc_A          410 LDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI  450 (450)
T ss_dssp             HHHHHHHHHTSCSSSSCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999998865 568999999999999999999999985

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=100.00  E-value=5.8e-118  Score=931.55  Aligned_cols=412  Identities=29%  Similarity=0.487  Sum_probs=400.5

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeec
Q 012750           45 IVMNALAATSRNFRNAARILGLDSK-----LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP  119 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~  119 (457)
                      ...+|||+++.+|++++++++++|+     ++++|++|+|++.|++||+||||++++|+|||||||+++||+||||||||
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Per~i~~~vp~~~d~G~~~v~~G~rv~hn~~~GPakGGlR~~p   96 (449)
T 1bgv_A           17 DEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAP   96 (449)
T ss_dssp             TCHHHHHHHHHHHHTTHHHHHTCHHHHHTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECT
T ss_pred             CCccHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEeCCCCEEEEeEEEEEEcCCcCCCCCCeeecC
Confidence            5678999999999999999999999     99999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHH
Q 012750          120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI  199 (457)
Q Consensus       120 ~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi  199 (457)
                      ++|++||++||++|||||||++||+|||||||++||+++|+.|++|++|+|+++|.+++||+.||||||+||++++|+||
T Consensus        97 ~v~~~ev~~La~~mt~KnAl~~lP~GGgKGGi~~dP~~~s~~e~~r~~r~f~~~L~~~ig~~~dvpA~DvGt~~~~m~~~  176 (449)
T 1bgv_A           97 SVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYM  176 (449)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTSSSCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCCccEEEECCCccCCHHHHHHHHHHHHHHhhheeCCCCcCCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhCC-CCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEE
Q 012750          200 LDEYSKFHGH-SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKV  278 (457)
Q Consensus       200 ~d~~~~~~g~-~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakV  278 (457)
                      +++|+++.++ .++++||||..+|||.+|+++|||||+++++++++++|.+++|+||+||||||||++++++|++.|+||
T Consensus       177 ~~~y~~~~~~~~~g~~tGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~G~~l~g~~v~VqG~GnVG~~~a~~L~~~Gakv  256 (449)
T 1bgv_A          177 YGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKA  256 (449)
T ss_dssp             HHHHHHHHTSCCGGGSSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHhcCCCcCceEecCCcccCCCCCcccchhHHHHHHHHHHHHHccCCcCCCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence            9999999886 479999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCeeeCCCCC----CHHHHHHhHhhc-CCcccCCC---CeecCCCcccccccceeeccccCCcccccccccccc
Q 012750          279 IAVSDITGAVKNADGI----DIHKLLAHKDKT-GSLKDFDG---GDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA  350 (457)
Q Consensus       279 VaVsD~~G~iynp~GL----Di~~L~~~~~~~-g~~~~~~~---~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~a  350 (457)
                      |+|||++|++|||+||    |+++|+++++++ +++.+|+.   ++.++++++|+.+||||+|||++++||.+|+++++|
T Consensus       257 VavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~~~e~~~~~~Dil~P~A~~~~I~~~na~~l~a  336 (449)
T 1bgv_A          257 VTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVA  336 (449)
T ss_dssp             EEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGGGSCCSEEECCSCTTCBCHHHHHHHHH
T ss_pred             EEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEeCchhhhcCCcceeeccccccccchhhHHHHHh
Confidence            9999999999999999    788899998886 68988875   788888899999999999999999999999999997


Q ss_pred             ---eEEEecCCCCCCHHHHHHHHhC-CCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 012750          351 ---KFIIEAANHPTDPEADEILSKR-GVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGM  426 (457)
Q Consensus       351 ---kiIvEgAN~p~t~~a~~iL~~r-GI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~  426 (457)
                         |+|+||||+|+||+|+++|++| ||+|+||+++|||||++|||||+||++...|++|+|+++|+++|.++++.+++.
T Consensus       337 ~g~kiV~EgAN~p~T~eA~~~l~~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w~~eev~~~L~~~m~~~~~~v~~~  416 (449)
T 1bgv_A          337 NNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAA  416 (449)
T ss_dssp             TTCCEEECCSSSCBCHHHHHHHHHCTTCEEECHHHHTTHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEeCCCCcCCHHHHHHHHHcCCEEEEChHHhcCCCceeehhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence               9999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCC--CHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          427 CQTHNC--NLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       427 a~~~~~--~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                      ++++++  ++|+|||+.|++||+++|+.|||+
T Consensus       417 a~~~~~~~~~~~~A~i~~~~rv~~a~~~~G~~  448 (449)
T 1bgv_A          417 AERYGLGYNLVAGANIVGFQKIADAMMAQGIA  448 (449)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HHHhCCCCCHHHHhhHHHHHHHHHHHHhcCcc
Confidence            999999  999999999999999999999985

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=100.00  E-value=5e-107  Score=846.90  Aligned_cols=412  Identities=44%  Similarity=0.753  Sum_probs=401.3

Q ss_pred             cCCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHH
Q 012750           46 VMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDE  125 (457)
Q Consensus        46 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~e  125 (457)
                      ..++||+++.+|++++++++++|++++.|++|+|+++|++||+||||++++|+|||||||+++||+||||||||+++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~G~~~~~~g~rv~~~~~~Gp~kGG~R~~~~~~~~e   81 (419)
T 1gtm_A            2 EADPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLST   81 (419)
T ss_dssp             -CTHHHHHHHHHHHHGGGSCCCHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTTSSEECCEEECTTCCHHH
T ss_pred             CccHHHHHHHHHHHHHHHhCCChhhhhcCCCCceEEEEEEEEEecCCCEEEEEEEEEEECCCCCCCcCCEEeeCCCCHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhh
Q 012750          126 VNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSK  205 (457)
Q Consensus       126 v~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~  205 (457)
                      |++||++|||||||++||+|||||||++||+++|+.|+||++|+|+++|.+++||+.||||||+||++++|+||+++|++
T Consensus        82 v~~La~~mt~Knal~~lp~GG~Kggi~~dP~~~s~~e~~~~~r~f~~~l~~~~g~~~dv~a~D~gt~~~~m~~~~~~y~~  161 (419)
T 1gtm_A           82 VKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYET  161 (419)
T ss_dssp             HHHHHHHHHHHHHHTTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCcEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCC-C--ceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCeEEEEecChHHHHHHHHHHH-CCCEEEE
Q 012750          206 FHGHS-P--AVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQA-IRDLTFVIQGFGNVGSWAARLIHE-RGGKVIA  280 (457)
Q Consensus       206 ~~g~~-~--~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~-l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVa  280 (457)
                      +.++. |  +++||||..+|||.+|+++|||||+++++++++++|.+ ++|+||.||||||||+.+|++|.+ .|++|++
T Consensus       162 ~~~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~  241 (419)
T 1gtm_A          162 ISRRKTPAFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA  241 (419)
T ss_dssp             HHTTSSCGGGGCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCCCccceEecCcchhCCCCCCCcchhhHHHHHHHHHHHHhCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEE
Confidence            99974 7  89999999999999999999999999999999999999 999999999999999999999999 9999999


Q ss_pred             EECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCC
Q 012750          281 VSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHP  360 (457)
Q Consensus       281 VsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p  360 (457)
                      ++|++|.+||++|+|+++|+++++..+++..||..+.+++++++..+||||||||.+++|++++++.++|+.|+|+||.|
T Consensus       242 ~sD~~g~~~~~~gvdl~~L~~~~d~~~~l~~l~~t~~i~~~~l~~mk~dilIn~ArG~~Vde~a~~aL~~~~I~~aAneP  321 (419)
T 1gtm_A          242 VSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGP  321 (419)
T ss_dssp             EECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSCCSEEEECSCSCCBCTTGGGGCCCSEEECCSSSC
T ss_pred             EeCCCccccCccCCCHHHHHHHHHhcCEeecCccCeeeCHHHHHhCCCCEEEECCCcccCCHHHHHHhcCCEEEEeeCCC
Confidence            99999999999999999999998877888888877778888899999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 012750          361 TDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFT  440 (457)
Q Consensus       361 ~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~  440 (457)
                      +||+++.+|..+||++.||+++|+|||++||+||+||+++.+|+.+++.++|+++|.+++.++++.|+++++++|+|||+
T Consensus       322 ~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~~a~~~~~~~~~aA~~  401 (419)
T 1gtm_A          322 VTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYV  401 (419)
T ss_dssp             BCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CCcchHHHHhcCCEEEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCccC
Q 012750          441 LGVNRVARATTLRGWEA  457 (457)
Q Consensus       441 ~A~~rv~~a~~~rG~~~  457 (457)
                      +|++||+++|+.|||+.
T Consensus       402 ~a~~rv~~a~~~~g~~~  418 (419)
T 1gtm_A          402 VAVQRVYQAMLDRGWVK  418 (419)
T ss_dssp             HHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999864

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=100.00  E-value=5.1e-88  Score=689.72  Aligned_cols=336  Identities=28%  Similarity=0.404  Sum_probs=310.9

Q ss_pred             cCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHH----HHHHHHHHHHHHHhhcCCCCCCcceE
Q 012750           75 LIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPD----EVNALAQLMTWKTAVADIPYGGAKGG  150 (457)
Q Consensus        75 ~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~----ev~~LA~~Mt~K~Al~~lP~GGaKGg  150 (457)
                      ..|++++.++-|.       ..|+|||||||+++||+||||||||++|.+    |+++||++|||||||++|||||||||
T Consensus         8 ~~~e~v~~~~d~~-------~~~~~~~~~h~~~~GP~kGG~R~~p~v~~~~~~~ev~~La~~mt~K~al~~lp~GG~Kgg   80 (355)
T 1c1d_A            8 WDGEMTVTRFDAM-------TGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSV   80 (355)
T ss_dssp             CCSSEEEEEEETT-------TTEEEEEEEEECSSSSEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEE
T ss_pred             CCccEEEEEEccc-------cceEEEEEEECCCCCCCCCcEEecCCCChHHHHHHHHHHHHHHHHHHHhhCCCCCCceee
Confidence            4699999988664       468999999999999999999999999866    89999999999999999999999999


Q ss_pred             EeC-CCCC-CCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCC
Q 012750          151 IGC-SPKE-LSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRE  228 (457)
Q Consensus       151 I~~-dP~~-~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~  228 (457)
                      |.+ ||+. +|..|+|+++|+|.++|.+++|+  ||||||+||++++|+||+++|+        ++||||..+|||.+|.
T Consensus        81 i~~~dP~~~~s~~~~e~~~r~~~~~~~~l~g~--~ipa~D~gt~~~~m~~~~~~~~--------~~tGk~~~~GGs~~~~  150 (355)
T 1c1d_A           81 IALPAPRHSIDPSTWARILRIHAENIDKLSGN--YWTGPDVNTNSADMDTLNDTTE--------FVFGRSLERGGAGSSA  150 (355)
T ss_dssp             EECSSCGGGCCHHHHHHHHHHHHHHHHHTTTS--EEEEECTTCCHHHHHHHHHHCS--------CBCCCCGGGTSCCCCH
T ss_pred             EeccCcccccChhhHHHHHHHHHHHHHHhcCC--cccCCCCCCCHHHHHHHHHhcC--------eeeccchhhCCCCCch
Confidence            999 9999 99999999999999999999997  5999999999999999999987        6899999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750          229 AATGRGVVYATEALLAEHGQ-AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG  307 (457)
Q Consensus       229 ~aTg~Gv~~~~~~~l~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g  307 (457)
                      ++|||||++++++++++.|. +++|+||+||||||||+++|++|.+.|+||| ++|++          .+. .++.++  
T Consensus       151 ~aTg~Gv~~~~~~~~~~~G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVv-vsD~~----------~~~-~~~a~~--  216 (355)
T 1c1d_A          151 FTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLL-VADTD----------TER-VAHAVA--  216 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHH-HHHHHH--
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EEeCC----------ccH-HHHHHh--
Confidence            99999999999999999998 7999999999999999999999999999999 99974          333 333332  


Q ss_pred             CcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCC-HHHHHHHHhCCCeEecccccccCC
Q 012750          308 SLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTD-PEADEILSKRGVTILPDIYANSGG  386 (457)
Q Consensus       308 ~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t-~~a~~iL~~rGI~viPD~laNaGG  386 (457)
                          | +++.++++++|..+||||+||+++++||++|++.++|++|+|+||+|+| ++|.++|+++||+++||+++|+||
T Consensus       217 ----~-ga~~v~~~ell~~~~DIliP~A~~~~I~~~~~~~lk~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd~~aNaGG  291 (355)
T 1c1d_A          217 ----L-GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG  291 (355)
T ss_dssp             ----T-TCEECCGGGGGGCCCSEEEECSCSCCBCHHHHHHCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCHHHHTTHH
T ss_pred             ----c-CCEEeChHHhhcCccceecHhHHHhhcCHHHHhhCCCCEEEECCCCCCCCHHHHHHHHhCCEEEECCeEEcCCC
Confidence                2 4566777899999999999999999999999999999999999999988 499999999999999999999999


Q ss_pred             ceehh-HHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHc
Q 012750          387 VTVSY-FEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLR  453 (457)
Q Consensus       387 Vi~S~-~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~~~r  453 (457)
                      |++|| |||      +.|++|+|+++|+++| +++++|++.|+++++++|+|||.+|++||+++|..+
T Consensus       292 V~~s~~~E~------~~w~~e~v~~~l~~i~-~~~~~i~~~~~~~~~~~~~aA~~~a~~rv~~a~~~~  352 (355)
T 1c1d_A          292 AIHLVGREV------LGWSESVVHERAVAIG-DTLNQVFEISDNDGVTPDEAARTLAGRRAREASTTT  352 (355)
T ss_dssp             HHHHHHHHT------TCCCHHHHHHHHHTHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTC---
T ss_pred             eeeeeeehh------cCCCHHHHHHHHHHHH-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhc
Confidence            99999 999      5799999999999987 899999999999999999999999999999998765

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=100.00  E-value=3.5e-84  Score=664.15  Aligned_cols=337  Identities=26%  Similarity=0.363  Sum_probs=312.0

Q ss_pred             cCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHH----HHHHHHHHHHHHHhhcCCCCCCcceE
Q 012750           75 LIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPD----EVNALAQLMTWKTAVADIPYGGAKGG  150 (457)
Q Consensus        75 ~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~----ev~~LA~~Mt~K~Al~~lP~GGaKGg  150 (457)
                      ..|++++.++-|.       ..|+|||||||+++||+||||||||++|.+    |+++||++|||||||++|||||||||
T Consensus        10 ~~~e~v~~~~d~~-------~~~~~~~~~h~~~~Gp~kGG~R~~p~v~~~~~~~e~~~La~~mt~K~al~~lp~GG~Kgg   82 (364)
T 1leh_A           10 YDYEQLVFCQDEA-------SGLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTV   82 (364)
T ss_dssp             HTCCEEEEEEETT-------TTEEEEEEEEECSSSSEECCEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEE
T ss_pred             cCCeEEEEEEccC-------cceEEEEEEECCCCCCCCCcEEecCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcCcceE
Confidence            3599999988543       469999999999999999999999999876    89999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcc
Q 012750          151 IGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAA  230 (457)
Q Consensus       151 I~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~a  230 (457)
                      |.+||+.++.   |+++|+|.+++.+++|+  ||||||+||++++|+||+++|+        ++||||+.+|||.+|.++
T Consensus        83 i~~dP~~~~~---~~~~r~~~~~~~~l~g~--~i~A~D~Gt~~~~m~~l~~~~~--------~~tGK~~~~ggs~~~~~a  149 (364)
T 1leh_A           83 IIGDPFADKN---EDMFRALGRFIQGLNGR--YITAEDVGTTVDDMDLIHQETD--------YVTGISPAFGSSGNPSPV  149 (364)
T ss_dssp             EESCTTTTCC---HHHHHHHHHHHHTTTTS--EEBCBCTTCCHHHHHHHHTTCS--------CBCSCCHHHHHHCCHHHH
T ss_pred             EeCCCCCCCH---HHHHHHHHHHHHHhcCc--eEEcccCCCCHHHHHHHHHhcc--------hhcccccccCCCCCcccc
Confidence            9999998764   67999999999999997  5999999999999999999986        689999999999999999


Q ss_pred             hHHHHHHHHHHHHHH-hCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750          231 TGRGVVYATEALLAE-HGQ-AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS  308 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~-~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~  308 (457)
                      ||+||++++++++++ +|. +++|++|+|||+||||+.+|+.|.+.|++|+ ++|.          |.+.+.++.++.  
T Consensus       150 Tg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~~~GakVv-v~D~----------~~~~l~~~a~~~--  216 (364)
T 1leh_A          150 TAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLV-VTDV----------NKAAVSAAVAEE--  216 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS----------CHHHHHHHHHHH--
T ss_pred             hhhHHHHHHHHHHHhhccccCCCcCEEEEECchHHHHHHHHHHHHCCCEEE-EEcC----------CHHHHHHHHHHc--
Confidence            999999999999997 587 7999999999999999999999999999999 8985          567777776652  


Q ss_pred             cccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCC-HHHHHHHHhCCCeEecccccccCCc
Q 012750          309 LKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTD-PEADEILSKRGVTILPDIYANSGGV  387 (457)
Q Consensus       309 ~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t-~~a~~iL~~rGI~viPD~laNaGGV  387 (457)
                           +++.++.++++..+|||++||+.+++||.+|++.++|++|+|+||+|+| +++.++|+++||.++||+++|+|||
T Consensus       217 -----ga~~v~~~~ll~~~~DIvip~a~~~~I~~~~~~~lg~~iV~e~An~p~t~~ea~~~L~~~Gi~~~Pd~~~NaGGv  291 (364)
T 1leh_A          217 -----GADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGV  291 (364)
T ss_dssp             -----CCEECCGGGTTTCCCSEEEECSCSCCBSTTHHHHCCCSEECCSCSCCBSSHHHHHHHHHHTCEECCHHHHTTHHH
T ss_pred             -----CCEEEChHHHhccCCcEeeccchHHHhCHHHHHhCCCcEEEeCCCCCcccHHHHHHHHhCCCEEecceeecCCce
Confidence                 3456677888999999999999999999999999999999999999987 5999999999999999999999999


Q ss_pred             eehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          388 TVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       388 i~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                      ++|||||      +.|++|+|+++|+++| +++++|++.++++++++|+|||.+|++||+++++.|||.
T Consensus       292 ~~s~~E~------~~~~~e~v~~~l~~i~-~~~~~i~~~~~~~~~~~~~aA~~~a~~ri~~a~~~~~~~  353 (364)
T 1leh_A          292 INVADEL------YGYNRTRAMKRVDGIY-DSIEKIFAISKRDGVPSYVAADRMAEERIAKVAKARSQF  353 (364)
T ss_dssp             HHHHHGG------GCCCHHHHHHHHTHHH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             EEEEEee------cCCCHHHHHHHHHHHH-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999      5799999999999976 899999999999999999999999999999999999974

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=97.85  E-value=2.6e-05  Score=78.45  Aligned_cols=171  Identities=18%  Similarity=0.219  Sum_probs=102.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC-------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHER-------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL  323 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~-------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~el  323 (457)
                      +..+|+|.|+|+||+.+++.|.+.       +.+|++|+|++...++++ +|++.+.+.+++.+.+..+    .++.+++
T Consensus         3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~-idl~~~~~~~~~~g~~~~~----~~d~~e~   77 (325)
T 3ing_A            3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRN-LDISSIISNKEKTGRISDR----AFSGPED   77 (325)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSS-CCHHHHHHHHHHHSCSCSS----BCCSGGG
T ss_pred             ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccc-cCHHHHHHHhhhcCCCCcc----cCCHHHH
Confidence            456899999999999999999763       679999999999999999 9998887766655544322    1245666


Q ss_pred             c-ccccceeeccccCCccc---cccccc-c--cceEEEecCCC-CCCHHHH---HHHHhCCCeEecccccccCCc---ee
Q 012750          324 L-AHECDVLIPCALGGVLK---RENAAD-V--KAKFIIEAANH-PTDPEAD---EILSKRGVTILPDIYANSGGV---TV  389 (457)
Q Consensus       324 l-~~~~DIliPaA~~~~It---~~na~~-i--~akiIvEgAN~-p~t~~a~---~iL~~rGI~viPD~laNaGGV---i~  389 (457)
                      + +.++||++.|+..+...   .+.+.. +  +..+|++  |- +++.+.+   +.-+++|+.+.=.  ++-||-   +.
T Consensus        78 l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta--NK~~la~~~~eL~~lA~~~g~~~~~E--a~vg~giPii~  153 (325)
T 3ing_A           78 LMGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA--NKSGLANKWHDIMDSANQNSKYIRYE--ATVAGGVPLFS  153 (325)
T ss_dssp             GTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC--CCHHHHHHHHHHHHHHHHHTCCEECG--GGSSTTSCCHH
T ss_pred             hcCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEc--CchhHHHHHHHHHHHHHHcCCeEEEE--eeecccCHHHH
Confidence            6 45899999998654221   122322 2  3345543  22 2333333   3445778865432  232222   22


Q ss_pred             hhHHHhhhc-----cc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          390 SYFEWVQNI-----QG-FMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       390 S~~E~~qn~-----~~-~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                      .-.|++..-     .+ +.=+-..+..++++  ...|.+++..|++.|.
T Consensus       154 ~l~~~l~g~~I~~i~Gi~nGT~nyil~~m~~--g~~f~~~l~~Aq~~Gy  200 (325)
T 3ing_A          154 VLDYSILPSKVKRFRGIVSSTINYVIRNMAN--GRSLRDVVDDAIKKGI  200 (325)
T ss_dssp             HHHHTCTTCCEEEEEEECCHHHHHHHHHHHT--TCCHHHHHHHHHHHTC
T ss_pred             HHHHHhhCCCeeEEEEEEEeeeeEEeecccC--CCCHHHHHHHHHHcCC
Confidence            222222110     00 00022334444432  4578999999999886

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=97.81  E-value=0.00012  Score=75.14  Aligned_cols=156  Identities=19%  Similarity=0.280  Sum_probs=104.1

Q ss_pred             ccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChH
Q 012750          184 IPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNV  263 (457)
Q Consensus       184 ipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnV  263 (457)
                      |.....|++.-++++..+.     |-   .++.-|    |  ....+++-.++..+-.+.+++|.++.|++|.|+|+|++
T Consensus        62 I~~~~~G~D~iD~~~~~~~-----gI---~v~n~p----g--~~~~~vAE~~l~~lL~l~r~~~~~l~g~tvGIIGlG~I  127 (380)
T 2o4c_A           62 VGTCTIGTDHLDLDYFAEA-----GI---AWSSAP----G--CNARGVVDYVLGCLLAMAEVRGADLAERTYGVVGAGQV  127 (380)
T ss_dssp             EEECSSCSTTBCHHHHHHH-----TC---EEECCT----T--TTHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEECCSHH
T ss_pred             EEEcCcccchhhHHHHHhC-----CC---EEEeCC----C--cChHHHHHHHHHHHHHHHhhhhcccCCCEEEEEeCCHH
Confidence            5556677776667666432     21   334333    1  12457777888888888888899999999999999999


Q ss_pred             HHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeecccc-------
Q 012750          264 GSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCAL-------  336 (457)
Q Consensus       264 G~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~-------  336 (457)
                      |+.+|+.|...|.+|++ .|.       .   .+.     ...       +....+.++++. +|||++.|..       
T Consensus       128 G~~vA~~l~~~G~~V~~-~d~-------~---~~~-----~~~-------g~~~~~l~ell~-~aDvV~l~~Plt~~g~~  183 (380)
T 2o4c_A          128 GGRLVEVLRGLGWKVLV-CDP-------P---RQA-----REP-------DGEFVSLERLLA-EADVISLHTPLNRDGEH  183 (380)
T ss_dssp             HHHHHHHHHHTTCEEEE-ECH-------H---HHH-----HST-------TSCCCCHHHHHH-HCSEEEECCCCCSSSSS
T ss_pred             HHHHHHHHHHCCCEEEE-EcC-------C---hhh-----hcc-------CcccCCHHHHHH-hCCEEEEeccCcccccc
Confidence            99999999999999984 332       1   110     010       111223345554 8999998873       


Q ss_pred             --CCcccccccccccc-eEEEecCCCCC-CHH-HHHHHHhCCCeEe
Q 012750          337 --GGVLKRENAADVKA-KFIIEAANHPT-DPE-ADEILSKRGVTIL  377 (457)
Q Consensus       337 --~~~It~~na~~i~a-kiIvEgAN~p~-t~~-a~~iL~~rGI~vi  377 (457)
                        .+.|+++....++. .+++.-+.+++ +.+ -.+.|.+++|.-+
T Consensus       184 ~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A  229 (380)
T 2o4c_A          184 PTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEV  229 (380)
T ss_dssp             CCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEE
T ss_pred             chhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceE
Confidence              34566656666654 68899998884 443 4568888887654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.68  E-value=0.00073  Score=65.01  Aligned_cols=134  Identities=16%  Similarity=0.168  Sum_probs=83.9

Q ss_pred             HHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecC
Q 012750          240 EALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME  319 (457)
Q Consensus       240 ~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~  319 (457)
                      ...+++.+.+++| ++.|+|.|++|+.+++.|.+.|++|+ |+|.+          .+...+..++.+.       ..-+
T Consensus       105 ~~~l~~~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~-v~~r~----------~~~~~~l~~~~~~-------~~~~  165 (263)
T 2d5c_A          105 LEALKAGGIPLKG-PALVLGAGGAGRAVAFALREAGLEVW-VWNRT----------PQRALALAEEFGL-------RAVP  165 (263)
T ss_dssp             HHHHHHTTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------HHHHHHHHHHHTC-------EECC
T ss_pred             HHHHHHhCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHHhcc-------chhh
Confidence            3345566888999 99999999999999999999998654 77763          3344443333221       1112


Q ss_pred             CCcccccccceeeccccCCccc--cc--cccccc-ceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHH
Q 012750          320 PSELLAHECDVLIPCALGGVLK--RE--NAADVK-AKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEW  394 (457)
Q Consensus       320 ~~ell~~~~DIliPaA~~~~It--~~--na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~  394 (457)
                      .+++  .++||+|-|...+...  ..  ..+.++ -++|++-+.+|....-.+.++++|+.++|..-.-.+..+.++..|
T Consensus       166 ~~~~--~~~Divi~~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~t~l~~~a~~~g~~~v~g~~mlv~q~~~a~~~w  243 (263)
T 2d5c_A          166 LEKA--REARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWTRFLREAKAKGLKVQTGLPMLAWQGALAFRLW  243 (263)
T ss_dssp             GGGG--GGCSEEEECSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSSCHHHHHHHHTTCEEECSHHHHHHHHHHHHHHH
T ss_pred             Hhhc--cCCCEEEEccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCcccHHHHHHHHCcCEEECcHHHHHHHHHHHHHHH
Confidence            2344  6899999998655321  01  123343 368889887775224556778899998876433333333344444

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.66  E-value=0.00016  Score=75.74  Aligned_cols=97  Identities=14%  Similarity=0.219  Sum_probs=67.9

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc
Q 012750          245 EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL  324 (457)
Q Consensus       245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell  324 (457)
                      ..+..+.|++|.|+|+|+||+.+|+.|...|++|+ ++|.+          +....+....        +.+.++.++++
T Consensus       240 atg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Vi-v~d~d----------p~~a~~A~~~--------G~~vv~LeElL  300 (464)
T 3n58_A          240 GTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVK-VTEVD----------PICALQAAMD--------GFEVVTLDDAA  300 (464)
T ss_dssp             HHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHT--------TCEECCHHHHG
T ss_pred             hcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEE-EEeCC----------cchhhHHHhc--------CceeccHHHHH
Confidence            56888999999999999999999999999999998 66652          2222221111        22333445555


Q ss_pred             ccccceeecccc-CCccccccccccc-ceEEEecCCCCC
Q 012750          325 AHECDVLIPCAL-GGVLKRENAADVK-AKFIIEAANHPT  361 (457)
Q Consensus       325 ~~~~DIliPaA~-~~~It~~na~~i~-akiIvEgAN~p~  361 (457)
                      . .+||++.|.. .+.|+.+....+| --+|+.-+.+..
T Consensus       301 ~-~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgdv  338 (464)
T 3n58_A          301 S-TADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDN  338 (464)
T ss_dssp             G-GCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSSTT
T ss_pred             h-hCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCCc
Confidence            4 7999999874 3577877777765 356677666653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.58  E-value=0.00052  Score=71.64  Aligned_cols=98  Identities=15%  Similarity=0.285  Sum_probs=70.2

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcc
Q 012750          244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL  323 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~el  323 (457)
                      +..+..+.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+          ..........        +.+..+.+++
T Consensus       203 ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Vi-v~D~~----------p~~a~~A~~~--------G~~~~sL~ea  263 (436)
T 3h9u_A          203 RATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVV-VTEVD----------PINALQAAME--------GYQVLLVEDV  263 (436)
T ss_dssp             HHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHT--------TCEECCHHHH
T ss_pred             HhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EECCC----------hhhhHHHHHh--------CCeecCHHHH
Confidence            356888999999999999999999999999999988 56652          2222222221        1222344455


Q ss_pred             cccccceeecccc-CCcccccccccccc-eEEEecCCCCC
Q 012750          324 LAHECDVLIPCAL-GGVLKRENAADVKA-KFIIEAANHPT  361 (457)
Q Consensus       324 l~~~~DIliPaA~-~~~It~~na~~i~a-kiIvEgAN~p~  361 (457)
                      +. .+||++.+.- .+.|+.+....++- .+|+.-++++.
T Consensus       264 l~-~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg~v  302 (436)
T 3h9u_A          264 VE-EAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDT  302 (436)
T ss_dssp             TT-TCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSSGG
T ss_pred             Hh-hCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCCCC
Confidence            54 7999998764 36888888888753 67888888763

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.56  E-value=0.00035  Score=68.51  Aligned_cols=115  Identities=23%  Similarity=0.321  Sum_probs=75.6

Q ss_pred             HHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecC--
Q 012750          242 LLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME--  319 (457)
Q Consensus       242 ~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~--  319 (457)
                      ++...+.++.|++|.|+|+|++|+.+++.|...|++|+ +.|.+          .+.+.... +.+       .+.++  
T Consensus       145 ~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~-~~dr~----------~~~~~~~~-~~g-------~~~~~~~  205 (293)
T 3d4o_A          145 AIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVK-VGARE----------SDLLARIA-EMG-------MEPFHIS  205 (293)
T ss_dssp             HHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESS----------HHHHHHHH-HTT-------SEEEEGG
T ss_pred             HHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEE-EEECC----------HHHHHHHH-HCC-------CeecChh
Confidence            34456788999999999999999999999999999987 45543          22222211 111       12221  


Q ss_pred             -CCcccccccceeeccccCCccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCCeEe
Q 012750          320 -PSELLAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPTDPEADEILSKRGVTIL  377 (457)
Q Consensus       320 -~~ell~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~vi  377 (457)
                       .++++ ..+|+++-|...+.++++....++ -.+++.-+-+|..-+- +...++|+.++
T Consensus       206 ~l~~~l-~~aDvVi~~~p~~~i~~~~l~~mk~~~~lin~ar~~~~~~~-~~a~~~Gv~~~  263 (293)
T 3d4o_A          206 KAAQEL-RDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKPGGTDF-RYAEKRGIKAL  263 (293)
T ss_dssp             GHHHHT-TTCSEEEECCSSCCBCHHHHHHSCTTCEEEECSSTTCSBCH-HHHHHHTCEEE
T ss_pred             hHHHHh-cCCCEEEECCChHHhCHHHHHhcCCCCEEEEecCCCCCCCH-HHHHHCCCEEE
Confidence             12333 379999999887888776655554 3577777766632122 55677787664

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.53  E-value=0.00048  Score=71.78  Aligned_cols=109  Identities=19%  Similarity=0.232  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHH-HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc
Q 012750          233 RGVVYATEALL-AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD  311 (457)
Q Consensus       233 ~Gv~~~~~~~l-~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~  311 (457)
                      ||...++-..+ +..+..+.|++|+|+|+|++|+.+|+.|...|++|+ +.|.+          +....+....      
T Consensus       200 yGt~~s~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Vi-v~D~d----------p~ra~~A~~~------  262 (435)
T 3gvp_A          200 YCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVY-VTEID----------PICALQACMD------  262 (435)
T ss_dssp             HHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHT------
T ss_pred             hhhHHHHHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEeCC----------hhhhHHHHHc------
Confidence            34443333333 245788999999999999999999999999999988 66653          2222221111      


Q ss_pred             CCCCeecCCCcccccccceeecccc-CCccccccccccc-ceEEEecCCCCC
Q 012750          312 FDGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVK-AKFIIEAANHPT  361 (457)
Q Consensus       312 ~~~~~~i~~~ell~~~~DIliPaA~-~~~It~~na~~i~-akiIvEgAN~p~  361 (457)
                        +.+..+-++++. .+||++.|.- .+.|+.+....++ -.+|+.-++++.
T Consensus       263 --G~~v~~Leeal~-~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          263 --GFRLVKLNEVIR-QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             --TCEECCHHHHTT-TCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred             --CCEeccHHHHHh-cCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence              112233344443 7899999853 4678877777764 357788888764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.50  E-value=0.00043  Score=71.19  Aligned_cols=118  Identities=21%  Similarity=0.261  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCC---CCHHHHHHhHhhcCCcc
Q 012750          235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADG---IDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       235 v~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~G---LDi~~L~~~~~~~g~~~  310 (457)
                      +..++..+++..|.++++.+|+|.|.|.+|..+|++|...|+ +|+ +.|++|.++....   |+.  +.+.+.+.-.  
T Consensus       175 ~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~-v~Dr~Gli~~~R~~~~L~~--~k~~~A~~~~--  249 (388)
T 1vl6_A          175 VSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVV-AVDRKGILNENDPETCLNE--YHLEIARITN--  249 (388)
T ss_dssp             HHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEE-EEETTEECCTTSGGGCSSH--HHHHHHHTSC--
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEE-EEECCCcccCCCcccccCH--HHHHHHHhhh--
Confidence            334555666677889999999999999999999999999999 555 9999999987553   543  3322222111  


Q ss_pred             cCCCCeecCCCcccccccceeeccccCCcccccccccccc-eEEEecCCCCC
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA-KFIIEAANHPT  361 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~p~  361 (457)
                      .+.  ..-+-.+.+. .+||||=++-.+.+|++-+++.+- .+|.+-|| |+
T Consensus       250 ~~~--~~~~L~eav~-~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSN-Pt  297 (388)
T 1vl6_A          250 PER--LSGDLETALE-GADFFIGVSRGNILKPEWIKKMSRKPVIFALAN-PV  297 (388)
T ss_dssp             TTC--CCSCHHHHHT-TCSEEEECSCSSCSCHHHHTTSCSSCEEEECCS-SS
T ss_pred             ccC--chhhHHHHHc-cCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCC-CC
Confidence            110  0001122232 589999999889999998888743 39999999 64

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.46  E-value=0.0027  Score=61.49  Aligned_cols=128  Identities=14%  Similarity=0.134  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      .+.|+..+++    +.|.+++++++.|.|.|.+|+.+++.|.+.|++|+ |.|.+          .+.+.+..++-+.. 
T Consensus       102 D~~G~~~~L~----~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~-v~~R~----------~~~~~~la~~~~~~-  165 (271)
T 1nyt_A          102 DGVGLLSDLE----RLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVT-ITNRT----------VSRAEELAKLFAHT-  165 (271)
T ss_dssp             HHHHHHHHHH----HHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHHTGGG-
T ss_pred             CHHHHHHHHH----hcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEE-EEECC----------HHHHHHHHHHhhcc-
Confidence            4777777654    45788999999999999999999999999999877 66663          34444443331110 


Q ss_pred             cCCCCeecCCCcccccccceeeccccCCcccc-ccc--ccc-cceEEEecCCCCC-CHHHHHHHHhCCCe-Ee
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKR-ENA--ADV-KAKFIIEAANHPT-DPEADEILSKRGVT-IL  377 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~-~na--~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~-vi  377 (457)
                        ......+.+++.+..+||+|-|+....-.. ..+  +.+ ...+|++-..+|. |+. .+..+++|+. ++
T Consensus       166 --~~~~~~~~~~~~~~~~DivVn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~t~~-~~~a~~~G~~~~~  235 (271)
T 1nyt_A          166 --GSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPF-LAWCEQRGSKRNA  235 (271)
T ss_dssp             --SSEEECCSGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCHH-HHHHHHTTCCEEE
T ss_pred             --CCeeEecHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeccCCcCCHH-HHHHHHcCCCeec
Confidence              001111112221147999999986433210 001  112 3468888888884 653 4567889987 54

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.39  E-value=0.0019  Score=63.89  Aligned_cols=96  Identities=20%  Similarity=0.216  Sum_probs=66.3

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK  305 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~  305 (457)
                      -.+.|..|+..    ++++.+.+++|++++|+|.|+ ||+.+|++|..+|++|. +++++-       -|+.+.      
T Consensus       138 ~~PcTp~gi~~----ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~hs~t-------~~L~~~------  199 (288)
T 1b0a_A          138 LRPCTPRGIVT----LLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTT-VTHRFT-------KNLRHH------  199 (288)
T ss_dssp             SCCHHHHHHHH----HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE-EECSSC-------SCHHHH------
T ss_pred             CCCCcHHHHHH----HHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEE-EEeCCc-------hhHHHH------
Confidence            35689988654    456678999999999999997 79999999999999987 776532       111111      


Q ss_pred             cCCcccCCCCeecCCCcccccccceeeccccC-CcccccccccccceEEEecCCCCC
Q 012750          306 TGSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAKFIIEAANHPT  361 (457)
Q Consensus       306 ~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~akiIvEgAN~p~  361 (457)
                                         -..+||+|-|... +.|+.+-++.  --+|+.-+-++.
T Consensus       200 -------------------~~~ADIVI~Avg~p~lI~~~~vk~--GavVIDVgi~r~  235 (288)
T 1b0a_A          200 -------------------VENADLLIVAVGKPGFIPGDWIKE--GAIVIDVGINRL  235 (288)
T ss_dssp             -------------------HHHCSEEEECSCCTTCBCTTTSCT--TCEEEECCCEEC
T ss_pred             -------------------hccCCEEEECCCCcCcCCHHHcCC--CcEEEEccCCcc
Confidence                               1267888877754 4666665521  235666555443

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.35  E-value=0.0023  Score=63.28  Aligned_cols=53  Identities=25%  Similarity=0.312  Sum_probs=45.6

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+.|.+|+..    ++++.+.+++|++++|+|.|+ ||+.+|.+|..+|+.|+ |++++
T Consensus       141 ~PcTp~gv~~----lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~hs~  194 (285)
T 3l07_A          141 ESCTPKGIMT----MLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRF  194 (285)
T ss_dssp             CCHHHHHHHH----HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTT
T ss_pred             CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCC
Confidence            5689999864    566678999999999999988 89999999999999976 77653

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.34  E-value=0.0018  Score=65.85  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=75.5

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCE-EEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGK-VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELL  324 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak-VVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell  324 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|++ |+ +.|.       .....+...+    .|       .... +.++++
T Consensus       159 ~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~-~~d~-------~~~~~~~~~~----~g-------~~~~~~l~ell  219 (364)
T 2j6i_A          159 AYDIEGKTIATIGAGRIGYRVLERLVPFNPKELL-YYDY-------QALPKDAEEK----VG-------ARRVENIEELV  219 (364)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEE-EECS-------SCCCHHHHHH----TT-------EEECSSHHHHH
T ss_pred             cccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEE-EECC-------CccchhHHHh----cC-------cEecCCHHHHH
Confidence            5579999999999999999999999999997 87 3443       3223332211    11       1112 234445


Q ss_pred             ccccceeeccccCC-----ccccccccccc-ceEEEecCCCC-CCHH-HHHHHHhCCCe-Eecccc
Q 012750          325 AHECDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHP-TDPE-ADEILSKRGVT-ILPDIY  381 (457)
Q Consensus       325 ~~~~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p-~t~~-a~~iL~~rGI~-viPD~l  381 (457)
                      . .|||++.|...+     .|+++....++ -.+++.-+.++ ++.+ -.+.|.+.+|. ..=|+.
T Consensus       220 ~-~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf  284 (364)
T 2j6i_A          220 A-QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVW  284 (364)
T ss_dssp             H-TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             h-cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecC
Confidence            4 899999987653     55554555554 36788888887 4444 45788888876 334443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.33  E-value=0.00071  Score=66.48  Aligned_cols=116  Identities=20%  Similarity=0.302  Sum_probs=77.7

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec---CC
Q 012750          244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM---EP  320 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i---~~  320 (457)
                      +..+.++.|++|.|+|+|++|+.+++.|...|++|+ +.|.+          .+.+....+ .       +.+.+   +.
T Consensus       149 ~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~-~~d~~----------~~~~~~~~~-~-------g~~~~~~~~l  209 (300)
T 2rir_A          149 QHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVK-VGARS----------SAHLARITE-M-------GLVPFHTDEL  209 (300)
T ss_dssp             HTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEE-EEESS----------HHHHHHHHH-T-------TCEEEEGGGH
T ss_pred             HhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHH-C-------CCeEEchhhH
Confidence            345778999999999999999999999999999987 45543          233322221 1       11211   12


Q ss_pred             CcccccccceeeccccCCccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCCeEe--ccc
Q 012750          321 SELLAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPTDPEADEILSKRGVTIL--PDI  380 (457)
Q Consensus       321 ~ell~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~vi--PD~  380 (457)
                      ++++ .+||+++-|...+.++++....++ -.+++.-+-+|..-+- +...++|+.++  |..
T Consensus       210 ~~~l-~~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~~~~~~-~~a~~~G~~~i~~pg~  270 (300)
T 2rir_A          210 KEHV-KDIDICINTIPSMILNQTVLSSMTPKTLILDLASRPGGTDF-KYAEKQGIKALLAPGL  270 (300)
T ss_dssp             HHHS-TTCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTTCSBCH-HHHHHHTCEEEECCCH
T ss_pred             HHHh-hCCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCCCCcCH-HHHHHCCCEEEECCCC
Confidence            2333 389999999988888876665554 3577887777642222 55677888764  654

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.32  E-value=0.00031  Score=70.69  Aligned_cols=168  Identities=21%  Similarity=0.272  Sum_probs=95.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcc
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL  323 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~el  323 (457)
                      .+|+|.|+|+||+.+++.|.+.         +.+|++|+|++....++  +|+.+..+.+...+.+..     ..+.+++
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~--id~~~~~~~~~~~~~~~~-----~~d~~~l   75 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD--FSLVEALRMKRETGMLRD-----DAKAIEV   75 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS--CCHHHHHHHHHHHSSCSB-----CCCHHHH
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc--cCHHHHHhhhccCccccC-----CCCHHHH
Confidence            4899999999999999998764         78999999999999887  887765543332222211     1234566


Q ss_pred             cc-cccceeeccccCCccccc---cccc-c--cceEEEecCCCCCCHHH---HHHHHhCCCeEecccccccCCceehhHH
Q 012750          324 LA-HECDVLIPCALGGVLKRE---NAAD-V--KAKFIIEAANHPTDPEA---DEILSKRGVTILPDIYANSGGVTVSYFE  393 (457)
Q Consensus       324 l~-~~~DIliPaA~~~~It~~---na~~-i--~akiIvEgAN~p~t~~a---~~iL~~rGI~viPD~laNaGGVi~S~~E  393 (457)
                      +. .++|+++.|+..+.-+.+   .+.. +  +..+|+|-- .|++...   .+..+++|+.+.  +-++-|+-+=. +.
T Consensus        76 l~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NK-kpla~~~~eL~~~A~~~g~~~~--~ea~v~~g~Pi-i~  151 (327)
T 3do5_A           76 VRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNK-GPLVAEFHGLMSLAERNGVRLM--YEATVGGAMPV-VK  151 (327)
T ss_dssp             HHHSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCS-HHHHHHHHHHHHHHHHTTCCEE--CGGGSSTTSCC-HH
T ss_pred             hcCCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCc-hhhHHHHHHHHHHHHhhCCcEE--EEEEeeecCHH-HH
Confidence            64 589999999765433222   1111 2  446777611 1333333   345568888665  22333322111 12


Q ss_pred             Hhhhc-ccC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          394 WVQNI-QGF---------MWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       394 ~~qn~-~~~---------~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                      .++++ .+.         .=+-..+..++.+ =...|.+++..|++.|.
T Consensus       152 ~l~~~l~~~~I~~I~GIlnGT~nyilt~m~~-~g~~f~~~l~~Aq~~Gy  199 (327)
T 3do5_A          152 LAKRYLALCEIESVKGIFNGTCNYILSRMEE-ERLPYEHILKEAQELGY  199 (327)
T ss_dssp             HHHTTTTTSCEEEEEEECCHHHHHHHHHHHH-HCCCHHHHHHHHHHTTS
T ss_pred             HHHHHhhCCCccEEEEEECCCcCcchhhcCc-CCcCHHHHHHHHHHcCC
Confidence            22221 110         0011223344422 14578899999999886

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.32  E-value=0.0033  Score=61.02  Aligned_cols=141  Identities=13%  Similarity=0.161  Sum_probs=88.0

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      .++.|+..+++    ..|.+++++++.|+|.|.+|+.+++.|.+.|++|+ |.|.+          .+.+.+..++.+  
T Consensus       111 Td~~G~~~~l~----~~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~-v~~r~----------~~~~~~l~~~~g--  173 (275)
T 2hk9_A          111 TDWIGFLKSLK----SLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVF-LWNRT----------KEKAIKLAQKFP--  173 (275)
T ss_dssp             CHHHHHHHHHH----HHCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEE-EECSS----------HHHHHHHTTTSC--
T ss_pred             CCHHHHHHHHH----HhCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEE-EEECC----------HHHHHHHHHHcC--
Confidence            35777777664    45778999999999999999999999999999665 66653          344444333211  


Q ss_pred             ccCCCCeec-CCCcccccccceeeccccCCcccc--ccc--cccc-ceEEEecCCCCCCHHHHHHHHhCCCeEecccccc
Q 012750          310 KDFDGGDSM-EPSELLAHECDVLIPCALGGVLKR--ENA--ADVK-AKFIIEAANHPTDPEADEILSKRGVTILPDIYAN  383 (457)
Q Consensus       310 ~~~~~~~~i-~~~ell~~~~DIliPaA~~~~It~--~na--~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laN  383 (457)
                           .... +..+.+ .++|++|-|...+....  ...  ..++ -++|++-+. ..|+- .+..+++|+.++|..-.-
T Consensus       174 -----~~~~~~~~~~~-~~aDiVi~atp~~~~~~~~~~i~~~~l~~g~~viDv~~-~~t~l-l~~a~~~g~~~v~g~~ml  245 (275)
T 2hk9_A          174 -----LEVVNSPEEVI-DKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY-KETKL-LKKAKEKGAKLLDGLPML  245 (275)
T ss_dssp             -----EEECSCGGGTG-GGCSEEEECSSTTSSTTCCCSSCGGGCCTTSEEEESSS-SCCHH-HHHHHHTTCEEECSHHHH
T ss_pred             -----CeeehhHHhhh-cCCCEEEEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC-ChHHH-HHHHHHCcCEEECCHHHH
Confidence                 1222 223334 38999999876554211  111  2233 468888888 54543 445667899988864433


Q ss_pred             cCCceehhHHHh
Q 012750          384 SGGVTVSYFEWV  395 (457)
Q Consensus       384 aGGVi~S~~E~~  395 (457)
                      .+.-..++..|.
T Consensus       246 v~q~~~a~~~w~  257 (275)
T 2hk9_A          246 LWQGIEAFKIWN  257 (275)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333334444443

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.31  E-value=0.0027  Score=64.44  Aligned_cols=116  Identities=16%  Similarity=0.261  Sum_probs=78.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|       +...+.+...+.           +.+.. +.++++.
T Consensus       159 ~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~-~d-------r~~~~~~~~~~~-----------g~~~~~~l~ell~  219 (351)
T 3jtm_A          159 AYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLY-HD-------RLQMAPELEKET-----------GAKFVEDLNEMLP  219 (351)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEE-EC-------SSCCCHHHHHHH-----------CCEECSCHHHHGG
T ss_pred             cccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEE-eC-------CCccCHHHHHhC-----------CCeEcCCHHHHHh
Confidence            5679999999999999999999999999999873 33       343444433221           12222 2344553


Q ss_pred             cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eeccccc
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIYA  382 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~la  382 (457)
                       .|||++-|...     +.|+.+....++ -.+++.-|.+++ +.++ .+.|++..|. ..=|+..
T Consensus       220 -~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~  284 (351)
T 3jtm_A          220 -KCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWD  284 (351)
T ss_dssp             -GCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             -cCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCC
Confidence             79999888653     355555555554 478999999984 4443 4789888876 3445443

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=97.28  E-value=0.0017  Score=65.25  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=74.0

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      |.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.       ...+.+...+.           +.+..+.++++. 
T Consensus       140 ~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~-~d~-------~~~~~~~~~~~-----------g~~~~~l~ell~-  199 (330)
T 4e5n_A          140 GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQY-HEA-------KALDTQTEQRL-----------GLRQVACSELFA-  199 (330)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEE-ECS-------SCCCHHHHHHH-----------TEEECCHHHHHH-
T ss_pred             CCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEE-ECC-------CCCcHhHHHhc-----------CceeCCHHHHHh-
Confidence            4468999999999999999999999999999884 344       33333322211           112223345553 


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCCe
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPE-ADEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~-a~~iL~~rGI~  375 (457)
                      .||+++-|...     +.|+.+....++ -.+++.-+.+++ ..+ -.+.|.+.+|.
T Consensus       200 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~  256 (330)
T 4e5n_A          200 SSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLG  256 (330)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCcc
Confidence            79999888653     455555556664 468999999884 443 35788888876

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.24  E-value=0.0038  Score=61.56  Aligned_cols=129  Identities=15%  Similarity=0.116  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHHhC-CCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750          231 TGRGVVYATEALLAEHG-QAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGS  308 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g-~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~  308 (457)
                      .+.|+..+++    ..+ .+++++++.|.|.|.+|+.++..|.+.|+ +|+ |.|.+          .+.+.++.++-+.
T Consensus       123 d~~G~~~~l~----~~~~~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~-v~nR~----------~~ka~~la~~~~~  187 (297)
T 2egg_A          123 DGLGYVQALE----EEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERID-MANRT----------VEKAERLVREGDE  187 (297)
T ss_dssp             HHHHHHHHHH----HHTTCCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEE-EECSS----------HHHHHHHHHHSCS
T ss_pred             CHHHHHHHHH----HhCCCCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEE-EEeCC----------HHHHHHHHHHhhh
Confidence            3456655554    456 78999999999999999999999999998 665 77764          3445444443221


Q ss_pred             cccCCCCeecCCCccc--ccccceeeccccCCccccc-----ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEecc
Q 012750          309 LKDFDGGDSMEPSELL--AHECDVLIPCALGGVLKRE-----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILPD  379 (457)
Q Consensus       309 ~~~~~~~~~i~~~ell--~~~~DIliPaA~~~~It~~-----na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viPD  379 (457)
                      .  +.  ..++.+++-  -.++||+|-|+..+.....     ....+ ...+|++-.-+|. |+ -.+..+++|+.+++.
T Consensus       188 ~--~~--~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T~-ll~~A~~~G~~~v~G  262 (297)
T 2egg_A          188 R--RS--AYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETK-WLKEAKARGARVQNG  262 (297)
T ss_dssp             S--SC--CEECHHHHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSCH-HHHHHHHTTCEEECS
T ss_pred             c--cC--ceeeHHHHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCCH-HHHHHHHCcCEEECC
Confidence            0  00  111111221  1379999999865432110     11223 3468899888884 65 456678899988765

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.23  E-value=0.0031  Score=62.33  Aligned_cols=54  Identities=30%  Similarity=0.292  Sum_probs=46.0

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.+.|.+|+.    +++++.+.+++|++++|+|.|+ ||+.+|.+|..+|+.|+ |++++
T Consensus       139 ~~PcTp~gv~----~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVt-v~h~~  193 (285)
T 3p2o_A          139 FLPCTPLGVM----KLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIK  193 (285)
T ss_dssp             CCCHHHHHHH----HHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTT
T ss_pred             CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE-EEeCC
Confidence            3568999985    4566678999999999999987 89999999999999976 77753

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.22  E-value=0.0033  Score=62.17  Aligned_cols=52  Identities=29%  Similarity=0.352  Sum_probs=44.9

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+.|.+|+..    ++++.+.+++|++++|+|.|+ ||+.+|.+|..+|+.|. |+++
T Consensus       141 ~PcTp~gv~~----lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVt-v~hs  193 (286)
T 4a5o_A          141 RPCTPKGIMT----LLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVT-VTHR  193 (286)
T ss_dssp             CCHHHHHHHH----HHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEE-EECT
T ss_pred             CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeC
Confidence            4689999854    566679999999999999987 99999999999999987 7765

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.22  E-value=0.0034  Score=63.42  Aligned_cols=116  Identities=18%  Similarity=0.144  Sum_probs=73.8

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELL  324 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell  324 (457)
                      +.++.|++|.|+|+|++|+.+|+.|. ..|.+|+ +.|.+       .-..+...+.           +.... +.++++
T Consensus       158 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~-~~d~~-------~~~~~~~~~~-----------g~~~~~~l~ell  218 (348)
T 2w2k_A          158 AHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLV-YYDVA-------PADAETEKAL-----------GAERVDSLEELA  218 (348)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEE-EECSS-------CCCHHHHHHH-----------TCEECSSHHHHH
T ss_pred             CcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEE-EECCC-------CcchhhHhhc-----------CcEEeCCHHHHh
Confidence            56799999999999999999999999 9999987 44543       2222222111           11222 223444


Q ss_pred             ccccceeeccccCC-----ccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCCe-Eeccccc
Q 012750          325 AHECDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHPT-DP-EADEILSKRGVT-ILPDIYA  382 (457)
Q Consensus       325 ~~~~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t~-~a~~iL~~rGI~-viPD~la  382 (457)
                      . +||+++.|...+     .|+.+....++ -.+|+.-+.+++ +. +..+.|.+..|. ..-|+..
T Consensus       219 ~-~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  284 (348)
T 2w2k_A          219 R-RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE  284 (348)
T ss_dssp             H-HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred             c-cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCC
Confidence            3 899999997554     44444444454 357888888874 43 345678776654 3455543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.20  E-value=0.0033  Score=62.55  Aligned_cols=96  Identities=18%  Similarity=0.202  Sum_probs=68.9

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK  305 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~  305 (457)
                      -.+.|..|+.    +++++.+.+++|++++|+|.|+ ||+.+|++|..+|++|. |++++-       -|+.+       
T Consensus       144 ~~PcTp~gi~----~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~hs~t-------~~L~~-------  204 (301)
T 1a4i_A          144 FIPCTPKGCL----ELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVT-TCHSKT-------AHLDE-------  204 (301)
T ss_dssp             CCCHHHHHHH----HHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTTC-------SSHHH-------
T ss_pred             ccCchHHHHH----HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEE-EEECCc-------ccHHH-------
Confidence            3468998864    4566678999999999999996 89999999999999977 776531       01111       


Q ss_pred             cCCcccCCCCeecCCCcccccccceeeccccC-CcccccccccccceEEEecCCCCC
Q 012750          306 TGSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAKFIIEAANHPT  361 (457)
Q Consensus       306 ~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~akiIvEgAN~p~  361 (457)
                                        .-..+||+|-|... +.|+.+-++  .--+|+.-+-++.
T Consensus       205 ------------------~~~~ADIVI~Avg~p~~I~~~~vk--~GavVIDVgi~~~  241 (301)
T 1a4i_A          205 ------------------EVNKGDILVVATGQPEMVKGEWIK--PGAIVIDCGINYV  241 (301)
T ss_dssp             ------------------HHTTCSEEEECCCCTTCBCGGGSC--TTCEEEECCCBC-
T ss_pred             ------------------HhccCCEEEECCCCcccCCHHHcC--CCcEEEEccCCCc
Confidence                              12378999988764 577776654  2357777776654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=97.19  E-value=0.0019  Score=65.52  Aligned_cols=108  Identities=15%  Similarity=0.205  Sum_probs=72.5

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.       .. +.+   . ..+.       +.+.. +.++++ 
T Consensus       155 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~-------~~-~~~---~-~~~~-------g~~~~~~l~ell-  213 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLV-WGR-------EN-SKE---R-ARAD-------GFAVAESKDALF-  213 (352)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-ECS-------HH-HHH---H-HHHT-------TCEECSSHHHHH-
T ss_pred             CccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEE-ECC-------CC-CHH---H-HHhc-------CceEeCCHHHHH-
Confidence            4568999999999999999999999999999984 333       21 111   1 1111       22233 334454 


Q ss_pred             cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC--CHHHHHHHHhCCCe
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT--DPEADEILSKRGVT  375 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~--t~~a~~iL~~rGI~  375 (457)
                      .+||+++-|...     +.|+.+....++ -.+++.-+.+++  +.+-.+.|.+..|.
T Consensus       214 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  271 (352)
T 3gg9_A          214 EQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPG  271 (352)
T ss_dssp             HHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSS
T ss_pred             hhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCcc
Confidence            379999887643     345555555554 468899998884  34456789998885

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=97.13  E-value=0.0042  Score=61.23  Aligned_cols=95  Identities=20%  Similarity=0.240  Sum_probs=65.0

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhH
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHK  303 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~  303 (457)
                      -.+.|.+|++..    +++.+.+++|++++|+|.|+ ||+.+|.+|..+  |++|+ +++++-       -|+.+.    
T Consensus       137 ~~PcTp~gi~~l----l~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVt-v~h~~t-------~~L~~~----  200 (281)
T 2c2x_A          137 PLPCTPRGIVHL----LRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVT-LCHTGT-------RDLPAL----  200 (281)
T ss_dssp             CCCHHHHHHHHH----HHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEE-EECTTC-------SCHHHH----
T ss_pred             CCCChHHHHHHH----HHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEE-EEECch-------hHHHHH----
Confidence            356899887555    45568999999999999997 699999999999  88887 776432       011111    


Q ss_pred             hhcCCcccCCCCeecCCCcccccccceeeccccC-CcccccccccccceEEEecCCCC
Q 012750          304 DKTGSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAKFIIEAANHP  360 (457)
Q Consensus       304 ~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~akiIvEgAN~p  360 (457)
                                           -..+||+|-|... +.|+.+-++. . -+|+.-+-.+
T Consensus       201 ---------------------~~~ADIVI~Avg~p~~I~~~~vk~-G-avVIDVgi~r  235 (281)
T 2c2x_A          201 ---------------------TRQADIVVAAVGVAHLLTADMVRP-G-AAVIDVGVSR  235 (281)
T ss_dssp             ---------------------HTTCSEEEECSCCTTCBCGGGSCT-T-CEEEECCEEE
T ss_pred             ---------------------HhhCCEEEECCCCCcccCHHHcCC-C-cEEEEccCCC
Confidence                                 2367888888754 4677666533 2 3555555443

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.13  E-value=0.01  Score=59.06  Aligned_cols=108  Identities=21%  Similarity=0.261  Sum_probs=70.4

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+.        +...    ..+.       +....+.++++. 
T Consensus       137 ~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~d~~~--------~~~~----~~~~-------g~~~~~l~ell~-  195 (313)
T 2ekl_A          137 GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVL-AYDILD--------IREK----AEKI-------NAKAVSLEELLK-  195 (313)
T ss_dssp             CCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEE-EECSSC--------CHHH----HHHT-------TCEECCHHHHHH-
T ss_pred             CCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EECCCc--------chhH----HHhc-------CceecCHHHHHh-
Confidence            456999999999999999999999999999998 445432        1111    1111       122223345553 


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCC-CCHH-HHHHHHhCCCe
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHP-TDPE-ADEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p-~t~~-a~~iL~~rGI~  375 (457)
                      +||+++.|...     +.|+++....++ -.+++.-+-++ ++.+ ..+.|.+.+|.
T Consensus       196 ~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~  252 (313)
T 2ekl_A          196 NSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVY  252 (313)
T ss_dssp             HCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEE
T ss_pred             hCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCc
Confidence            89999988753     345444444554 46788877776 4443 35678877764

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=97.12  E-value=0.0013  Score=67.66  Aligned_cols=171  Identities=23%  Similarity=0.227  Sum_probs=102.4

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750          229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS  308 (457)
Q Consensus       229 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~  308 (457)
                      .+++--++..+-.+.+..|.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.            ..     ...+ 
T Consensus        96 ~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~-~d~------------~~-----~~~~-  156 (381)
T 3oet_A           96 IAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL-CDP------------PR-----AARG-  156 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEE-ECH------------HH-----HHTT-
T ss_pred             chhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHHHHHHHHCCCEEEE-ECC------------Ch-----HHhc-
Confidence            4556566666666677889999999999999999999999999999999984 332            10     0000 


Q ss_pred             cccCCCCeecCCCcccccccceeecccc---------CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-
Q 012750          309 LKDFDGGDSMEPSELLAHECDVLIPCAL---------GGVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-  375 (457)
Q Consensus       309 ~~~~~~~~~i~~~ell~~~~DIliPaA~---------~~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-  375 (457)
                          .+....+.++++. +|||++-|..         .+.|+.+....++ -.+++.-+-+++ +.+| .+.|++.+|. 
T Consensus       157 ----~~~~~~sl~ell~-~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~g  231 (381)
T 3oet_A          157 ----DEGDFRTLDELVQ-EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLS  231 (381)
T ss_dssp             ----CCSCBCCHHHHHH-HCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEE
T ss_pred             ----cCcccCCHHHHHh-hCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeE
Confidence                0111223344543 7899987763         3355555555554 468899998884 4443 4678888775 


Q ss_pred             EecccccccCCceehhHHHhhh---cccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 012750          376 ILPDIYANSGGVTVSYFEWVQN---IQGFMWEEDKVNNELRRYMIRAFHNIKG  425 (457)
Q Consensus       376 viPD~laNaGGVi~S~~E~~qn---~~~~~w~~e~v~~~l~~~m~~~~~~v~~  425 (457)
                      ..=|+..+=--.-.+.++  .+   ..|..|.-.+...+....+.+++.+.+.
T Consensus       232 A~LDV~e~EP~~~~~L~~--~~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~  282 (381)
T 3oet_A          232 VVLDVWEGEPDLNVALLE--AVDIGTSHIAGYTLEGKARGTTQVFEAYSAFIG  282 (381)
T ss_dssp             EEESCCTTTTSCCHHHHH--HSSEECSSCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeeccccCCCCcchhhh--CCEEECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence            455665544322112111  11   1234443344455555545555555443

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.11  E-value=0.0045  Score=61.56  Aligned_cols=53  Identities=26%  Similarity=0.354  Sum_probs=45.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -.+.|.+|+..    ++++.+.+++|++++|+|.|+ ||+.+|.+|..+|+.|. |+++
T Consensus       144 ~~PcTp~gv~~----lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~~~  197 (300)
T 4a26_A          144 FTPCTAKGVIV----LLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVT-IVHS  197 (300)
T ss_dssp             CCCHHHHHHHH----HHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECT
T ss_pred             CCCCCHHHHHH----HHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence            35689999865    556678999999999999987 89999999999999976 8876

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=97.07  E-value=0.0036  Score=63.35  Aligned_cols=115  Identities=20%  Similarity=0.265  Sum_probs=76.6

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      |.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|       +...+.+..     .        +.+.. +.++++.
T Consensus       168 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d-------r~~~~~~~~-----~--------g~~~~~~l~ell~  226 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHY-HN-------RTRLSHALE-----E--------GAIYHDTLDSLLG  226 (345)
T ss_dssp             BCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEE-EC-------SSCCCHHHH-----T--------TCEECSSHHHHHH
T ss_pred             ccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEE-EC-------CCCcchhhh-----c--------CCeEeCCHHHHHh
Confidence            4579999999999999999999999999999984 34       333332211     0        12223 3345553


Q ss_pred             cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eecccccc
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIYAN  383 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~laN  383 (457)
                       +||+++-|...     +.|+.+....++ -.+++.-|.+++ ..+| .+.|.+..|. ..=|+..+
T Consensus       227 -~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~  292 (345)
T 4g2n_A          227 -ASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFAN  292 (345)
T ss_dssp             -TCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTT
T ss_pred             -hCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCC
Confidence             79999877653     455555555554 478999999984 4444 4678887775 34454443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.02  E-value=0.0042  Score=62.31  Aligned_cols=107  Identities=18%  Similarity=0.254  Sum_probs=69.7

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+.        +.+...    +.+       ....+.++++. +
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~-~~d~~~--------~~~~~~----~~g-------~~~~~l~e~l~-~  200 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLY-YWSRHR--------KVNVEK----ELK-------ARYMDIDELLE-K  200 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEE-EECSSC--------CHHHHH----HHT-------EEECCHHHHHH-H
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEE-EECCCc--------chhhhh----hcC-------ceecCHHHHHh-h
Confidence            57999999999999999999999999999987 455432        111111    111       11122234443 8


Q ss_pred             cceeeccccCC-----cccccccccccceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750          328 CDVLIPCALGG-----VLKRENAADVKAKFIIEAANHPT-DPEA-DEILSKRGVT  375 (457)
Q Consensus       328 ~DIliPaA~~~-----~It~~na~~i~akiIvEgAN~p~-t~~a-~~iL~~rGI~  375 (457)
                      ||+++.|...+     .++++....++..+++.-+.+++ +.++ .+.|.+..|.
T Consensus       201 aDiVil~vp~~~~t~~~i~~~~~~~mk~gilin~srg~~vd~~aL~~aL~~~~i~  255 (333)
T 2d0i_A          201 SDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGRGALVDEKAVTEAIKQGKLK  255 (333)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHHHTBTCEEEECSCGGGBCHHHHHHHHHTTCBC
T ss_pred             CCEEEEcCCCChHHHHHhCHHHHhhCCCCEEEECCCCcccCHHHHHHHHHcCCce
Confidence            99999998665     34433334444338888888885 4433 4678877664

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.02  E-value=0.0037  Score=60.68  Aligned_cols=129  Identities=12%  Similarity=0.126  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD  311 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~  311 (457)
                      +.|+..++    +..|.+++++++.|.|.|.+|+.++..|.+.|++|+ |.+++          .+++.+..++-+.   
T Consensus       103 ~~G~~~~L----~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~-v~~R~----------~~~a~~l~~~~~~---  164 (272)
T 1p77_A          103 GIGLVTDL----QRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIV-LANRT----------FSKTKELAERFQP---  164 (272)
T ss_dssp             HHHHHHHH----HHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEE-EEESS----------HHHHHHHHHHHGG---
T ss_pred             HHHHHHHH----HHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHHccc---
Confidence            66776665    446788999999999999999999999999998877 77663          3444443332111   


Q ss_pred             CCCCeecCCCcccccccceeeccccCCcccc-cccc--cc-cceEEEecCCCC-C-CHHHHHHHHhCCCe-Eecc
Q 012750          312 FDGGDSMEPSELLAHECDVLIPCALGGVLKR-ENAA--DV-KAKFIIEAANHP-T-DPEADEILSKRGVT-ILPD  379 (457)
Q Consensus       312 ~~~~~~i~~~ell~~~~DIliPaA~~~~It~-~na~--~i-~akiIvEgAN~p-~-t~~a~~iL~~rGI~-viPD  379 (457)
                      +......+.+++-..++||+|-|+.-..... ..++  .+ ...+|++-..+| . |+. .+..+++|+. +++.
T Consensus       165 ~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~~t~l-l~~a~~~G~~~~v~G  238 (272)
T 1p77_A          165 YGNIQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPF-IALCKSLGLTNVSDG  238 (272)
T ss_dssp             GSCEEEEEGGGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCHH-HHHHHHTTCCCEECS
T ss_pred             cCCeEEeeHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeCCCCcCCHH-HHHHHHcCCCEeeCC
Confidence            0011111112221137999999986543210 0011  12 246788888777 3 664 4567788987 7653

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.02  E-value=0.0055  Score=60.26  Aligned_cols=51  Identities=24%  Similarity=0.171  Sum_probs=43.1

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECC
Q 012750          227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -.+.|.+|+...++.    .+  ++|++++|+|.|+ ||+.+|.+|..+|+.|+ |+++
T Consensus       131 ~~PcTp~gv~~lL~~----~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVt-v~~~  182 (276)
T 3ngx_A          131 LVPATPRAVIDIMDY----YG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVS-VCHS  182 (276)
T ss_dssp             SCCHHHHHHHHHHHH----HT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECT
T ss_pred             CCCCcHHHHHHHHHH----hC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEE-EEeC
Confidence            356899999766554    45  9999999999986 89999999999999987 7765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.00  E-value=0.016  Score=56.94  Aligned_cols=174  Identities=14%  Similarity=0.147  Sum_probs=99.7

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccc
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE  327 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~  327 (457)
                      .+..++|.|+|+|++|..+|+.|.+.|.+|+ +.|.+          .+.+.+..+. |       .... ++.+++ .+
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~-~~dr~----------~~~~~~~~~~-g-------~~~~~~~~e~~-~~   65 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVA-IWNRS----------PGKAAALVAA-G-------AHLCESVKAAL-SA   65 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------HHHHHHHHHH-T-------CEECSSHHHHH-HH
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHC-C-------CeecCCHHHHH-hc
Confidence            4567899999999999999999999999887 55653          4444444433 1       1211 223333 36


Q ss_pred             cceeeccccCCc-----cccccccc-ccceEEEecCCCCCC--HHHHHHHHhCCCeEecccc------cccCCce--e--
Q 012750          328 CDVLIPCALGGV-----LKRENAAD-VKAKFIIEAANHPTD--PEADEILSKRGVTILPDIY------ANSGGVT--V--  389 (457)
Q Consensus       328 ~DIliPaA~~~~-----It~~na~~-i~akiIvEgAN~p~t--~~a~~iL~~rGI~viPD~l------aNaGGVi--~--  389 (457)
                      ||++|-|.....     +.++.+.. .+-++|+.-.+....  .+..+.+.++|+.++.--+      +..++.+  +  
T Consensus        66 aDvVi~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg  145 (306)
T 3l6d_A           66 SPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTG  145 (306)
T ss_dssp             SSEEEECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEE
T ss_pred             CCEEEEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcC
Confidence            899998865443     22112222 245688877776543  3445678899998875322      2222321  1  


Q ss_pred             --hhHHHhhh----c-ccCCCC--HHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750          390 --SYFEWVQN----I-QGFMWE--EDK-----VNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG  442 (457)
Q Consensus       390 --S~~E~~qn----~-~~~~w~--~e~-----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  442 (457)
                        ..+|.++.    + ....+-  .++     ....+...+...+.+.+..+++.|+++.+...++.
T Consensus       146 ~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~  212 (306)
T 3l6d_A          146 DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLL  212 (306)
T ss_dssp             CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence              22333322    2 112222  221     11122222345666777888999999887665543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.99  E-value=0.0053  Score=62.61  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=75.3

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|+||.|+|+|++|+.+|+.|...|.+|++        ||+.. +.+...+    .       +.+..+.++++. 
T Consensus       171 ~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~--------~d~~~-~~~~~~~----~-------g~~~~~l~ell~-  229 (365)
T 4hy3_A          171 ARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRV--------FDPWL-PRSMLEE----N-------GVEPASLEDVLT-  229 (365)
T ss_dssp             CCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEE--------ECSSS-CHHHHHH----T-------TCEECCHHHHHH-
T ss_pred             ccccCCCEEEEecCCcccHHHHHhhhhCCCEEEE--------ECCCC-CHHHHhh----c-------CeeeCCHHHHHh-
Confidence            5679999999999999999999999999999984        34432 2222211    1       122233445553 


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCeEeccccc
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVTILPDIYA  382 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~viPD~la  382 (457)
                      .|||++-|...     +.|+.+....++ -.+++.-|-+++ ..+| .+.|.+..|...=|+..
T Consensus       230 ~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~  293 (365)
T 4hy3_A          230 KSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYP  293 (365)
T ss_dssp             SCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCS
T ss_pred             cCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCC
Confidence            79999877643     355555555554 368888888884 4443 46788877764444443

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.97  E-value=0.0011  Score=67.05  Aligned_cols=107  Identities=20%  Similarity=0.189  Sum_probs=72.4

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH  326 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~  326 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.+.     +  +  ...   ...       +.+.. +.++++. 
T Consensus       164 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~-~d~~~-----~--~--~~~---~~~-------g~~~~~~l~ell~-  222 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLF-YDPYL-----S--D--GVE---RAL-------GLQRVSTLQDLLF-  222 (347)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE-ECTTS-----C--T--THH---HHH-------TCEECSSHHHHHH-
T ss_pred             cCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEE-ECCCc-----c--h--hhH---hhc-------CCeecCCHHHHHh-
Confidence            469999999999999999999999999999884 45431     1  1  111   111       11222 3345554 


Q ss_pred             ccceeeccccC-----Ccccccccccccc-eEEEecCCCCC-CHH-HHHHHHhCCCe
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVKA-KFIIEAANHPT-DPE-ADEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~a-kiIvEgAN~p~-t~~-a~~iL~~rGI~  375 (457)
                      .|||++.|...     +.|+++....++. .+++.-+.+++ +.+ ..+.|.+++|.
T Consensus       223 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~  279 (347)
T 1mx3_A          223 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  279 (347)
T ss_dssp             HCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCc
Confidence            79999887643     4566666666653 68888888884 444 45789998876

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.91  E-value=0.0063  Score=60.81  Aligned_cols=108  Identities=13%  Similarity=0.141  Sum_probs=69.1

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.+.       -..+.+.    +.       +....+.++++ .+
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~-~d~~~-------~~~~~~~----~~-------g~~~~~l~e~l-~~  210 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFL-YTGRQ-------PRPEEAA----EF-------QAEFVSTPELA-AQ  210 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEE-EESSS-------CCHHHHH----TT-------TCEECCHHHHH-HH
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCCC-------cchhHHH----hc-------CceeCCHHHHH-hh
Confidence            468999999999999999999999999999874 44321       1122221    11       12222333444 38


Q ss_pred             cceeeccccCC-----ccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCCe
Q 012750          328 CDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHPT-D-PEADEILSKRGVT  375 (457)
Q Consensus       328 ~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t-~~a~~iL~~rGI~  375 (457)
                      ||+++.|....     .++.+....++ -.+++.-+.++. + .+-.+.|.+.+|.
T Consensus       211 aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~  266 (330)
T 2gcg_A          211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIA  266 (330)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             CCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCcc
Confidence            99999987654     33333334454 357788888763 4 4445678887664

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.89  E-value=0.0021  Score=66.30  Aligned_cols=125  Identities=23%  Similarity=0.276  Sum_probs=84.5

Q ss_pred             CcchHHHHH--HHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCC--CCCHHHHHHh
Q 012750          228 EAATGRGVV--YATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNAD--GIDIHKLLAH  302 (457)
Q Consensus       228 ~~aTg~Gv~--~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~--GLDi~~L~~~  302 (457)
                      +..-|.+++  .++-.+++-.|++++..||+|.|-|.+|.++|++|...|+ +|+ +.|++|.++...  .|+  .+.+.
T Consensus       162 DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~-v~D~~Gli~~~R~~~L~--~~k~~  238 (398)
T 2a9f_A          162 DDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVT-VVDKFGIINEQEAAQLA--PHHLD  238 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEE-EEETTEECCTTCCCSCC--C---C
T ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEE-EEECCCcccCCccccch--HHHHH
Confidence            344444443  3445566667888999999999999999999999999999 666 999999888753  343  22222


Q ss_pred             HhhcCCcccCCCCeecCCCcccccccceeeccccCCccccccccccc-ceEEEecCCCCC
Q 012750          303 KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT  361 (457)
Q Consensus       303 ~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~  361 (457)
                      +.+...  .+  ...-+-.+.+. .+||||=++-.+.+|++-+.+.+ =.||.--|| |+
T Consensus       239 fa~~~~--~~--~~~~~L~eav~-~ADV~IG~Sapgl~T~EmVk~Ma~~pIIfalsN-Pt  292 (398)
T 2a9f_A          239 IAKVTN--RE--FKSGTLEDALE-GADIFIGVSAPGVLKAEWISKMAARPVIFAMAN-PI  292 (398)
T ss_dssp             HHHHHS--CT--TCCCSCSHHHH-TTCSEEECCSTTCCCHHHHHTSCSSCEEEECCS-SS
T ss_pred             HhhccC--cc--cchhhHHHHhc-cCCEEEecCCCCCCCHHHHHhhCCCCEEEECCC-CC
Confidence            221100  01  01112233343 57999999989999999887764 468888888 54

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.86  E-value=0.013  Score=57.25  Aligned_cols=128  Identities=15%  Similarity=0.195  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      +.|...+   +++..|.+++++++.|.|.|.+|+.++..|.+.|+ +|+ |.+++          .+...+..++-+.  
T Consensus       103 ~~G~~~~---lL~~~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~-i~~R~----------~~~a~~la~~~~~--  166 (272)
T 3pwz_A          103 GIGLLRD---IEENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELV-IANRD----------MAKALALRNELDH--  166 (272)
T ss_dssp             HHHHHHH---HHTTSCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEE-EECSC----------HHHHHHHHHHHCC--
T ss_pred             HHHHHHH---HHHHcCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHHhcc--
Confidence            5566554   14556888999999999999999999999999997 665 77663          3444444443222  


Q ss_pred             cCCCCeecCCCcccccccceeeccccCCccccc---ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCe-Eec
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKRE---NAADV-KAKFIIEAANHPT-DPEADEILSKRGVT-ILP  378 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~---na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~-viP  378 (457)
                        .....++.+++-..++||+|-|..-+.-...   ..+.+ +..+|++-.-+|. |+- -+.-+++|+. +++
T Consensus       167 --~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P~~T~l-l~~A~~~G~~~~~~  237 (272)
T 3pwz_A          167 --SRLRISRYEALEGQSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGKGLTPF-LRLAREQGQARLAD  237 (272)
T ss_dssp             --TTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSCCSCHH-HHHHHHHSCCEEEC
T ss_pred             --CCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCCCCCHH-HHHHHHCCCCEEEC
Confidence              0112223333323689999987654321110   11223 4578899988884 663 4456788886 544

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.82  E-value=0.0029  Score=67.39  Aligned_cols=108  Identities=25%  Similarity=0.303  Sum_probs=70.4

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      |.++.|+++.|+|+|++|+.+|+.|...|.+|++ .|.       .. +.+...    +.|       ....+.++++. 
T Consensus       137 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~-~d~-------~~-~~~~a~----~~g-------~~~~~l~e~~~-  195 (529)
T 1ygy_A          137 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA-YDP-------YV-SPARAA----QLG-------IELLSLDDLLA-  195 (529)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE-ECT-------TS-CHHHHH----HHT-------CEECCHHHHHH-
T ss_pred             ccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEE-ECC-------CC-ChhHHH----hcC-------cEEcCHHHHHh-
Confidence            4569999999999999999999999999999884 343       32 222221    111       12223334443 


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~  375 (457)
                      +||+++-|...     +.++++..+.++ -.+|+.-+-+++ +.++ .+.|.+..|.
T Consensus       196 ~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~  252 (529)
T 1ygy_A          196 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVR  252 (529)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEE
T ss_pred             cCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCcc
Confidence            89999998643     455554455554 468888888775 4333 3677776553

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.81  E-value=0.0077  Score=63.68  Aligned_cols=106  Identities=18%  Similarity=0.291  Sum_probs=67.3

Q ss_pred             HHHHHHHHHH-HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccC
Q 012750          234 GVVYATEALL-AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF  312 (457)
Q Consensus       234 Gv~~~~~~~l-~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~  312 (457)
                      |...++...+ +..+..+.|++++|.|+|.+|+.+|+.|...|++|+ ++|.+          ...+.+.... +     
T Consensus       246 Gt~~sl~dgi~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Vi-v~D~~----------~~~a~~Aa~~-g-----  308 (488)
T 3ond_A          246 GCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVI-VTEID----------PICALQATME-G-----  308 (488)
T ss_dssp             HHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHT-T-----
T ss_pred             cccHHHHHHHHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHh-C-----
Confidence            4444333333 456888999999999999999999999999999988 66663          3333333322 1     


Q ss_pred             CCCeecCCCcccccccceeecccc-CCcccccccccccc-eEEEecCCC
Q 012750          313 DGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVKA-KFIIEAANH  359 (457)
Q Consensus       313 ~~~~~i~~~ell~~~~DIliPaA~-~~~It~~na~~i~a-kiIvEgAN~  359 (457)
                        ....+.++++ ..+|+++.|.- .+.++.+....++- -+|+..++.
T Consensus       309 --~dv~~lee~~-~~aDvVi~atG~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          309 --LQVLTLEDVV-SEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             --CEECCGGGTT-TTCSEEEECSSCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             --CccCCHHHHH-HhcCEEEeCCCChhhhhHHHHHhcCCCeEEEEcCCC
Confidence              1222333433 37899987764 35666655555533 355555554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.81  E-value=0.016  Score=58.21  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=71.2

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.+.        +.+..    .+.       +.+..+.++++. 
T Consensus       160 ~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~--------~~~~~----~~~-------g~~~~~l~ell~-  218 (335)
T 2g76_A          160 GTELNGKTLGILGLGRIGREVATRMQSFGMKTIG-YDPII--------SPEVS----ASF-------GVQQLPLEEIWP-  218 (335)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE-ECSSS--------CHHHH----HHT-------TCEECCHHHHGG-
T ss_pred             CcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEE-ECCCc--------chhhh----hhc-------CceeCCHHHHHh-
Confidence            4569999999999999999999999999999984 44321        11111    111       122223345554 


Q ss_pred             ccceeeccccCC-----ccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCCe
Q 012750          327 ECDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHPT-DPE-ADEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t~~-a~~iL~~rGI~  375 (457)
                      +||+++-|...+     .|+++....++ -.+++.-+-+++ ..+ ..+.|.+..|.
T Consensus       219 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~  275 (335)
T 2g76_A          219 LCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA  275 (335)
T ss_dssp             GCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence            899999886543     45555555554 367888888874 433 35678887764

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.78  E-value=0.015  Score=57.01  Aligned_cols=127  Identities=11%  Similarity=0.112  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      +.|...++    +..|.+++++++.|.|.|.+|+.++..|.+.|+ +|+ |.+++          .+...+..++.+.. 
T Consensus       110 ~~G~~~~L----~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~-v~~R~----------~~~a~~la~~~~~~-  173 (281)
T 3o8q_A          110 GEGLVQDL----LAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASIT-VTNRT----------FAKAEQLAELVAAY-  173 (281)
T ss_dssp             HHHHHHHH----HHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEE-EEESS----------HHHHHHHHHHHGGG-
T ss_pred             HHHHHHHH----HHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEE-EEECC----------HHHHHHHHHHhhcc-
Confidence            56766665    456888999999999999999999999999997 665 77663          34444433321110 


Q ss_pred             cCCCCeecCCCcccccccceeeccccCCccccc---ccccc-cceEEEecCCCC-CCHHHHHHHHhCCCe-Eec
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKRE---NAADV-KAKFIIEAANHP-TDPEADEILSKRGVT-ILP  378 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~---na~~i-~akiIvEgAN~p-~t~~a~~iL~~rGI~-viP  378 (457)
                        ......+.+++. .++||+|-|..-+...+.   ..+.+ +..+|++-.-+| .|+-. +..+++|+. +++
T Consensus       174 --~~~~~~~~~~l~-~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P~~T~ll-~~A~~~G~~~~~~  243 (281)
T 3o8q_A          174 --GEVKAQAFEQLK-QSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFN-QWARQHGCAQAID  243 (281)
T ss_dssp             --SCEEEEEGGGCC-SCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCCSSCCHHH-HHHHHTTCSEEEC
T ss_pred             --CCeeEeeHHHhc-CCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCCccCHHH-HHHHHCCCCEEEC
Confidence              011222233332 689999987754432111   11223 346889998888 47644 567889986 544

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.75  E-value=0.021  Score=58.71  Aligned_cols=109  Identities=12%  Similarity=0.100  Sum_probs=71.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+       .-..+...+    .|       .... +.++++.
T Consensus       186 ~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~-~~d~~-------~~~~~~~~~----~G-------~~~~~~l~ell~  246 (393)
T 2nac_A          186 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLH-YTDRH-------RLPESVEKE----LN-------LTWHATREDMYP  246 (393)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEE-EECSS-------CCCHHHHHH----HT-------CEECSSHHHHGG
T ss_pred             CccCCCCEEEEEeECHHHHHHHHHHHhCCCEEE-EEcCC-------ccchhhHhh----cC-------ceecCCHHHHHh
Confidence            457999999999999999999999999999998 34442       222221111    11       1111 2345554


Q ss_pred             cccceeecccc-----CCccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCCe
Q 012750          326 HECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DP-EADEILSKRGVT  375 (457)
Q Consensus       326 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~-~a~~iL~~rGI~  375 (457)
                       .|||++-|..     .+.|+++....++ -.+++.-+-+++ +. +..+.|.+..|.
T Consensus       247 -~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  303 (393)
T 2nac_A          247 -VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA  303 (393)
T ss_dssp             -GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred             -cCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCee
Confidence             8999988865     3456555555664 468888888874 44 345678777664

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.71  E-value=0.017  Score=57.60  Aligned_cols=107  Identities=14%  Similarity=0.133  Sum_probs=69.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC-CCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI-TGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~-~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|. +.        +.....    +.+       .... +.++++.
T Consensus       142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~d~~~~--------~~~~~~----~~g-------~~~~~~l~ell~  201 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDID-YFDTHRA--------SSSDEA----SYQ-------ATFHDSLDSLLS  201 (320)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECSSCC--------CHHHHH----HHT-------CEECSSHHHHHH
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCCc--------Chhhhh----hcC-------cEEcCCHHHHHh
Confidence            46899999999999999999999999999988 4444 32        111111    111       1222 2334443


Q ss_pred             cccceeeccccC-----Cccccccccccc-ceEEEecCCCC-CCHH-HHHHHHhCCCe
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHP-TDPE-ADEILSKRGVT  375 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p-~t~~-a~~iL~~rGI~  375 (457)
                       +||+++-|...     +.|+++....++ -.+++.-+.++ ++.+ ..+.|.+.+|.
T Consensus       202 -~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~  258 (320)
T 1gdh_A          202 -VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA  258 (320)
T ss_dssp             -HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             -hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence             89999888653     345544445554 36788888876 4444 35678887765

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.71  E-value=0.0037  Score=62.06  Aligned_cols=107  Identities=20%  Similarity=0.289  Sum_probs=70.1

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+.        +.+..    .+.       +.+..+.++++. +
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~d~~~--------~~~~~----~~~-------g~~~~~l~ell~-~  196 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNIL-LYDPYP--------NEERA----KEV-------NGKFVDLETLLK-E  196 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC--------CHHHH----HHT-------TCEECCHHHHHH-H
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEE-EECCCC--------ChhhH----hhc-------CccccCHHHHHh-h
Confidence            46999999999999999999999999999998 445432        11111    111       122223345554 8


Q ss_pred             cceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCCe
Q 012750          328 CDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPE-ADEILSKRGVT  375 (457)
Q Consensus       328 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~-a~~iL~~rGI~  375 (457)
                      ||+++.|...     +.|+++....++ -.+++.-+-+++ +.+ ..+.|.+..|.
T Consensus       197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~  252 (307)
T 1wwk_A          197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIA  252 (307)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence            9999988653     345444445554 357777777764 443 35688887764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.71  E-value=0.003  Score=64.14  Aligned_cols=108  Identities=16%  Similarity=0.262  Sum_probs=70.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC  328 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~  328 (457)
                      ++.++|.|+|+|++|..+|+.|.+.|.+|+ +.|.+          .+.+.+..+. +       .... +.++++. +|
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-g-------~~~~~s~~e~~~-~a   79 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECV-VYDLN----------VNAVQALERE-G-------IAGARSIEEFCA-KL   79 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHTT-T-------CBCCSSHHHHHH-HS
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEE-EEeCC----------HHHHHHHHHC-C-------CEEeCCHHHHHh-cC
Confidence            467899999999999999999999999987 55653          3444444332 1       1111 2233332 44


Q ss_pred             ---ceeeccccCCcccccccc----cc-cceEEEecCCCCC--CHHHHHHHHhCCCeEec
Q 012750          329 ---DVLIPCALGGVLKRENAA----DV-KAKFIIEAANHPT--DPEADEILSKRGVTILP  378 (457)
Q Consensus       329 ---DIliPaA~~~~It~~na~----~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viP  378 (457)
                         |+++-|-... ...+.+.    .+ +-++|+..+|...  +.+..+.+.++|+.+++
T Consensus        80 ~~~DvVi~~vp~~-~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vd  138 (358)
T 4e21_A           80 VKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVD  138 (358)
T ss_dssp             CSSCEEEECSCGG-GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCCEEEEeCCHH-HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEe
Confidence               9998886555 2222222    23 3479999998873  45556789999998875

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.68  E-value=0.0099  Score=62.74  Aligned_cols=97  Identities=21%  Similarity=0.287  Sum_probs=66.8

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc
Q 012750          245 EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL  324 (457)
Q Consensus       245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell  324 (457)
                      ..+..+.|++|.|+|+|+||+.+|+.|...|++|+ +.|.+          +....+....        +....+.++++
T Consensus       250 ~~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Vi-v~d~~----------~~~~~~a~~~--------g~~~~~l~ell  310 (479)
T 1v8b_A          250 ATDFLISGKIVVICGYGDVGKGCASSMKGLGARVY-ITEID----------PICAIQAVME--------GFNVVTLDEIV  310 (479)
T ss_dssp             HHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEE-EECSC----------HHHHHHHHTT--------TCEECCHHHHT
T ss_pred             ccccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEE-EEeCC----------hhhHHHHHHc--------CCEecCHHHHH
Confidence            45778999999999999999999999999999998 44542          2222222211        11222334454


Q ss_pred             ccccceeeccc-cCCccccccccccc-ceEEEecCCCCC
Q 012750          325 AHECDVLIPCA-LGGVLKRENAADVK-AKFIIEAANHPT  361 (457)
Q Consensus       325 ~~~~DIliPaA-~~~~It~~na~~i~-akiIvEgAN~p~  361 (457)
                      . .||+++-|. ..+.|+.+....+| -.+|+.-+-+..
T Consensus       311 ~-~aDiVi~~~~t~~lI~~~~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          311 D-KGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             T-TCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred             h-cCCEEEECCChhhhcCHHHHhhcCCCcEEEEeCCCCc
Confidence            3 799999984 44677777766665 357787777765

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.68  E-value=0.0091  Score=59.83  Aligned_cols=115  Identities=20%  Similarity=0.261  Sum_probs=74.6

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|++. |.+..-  .+++               ...  ....+.++++. 
T Consensus       132 ~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~-dr~~~~--~~~~---------------~~~--~~~~~l~ell~-  190 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGV-NTTGHP--ADHF---------------HET--VAFTATADALA-  190 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE-ESSCCC--CTTC---------------SEE--EEGGGCHHHHH-
T ss_pred             CccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEE-CCCcch--hHhH---------------hhc--cccCCHHHHHh-
Confidence            55799999999999999999999999999999853 433210  0110               000  01123344543 


Q ss_pred             ccceeecccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eeccccc
Q 012750          327 ECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIYA  382 (457)
Q Consensus       327 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~la  382 (457)
                      +||+++-|..     .+.|+.+....++ -.+++.-+-+++ +.++ .+.|.+..|. ..=|+..
T Consensus       191 ~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~  255 (324)
T 3evt_A          191 TANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTE  255 (324)
T ss_dssp             HCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCS
T ss_pred             hCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCC
Confidence            7999987764     3456655555554 368899998884 4444 4688888775 3444443

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.65  E-value=0.003  Score=63.34  Aligned_cols=105  Identities=23%  Similarity=0.385  Sum_probs=69.9

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|++|++ .|.+..   +. +         ++      +  ....+.++++. +
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~d~~~~---~~-~---------~~------~--~~~~~l~ell~-~  198 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG-EDVFEI---KG-I---------ED------Y--CTQVSLDEVLE-K  198 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSSCC---CS-C---------TT------T--CEECCHHHHHH-H
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCCcc---HH-H---------Hh------c--cccCCHHHHHh-h
Confidence            458999999999999999999999999999884 454321   00 0         00      0  11123344554 7


Q ss_pred             cceeeccccC-----Cccccccccccc-ceEEEecCCCC-CCHH-HHHHHHhCCCe
Q 012750          328 CDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHP-TDPE-ADEILSKRGVT  375 (457)
Q Consensus       328 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p-~t~~-a~~iL~~rGI~  375 (457)
                      ||+++.|...     +.|+++....++ -.+++.-+-++ ++.+ -.+.|.+.+|.
T Consensus       199 aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~  254 (331)
T 1xdw_A          199 SDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLG  254 (331)
T ss_dssp             CSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             CCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCce
Confidence            9999987543     455555555554 36788888777 4443 35788888876

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.64  E-value=0.0081  Score=58.73  Aligned_cols=171  Identities=16%  Similarity=0.146  Sum_probs=95.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV  330 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI  330 (457)
                      ..++|.|+|+|++|..+++.|.+.|.+|+ +.|.+          .+.+.+..+. |...     ..-+..+++ .+||+
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~-~~dr~----------~~~~~~~~~~-g~~~-----~~~~~~e~~-~~aDv   67 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTW-GADLN----------PQACANLLAE-GACG-----AAASAREFA-GVVDA   67 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHT-TCSE-----EESSSTTTT-TTCSE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEE-EEECC----------HHHHHHHHHc-CCcc-----ccCCHHHHH-hcCCE
Confidence            34689999999999999999999999987 45553          3444444332 2110     012344444 37999


Q ss_pred             eeccccCCcccc-------cccccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCc----------ee-
Q 012750          331 LIPCALGGVLKR-------ENAADV-KAKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGV----------TV-  389 (457)
Q Consensus       331 liPaA~~~~It~-------~na~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGV----------i~-  389 (457)
                      ++-|.......+       +-.+.+ +-++|+..++.+.  +.+..+.+.++|+.++.-  .-+|+.          ++ 
T Consensus        68 vi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~--pv~g~~~~a~~g~l~~~~g  145 (303)
T 3g0o_A           68 LVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDA--PVSGGAVKAAQGEMTVMAS  145 (303)
T ss_dssp             EEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC--CEESCHHHHHTTCEEEEEE
T ss_pred             EEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeC--CCCCChhhhhcCCeEEEeC
Confidence            999876542221       122333 3467887776542  234456788899887642  122332          11 


Q ss_pred             ---hhHHHhhhcc-----cC-C----CCHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012750          390 ---SYFEWVQNIQ-----GF-M----WEEDK----VNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTL  441 (457)
Q Consensus       390 ---S~~E~~qn~~-----~~-~----w~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  441 (457)
                         ..+|.++.+-     .. .    ....+    ++..+...+...+.+.+..+++.|+++.+...++
T Consensus       146 g~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~  214 (303)
T 3g0o_A          146 GSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVV  214 (303)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence               1233333221     00 0    11111    1222333344556777788888999887766554

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.63  E-value=0.0048  Score=61.95  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=70.9

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe-ecCCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD-SMEPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~-~i~~~ell~  325 (457)
                      +.++.|+||.|+|+|++|+.+|+.|...|.+|++ .|.+..  ...+                  +.... ..+.++++ 
T Consensus       135 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~-~dr~~~--~~~~------------------~~~~~~~~~l~ell-  192 (324)
T 3hg7_A          135 YQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLG-VSRSGR--ERAG------------------FDQVYQLPALNKML-  192 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSSCC--CCTT------------------CSEEECGGGHHHHH-
T ss_pred             CcccccceEEEEEECHHHHHHHHHHHhCCCEEEE-EcCChH--Hhhh------------------hhcccccCCHHHHH-
Confidence            4569999999999999999999999999999984 344320  0000                  00000 11223444 


Q ss_pred             cccceeecccc-----CCccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCCe
Q 012750          326 HECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPE-ADEILSKRGVT  375 (457)
Q Consensus       326 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~~-a~~iL~~rGI~  375 (457)
                      .+|||++-|..     .+.|+.+....++ -.+++.-+-+++ ..+ -.+.|.++.|.
T Consensus       193 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  250 (324)
T 3hg7_A          193 AQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG  250 (324)
T ss_dssp             HTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSS
T ss_pred             hhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCce
Confidence            37999987764     3456666666554 468899998884 443 35688888774

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.62  E-value=0.0066  Score=64.33  Aligned_cols=108  Identities=15%  Similarity=0.204  Sum_probs=71.7

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc
Q 012750          245 EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL  324 (457)
Q Consensus       245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell  324 (457)
                      ..|..+.|++|.|+|+|+||+.+|+.|...|++|+ +.|.+          +....+....        +.+..+.++++
T Consensus       270 ~~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~-v~d~~----------~~~~~~a~~~--------G~~~~~l~ell  330 (494)
T 3d64_A          270 ATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVW-VTEID----------PICALQAAME--------GYRVVTMEYAA  330 (494)
T ss_dssp             HHCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECSC----------HHHHHHHHTT--------TCEECCHHHHT
T ss_pred             ccccccCCCEEEEEccCHHHHHHHHHHHHCCCEEE-EEeCC----------hHhHHHHHHc--------CCEeCCHHHHH
Confidence            45778999999999999999999999999999988 45543          2222121111        22223334454


Q ss_pred             ccccceeeccc-cCCccccccccccc-ceEEEecCCCCC--CHHHHHHHHhC
Q 012750          325 AHECDVLIPCA-LGGVLKRENAADVK-AKFIIEAANHPT--DPEADEILSKR  372 (457)
Q Consensus       325 ~~~~DIliPaA-~~~~It~~na~~i~-akiIvEgAN~p~--t~~a~~iL~~r  372 (457)
                      . .+||++-|. ..+.|+.+....+| -.+|+.-+-+++  ..++-+.|.+.
T Consensus       331 ~-~aDiVi~~~~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL~AL~~g  381 (494)
T 3d64_A          331 D-KADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWE  381 (494)
T ss_dssp             T-TCSEEEECSSSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGGTTSEEE
T ss_pred             h-cCCEEEECCCcccccCHHHHhhCCCCcEEEEcCCCcchhchHHHHhhhcC
Confidence            3 799999985 34677777766665 367788887765  44433444443

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.56  E-value=0.0063  Score=61.52  Aligned_cols=113  Identities=21%  Similarity=0.250  Sum_probs=74.3

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.+..       +  .    .+  .      ..+..+.++++ .
T Consensus       143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~-~d~~~~-------~--~----~~--~------~~~~~~l~ell-~  199 (343)
T 2yq5_A          143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIA-YDVAYN-------P--E----FE--P------FLTYTDFDTVL-K  199 (343)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSSCC-------G--G----GT--T------TCEECCHHHHH-H
T ss_pred             ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEE-ECCChh-------h--h----hh--c------cccccCHHHHH-h
Confidence            4468999999999999999999999999999984 444321       0  0    00  0      11222344554 3


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCCe-Eeccccc
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPE-ADEILSKRGVT-ILPDIYA  382 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~-a~~iL~~rGI~-viPD~la  382 (457)
                      +|||++-|...     +.|+.+....++ -.+++.-+-+++ ..+ -.+.|.+..|. ..=|+..
T Consensus       200 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~  264 (343)
T 2yq5_A          200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLA  264 (343)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCT
T ss_pred             cCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccc
Confidence            79999888753     455555555554 368898888884 433 35788888774 3444443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.55  E-value=0.003  Score=62.24  Aligned_cols=169  Identities=12%  Similarity=0.107  Sum_probs=96.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      +||.++|+|++|..+|+.|.+.|++|+ +.|.+-          +.+.++.+.        +++.. ++.|+. .+|||+
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~-v~dr~~----------~~~~~l~~~--------G~~~~~s~~e~~-~~~dvv   65 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELV-VWNRTA----------SKAEPLTKL--------GATVVENAIDAI-TPGGIV   65 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EC-----------------CTTTTT--------TCEECSSGGGGC-CTTCEE
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEE-EEeCCH----------HHHHHHHHc--------CCeEeCCHHHHH-hcCCce
Confidence            579999999999999999999999987 556532          222222211        23332 334444 478999


Q ss_pred             eccccCCccc-----ccccccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEeccccc------ccCC--cee----hh
Q 012750          332 IPCALGGVLK-----RENAADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPDIYA------NSGG--VTV----SY  391 (457)
Q Consensus       332 iPaA~~~~It-----~~na~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~la------NaGG--Vi~----S~  391 (457)
                      +-|-......     .+-+..+ +-++|++..+..  .+.+..+.+.++|+.++=--+.      ..|-  +.+    ..
T Consensus        66 i~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~  145 (297)
T 4gbj_A           66 FSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGA  145 (297)
T ss_dssp             EECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHH
T ss_pred             eeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhH
Confidence            8775433222     1112222 346888877764  3556667899999988633221      1111  111    22


Q ss_pred             HHHhhhc----c--cCCCC----H----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012750          392 FEWVQNI----Q--GFMWE----E----DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTL  441 (457)
Q Consensus       392 ~E~~qn~----~--~~~w~----~----e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  441 (457)
                      ||-++.+    .  -+++-    .    +-++..+...+...+.+.+..+++.|+++.+...++
T Consensus       146 ~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l  209 (297)
T 4gbj_A          146 KERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEML  209 (297)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            3332221    0  01111    1    233455666667777888889999999988765543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.53  E-value=0.018  Score=56.51  Aligned_cols=130  Identities=15%  Similarity=0.137  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD  311 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~  311 (457)
                      +.|...+++    ..+.+++++++.|.|.|.+|+.++..|.+.|++-|.|.+.+          .++..+..++-+.  .
T Consensus       111 ~~G~~~~l~----~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~----------~~~a~~la~~~~~--~  174 (283)
T 3jyo_A          111 VSGFGRGME----EGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------TSRAQALADVINN--A  174 (283)
T ss_dssp             HHHHHHHHH----HHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS----------HHHHHHHHHHHHH--H
T ss_pred             HHHHHHHHH----HhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC----------HHHHHHHHHHHHh--h
Confidence            566665554    45678999999999999999999999999999433377764          3333333222110  0


Q ss_pred             CCC--CeecCCCcccc--cccceeeccccCCccccc----ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEec
Q 012750          312 FDG--GDSMEPSELLA--HECDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP  378 (457)
Q Consensus       312 ~~~--~~~i~~~ell~--~~~DIliPaA~~~~It~~----na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viP  378 (457)
                      +++  ....+.+++-+  .++||+|-|+.-+.-...    ....+ +..+|.+-.-+|. |+=. +.-+++|..+++
T Consensus       175 ~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~ll-~~A~~~G~~~~~  250 (283)
T 3jyo_A          175 VGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELL-KAARALGCETLD  250 (283)
T ss_dssp             HTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCCSSSSCHHH-HHHHHHTCCEEC
T ss_pred             cCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecCCCCCCHHH-HHHHHCcCeEeC
Confidence            111  11222233322  379999977653321111    11223 3468899999994 6643 344567876544

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.51  E-value=0.021  Score=57.20  Aligned_cols=108  Identities=17%  Similarity=0.160  Sum_probs=68.5

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+.        +.+...    +.+       ....+.++++ .
T Consensus       145 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~~--------~~~~~~----~~g-------~~~~~l~~~l-~  203 (334)
T 2dbq_A          145 GYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL-YYSRTR--------KEEVER----ELN-------AEFKPLEDLL-R  203 (334)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC--------CHHHHH----HHC-------CEECCHHHHH-H
T ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEE-EECCCc--------chhhHh----hcC-------cccCCHHHHH-h
Confidence            356999999999999999999999999999987 445432        111111    111       1221223444 3


Q ss_pred             ccceeeccccCCc-----cccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCCe
Q 012750          327 ECDVLIPCALGGV-----LKRENAADVK-AKFIIEAANHPT-DPE-ADEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~~~-----It~~na~~i~-akiIvEgAN~p~-t~~-a~~iL~~rGI~  375 (457)
                      +||+++-|...+.     ++.+..+.++ -.+++.-+.+++ +.+ -.+.|.+..|.
T Consensus       204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~  260 (334)
T 2dbq_A          204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIA  260 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence            8999998875543     3333333343 357788888874 433 34678886664

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.47  E-value=0.0059  Score=60.38  Aligned_cols=167  Identities=14%  Similarity=0.185  Sum_probs=99.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      ++|.++|.|++|+..|+.|.+.|+.|+ |.|.+          .+++.++.+.+        ++.. ++.|+ ...|||+
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~-v~dr~----------~~~~~~l~~~G--------a~~a~s~~e~-~~~~dvv   63 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLN-VFDLV----------QSAVDGLVAAG--------ASAARSARDA-VQGADVV   63 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHTT--------CEECSSHHHH-HTTCSEE
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEE-EEcCC----------HHHHHHHHHcC--------CEEcCCHHHH-HhcCCce
Confidence            479999999999999999999999987 55552          55555555432        2222 23333 3478999


Q ss_pred             eccccCC-----ccccc--cccccc-ceEEEecCCCC--CCHHHHHHHHhCCCeEecccccccCCce----------e--
Q 012750          332 IPCALGG-----VLKRE--NAADVK-AKFIIEAANHP--TDPEADEILSKRGVTILPDIYANSGGVT----------V--  389 (457)
Q Consensus       332 iPaA~~~-----~It~~--na~~i~-akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~laNaGGVi----------~--  389 (457)
                      +-|-...     ++...  -++.++ -++|++..+..  .+.+..+.+.++|+.|+=--  -+||+.          +  
T Consensus        64 ~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaP--VsGg~~~A~~G~L~imvGG  141 (300)
T 3obb_A           64 ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAP--VSGGTAGAAAGTLTFMVGG  141 (300)
T ss_dssp             EECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECC--EESCHHHHHHTCEEEEEES
T ss_pred             eecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecC--CCCCHHHHHhCCEEEEEeC
Confidence            8885432     22222  122333 47899888875  35666788999999886211  123321          1  


Q ss_pred             --hhHHHhhhcc-----cCCC----C----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012750          390 --SYFEWVQNIQ-----GFMW----E----EDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTL  441 (457)
Q Consensus       390 --S~~E~~qn~~-----~~~w----~----~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  441 (457)
                        ..||-++.+-     ...+    -    -+-++..+...+...+.+.+..+++.|+++.....++
T Consensus       142 ~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl  208 (300)
T 3obb_A          142 DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIM  208 (300)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence              2233322210     0000    0    1223455555666777788888888998887665443

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.45  E-value=0.026  Score=56.72  Aligned_cols=111  Identities=16%  Similarity=0.153  Sum_probs=71.5

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+..     -.               .   +.... +.++++ 
T Consensus       159 ~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~-~~dr~~~-----~~---------------~---g~~~~~~l~ell-  213 (333)
T 3ba1_A          159 TTKFSGKRVGIIGLGRIGLAVAERAEAFDCPIS-YFSRSKK-----PN---------------T---NYTYYGSVVELA-  213 (333)
T ss_dssp             CCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEE-EECSSCC-----TT---------------C---CSEEESCHHHHH-
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EECCCch-----hc---------------c---CceecCCHHHHH-
Confidence            457999999999999999999999999999987 4554321     00               0   11111 223344 


Q ss_pred             cccceeeccccCC-----ccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCCe-Eeccccc
Q 012750          326 HECDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHPT-D-PEADEILSKRGVT-ILPDIYA  382 (457)
Q Consensus       326 ~~~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t-~~a~~iL~~rGI~-viPD~la  382 (457)
                      .+||+++-|...+     .|+.+....++ -.+++.-+.++. + .+-.+.|.+.+|. ..-|+..
T Consensus       214 ~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~  279 (333)
T 3ba1_A          214 SNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE  279 (333)
T ss_dssp             HTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred             hcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence            3799998887543     44433334443 358888888874 3 4445688887774 3445543

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.44  E-value=0.016  Score=58.43  Aligned_cols=112  Identities=18%  Similarity=0.244  Sum_probs=63.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      |.++.|+++.|+|+|++|+.+|+.|...|.+|+ +.|.+..    ..                  . +.... +.++++ 
T Consensus       166 ~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~-~~dr~~~----~~------------------~-~~~~~~sl~ell-  220 (340)
T 4dgs_A          166 GHSPKGKRIGVLGLGQIGRALASRAEAFGMSVR-YWNRSTL----SG------------------V-DWIAHQSPVDLA-  220 (340)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECSSCC----TT------------------S-CCEECSSHHHHH-
T ss_pred             cccccCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCCcc----cc------------------c-CceecCCHHHHH-
Confidence            467999999999999999999999999999987 4454321    00                  0 01111 233444 


Q ss_pred             cccceeecccc-----CCccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCCe-Eecccccc
Q 012750          326 HECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-D-PEADEILSKRGVT-ILPDIYAN  383 (457)
Q Consensus       326 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t-~~a~~iL~~rGI~-viPD~laN  383 (457)
                      .+||+++-|..     .+.|+++....++ -.+++.-+.+++ + .+-.+.|.+..|. ..=|+..+
T Consensus       221 ~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~  287 (340)
T 4dgs_A          221 RDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVN  287 (340)
T ss_dssp             HTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSS
T ss_pred             hcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCC
Confidence            37899988765     3445555555554 368888888885 3 3334678777764 34444433

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.44  E-value=0.029  Score=54.53  Aligned_cols=131  Identities=17%  Similarity=0.163  Sum_probs=77.7

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      -++.|+..+++.    .+.+++++++.|.|.|.+|+.+++.|.+.| +|+ |+|++          .+.+.+..++-+..
T Consensus       110 Td~~G~~~~L~~----~~~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~-v~~r~----------~~~~~~l~~~~~~~  173 (287)
T 1nvt_A          110 TDGIGARMALEE----EIGRVKDKNIVIYGAGGAARAVAFELAKDN-NII-IANRT----------VEKAEALAKEIAEK  173 (287)
T ss_dssp             CHHHHHHHHHHH----HHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEE-EECSS----------HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH----hCCCcCCCEEEEECchHHHHHHHHHHHHCC-CEE-EEECC----------HHHHHHHHHHHhhh
Confidence            477888777653    467899999999999999999999999999 877 67764          23333322211000


Q ss_pred             ccCC---CCeecCCCcccccccceeeccccCCcccc---c---ccccc-cceEEEecCCCC-CCHHHHHHHHhCCCeEec
Q 012750          310 KDFD---GGDSMEPSELLAHECDVLIPCALGGVLKR---E---NAADV-KAKFIIEAANHP-TDPEADEILSKRGVTILP  378 (457)
Q Consensus       310 ~~~~---~~~~i~~~ell~~~~DIliPaA~~~~It~---~---na~~i-~akiIvEgAN~p-~t~~a~~iL~~rGI~viP  378 (457)
                      ....   .....+..+.+ .++||+|-|+.-.....   .   ..+.+ ...+|++-.-+| .|+- .+..+++|+.+++
T Consensus       174 ~~~~~~~~~d~~~~~~~~-~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~p~~t~l-l~~a~~~G~~~~~  251 (287)
T 1nvt_A          174 LNKKFGEEVKFSGLDVDL-DGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVL-LKEAKKVNAKTIN  251 (287)
T ss_dssp             HTCCHHHHEEEECTTCCC-TTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHH-HHHHHTTTCEEEC
T ss_pred             cccccceeEEEeeHHHhh-CCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeeeCCccCHH-HHHHHHCCCEEeC
Confidence            0000   00001112222 37899999986443210   0   12234 346788887667 4553 3456788887553

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.43  E-value=0.0073  Score=59.75  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=70.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC  328 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~  328 (457)
                      .+.++|.|+|.|++|..+++.|.+.|.+|+ +.|.+          .+.+.+..+.        +.... +.++++ .+|
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~-~~dr~----------~~~~~~l~~~--------g~~~~~~~~e~~-~~a   88 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQ-VWNRT----------PARAASLAAL--------GATIHEQARAAA-RDA   88 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHTT--------TCEEESSHHHHH-TTC
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEE-EEcCC----------HHHHHHHHHC--------CCEeeCCHHHHH-hcC
Confidence            466899999999999999999999999987 55552          4444444332        12222 223333 378


Q ss_pred             ceeeccccCCcccccc------cccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEec
Q 012750          329 DVLIPCALGGVLKREN------AADV-KAKFIIEAANHPT--DPEADEILSKRGVTILP  378 (457)
Q Consensus       329 DIliPaA~~~~It~~n------a~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viP  378 (457)
                      |+++-|........+-      .+.+ +-++|+...+.+.  +.+..+.+.++|+.++.
T Consensus        89 DvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~  147 (320)
T 4dll_A           89 DIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLD  147 (320)
T ss_dssp             SEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            9999887643222221      1223 3467887777652  34555678899998763

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.42  E-value=0.0091  Score=58.96  Aligned_cols=103  Identities=18%  Similarity=0.259  Sum_probs=69.4

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH  326 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~  326 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|++. |.+..     -.+                  ..+.. +.++++ .
T Consensus       118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~-dr~~~-----~~~------------------~~~~~~~l~ell-~  172 (290)
T 3gvx_A          118 TLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAY-TRSSV-----DQN------------------VDVISESPADLF-R  172 (290)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEE-CSSCC-----CTT------------------CSEECSSHHHHH-H
T ss_pred             eeeecchheeeccCchhHHHHHHHHhhCcEEEEE-ecccc-----ccc------------------cccccCChHHHh-h
Confidence            3589999999999999999999999999999853 44321     000                  01112 223444 3


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCCe
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DP-EADEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~-~a~~iL~~rGI~  375 (457)
                      +||+++-|...     +.|+.+....++ -.+++.-+-+++ +. +-.+.|.+++|.
T Consensus       173 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  229 (290)
T 3gvx_A          173 QSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDV  229 (290)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred             ccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccce
Confidence            78999877653     445555555554 468888888874 44 345788888775

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.37  E-value=0.029  Score=55.19  Aligned_cols=122  Identities=16%  Similarity=0.197  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      +.|...++    +..|.+++++++.|.|.|.+|+.++..|.+.|+ +|+ |.+++          .+...++.++-. ..
T Consensus       106 ~~G~~~~L----~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~-v~nRt----------~~ka~~La~~~~-~~  169 (282)
T 3fbt_A          106 YIGFGKML----SKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIY-VVTRN----------PEKTSEIYGEFK-VI  169 (282)
T ss_dssp             HHHHHHHH----HHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEE-EEESC----------HHHHHHHCTTSE-EE
T ss_pred             HHHHHHHH----HHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHhcC-cc
Confidence            56665554    456888999999999999999999999999999 554 77663          344444332210 00


Q ss_pred             cCCCCeecCCCcccccccceeeccccCCccccc-----ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEec
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKRE-----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP  378 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~-----na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viP  378 (457)
                      .|   +.+.  + +  ++||+|-|+.-+.-...     ....+ +..+|++-.-+|. |+= -+.-+++|..+++
T Consensus       170 ~~---~~l~--~-l--~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~l-l~~A~~~G~~~~~  235 (282)
T 3fbt_A          170 SY---DELS--N-L--KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVETLF-LKYARESGVKAVN  235 (282)
T ss_dssp             EH---HHHT--T-C--CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSCHH-HHHHHHTTCEEEC
T ss_pred             cH---HHHH--h-c--cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCCHH-HHHHHHCcCeEeC
Confidence            01   0111  2 3  89999987654322210     11123 3578999998884 553 4445678877654

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.37  E-value=0.0066  Score=60.58  Aligned_cols=108  Identities=17%  Similarity=0.204  Sum_probs=70.8

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|++.. .+..  ..+++               ..+.+  ..+.++++. 
T Consensus       134 ~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~d-r~~~--~~~~~---------------~~~~~--~~~l~ell~-  192 (315)
T 3pp8_A          134 EYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWS-RSRK--SWPGV---------------ESYVG--REELRAFLN-  192 (315)
T ss_dssp             CCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEE-SSCC--CCTTC---------------EEEES--HHHHHHHHH-
T ss_pred             CCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEc-CCch--hhhhh---------------hhhcc--cCCHHHHHh-
Confidence            346899999999999999999999999999999643 3221  01111               00100  012234443 


Q ss_pred             ccceeecccc-----CCccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCCe
Q 012750          327 ECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPE-ADEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~~-a~~iL~~rGI~  375 (457)
                      +|||++-|..     .+.|+.+....++ -.+++.-+.+++ ..+ -.+.|++..|.
T Consensus       193 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  249 (315)
T 3pp8_A          193 QTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLK  249 (315)
T ss_dssp             TCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCcc
Confidence            7899987754     3456665556564 478999999984 443 34688888775

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.37  E-value=0.045  Score=54.31  Aligned_cols=101  Identities=25%  Similarity=0.313  Sum_probs=65.9

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+.     +-..             + .+     .+.++++ .+
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~d~~~-----~~~~-------------~-~~-----~~l~ell-~~  193 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVV-YHARTP-----KPLP-------------Y-PF-----LSLEELL-KE  193 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC-----CSSS-------------S-CB-----CCHHHHH-HH
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEE-EECCCC-----cccc-------------c-cc-----CCHHHHH-hh
Confidence            46899999999999999999999999999987 445432     1000             0 01     1223444 37


Q ss_pred             cceeecccc-----CCccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCCe
Q 012750          328 CDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPE-ADEILSKRGVT  375 (457)
Q Consensus       328 ~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~~-a~~iL~~rGI~  375 (457)
                      ||+++-|..     .+.|+++....++ -.+++.-+.+++ +.+ ..+.|. ..|.
T Consensus       194 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~  248 (311)
T 2cuk_A          194 ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLF  248 (311)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSS
T ss_pred             CCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCC
Confidence            899988853     3455555555554 357888888874 443 356677 5553

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.36  E-value=0.0067  Score=60.89  Aligned_cols=106  Identities=22%  Similarity=0.233  Sum_probs=69.2

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+..   +. +               ..+  ....+.++++. 
T Consensus       140 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~d~~~~---~~-~---------------~~~--~~~~~l~ell~-  196 (333)
T 1dxy_A          140 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI-AYDPYPM---KG-D---------------HPD--FDYVSLEDLFK-  196 (333)
T ss_dssp             CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCC---SS-C---------------CTT--CEECCHHHHHH-
T ss_pred             ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCcc---hh-h---------------Hhc--cccCCHHHHHh-
Confidence            456899999999999999999999999999998 4444321   00 0               000  11223344453 


Q ss_pred             ccceeeccccCC-----ccccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCCe
Q 012750          327 ECDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHP-TDPEA-DEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p-~t~~a-~~iL~~rGI~  375 (457)
                      .||+++-|....     .|+++....++ -.+++.-+-++ ++.++ .+.|.+.+|.
T Consensus       197 ~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~  253 (333)
T 1dxy_A          197 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA  253 (333)
T ss_dssp             HCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred             cCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCcc
Confidence            899999887543     34444444454 36777777776 44443 4678887775

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.30  E-value=0.0047  Score=65.24  Aligned_cols=175  Identities=13%  Similarity=0.111  Sum_probs=105.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe-ecCCCccccc--c
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD-SMEPSELLAH--E  327 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~-~i~~~ell~~--~  327 (457)
                      ..++|.|+|.|++|..+|+.|.+.|.+|+ +.|.+          .+.+.+..+.. .. +. ... .-+.+++...  +
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~g-~~-g~-~i~~~~s~~e~v~~l~~   68 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVC-AFNRT----------VSKVDDFLANE-AK-GT-KVVGAQSLKEMVSKLKK   68 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------THHHHHHHHTT-TT-TS-SCEECSSHHHHHHTBCS
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHhcc-cC-CC-ceeccCCHHHHHhhccC
Confidence            34689999999999999999999999887 55653          23444433321 10 00 001 0133445432  6


Q ss_pred             cceeeccccCCccccccc----ccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCc---------ee--
Q 012750          328 CDVLIPCALGGVLKRENA----ADV-KAKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGV---------TV--  389 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na----~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGV---------i~--  389 (457)
                      +|+++-|-..+...++.+    +.+ +-++|+.+.|...  |.+..+.|.++|+.++.-  .-+||.         ++  
T Consensus        69 aDvVil~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~--pVsGg~~gA~~G~~im~GG  146 (484)
T 4gwg_A           69 PRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGS--GVSGGEEGARYGPSLMPGG  146 (484)
T ss_dssp             SCEEEECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE--EEESHHHHHHHCCEEEEEE
T ss_pred             CCEEEEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccC--CccCCHHHHhcCCeeecCC
Confidence            899988866543332222    333 4579999999873  445557899999987753  222322         11  


Q ss_pred             --hhHHHhhhc----cc-C-------CCC--------HHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHH
Q 012750          390 --SYFEWVQNI----QG-F-------MWE--------EDKVNNELRRYMIRAFHNIKGMCQT-HNCNLRMGAFTL  441 (457)
Q Consensus       390 --S~~E~~qn~----~~-~-------~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~  441 (457)
                        ..+|.++.+    .. .       .|-        -.-++.-++..+...+.+.+..+++ .|+++.+.+.++
T Consensus       147 ~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~  221 (484)
T 4gwg_A          147 NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAF  221 (484)
T ss_dssp             CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence              223333322    00 0       111        1234566667778888899999998 999988776654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.25  E-value=0.0046  Score=58.75  Aligned_cols=97  Identities=12%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHH--------------HHHhHhhcCCcc
Q 012750          245 EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHK--------------LLAHKDKTGSLK  310 (457)
Q Consensus       245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~--------------L~~~~~~~g~~~  310 (457)
                      ....++.+++|.|+|.|++|+.+|+.|.+.|..|+ +.|.+          .+.              +.++.++     
T Consensus        12 ~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~-~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~-----   75 (245)
T 3dtt_A           12 HENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVT-IGTRD----------PKATLARAEPDAMGAPPFSQWLPE-----   75 (245)
T ss_dssp             -------CCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESC----------HHHHHTCC-------CCHHHHGGG-----
T ss_pred             ccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC----------hhhhhhhhhhhhhcchhhhHHHhh-----
Confidence            34556889999999999999999999999999987 55653          222              2222221     


Q ss_pred             cCCCCeecCCCcccccccceeeccccCCcccc---cc-cccccceEEEecCCC
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKR---EN-AADVKAKFIIEAANH  359 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~---~n-a~~i~akiIvEgAN~  359 (457)
                       ++.....++.+.+ .+||++|-|.....+.+   +. .+.+.-++|+..+|+
T Consensus        76 -~~~~~~~~~~e~~-~~aDvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~  126 (245)
T 3dtt_A           76 -HPHVHLAAFADVA-AGAELVVNATEGASSIAALTAAGAENLAGKILVDIANP  126 (245)
T ss_dssp             -STTCEEEEHHHHH-HHCSEEEECSCGGGHHHHHHHHCHHHHTTSEEEECCCC
T ss_pred             -cCceeccCHHHHH-hcCCEEEEccCcHHHHHHHHHhhhhhcCCCEEEECCCC
Confidence             1111222233333 37999999876554321   11 223456799999985

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.24  E-value=0.037  Score=57.36  Aligned_cols=111  Identities=23%  Similarity=0.359  Sum_probs=73.5

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++.|+++.|+|+|++|+.+|+.|...|.+|++ .|.+...                   .   ..+.... +.++++ 
T Consensus       151 ~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-yd~~~~~-------------------~---~~~~~~~~sl~ell-  206 (416)
T 3k5p_A          151 SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRY-YDTSDKL-------------------Q---YGNVKPAASLDELL-  206 (416)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-ECTTCCC-------------------C---BTTBEECSSHHHHH-
T ss_pred             CccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEE-ECCcchh-------------------c---ccCcEecCCHHHHH-
Confidence            3568999999999999999999999999999983 4442100                   0   0011112 234444 


Q ss_pred             cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eecccc
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIY  381 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~l  381 (457)
                      ..||+++-|...     +.|+.+....+| -.+++.-|-+++ ..+| .+.|++..|. ..=|+.
T Consensus       207 ~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf  271 (416)
T 3k5p_A          207 KTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVF  271 (416)
T ss_dssp             HHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCC
T ss_pred             hhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCC
Confidence            379999877644     456555555554 478999999984 4433 4678877775 444543

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=96.19  E-value=0.013  Score=61.08  Aligned_cols=136  Identities=22%  Similarity=0.266  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEEC----CCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750          236 VYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSD----ITGAVKNADGIDIHKLLAHKDKTGS  308 (457)
Q Consensus       236 ~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD----~~G~iynp~GLDi~~L~~~~~~~g~  308 (457)
                      +.++..+++..|.++++++|+|.|.|..|+.+++.|.+.|+   +|+ |+|    ++|.++..+  +.+.+.+++.....
T Consensus       170 ~aG~~~AL~~~g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~-vvd~~~~R~G~~~~a~--~~~~L~~~~~~~a~  246 (439)
T 2dvm_A          170 LAGLLNALKVVGKKISEITLALFGAGAAGFATLRILTEAGVKPENVR-VVELVNGKPRILTSDL--DLEKLFPYRGWLLK  246 (439)
T ss_dssp             HHHHHHHHHHHTCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEE-EEEEETTEEEECCTTS--CHHHHSTTCHHHHT
T ss_pred             HHHHHHHHHHhCCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEE-EEEccCCCcCcccccc--chhHHHHHHHHHhh
Confidence            34556667777899999999999999999999999999998   565 888    877665432  21223222111000


Q ss_pred             cccCCCCeecCCCcccccccceeeccccC--Cccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCCeEe
Q 012750          309 LKDFDGGDSMEPSELLAHECDVLIPCALG--GVLKRENAADVK-AKFIIEAANHPTDPEADEILSKRGVTIL  377 (457)
Q Consensus       309 ~~~~~~~~~i~~~ell~~~~DIliPaA~~--~~It~~na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~vi  377 (457)
                      ..... ...-+-.+.+ .++||+|-|+..  +.++++....+. -.+|..-+|-.-|+-.++..+ +|..++
T Consensus       247 ~~~~~-~~~~~L~e~l-~~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDLynP~~t~~~~~A~~-~G~~iv  315 (439)
T 2dvm_A          247 KTNGE-NIEGGPQEAL-KDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPLANPVPEILPEEAKK-AGARIV  315 (439)
T ss_dssp             TSCTT-CCCSSHHHHH-TTCSEEEECSCCCSSSSCHHHHTTSCTTCEEEECCSSSCSSCHHHHHH-HTCSEE
T ss_pred             ccccc-cccccHHHHh-ccCCEEEEcCCCccCCCChHHHHhcCCCCEEEECCCCCCcchHHHHHH-cCCeEE
Confidence            00000 0000111222 268999999987  888876555453 358899976433444333333 366554

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.18  E-value=0.037  Score=55.23  Aligned_cols=133  Identities=17%  Similarity=0.146  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      -+.|...+++    ..+.+++|+++.|.|.|.+|+.++..|.+.|+ +|+ |.+++.       =+.+...+..++-+. 
T Consensus       137 D~~Gf~~~L~----~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~-i~nR~~-------~~~~~a~~la~~~~~-  203 (315)
T 3tnl_A          137 DGTGYMRALK----EAGHDIIGKKMTICGAGGAATAICIQAALDGVKEIS-IFNRKD-------DFYANAEKTVEKINS-  203 (315)
T ss_dssp             HHHHHHHHHH----HTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEE-EEECSS-------TTHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHH----HcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEE-EEECCC-------chHHHHHHHHHHhhh-
Confidence            3667666554    46889999999999999999999999999999 555 776642       113444433322110 


Q ss_pred             ccCC-CCeecCCCc---ccc--cccceeeccccCCcccc---c---ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCe
Q 012750          310 KDFD-GGDSMEPSE---LLA--HECDVLIPCALGGVLKR---E---NAADV-KAKFIIEAANHPT-DPEADEILSKRGVT  375 (457)
Q Consensus       310 ~~~~-~~~~i~~~e---ll~--~~~DIliPaA~~~~It~---~---na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~  375 (457)
                       .++ ....++-++   +-+  .++||+|-|+.-+.-..   .   ....+ +..+|++-.-+|. |+= -+.-+++|..
T Consensus       204 -~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~~T~l-l~~A~~~G~~  281 (315)
T 3tnl_A          204 -KTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRL-LEIAEEQGCQ  281 (315)
T ss_dssp             -HSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSSSCHH-HHHHHHTTCE
T ss_pred             -hcCCceEEeccchHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCCCCHH-HHHHHHCCCe
Confidence             010 011111111   211  27999997764332211   1   12224 3468899999994 653 3445678876


Q ss_pred             Eec
Q 012750          376 ILP  378 (457)
Q Consensus       376 viP  378 (457)
                      +++
T Consensus       282 ~~~  284 (315)
T 3tnl_A          282 TLN  284 (315)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            544

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.15  E-value=0.0075  Score=63.47  Aligned_cols=176  Identities=15%  Similarity=0.109  Sum_probs=101.6

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc-
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH-  326 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~-  326 (457)
                      .+..++|.|+|.|++|+.+|+.|.+.|.+|+ +.|.+          .+.+.+..++.+   + .+.... +++++... 
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~-v~~r~----------~~~~~~l~~~~~---~-~gi~~~~s~~e~v~~l   76 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVS-IFNRS----------REKTEEVIAENP---G-KKLVPYYTVKEFVESL   76 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEE-EECSS----------HHHHHHHHHHST---T-SCEEECSSHHHHHHTB
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEE-EEeCC----------HHHHHHHHhhCC---C-CCeEEeCCHHHHHhCC
Confidence            3677899999999999999999999999876 55542          444444444321   0 111111 23344432 


Q ss_pred             -ccceeeccccCCccccccc----cccc-ceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCce---------e
Q 012750          327 -ECDVLIPCALGGVLKRENA----ADVK-AKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGVT---------V  389 (457)
Q Consensus       327 -~~DIliPaA~~~~It~~na----~~i~-akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGVi---------~  389 (457)
                       +||+++-|-..+....+.+    +.++ -++|+..+|+..  |.+-.+.|.++|+.++.-  .++||..         +
T Consensus        77 ~~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~--pv~gg~~~a~~g~~i~~  154 (480)
T 2zyd_A           77 ETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGT--GVSGGEEGALKGPSIMP  154 (480)
T ss_dssp             CSSCEEEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE--EEESHHHHHHHCCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCC--ccccCHhHHhcCCeEEe
Confidence             4999988866543333222    3343 479999999863  344567888999988732  3333321         1


Q ss_pred             ----hhHHHhhhc----cc--------CCCC-H-------HHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHH
Q 012750          390 ----SYFEWVQNI----QG--------FMWE-E-------DKVNNELRRYMIRAFHNIKGMCQT-HNCNLRMGAFTL  441 (457)
Q Consensus       390 ----S~~E~~qn~----~~--------~~w~-~-------e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~  441 (457)
                          ..+|.++.+    ..        ..|- +       .-++..+...+.+.+.+.+..+++ .|+++.+...+.
T Consensus       155 gg~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~  231 (480)
T 2zyd_A          155 GGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTF  231 (480)
T ss_dssp             ESCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence                123333322    11        1111 1       112333455567777888888888 699887766544

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.14  E-value=0.0072  Score=58.48  Aligned_cols=168  Identities=14%  Similarity=0.128  Sum_probs=93.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      ++|.|+|.|++|..+++.|.+.|.+|+ +.|.+-          +.+.+..+.        +.... +..+++ .+||++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~-~~dr~~----------~~~~~~~~~--------g~~~~~~~~~~~-~~aDvv   61 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVT-IWNRSP----------EKAEELAAL--------GAERAATPCEVV-ESCPVT   61 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSG----------GGGHHHHHT--------TCEECSSHHHHH-HHCSEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEE-EEcCCH----------HHHHHHHHC--------CCeecCCHHHHH-hcCCEE
Confidence            689999999999999999999999987 556532          222222221        12222 223333 378999


Q ss_pred             eccccCCccccccc-------ccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCc----------ee--
Q 012750          332 IPCALGGVLKRENA-------ADV-KAKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGV----------TV--  389 (457)
Q Consensus       332 iPaA~~~~It~~na-------~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGV----------i~--  389 (457)
                      +-|.....-.++.+       +.+ +-++|+.-.+.+.  +.+..+.+.++|+.++.--  -+||.          ++  
T Consensus        62 i~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~p--v~g~~~~a~~g~l~~~~gg  139 (287)
T 3pef_A           62 FAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAP--VSGSKKPAEDGTLIILAAG  139 (287)
T ss_dssp             EECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECC--EECCHHHHHHTCEEEEEEE
T ss_pred             EEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECC--CcCCHHHHhcCCEEEEEeC
Confidence            98866432222222       223 3467777766542  3444567889999876311  22222          11  


Q ss_pred             --hhHHHhhhcc-----c-CC---CCHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750          390 --SYFEWVQNIQ-----G-FM---WEEDKV----NNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG  442 (457)
Q Consensus       390 --S~~E~~qn~~-----~-~~---w~~e~v----~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  442 (457)
                        ..+|.++.+-     . ..   ....+.    +..+...+...+.+.+..+++.|+++.+..-.+.
T Consensus       140 ~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~  207 (287)
T 3pef_A          140 DRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIG  207 (287)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence              1223333220     0 00   111111    2222333344677788888999999887766654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.10  E-value=0.0022  Score=62.74  Aligned_cols=167  Identities=20%  Similarity=0.198  Sum_probs=93.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccce
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDV  330 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DI  330 (457)
                      .++|.|+|.|++|..+|+.|.+.|.+|+ +.|.+-     +-  .+.+.   +.        +.... +.+++..  ||+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~-~~dr~~-----~~--~~~~~---~~--------g~~~~~~~~~~~~--aDv   73 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVT-VYDIRI-----EA--MTPLA---EA--------GATLADSVADVAA--ADL   73 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEE-EECSST-----TT--SHHHH---HT--------TCEECSSHHHHTT--SSE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEeCCH-----HH--HHHHH---HC--------CCEEcCCHHHHHh--CCE
Confidence            3689999999999999999999999987 556532     21  22222   21        12222 3345665  999


Q ss_pred             eeccccCCcccccc----cccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCc----------ee----
Q 012750          331 LIPCALGGVLKREN----AADV-KAKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGV----------TV----  389 (457)
Q Consensus       331 liPaA~~~~It~~n----a~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGV----------i~----  389 (457)
                      ++-|.......++.    .+.+ +-++|+...+.+.  +.+..+.+.++|+.++.--  -+|+.          ++    
T Consensus        74 vi~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~p--v~g~~~~a~~g~l~~~~gg~~  151 (296)
T 3qha_A           74 IHITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAP--VSGGAAAAARGELATMVGADR  151 (296)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECC--EESCHHHHHHTCEEEEEECCH
T ss_pred             EEEECCChHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCC--CcCCHHHHhcCCccEEecCCH
Confidence            99887643222221    2223 3367887777652  3445567888899876221  11211          11    


Q ss_pred             hhHHHhhhcc-----cCC----CCHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012750          390 SYFEWVQNIQ-----GFM----WEED----KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTL  441 (457)
Q Consensus       390 S~~E~~qn~~-----~~~----w~~e----~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  441 (457)
                      ..+|.++.+-     ...    ....    -++..+...+...+.+.+..+++.|+++.+.+-+.
T Consensus       152 ~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~  216 (296)
T 3qha_A          152 EVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVV  216 (296)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhc
Confidence            1223332220     000    0111    12233333344557788888899999988874443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.08  E-value=0.0049  Score=52.90  Aligned_cols=105  Identities=15%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc----cc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AH  326 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell----~~  326 (457)
                      +.++|+|.|+|.+|+.+++.|.+.|.+|+. .|.          |.+.+.+..+..-.+. +  +. .+..+.+    -.
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~-id~----------~~~~~~~~~~~~~~~~-~--gd-~~~~~~l~~~~~~   69 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLA-VDK----------SKEKIELLEDEGFDAV-I--AD-PTDESFYRSLDLE   69 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEE-EES----------CHHHHHHHHHTTCEEE-E--CC-TTCHHHHHHSCCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEE-EEC----------CHHHHHHHHHCCCcEE-E--CC-CCCHHHHHhCCcc
Confidence            456899999999999999999999999984 454          2444444433211110 0  00 1122222    13


Q ss_pred             ccceeeccccCCccc---ccccccc-cceEEEecCCCCCCHHHHHHHHhCCC
Q 012750          327 ECDVLIPCALGGVLK---RENAADV-KAKFIIEAANHPTDPEADEILSKRGV  374 (457)
Q Consensus       327 ~~DIliPaA~~~~It---~~na~~i-~akiIvEgAN~p~t~~a~~iL~~rGI  374 (457)
                      ++|++|-|......+   ...+.++ ..++|+-..    +++..+.|.+.|+
T Consensus        70 ~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~~----~~~~~~~l~~~G~  117 (141)
T 3llv_A           70 GVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVS----SPKKKEEFEEAGA  117 (141)
T ss_dssp             TCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEES----CGGGHHHHHHTTC
T ss_pred             cCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEEc----ChhHHHHHHHcCC
Confidence            789988776532222   2223332 345666432    3445667888887

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.07  E-value=0.0083  Score=51.88  Aligned_cols=104  Identities=14%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc----ccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA----HEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~----~~~  328 (457)
                      .+|+|.|+|.+|+.+++.|.+.|..|+. .|.          |.+.+.+..+. +.-.-+.+   .+..+.|.    .++
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~v-id~----------~~~~~~~~~~~-g~~~i~gd---~~~~~~l~~a~i~~a   72 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVV-IET----------SRTRVDELRER-GVRAVLGN---AANEEIMQLAHLECA   72 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEE-EES----------CHHHHHHHHHT-TCEEEESC---TTSHHHHHHTTGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEE-EEC----------CHHHHHHHHHc-CCCEEECC---CCCHHHHHhcCcccC
Confidence            4799999999999999999999999984 454          24455444332 21100001   12223332    378


Q ss_pred             ceeeccccCCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCCe
Q 012750          329 DVLIPCALGGVLKR---ENAADV--KAKFIIEAANHPTDPEADEILSKRGVT  375 (457)
Q Consensus       329 DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~~a~~iL~~rGI~  375 (457)
                      |++|-|...+..+.   ..+.++  ..++|+-.    .+++..+.|++-|+-
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~----~~~~~~~~l~~~G~d  120 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIARA----HYDDEVAYITERGAN  120 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEE----SSHHHHHHHHHTTCS
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEEEE----CCHHHHHHHHHCCCC
Confidence            99988765443222   233333  45788744    356677889999984

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=96.06  E-value=0.0088  Score=59.96  Aligned_cols=174  Identities=21%  Similarity=0.208  Sum_probs=95.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC--------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHER--------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL  323 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~--------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~el  323 (457)
                      ..+|+|.|+|+||+.+++.|.+.        +.+|++|+|++.....+. +|.+...+.+.. +.+..+.. ...+.+++
T Consensus         6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~d~~~l   82 (331)
T 3c8m_A            6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNER-IDIGKVISYKEK-GSLDSLEY-ESISASEA   82 (331)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTT-CCHHHHHHHHHT-TCGGGCCS-EECCHHHH
T ss_pred             EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcc-cChHHHhhhhcc-CCcccccC-CCCCHHHH
Confidence            46899999999999999998764        479999999988777665 776665443322 22211110 01134566


Q ss_pred             cccccceeeccccCC---ccccccccc-c--cceEEEecCCC-CCCHHHHH---HHHhCCCeEecccccccC-CceehhH
Q 012750          324 LAHECDVLIPCALGG---VLKRENAAD-V--KAKFIIEAANH-PTDPEADE---ILSKRGVTILPDIYANSG-GVTVSYF  392 (457)
Q Consensus       324 l~~~~DIliPaA~~~---~It~~na~~-i--~akiIvEgAN~-p~t~~a~~---iL~~rGI~viPD~laNaG-GVi~S~~  392 (457)
                      ++.++|+++.|+..+   ....+.+.+ +  +.-+|++  |- |+..++++   .-+++|+.+.=+...-+| .++...-
T Consensus        83 l~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvta--nK~pla~~~~eL~~~A~~~gv~~~~ea~vg~giPii~~l~  160 (331)
T 3c8m_A           83 LARDFDIVVDATPASADGKKELAFYKETFENGKDVVTA--NKSGLANFWPEIMEYARSNNRRIRYEATVAGGVPLFSFID  160 (331)
T ss_dssp             HHSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEEC--CCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHHH
T ss_pred             hCCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEec--CchhhHHHHHHHHHHHHHcCCEEEEEeecccccHHHHHHH
Confidence            656899999998765   112222222 2  3345652  32 33334443   445788766433222222 2233333


Q ss_pred             HHhhhc-----ccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750          393 EWVQNI-----QGF-MWEEDKVNNELRRYMIRAFHNIKGMCQTHNC  432 (457)
Q Consensus       393 E~~qn~-----~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  432 (457)
                      |++..-     .+. .=+-..+..++++  ...|.+++..|++.|.
T Consensus       161 ~~l~g~~I~~I~GI~nGT~nyil~~m~~--g~~f~~~l~eAq~~Gy  204 (331)
T 3c8m_A          161 YSVLPSRIKKFRGIVSLTINYFIRELAN--KREFDDVLSEATKLGI  204 (331)
T ss_dssp             HHSTTCCCCEEEEECCHHHHHHHHHHHT--TCCHHHHHHHHHHHTS
T ss_pred             HHhhcCcccEEEEEEeccceeEecchhc--CCCHHHHHHHHHHcCC
Confidence            333210     000 0011223333422  3468888889998774

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.02  E-value=0.009  Score=58.74  Aligned_cols=171  Identities=16%  Similarity=0.141  Sum_probs=94.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC  328 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~  328 (457)
                      .+-++|.|+|+|++|..+|+.|.+.|.+|+ +.|.+-          +.+.+..+.        +.... +..+++ .+|
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~-~~dr~~----------~~~~~l~~~--------g~~~~~~~~~~~-~~a   78 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVT-VWNRTL----------SKCDELVEH--------GASVCESPAEVI-KKC   78 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSG----------GGGHHHHHT--------TCEECSSHHHHH-HHC
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEE-EEeCCH----------HHHHHHHHC--------CCeEcCCHHHHH-HhC
Confidence            345789999999999999999999999887 556532          222222221        12222 223333 378


Q ss_pred             ceeeccccCCcccccc-------cccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCce----------
Q 012750          329 DVLIPCALGGVLKREN-------AADV-KAKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGVT----------  388 (457)
Q Consensus       329 DIliPaA~~~~It~~n-------a~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGVi----------  388 (457)
                      |+++-|.......++.       .+.+ +-++|+.-.+.+.  +.+..+.+.++|+.++.--+  +|+..          
T Consensus        79 Dvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv--~g~~~~a~~g~l~i~  156 (310)
T 3doj_A           79 KYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV--SGSKKPAEDGQLIIL  156 (310)
T ss_dssp             SEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE--ECCHHHHHHTCEEEE
T ss_pred             CEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCC--CCChhHHhcCCeEEE
Confidence            9999886543211111       2223 3467887776542  34455678899998764222  23221          


Q ss_pred             e----hhHHHhhhcc-----c-CC---CCHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750          389 V----SYFEWVQNIQ-----G-FM---WEEDK----VNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG  442 (457)
Q Consensus       389 ~----S~~E~~qn~~-----~-~~---w~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  442 (457)
                      +    ..+|.++.+-     . ..   ....+    ++..+...+...+.+.+..+++.|+++.+...++.
T Consensus       157 ~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~  227 (310)
T 3doj_A          157 AAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILD  227 (310)
T ss_dssp             EEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            1    1223332220     0 00   11111    12223333345567778888889999887766554

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.01  E-value=0.021  Score=56.52  Aligned_cols=102  Identities=17%  Similarity=0.187  Sum_probs=69.2

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccc
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC  328 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~  328 (457)
                      ++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+..   +.              + ..     ...+.++++. .|
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~dr~~~---~~--------------~-~~-----~~~~l~ell~-~a  175 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVR-GFSRTPK---EG--------------P-WR-----FTNSLEEALR-EA  175 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEE-EECSSCC---CS--------------S-SC-----CBSCSHHHHT-TC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEE-EECCCcc---cc--------------C-cc-----cCCCHHHHHh-hC
Confidence            5899999999999999999999999999988 4554331   00              0 00     1112344443 79


Q ss_pred             ceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCCe
Q 012750          329 DVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DP-EADEILSKRGVT  375 (457)
Q Consensus       329 DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~-~a~~iL~~rGI~  375 (457)
                      |+++-|...     +.|+++....++ -.+++.-+.+++ +. +..+.|.+..|.
T Consensus       176 DvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~  230 (303)
T 1qp8_A          176 RAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF  230 (303)
T ss_dssp             SEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred             CEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCce
Confidence            999888643     345555555554 468898888874 43 345678887764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.98  E-value=0.012  Score=52.90  Aligned_cols=110  Identities=15%  Similarity=0.167  Sum_probs=63.5

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--  324 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--  324 (457)
                      .++.+.+|+|.|+|.+|+.+++.|.+. |.+|++ .|.          |.+.+....+.+-.+. +.+   .++.+.+  
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~v-id~----------~~~~~~~~~~~g~~~~-~gd---~~~~~~l~~   99 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLG-IEI----------REEAAQQHRSEGRNVI-SGD---ATDPDFWER   99 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEE-EES----------CHHHHHHHHHTTCCEE-ECC---TTCHHHHHT
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEE-EEC----------CHHHHHHHHHCCCCEE-EcC---CCCHHHHHh
Confidence            356788999999999999999999998 999984 454          2344444333211111 000   0111222  


Q ss_pred             ---ccccceeeccccCCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCCeE
Q 012750          325 ---AHECDVLIPCALGGVLKR---ENAADV--KAKFIIEAANHPTDPEADEILSKRGVTI  376 (457)
Q Consensus       325 ---~~~~DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~~a~~iL~~rGI~v  376 (457)
                         -.++|++|-|......+.   ..+...  ..++|+-. |   +++..+.|.+.|+-.
T Consensus       100 ~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~---~~~~~~~l~~~G~~~  155 (183)
T 3c85_A          100 ILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIA-E---YPDQLEGLLESGVDA  155 (183)
T ss_dssp             BCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEE-S---SHHHHHHHHHHTCSE
T ss_pred             ccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEE-C---CHHHHHHHHHcCCCE
Confidence               126899987754332221   122222  34666643 2   355667888888743

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=95.95  E-value=0.024  Score=59.97  Aligned_cols=95  Identities=19%  Similarity=0.298  Sum_probs=60.0

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc
Q 012750          246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA  325 (457)
Q Consensus       246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~  325 (457)
                      .+..+.|++|.|+|+|.||+.+|+.|...|++|+ +.|.+          ...+...++. |       .+.++.++++ 
T Consensus       268 ~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Vi-v~d~~----------~~~~~~A~~~-G-------a~~~~l~e~l-  327 (494)
T 3ce6_A          268 TDALIGGKKVLICGYGDVGKGCAEAMKGQGARVS-VTEID----------PINALQAMME-G-------FDVVTVEEAI-  327 (494)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHT-T-------CEECCHHHHG-
T ss_pred             cCCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc-C-------CEEecHHHHH-
Confidence            3557899999999999999999999999999988 55552          3333322221 1       2222333444 


Q ss_pred             cccceeeccccC-Cccccccccccc-ceEEEecCCCC
Q 012750          326 HECDVLIPCALG-GVLKRENAADVK-AKFIIEAANHP  360 (457)
Q Consensus       326 ~~~DIliPaA~~-~~It~~na~~i~-akiIvEgAN~p  360 (457)
                      ..+|+++.|... +.|+.+....++ --+|+.-+..+
T Consensus       328 ~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          328 GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            379999999643 445544445443 23444444443

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.93  E-value=0.021  Score=55.91  Aligned_cols=123  Identities=17%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      -+.|...+++    ..+.+++++++.|.|.|.+|+.++..|.+.|+ +|+ |.+++..          ...       .+
T Consensus       100 D~~G~~~~L~----~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~-v~~R~~~----------~a~-------~l  157 (277)
T 3don_A          100 DGIGYVNGLK----QIYEGIEDAYILILGAGGASKGIANELYKIVRPTLT-VANRTMS----------RFN-------NW  157 (277)
T ss_dssp             HHHHHHHHHH----HHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCE-EECSCGG----------GGT-------TC
T ss_pred             hHHHHHHHHH----HhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEE-EEeCCHH----------HHH-------HH
Confidence            4667766554    45788999999999999999999999999999 555 7766421          111       11


Q ss_pred             ccCCCCeecCCCccc--ccccceeeccccCCcccc--c--ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEec
Q 012750          310 KDFDGGDSMEPSELL--AHECDVLIPCALGGVLKR--E--NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP  378 (457)
Q Consensus       310 ~~~~~~~~i~~~ell--~~~~DIliPaA~~~~It~--~--na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viP  378 (457)
                      ..  .....+-+++-  -.++||+|-|..-+.-..  .  ..+.+ ...+|++-.-+|. |+ --+..+++|+.+++
T Consensus       158 a~--~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~T~-ll~~A~~~G~~~~~  231 (277)
T 3don_A          158 SL--NINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKTP-ILIEAEQRGNPIYN  231 (277)
T ss_dssp             CS--CCEEECHHHHHHTGGGCSEEEECCC-------CCSSCCTTCCSSCEEEESCCSSSSCH-HHHHHHHTTCCEEC
T ss_pred             HH--hcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecCCCCCCH-HHHHHHHCcCEEeC
Confidence            10  00111111111  237899997764331111  0  12223 3478999987784 65 45567888887644

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.81  E-value=0.039  Score=47.61  Aligned_cols=86  Identities=17%  Similarity=0.205  Sum_probs=53.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--ccccc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--AHECD  329 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--~~~~D  329 (457)
                      +++|.|+|.|++|+.+++.|.+.|++ |.+.|.+          .+.+.++.++.+       ......+++.  -.++|
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~----------~~~~~~~a~~~~-------~~~~~~~~~~~~~~~~D   82 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRN----------IDHVRAFAEKYE-------YEYVLINDIDSLIKNND   82 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESC----------HHHHHHHHHHHT-------CEEEECSCHHHHHHTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCC----------HHHHHHHHHHhC-------CceEeecCHHHHhcCCC
Confidence            88999999999999999999999999 6577763          445544444322       1111112221  13799


Q ss_pred             eeeccccCC--ccccccccccc-ceEEEecCC
Q 012750          330 VLIPCALGG--VLKRENAADVK-AKFIIEAAN  358 (457)
Q Consensus       330 IliPaA~~~--~It~~na~~i~-akiIvEgAN  358 (457)
                      ++|-|+...  .++.   +.++ -++|+.-++
T Consensus        83 ivi~at~~~~~~~~~---~~l~~g~~vid~~~  111 (144)
T 3oj0_A           83 VIITATSSKTPIVEE---RSLMPGKLFIDLGN  111 (144)
T ss_dssp             EEEECSCCSSCSBCG---GGCCTTCEEEECCS
T ss_pred             EEEEeCCCCCcEeeH---HHcCCCCEEEEccC
Confidence            999987643  2222   2222 356666665

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.81  E-value=0.04  Score=54.42  Aligned_cols=112  Identities=21%  Similarity=0.154  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH  326 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~  326 (457)
                      ....+++.|+|.|++|+..++.|.+. |.+-|.|.|.+          .+...+..++.+.     ..... +.++++. 
T Consensus       132 ~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~----------~~~~~~l~~~~~~-----~~~~~~~~~e~v~-  195 (312)
T 2i99_A          132 PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRT----------KENAEKFADTVQG-----EVRVCSSVQEAVA-  195 (312)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSS----------HHHHHHHHHHSSS-----CCEECSSHHHHHT-
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC----------HHHHHHHHHHhhC-----CeEEeCCHHHHHh-
Confidence            45778999999999999999988775 77445466652          4555555443221     11111 2233443 


Q ss_pred             ccceeeccccC--Cccccccccccc-ceEEE-ecCCCCCCHHHHHHHHhCCCeEecc
Q 012750          327 ECDVLIPCALG--GVLKRENAADVK-AKFII-EAANHPTDPEADEILSKRGVTILPD  379 (457)
Q Consensus       327 ~~DIliPaA~~--~~It~~na~~i~-akiIv-EgAN~p~t~~a~~iL~~rGI~viPD  379 (457)
                      +|||++-|...  .++..   +.++ -++|+ -|.+.|-..+..+.+.++|+.++-+
T Consensus       196 ~aDiVi~atp~~~~v~~~---~~l~~g~~vi~~g~~~p~~~el~~~~~~~g~~~vD~  249 (312)
T 2i99_A          196 GADVIITVTLATEPILFG---EWVKPGAHINAVGASRPDWRELDDELMKEAVLYVDS  249 (312)
T ss_dssp             TCSEEEECCCCSSCCBCG---GGSCTTCEEEECCCCSTTCCSBCHHHHHHSEEEESC
T ss_pred             cCCEEEEEeCCCCcccCH---HHcCCCcEEEeCCCCCCCceeccHHHHhcCEEEECC
Confidence            68999988643  22222   2232 23444 4788886566667788889766654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=95.78  E-value=0.11  Score=53.55  Aligned_cols=105  Identities=21%  Similarity=0.290  Sum_probs=69.6

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++.|+++.|+|+|++|+.+|+.|...|.+|+ +.|.+...                ..+      +.+.. +.++++.
T Consensus       140 ~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~-~~d~~~~~----------------~~~------~~~~~~~l~ell~  196 (404)
T 1sc6_A          140 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVY-FYDIENKL----------------PLG------NATQVQHLSDLLN  196 (404)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCCC----------------CCT------TCEECSCHHHHHH
T ss_pred             ccccCCCEEEEEeECHHHHHHHHHHHHCCCEEE-EEcCCchh----------------ccC------CceecCCHHHHHh
Confidence            457999999999999999999999999999998 44542210                000      11222 2344443


Q ss_pred             cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750          326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT  375 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~  375 (457)
                       .||+++-|...     +.|+++....+| -.+++.-|-+++ +.++ .+.|.+..|.
T Consensus       197 -~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~  253 (404)
T 1sc6_A          197 -MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA  253 (404)
T ss_dssp             -HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred             -cCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence             78999888644     355555555554 368888888874 4433 4678776664

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=95.76  E-value=0.091  Score=52.83  Aligned_cols=32  Identities=34%  Similarity=0.710  Sum_probs=28.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+|+|.|||-+|+.+++.|.++...|++|.|.
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~~~evvaind~   32 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSRGVEVALINDL   32 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCEEEEEecC
Confidence            37999999999999999988778999999884

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.76  E-value=0.016  Score=58.08  Aligned_cols=118  Identities=19%  Similarity=0.135  Sum_probs=73.5

Q ss_pred             CCCcchHHHHHHHHHHH--HH---HhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCCCe-eeCCCCCCHHH
Q 012750          226 GREAATGRGVVYATEAL--LA---EHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDITGA-VKNADGIDIHK  298 (457)
Q Consensus       226 gr~~aTg~Gv~~~~~~~--l~---~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~-iynp~GLDi~~  298 (457)
                      +..+.|.+|++..++..  .+   .+|.++.|++++|+|.|+ ||+.+|++|...|++|. |+|.+.. ++...      
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVt-v~nR~~~~l~~ra------  218 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVY-SVDVNNIQKFTRG------  218 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEE-EECSSEEEEEESC------
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEE-EEeCchHHHHhHH------
Confidence            34578998886555442  00   057889999999999996 69999999999999976 8887632 22111      


Q ss_pred             HHHhHhhcCCccc-CCCCeec--C-CCcccc--cccceeeccccCC--cccccccccccceEEEecCCCC
Q 012750          299 LLAHKDKTGSLKD-FDGGDSM--E-PSELLA--HECDVLIPCALGG--VLKRENAADVKAKFIIEAANHP  360 (457)
Q Consensus       299 L~~~~~~~g~~~~-~~~~~~i--~-~~ell~--~~~DIliPaA~~~--~It~~na~~i~akiIvEgAN~p  360 (457)
                              ..+.. ....+.+  + .+++-+  .++||+|-|....  +|+.+-++.  ..+|+.-|-.+
T Consensus       219 --------~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~e~vk~--GavVIDVgi~r  278 (320)
T 1edz_A          219 --------ESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKE--GAVCINFACTK  278 (320)
T ss_dssp             --------CCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCT--TEEEEECSSSC
T ss_pred             --------HHHhhhcccccccccccHhHHHHHhccCCEEEECCCCCcceeCHHHcCC--CeEEEEcCCCc
Confidence                    00100 0000111  0 023322  3899999888653  488877643  35777777654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.75  E-value=0.0088  Score=57.85  Aligned_cols=169  Identities=18%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      ++|.|+|.|++|..+++.|.+.|.+|+ +.|.+-          +.+.+..+.        +.... ++.+++ .+||++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~-~~dr~~----------~~~~~~~~~--------g~~~~~~~~~~~-~~advv   61 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVT-VWNRNP----------AKCAPLVAL--------GARQASSPAEVC-AACDIT   61 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEE-EECSSG----------GGGHHHHHH--------TCEECSCHHHHH-HHCSEE
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEE-EEcCCH----------HHHHHHHHC--------CCeecCCHHHHH-HcCCEE
Confidence            479999999999999999999999887 556532          222222222        11222 223333 378999


Q ss_pred             eccccCCccccc-------ccccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCc--------e--e--
Q 012750          332 IPCALGGVLKRE-------NAADV-KAKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGV--------T--V--  389 (457)
Q Consensus       332 iPaA~~~~It~~-------na~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGV--------i--~--  389 (457)
                      +-|........+       -.+.+ +-++|+.-.+.+.  +.+..+.+.++|+.++.-  ...|+.        .  +  
T Consensus        62 i~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~--pv~g~~~~a~~g~l~~~~gg  139 (287)
T 3pdu_A           62 IAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA--PVSGTKKPAEDGTLIILAAG  139 (287)
T ss_dssp             EECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC--CEECCHHHHHHTCEEEEEEE
T ss_pred             EEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC--CccCCHHHHhcCCEEEEEeC
Confidence            988765422211       12333 3467887776542  334456788899887632  122322        1  0  


Q ss_pred             --hhHHHhhhcc-----cC-C---CCHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 012750          390 --SYFEWVQNIQ-----GF-M---WEEDK----VNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGV  443 (457)
Q Consensus       390 --S~~E~~qn~~-----~~-~---w~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~  443 (457)
                        ..+|.++.+-     .. .   ...-+    ++..+...+...+.+.+..+++.|+++.+..-++..
T Consensus       140 ~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~  208 (287)
T 3pdu_A          140 DQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDA  208 (287)
T ss_dssp             CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence              1233333220     00 0   01111    122233334556677888888999998877666543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.73  E-value=0.048  Score=53.26  Aligned_cols=119  Identities=14%  Similarity=0.142  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      -+.|...+++.    .|    ++++.|.|.|.+|+.++..|.+.|.+|+ |.+++-     +  ..++|.    +.+   
T Consensus       105 D~~Gf~~~L~~----~~----~k~vlvlGaGGaaraia~~L~~~G~~v~-V~nRt~-----~--ka~~la----~~~---  161 (269)
T 3phh_A          105 DALGFYLSLKQ----KN----YQNALILGAGGSAKALACELKKQGLQVS-VLNRSS-----R--GLDFFQ----RLG---  161 (269)
T ss_dssp             HHHHHHHHCC-----------CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC-----T--THHHHH----HHT---
T ss_pred             hHHHHHHHHHH----cC----CCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCH-----H--HHHHHH----HCC---
Confidence            46777766654    23    8999999999999999999999997776 776642     1  123332    111   


Q ss_pred             cCCCCeecCCCcccccccceeeccccCCc-----ccccccc-cc-cceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALGGV-----LKRENAA-DV-KAKFIIEAANHPTDPEADEILSKRGVTILPD  379 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~-----It~~na~-~i-~akiIvEgAN~p~t~~a~~iL~~rGI~viPD  379 (457)
                          .+..+.+++ . ++||+|-|..-+.     +..+-.. .+ +..+|++-.-+|-|+ --+..+++|+.+++.
T Consensus       162 ----~~~~~~~~l-~-~~DiVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P~T~-ll~~A~~~G~~~~~G  230 (269)
T 3phh_A          162 ----CDCFMEPPK-S-AFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTP-FLSLAKELKTPFQDG  230 (269)
T ss_dssp             ----CEEESSCCS-S-CCSEEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSSCCH-HHHHHHHTTCCEECS
T ss_pred             ----CeEecHHHh-c-cCCEEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCCchH-HHHHHHHCcCEEECC
Confidence                122233333 2 8999997764432     3222111 22 346889998888444 456677888776543

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=95.71  E-value=0.011  Score=62.10  Aligned_cols=173  Identities=13%  Similarity=0.119  Sum_probs=99.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc--cc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH--EC  328 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~--~~  328 (457)
                      .++|.|+|.|++|+.+|+.|.+.|.+|+ +.|.+          .+.+.+..++.+.    .+.... +.++++..  +|
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~~~~----~gi~~~~s~~e~v~~l~~a   69 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVA-IYNRT----------TSKTEEVFKEHQD----KNLVFTKTLEEFVGSLEKP   69 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------HHHHHHHHHHTTT----SCEEECSSHHHHHHTBCSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEE-EEcCC----------HHHHHHHHHhCcC----CCeEEeCCHHHHHhhccCC
Confidence            3689999999999999999999999875 55542          3444444433210    111111 23344432  59


Q ss_pred             ceeeccccCCccccccc----cccc-ceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCce---------e---
Q 012750          329 DVLIPCALGGVLKRENA----ADVK-AKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGVT---------V---  389 (457)
Q Consensus       329 DIliPaA~~~~It~~na----~~i~-akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGVi---------~---  389 (457)
                      |+++-|...+.-..+.+    +.++ -++|+..+|+..  +.+..+.+.++|+.++.-  .++||..         +   
T Consensus        70 DvVilavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~--pv~gg~~~a~~g~~i~~gg~  147 (474)
T 2iz1_A           70 RRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGT--GVSGGEKGALLGPSMMPGGQ  147 (474)
T ss_dssp             CEEEECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEE--EECSHHHHHHHCCCEEEEEC
T ss_pred             CEEEEEccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECC--CCCCChhhhccCCeEEecCC
Confidence            99998876543222222    2332 368999999852  344446677789887632  3333321         1   


Q ss_pred             -hhHHHhhhc----cc---------CCCCH--------HHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHH
Q 012750          390 -SYFEWVQNI----QG---------FMWEE--------DKVNNELRRYMIRAFHNIKGMCQT-HNCNLRMGAFTL  441 (457)
Q Consensus       390 -S~~E~~qn~----~~---------~~w~~--------e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~  441 (457)
                       ..++.++.+    ..         ..|-.        .-++..+...+...+.+.+..+++ .|+++.++..+.
T Consensus       148 ~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~  222 (474)
T 2iz1_A          148 KEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIF  222 (474)
T ss_dssp             HHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence             123333321    11         11211        122334455556777888888888 799887765544

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.70  E-value=0.012  Score=61.81  Aligned_cols=177  Identities=17%  Similarity=0.134  Sum_probs=98.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc--ccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH--ECD  329 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~--~~D  329 (457)
                      ++|.|+|.|++|+.+|..|.+.|.+|+ +.|.+          .+.+.+..++.+....-.+.... +.+++...  ++|
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~-v~dr~----------~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aD   70 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVA-VFNRT----------YSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPR   70 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------HHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSC
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCC
Confidence            479999999999999999999999876 55542          34444444332211000001111 22344432  599


Q ss_pred             eeeccccCCcccccccc----cc-cceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCce---------e----
Q 012750          330 VLIPCALGGVLKRENAA----DV-KAKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGVT---------V----  389 (457)
Q Consensus       330 IliPaA~~~~It~~na~----~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGVi---------~----  389 (457)
                      +++-|.....-..+.++    .+ .-++|+..+|+..  +.+..+.+.++|+.++.-  .++||..         +    
T Consensus        71 vVilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~--pv~gg~~~a~~g~~i~~gg~~  148 (478)
T 1pgj_A           71 KALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGM--GISGGEEGARKGPAFFPGGTL  148 (478)
T ss_dssp             EEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEE--EEESHHHHHHHCCEEEEEECH
T ss_pred             EEEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEe--eccCCHHHHhcCCeEeccCCH
Confidence            99988765432222222    23 2468999999863  344456788889877632  2222211         1    


Q ss_pred             hhHHHhhhc----cc--------CCCC-HH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750          390 SYFEWVQNI----QG--------FMWE-ED-------KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG  442 (457)
Q Consensus       390 S~~E~~qn~----~~--------~~w~-~e-------~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  442 (457)
                      ..++.++.+    ..        ..|- +.       -++..+...+...+.+.+..++..|+++.+..-+..
T Consensus       149 ~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~  221 (478)
T 1pgj_A          149 SVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE  221 (478)
T ss_dssp             HHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            123333322    11        1121 10       122334444566777888888888998877655543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=95.55  E-value=0.04  Score=56.47  Aligned_cols=110  Identities=23%  Similarity=0.449  Sum_probs=66.7

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc--
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA--  325 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~--  325 (457)
                      ++.|++|.|+|+|.+|+.+++.|...|+ +|+ +.|.+          .+.+.+..++.|       ++.++.+++-+  
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~-v~~r~----------~~ra~~la~~~g-------~~~~~~~~l~~~l  225 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVL-VANRT----------YERAVELARDLG-------GEAVRFDELVDHL  225 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEE-EECSS----------HHHHHHHHHHHT-------CEECCGGGHHHHH
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEE-EEeCC----------HHHHHHHHHHcC-------CceecHHhHHHHh
Confidence            5789999999999999999999999998 776 56653          233333333222       11121122211  


Q ss_pred             cccceeeccccCC--ccccccccc-c------cceEEEecCCCC--CCHHHHHHHHhCCCeE--eccc
Q 012750          326 HECDVLIPCALGG--VLKRENAAD-V------KAKFIIEAANHP--TDPEADEILSKRGVTI--LPDI  380 (457)
Q Consensus       326 ~~~DIliPaA~~~--~It~~na~~-i------~akiIvEgAN~p--~t~~a~~iL~~rGI~v--iPD~  380 (457)
                      ..+||+|-|+...  .++.+.... +      +-.++++-++ |  ++|+   +..-.||.+  +||+
T Consensus       226 ~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~-P~~i~~~---l~~l~~v~l~d~d~l  289 (404)
T 1gpj_A          226 ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN-PRDVEEG---VENIEDVEVRTIDDL  289 (404)
T ss_dssp             HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS-SCSBCTT---GGGSTTEEEEEHHHH
T ss_pred             cCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC-CCCCCcc---ccccCCeEEEeHhhH
Confidence            3799999997532  334344443 2      3457788777 5  3443   233356665  6655

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.49  E-value=0.11  Score=52.39  Aligned_cols=32  Identities=34%  Similarity=0.547  Sum_probs=28.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      .+|+|.|||-+|+.+++.|.++   ...||+|.|.
T Consensus         2 ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~   36 (337)
T 1rm4_O            2 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT   36 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECT
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcC
Confidence            4799999999999999999876   4699999884

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.48  E-value=0.033  Score=55.12  Aligned_cols=111  Identities=16%  Similarity=0.181  Sum_probs=67.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-CEEEEEECCCCeeeCCCCCC-HHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGID-IHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD  329 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~iynp~GLD-i~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D  329 (457)
                      ++|.|+|+|++|..+|+.|.+.| .+|+ +.|.+.     +-.+ .++..+...+.|.        .- ++.+++ .+||
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~-~~dr~~-----~~~~~~~~~~~~~~~~g~--------~~~s~~e~~-~~aD   89 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLA-AYDLRF-----NDPAASGALRARAAELGV--------EPLDDVAGI-ACAD   89 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEE-EECGGG-----GCTTTHHHHHHHHHHTTC--------EEESSGGGG-GGCS
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEE-EEeCCC-----ccccchHHHHHHHHHCCC--------CCCCHHHHH-hcCC
Confidence            68999999999999999999999 8887 566532     1011 1223322222221        22 344544 3799


Q ss_pred             eeeccccCCcccc---cccccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEec
Q 012750          330 VLIPCALGGVLKR---ENAADV-KAKFIIEAANHP--TDPEADEILSKRGVTILP  378 (457)
Q Consensus       330 IliPaA~~~~It~---~na~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viP  378 (457)
                      ++|-|-......+   +-.+.+ +-++|+..++.+  ++.+..+.+.++|+.++.
T Consensus        90 vVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d  144 (317)
T 4ezb_A           90 VVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVE  144 (317)
T ss_dssp             EEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEE
T ss_pred             EEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence            9998865543322   112223 246788776654  234555788899998764

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=95.46  E-value=0.026  Score=54.28  Aligned_cols=100  Identities=16%  Similarity=0.272  Sum_probs=61.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      +||+|.|+|++|+.+++.+.+.+..++++.|.++.-                .    .++   ... +.++++  ++|++
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~----~gv---~v~~dl~~l~--~~DVv   58 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------T----TPY---QQYQHIADVK--GADVA   58 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC----------------------CCS---CBCSCTTTCT--TCSEE
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------c----CCC---ceeCCHHHHh--CCCEE
Confidence            689999999999999999988755999999986530                0    011   111 234555  89999


Q ss_pred             eccccCCcccccccc-cccceEEEecCCCCCCHHHHHHHH----hCCCeEeccc
Q 012750          332 IPCALGGVLKRENAA-DVKAKFIIEAANHPTDPEADEILS----KRGVTILPDI  380 (457)
Q Consensus       332 iPaA~~~~It~~na~-~i~akiIvEgAN~p~t~~a~~iL~----~rGI~viPD~  380 (457)
                      |.++..+... +|+. +-+..+|++-.  .++++-.+.|.    +.+|++.|-|
T Consensus        59 IDft~p~a~~-~~~~l~~g~~vVigTT--G~s~e~~~~l~~aa~~~~v~~a~N~  109 (243)
T 3qy9_A           59 IDFSNPNLLF-PLLDEDFHLPLVVATT--GEKEKLLNKLDELSQNMPVFFSANM  109 (243)
T ss_dssp             EECSCHHHHH-HHHTSCCCCCEEECCC--SSHHHHHHHHHHHTTTSEEEECSSC
T ss_pred             EEeCChHHHH-HHHHHhcCCceEeCCC--CCCHHHHHHHHHHHhcCCEEEECCc
Confidence            9887655433 3443 22346676432  35554443333    3445555554

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.43  E-value=0.012  Score=57.52  Aligned_cols=109  Identities=10%  Similarity=0.178  Sum_probs=65.7

Q ss_pred             CCCCeEEEEecChHHHH-HHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          250 IRDLTFVIQGFGNVGSW-AARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~-~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      ++..+|+|+|+|++|+. .++.|.+ .++++++|+|.+          .+.+.+..++.+.- .|     -+.++++. +
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~~~~~-~~-----~~~~~ll~-~   66 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPN----------KVKREKICSDYRIM-PF-----DSIESLAK-K   66 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSC----------HHHHHHHHHHHTCC-BC-----SCHHHHHT-T
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCC----------HHHHHHHHHHcCCC-Cc-----CCHHHHHh-c
Confidence            34579999999999995 8887776 588999999873          45555554443321 12     13456777 8


Q ss_pred             cceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEecc
Q 012750          328 CDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTILPD  379 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~viPD  379 (457)
                      +|+++-|.... .+.+.+.. +  +..+++|=   |+  + .++++   ..+++|+.+...
T Consensus        67 ~D~V~i~tp~~-~h~~~~~~al~~gk~vl~EK---P~~~~~~~~~~l~~~a~~~g~~~~v~  123 (308)
T 3uuw_A           67 CDCIFLHSSTE-THYEIIKILLNLGVHVYVDK---PLASTVSQGEELIELSTKKNLNLMVG  123 (308)
T ss_dssp             CSEEEECCCGG-GHHHHHHHHHHTTCEEEECS---SSSSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred             CCEEEEeCCcH-hHHHHHHHHHHCCCcEEEcC---CCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            99998775433 23332222 1  33577773   32  2 33333   345667655443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.42  E-value=0.029  Score=54.17  Aligned_cols=105  Identities=13%  Similarity=0.229  Sum_probs=66.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      ++|.|+|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+. + +      ... +.++++. +||++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~-g-~------~~~~~~~~~~~-~~D~v   64 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVY-AFDLM----------EANVAAVVAQ-G-A------QACENNQKVAA-ASDII   64 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHTT-T-C------EECSSHHHHHH-HCSEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHC-C-C------eecCCHHHHHh-CCCEE
Confidence            689999999999999999999999876 56652          3344433332 1 1      111 2233333 79999


Q ss_pred             eccccCCcccc-------ccccccc-ceEEEecCCCC--CCHHHHHHHHhCCCeEe
Q 012750          332 IPCALGGVLKR-------ENAADVK-AKFIIEAANHP--TDPEADEILSKRGVTIL  377 (457)
Q Consensus       332 iPaA~~~~It~-------~na~~i~-akiIvEgAN~p--~t~~a~~iL~~rGI~vi  377 (457)
                      +-|.....-.+       +-.+.++ -++|+.-+|+.  ...+..+.+.++|+.++
T Consensus        65 i~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~  120 (301)
T 3cky_A           65 FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYV  120 (301)
T ss_dssp             EECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            99875432111       1122232 46888888876  23445567788898876

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.41  E-value=0.022  Score=47.89  Aligned_cols=106  Identities=19%  Similarity=0.252  Sum_probs=58.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc----cc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AH  326 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell----~~  326 (457)
                      ++++|+|.|+|.+|+.+++.|.+.|.+|+. .|.+          .+.+.+..++.+. .-+.+ . .+..+.+    -.
T Consensus         3 ~~m~i~IiG~G~iG~~~a~~L~~~g~~v~~-~d~~----------~~~~~~~~~~~~~-~~~~~-d-~~~~~~l~~~~~~   68 (140)
T 1lss_A            3 HGMYIIIAGIGRVGYTLAKSLSEKGHDIVL-IDID----------KDICKKASAEIDA-LVING-D-CTKIKTLEDAGIE   68 (140)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEE-EESC----------HHHHHHHHHHCSS-EEEES-C-TTSHHHHHHTTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEE-EECC----------HHHHHHHHHhcCc-EEEEc-C-CCCHHHHHHcCcc
Confidence            357899999999999999999999999884 4542          3344333332121 00000 0 0111111    13


Q ss_pred             ccceeeccccCCcccc---ccccccc-ceEEEecCCCCCCHHHHHHHHhCCC
Q 012750          327 ECDVLIPCALGGVLKR---ENAADVK-AKFIIEAANHPTDPEADEILSKRGV  374 (457)
Q Consensus       327 ~~DIliPaA~~~~It~---~na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI  374 (457)
                      ++|+++-|......+.   ..+..++ .++|+- +|++.   ..+.|++.|+
T Consensus        69 ~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~~-~~~~~---~~~~l~~~g~  116 (140)
T 1lss_A           69 DADMYIAVTGKEEVNLMSSLLAKSYGINKTIAR-ISEIE---YKDVFERLGV  116 (140)
T ss_dssp             TCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEE-CSSTT---HHHHHHHTTC
T ss_pred             cCCEEEEeeCCchHHHHHHHHHHHcCCCEEEEE-ecCHh---HHHHHHHcCC
Confidence            7899998865432221   1222333 256664 45443   3457788775

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.41  E-value=0.11  Score=51.74  Aligned_cols=134  Identities=17%  Similarity=0.207  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      -+.|...+++    ..+.+++++++.|.|.|.+|+.++..|.+.|++-|.|++++..       +.+...++.++-+.  
T Consensus       131 D~~Gf~~~L~----~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~-------~~~~a~~la~~~~~--  197 (312)
T 3t4e_A          131 DGTGHIRAIK----ESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDD-------FFEKAVAFAKRVNE--  197 (312)
T ss_dssp             HHHHHHHHHH----HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST-------HHHHHHHHHHHHHH--
T ss_pred             cHHHHHHHHH----hcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCc-------hHHHHHHHHHHhhh--
Confidence            3567666654    4588899999999999999999999999999943347766410       12333333322100  


Q ss_pred             cCCC-CeecCCCcc--c---ccccceeeccccCCcc--ccc----ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeE
Q 012750          311 DFDG-GDSMEPSEL--L---AHECDVLIPCALGGVL--KRE----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTI  376 (457)
Q Consensus       311 ~~~~-~~~i~~~el--l---~~~~DIliPaA~~~~I--t~~----na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~v  376 (457)
                      .++. ...++.+++  +   -.++||+|-|..-+.-  +..    ....+ +..+|.+-.-+|. |+= -+.-+++|..+
T Consensus       198 ~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~l-l~~A~~~G~~~  276 (312)
T 3t4e_A          198 NTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTKL-LQQAQQAGCKT  276 (312)
T ss_dssp             HSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSSCHH-HHHHHHTTCEE
T ss_pred             ccCcceEEechHhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCCCHH-HHHHHHCCCeE
Confidence            0110 011222222  1   1379999977654321  111    12234 4578899999994 653 33446777665


Q ss_pred             ec
Q 012750          377 LP  378 (457)
Q Consensus       377 iP  378 (457)
                      ++
T Consensus       277 ~~  278 (312)
T 3t4e_A          277 ID  278 (312)
T ss_dssp             EC
T ss_pred             EC
Confidence            44

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=95.40  E-value=0.18  Score=50.16  Aligned_cols=53  Identities=21%  Similarity=0.258  Sum_probs=44.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+.|-+|+..    +|++.+.+++|++++|+|- .-||+-++.+|.++++.|. ++.++
T Consensus       159 ~PcTp~gv~~----lL~~~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVT-i~Hs~  212 (303)
T 4b4u_A          159 GSATPAGIMT----ILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVT-ICHSR  212 (303)
T ss_dssp             CCHHHHHHHH----HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTT
T ss_pred             cCccHHHHHH----HHHHHCCCCCCCEEEEEeccccccchHHHHHHhcCCEEE-EecCC
Confidence            4689888754    5667899999999999995 6789999999999999987 77663

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.33  E-value=0.17  Score=51.03  Aligned_cols=32  Identities=28%  Similarity=0.490  Sum_probs=28.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      .||+|.|||.+|+.+++.|.++   ...||+|.|.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~   37 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT   37 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            4899999999999999999876   3899999885

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=95.25  E-value=0.054  Score=57.78  Aligned_cols=177  Identities=20%  Similarity=0.251  Sum_probs=121.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHH
Q 012750          158 LSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY  237 (457)
Q Consensus       158 ~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~  237 (457)
                      .+-.|-..+...|++++....||..-|-=+|++.  ..---|.++|+..   -| ++.          +.-.-||-=+..
T Consensus       204 v~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~--~~af~il~ryr~~---ip-vFn----------DDiqGTa~V~lA  267 (555)
T 1gq2_A          204 IRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFAN--ANAFRLLHKYRNK---YC-TFN----------DDIQGTASVAVA  267 (555)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCH--HHHHHHHHHHTTT---SE-EEE----------TTTHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHhhCCCcEEeecccCC--ccHHHHHHHHhcc---CC-Eec----------CccchHHHHHHH
Confidence            3456778899999999999998865566678763  3344455677641   11 111          122346666677


Q ss_pred             HHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEECCCCeeeCCC-CCCHHHHHHhHhh
Q 012750          238 ATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE----RGG-------KVIAVSDITGAVKNAD-GIDIHKLLAHKDK  305 (457)
Q Consensus       238 ~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~iynp~-GLDi~~L~~~~~~  305 (457)
                      ++-.+++..|.+++..||++.|.|..|-.+|++|..    .|.       +|+ +.|++|-|+... +|+..     +..
T Consensus       268 gllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~-~~D~~Gli~~~r~~l~~~-----k~~  341 (555)
T 1gq2_A          268 GLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIW-MVDSKGLIVKGRASLTPE-----KEH  341 (555)
T ss_dssp             HHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEE-EEETTEECBTTCSSCCTT-----GGG
T ss_pred             HHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEE-EEECCCeeeCCCCCchHH-----HHH
Confidence            888889989999999999999999999999999876    684       566 899999999743 34422     111


Q ss_pred             cCCcccCCCCeecCCCccc-ccccceeecccc-CCcccccccccc----cceEEEecCCCCC
Q 012750          306 TGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADV----KAKFIIEAANHPT  361 (457)
Q Consensus       306 ~g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~p~  361 (457)
                         ++.-.. ..-+-.|.+ ..++||||=++. .+.+|++-+...    +-.||---|| |+
T Consensus       342 ---~A~~~~-~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN-Pt  398 (555)
T 1gq2_A          342 ---FAHEHC-EMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSN-PT  398 (555)
T ss_dssp             ---GCBSCC-CCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCS-SG
T ss_pred             ---HHhhcC-CCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC-CC
Confidence               111000 000112233 347999999995 799999988776    3578888888 54

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.23  E-value=0.026  Score=53.96  Aligned_cols=163  Identities=21%  Similarity=0.210  Sum_probs=88.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      ++|.|+|+|++|+.+++.|.+ |.+|+ +.|.+.          +.+.+..+.+-.        ..+.++.+. +||+++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~-~~~~~~----------~~~~~~~~~g~~--------~~~~~~~~~-~~D~vi   60 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTL-VWNRTF----------EKALRHQEEFGS--------EAVPLERVA-EARVIF   60 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEE-EECSST----------HHHHHHHHHHCC--------EECCGGGGG-GCSEEE
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEE-EEeCCH----------HHHHHHHHCCCc--------ccCHHHHHh-CCCEEE
Confidence            479999999999999999999 99876 556532          333333332111        112334443 899999


Q ss_pred             ccccCCccccccc----cccc-ceEEEecCCCC-C-CHHHHHHHHhCCCeEecccccccCCc----------ee----hh
Q 012750          333 PCALGGVLKRENA----ADVK-AKFIIEAANHP-T-DPEADEILSKRGVTILPDIYANSGGV----------TV----SY  391 (457)
Q Consensus       333 PaA~~~~It~~na----~~i~-akiIvEgAN~p-~-t~~a~~iL~~rGI~viPD~laNaGGV----------i~----S~  391 (457)
                      -|.....-.++-+    +.++ -++|+.-.|.. . +.+..+.+.++|+.+++--  +.||.          ++    ..
T Consensus        61 ~~v~~~~~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p--~~~~~~~~~~g~~~~~~~~~~~~  138 (289)
T 2cvz_A           61 TCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAP--VSGGTSGAEAGTLTVMLGGPEEA  138 (289)
T ss_dssp             ECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECC--EESHHHHHHHTCEEEEEESCHHH
T ss_pred             EeCCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEec--CCCChhHHhhCCeEEEECCCHHH
Confidence            9976543122111    2233 36777777754 2 2344566777888776432  22221          11    12


Q ss_pred             HHHhhhcccC----CCCH--H--H----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 012750          392 FEWVQNIQGF----MWEE--D--K----VNNELRRYMIRAFHNIKGMCQTHNCNLRMGA  438 (457)
Q Consensus       392 ~E~~qn~~~~----~w~~--e--~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA  438 (457)
                      ++.++.+-..    .|..  .  .    +...+...+...+.+....+++.|+++.++.
T Consensus       139 ~~~~~~ll~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~  197 (289)
T 2cvz_A          139 VERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKAL  197 (289)
T ss_dssp             HHHHGGGCTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHhhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHH
Confidence            3444432110    1111  1  1    1122333345667777778888999876543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.22  E-value=0.028  Score=53.40  Aligned_cols=94  Identities=16%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccc
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE  327 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~  327 (457)
                      ++.+++|.|+|.|++|+.+++.|.+.|.++|.+.|.+          .+.+.+..++.+       .... +.++++. +
T Consensus         7 ~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~----------~~~~~~~~~~~g-------~~~~~~~~~~~~-~   68 (266)
T 3d1l_A            7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT----------EESARELAQKVE-------AEYTTDLAEVNP-Y   68 (266)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS----------HHHHHHHHHHTT-------CEEESCGGGSCS-C
T ss_pred             CCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCC----------HHHHHHHHHHcC-------CceeCCHHHHhc-C
Confidence            3556799999999999999999999999866677763          344444433312       1111 2334443 7


Q ss_pred             cceeeccccCCccccccccc----c-cceEEEecCCCCC
Q 012750          328 CDVLIPCALGGVLKRENAAD----V-KAKFIIEAANHPT  361 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~----i-~akiIvEgAN~p~  361 (457)
                      ||+++-|.....+ .+-+..    + .-++|+..+|+..
T Consensus        69 ~Dvvi~av~~~~~-~~v~~~l~~~~~~~~ivv~~s~~~~  106 (266)
T 3d1l_A           69 AKLYIVSLKDSAF-AELLQGIVEGKREEALMVHTAGSIP  106 (266)
T ss_dssp             CSEEEECCCHHHH-HHHHHHHHTTCCTTCEEEECCTTSC
T ss_pred             CCEEEEecCHHHH-HHHHHHHHhhcCCCcEEEECCCCCc
Confidence            9999999776543 333222    2 3468888888754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.19  E-value=0.019  Score=60.21  Aligned_cols=174  Identities=13%  Similarity=0.117  Sum_probs=98.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc--cccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA--HECD  329 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~--~~~D  329 (457)
                      ++|.|+|.|++|+.+|..|.+.|.+|+ +.|.+          .+.+.+..+...  .+ .+.... +.++++.  .+||
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~-v~dr~----------~~~~~~l~~~~~--~g-~gi~~~~~~~e~v~~l~~aD   68 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVC-AFNRT----------VSKVDDFLANEA--KG-TKVLGAHSLEEMVSKLKKPR   68 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------THHHHHHHHTTT--TT-SSCEECSSHHHHHHHBCSSC
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHhccc--cC-CCeEEeCCHHHHHhhccCCC
Confidence            579999999999999999999999875 55553          233333333100  00 111211 2344543  3899


Q ss_pred             eeeccccCCcccccccc----ccc-ceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCce---------e----
Q 012750          330 VLIPCALGGVLKRENAA----DVK-AKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGVT---------V----  389 (457)
Q Consensus       330 IliPaA~~~~It~~na~----~i~-akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGVi---------~----  389 (457)
                      +++-|.....-..+.++    .++ -++|+..+|+..  +.+..+.+.++|+.++.-  .++||..         +    
T Consensus        69 vVilaVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~--pv~g~~~~a~~g~~i~~gg~~  146 (482)
T 2pgd_A           69 RIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGS--GVSGGEDGARYGPSLMPGGNK  146 (482)
T ss_dssp             EEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE--EEESHHHHHHHCCEEEEEECT
T ss_pred             EEEEeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCC--CCCCChhhhccCCeEEeCCCH
Confidence            99988665432222222    233 479999999864  334456788889877632  2233321         1    


Q ss_pred             hhHHHhhhcc---cC---------CCC-H-------HHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHH
Q 012750          390 SYFEWVQNIQ---GF---------MWE-E-------DKVNNELRRYMIRAFHNIKGMCQTH-NCNLRMGAFTLG  442 (457)
Q Consensus       390 S~~E~~qn~~---~~---------~w~-~-------e~v~~~l~~~m~~~~~~v~~~a~~~-~~~~r~aA~~~A  442 (457)
                      ..++.++.+-   +.         .|- .       .-+...+...+...+.+.+..+++. |++..+...+..
T Consensus       147 e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~  220 (482)
T 2pgd_A          147 EAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFE  220 (482)
T ss_dssp             TTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence            1233333220   11         111 0       1123334445567778888888888 998877655543

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.14  E-value=0.019  Score=54.01  Aligned_cols=98  Identities=21%  Similarity=0.360  Sum_probs=63.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      ++|.|+|+|++|+..++.|.+.|.++++|+|.+..   .+     +            .+     -+.++++..++|+++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~---~~-----~------------~~-----~~~~~l~~~~~DvVv   55 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE---HE-----K------------MV-----RGIDEFLQREMDVAV   55 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC---CT-----T------------EE-----SSHHHHTTSCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc---hh-----h------------hc-----CCHHHHhcCCCCEEE
Confidence            47999999999999999988899999999987531   10     0            01     123455545899999


Q ss_pred             ccccCCccccccccc-c--cceEEEecCCCCCCHHH-H---HHHHhCCCeE
Q 012750          333 PCALGGVLKRENAAD-V--KAKFIIEAANHPTDPEA-D---EILSKRGVTI  376 (457)
Q Consensus       333 PaA~~~~It~~na~~-i--~akiIvEgAN~p~t~~a-~---~iL~~rGI~v  376 (457)
                      -|.... .+.+.+.. +  ...+|+|..-.+..+++ +   +..+++|+.+
T Consensus        56 ~~~~~~-~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~  105 (236)
T 2dc1_A           56 EAASQQ-AVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRV  105 (236)
T ss_dssp             ECSCHH-HHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCE
T ss_pred             ECCCHH-HHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeE
Confidence            997643 34444433 2  45677775433334544 2   3456778764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.13  E-value=0.054  Score=55.98  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=32.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG  286 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  286 (457)
                      +.+.+|+|.|+|.+|..+++.+...|++|+ +.|.+.
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~-v~D~~~  223 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVS-ATDVRP  223 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSST
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcCCH
Confidence            678999999999999999999999999987 677753

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=95.12  E-value=0.065  Score=53.77  Aligned_cols=107  Identities=23%  Similarity=0.258  Sum_probs=69.9

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|+++.|+|+|++|+.+|+.+...|.+|++ .|.       ..-  +...+    .       +....+-+++|. 
T Consensus       136 ~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~-~d~-------~~~--~~~~~----~-------~~~~~~l~ell~-  193 (334)
T 3kb6_A          136 ARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLC-YDV-------VKR--EDLKE----K-------GCVYTSLDELLK-  193 (334)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE-ECS-------SCC--HHHHH----T-------TCEECCHHHHHH-
T ss_pred             cceecCcEEEEECcchHHHHHHHhhcccCceeee-cCC-------ccc--hhhhh----c-------CceecCHHHHHh-
Confidence            3568999999999999999999999999999985 343       211  11111    0       122334456663 


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~  375 (457)
                      .|||++-+...     +.|+.+...++| --+++--|=+++ ..+| .+.|++.-|.
T Consensus       194 ~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~  250 (334)
T 3kb6_A          194 ESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFS  250 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEE
T ss_pred             hCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCce
Confidence            68988776532     455666556664 357888888884 5444 3567666553

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.10  E-value=0.053  Score=51.24  Aligned_cols=97  Identities=15%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccce
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DI  330 (457)
                      ++|.|+|.|++|+.+++.|.+.| ..|+ +.|.+          .+.+.+..++.+       .... +..+.+  +||+
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~-~~~r~----------~~~~~~~~~~~g-------~~~~~~~~~~~--~~D~   60 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIY-IANRG----------AEKRERLEKELG-------VETSATLPELH--SDDV   60 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEE-EECSS----------HHHHHHHHHHTC-------CEEESSCCCCC--TTSE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEE-EECCC----------HHHHHHHHHhcC-------CEEeCCHHHHh--cCCE
Confidence            47999999999999999999999 7775 56653          344444443312       1211 344555  8999


Q ss_pred             eeccccCCcccccccccc--cceEEEecCCCCCCHHHHHHHH
Q 012750          331 LIPCALGGVLKRENAADV--KAKFIIEAANHPTDPEADEILS  370 (457)
Q Consensus       331 liPaA~~~~It~~na~~i--~akiIvEgAN~p~t~~a~~iL~  370 (457)
                      ++-|..... ..+-+..+  +-++|+.-+|+-......+.+.
T Consensus        61 vi~~v~~~~-~~~v~~~l~~~~~ivv~~~~g~~~~~l~~~~~  101 (263)
T 1yqg_A           61 LILAVKPQD-MEAACKNIRTNGALVLSVAAGLSVGTLSRYLG  101 (263)
T ss_dssp             EEECSCHHH-HHHHHTTCCCTTCEEEECCTTCCHHHHHHHTT
T ss_pred             EEEEeCchh-HHHHHHHhccCCCEEEEecCCCCHHHHHHHcC
Confidence            998875322 12222222  2468888767533223334443

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.09  E-value=0.019  Score=56.32  Aligned_cols=107  Identities=19%  Similarity=0.250  Sum_probs=63.4

Q ss_pred             CeEEEEecChHHHHH-HHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cccce
Q 012750          253 LTFVIQGFGNVGSWA-ARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~-a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~DI  330 (457)
                      .+|+|+|+|++|+.. ++.|.+.+.++++|+|.+          .+.+.+..++.+...-|     -+.++++. .++|+
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~----------~~~~~~~~~~~g~~~~~-----~~~~~~l~~~~~D~   65 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTS----------AERGAAYATENGIGKSV-----TSVEELVGDPDVDA   65 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSC----------HHHHHHHHHHTTCSCCB-----SCHHHHHTCTTCCE
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCC----------HHHHHHHHHHcCCCccc-----CCHHHHhcCCCCCE
Confidence            479999999999987 777777889999999874          44554444432211111     12345665 37999


Q ss_pred             eeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEec
Q 012750          331 LIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTILP  378 (457)
Q Consensus       331 liPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~viP  378 (457)
                      ++-|.... .+.+.+.. +  ...+++|-   |+  | .++++   ..+++|+.+..
T Consensus        66 V~i~tp~~-~h~~~~~~al~~Gk~v~~ek---P~~~~~~~~~~l~~~a~~~g~~~~~  118 (332)
T 2glx_A           66 VYVSTTNE-LHREQTLAAIRAGKHVLCEK---PLAMTLEDAREMVVAAREAGVVLGT  118 (332)
T ss_dssp             EEECSCGG-GHHHHHHHHHHTTCEEEECS---SSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             EEEeCChh-HhHHHHHHHHHCCCeEEEeC---CCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            99886533 22222222 2  23477763   42  3 34443   34567776543

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=95.09  E-value=0.026  Score=59.71  Aligned_cols=172  Identities=13%  Similarity=0.107  Sum_probs=99.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHh-hcCCcccCCCCeec-CCCccccc--cc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKD-KTGSLKDFDGGDSM-EPSELLAH--EC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~-~~g~~~~~~~~~~i-~~~ell~~--~~  328 (457)
                      .+|.|+|.|++|+.+|..|.+.|.+|+ +.|.+          .+.+.+..+ +.+   + .+.... +++++...  +|
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~-v~dr~----------~~~~~~l~~~~~~---~-~gi~~~~s~~e~v~~l~~a   75 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVC-AYNRT----------QSKVDHFLANEAK---G-KSIIGATSIEDFISKLKRP   75 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------SHHHHHHHHTTTT---T-SSEECCSSHHHHHHTSCSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHccccc---C-CCeEEeCCHHHHHhcCCCC
Confidence            589999999999999999999999886 55653          234433333 111   0 011111 22344432  49


Q ss_pred             ceeeccccCCccccccc----cccc-ceEEEecCCCCC--CHHHHHHHHhCCCeEecccccccCCc---------ee---
Q 012750          329 DVLIPCALGGVLKRENA----ADVK-AKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGV---------TV---  389 (457)
Q Consensus       329 DIliPaA~~~~It~~na----~~i~-akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~laNaGGV---------i~---  389 (457)
                      |+++-|-..+....+.+    +.++ -++|+..+|...  +.+..+.|.++|+.+++--  -+||.         ++   
T Consensus        76 DvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~p--Vsgg~~~a~~G~~im~gg~  153 (497)
T 2p4q_A           76 RKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSG--VSGGEEGARYGPSLMPGGS  153 (497)
T ss_dssp             CEEEECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE--EESHHHHHHHCCEEEEEEC
T ss_pred             CEEEEEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCC--cccChhHhhcCCeEEecCC
Confidence            99998876543222222    3343 479999999863  3444567888999876322  22221         11   


Q ss_pred             -hhHHHhhhc----cc-------CCCCH--------HHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHH
Q 012750          390 -SYFEWVQNI----QG-------FMWEE--------DKVNNELRRYMIRAFHNIKGMCQT-HNCNLRMGAFTL  441 (457)
Q Consensus       390 -S~~E~~qn~----~~-------~~w~~--------e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~  441 (457)
                       ..+|.++.+    ..       ..|-.        .-++..+...+.+.+.+.+..+++ .|+++.+..-+.
T Consensus       154 ~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~  226 (497)
T 2p4q_A          154 EEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVF  226 (497)
T ss_dssp             GGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence             223333332    11       11211        112344555567788888888898 599988776555

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.04  E-value=0.17  Score=51.84  Aligned_cols=32  Identities=28%  Similarity=0.490  Sum_probs=28.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      .||+|.|||.+|+.+++.|.++   ...||+|.|.
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~   37 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT   37 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECS
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecC
Confidence            4899999999999999999876   3899999885

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=95.00  E-value=0.053  Score=58.27  Aligned_cols=176  Identities=17%  Similarity=0.213  Sum_probs=120.0

Q ss_pred             CHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHH
Q 012750          159 SNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYA  238 (457)
Q Consensus       159 s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~  238 (457)
                      +-.|-..+...|++++....||..-|-=+|++.  ..---|.++|+.-   -| ++.          +.-.-||-=+..+
T Consensus       243 ~g~~Yd~fvdefv~av~~~fGp~~~I~~EDf~~--p~af~il~ryr~~---ip-vFn----------DDiqGTA~V~lAg  306 (605)
T 1o0s_A          243 RGKDYDTLLDNFMKACTKKYGQKTLIQFEDFAN--PNAFRLLDKYQDK---YT-MFN----------DDIQGTASVIVAG  306 (605)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCH--HHHHHHHHHHTTT---SE-EEE----------HHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHhCCCcEeeHhhcCC--ccHHHHHHHhccC---CC-eeC----------cccchHHHHHHHH
Confidence            455678899999999999998865566678763  3334455677641   11 111          1112466666677


Q ss_pred             HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEECCCCeeeCCC-CCCHHHHHHhHhhc
Q 012750          239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE----RGG-------KVIAVSDITGAVKNAD-GIDIHKLLAHKDKT  306 (457)
Q Consensus       239 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~iynp~-GLDi~~L~~~~~~~  306 (457)
                      +-.+++..|.+++..||++.|.|..|-.+|++|..    .|.       +|+ +.|++|-|+... +|+.     ++.  
T Consensus       307 llnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~-~vD~~Gli~~~r~~l~~-----~k~--  378 (605)
T 1o0s_A          307 LLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY-LMDIDGLVTKNRKEMNP-----RHV--  378 (605)
T ss_dssp             HHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE-EEETTEECBTTCSSCCG-----GGT--
T ss_pred             HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEE-EEECCCceeCCCCCchH-----HHH--
Confidence            88888989999999999999999999999999987    785       565 899999999743 3432     221  


Q ss_pred             CCcccCCCCeecCCCccc-ccccceeecccc-CCcccccccccc----cceEEEecCCCCC
Q 012750          307 GSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADV----KAKFIIEAANHPT  361 (457)
Q Consensus       307 g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~p~  361 (457)
                       .++.-.. ..-+-.|.+ ..++||||=++. .+.+|++-+...    +-.||---|| |+
T Consensus       379 -~~A~~~~-~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN-Pt  436 (605)
T 1o0s_A          379 -QFAKDMP-ETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSN-PT  436 (605)
T ss_dssp             -TTCBSSC-CCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCS-SG
T ss_pred             -HHHhhcC-CCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC-CC
Confidence             1111100 000112233 347999999985 799999988776    3578888888 54

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=94.99  E-value=0.035  Score=53.46  Aligned_cols=109  Identities=16%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCee-cCCCccccccc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDS-MEPSELLAHEC  328 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~-i~~~ell~~~~  328 (457)
                      -++|.|+|+|++|+.+++.|.+.  |.+|+ +.|.+          .+.+.+..+ .+...     .. -+.++.+ .+|
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d~~----------~~~~~~~~~-~g~~~-----~~~~~~~~~~-~~a   67 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIV-GYNRS----------DRSRDIALE-RGIVD-----EATADFKVFA-ALA   67 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEE-EECSS----------HHHHHHHHH-TTSCS-----EEESCTTTTG-GGC
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEE-EEcCC----------HHHHHHHHH-cCCcc-----cccCCHHHhh-cCC
Confidence            36899999999999999999887  56766 55542          334433322 22210     11 1334444 389


Q ss_pred             ceeeccccCCccccccc----cc-c-cceEEEecCCCCC--CHHHHHHHHhCCCeEecc
Q 012750          329 DVLIPCALGGVLKRENA----AD-V-KAKFIIEAANHPT--DPEADEILSKRGVTILPD  379 (457)
Q Consensus       329 DIliPaA~~~~It~~na----~~-i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viPD  379 (457)
                      |+++-|.....+ .+-+    +. + +-.+|+..+|...  +....+.+.++++.++|.
T Consensus        68 DvVilavp~~~~-~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~  125 (290)
T 3b1f_A           68 DVIILAVPIKKT-IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGS  125 (290)
T ss_dssp             SEEEECSCHHHH-HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEE
T ss_pred             CEEEEcCCHHHH-HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEe
Confidence            999999765543 2222    22 3 2358887777643  233344554458888773

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.94  E-value=0.087  Score=54.32  Aligned_cols=105  Identities=24%  Similarity=0.316  Sum_probs=65.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc----cc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA----HE  327 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~----~~  327 (457)
                      +.+|+|.|+|.+|+.+++.|.+.|..|+ |.|.          |.+.+.+..+. |.-.-|-+   .+..++|.    .+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vv-vId~----------d~~~v~~~~~~-g~~vi~GD---at~~~~L~~agi~~   68 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMV-VLDH----------DPDHIETLRKF-GMKVFYGD---ATRMDLLESAGAAK   68 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEE-EEEC----------CHHHHHHHHHT-TCCCEESC---TTCHHHHHHTTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEE-EEEC----------CHHHHHHHHhC-CCeEEEcC---CCCHHHHHhcCCCc
Confidence            4679999999999999999999999998 4455          34555544432 21100111   12233441    37


Q ss_pred             cceeeccccCCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCCe
Q 012750          328 CDVLIPCALGGVLK---RENAADV--KAKFIIEAANHPTDPEADEILSKRGVT  375 (457)
Q Consensus       328 ~DIliPaA~~~~It---~~na~~i--~akiIvEgAN~p~t~~a~~iL~~rGI~  375 (457)
                      +|++|-|.-....|   ...+.++  +.++|+-.-    +++....|.+-|+-
T Consensus        69 A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~----~~~~~~~L~~~Gad  117 (413)
T 3l9w_A           69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARAR----DVDHYIRLRQAGVE  117 (413)
T ss_dssp             CSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEES----SHHHHHHHHHTTCS
T ss_pred             cCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCC
Confidence            89998886543322   2233333  457888553    35677889999983

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.92  E-value=0.16  Score=51.51  Aligned_cols=31  Identities=39%  Similarity=0.564  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSD  283 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD  283 (457)
                      .+|+|.|||-+|+.++|+|.++ ..+||+|.|
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaind   49 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIND   49 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            5899999999999999999876 789999998

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=94.92  E-value=0.2  Score=50.44  Aligned_cols=32  Identities=25%  Similarity=0.507  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC----CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER----GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~----GakVVaVsD~  284 (457)
                      .+|+|-|||-+|+.+++.|.++    ...||+|.|.
T Consensus         2 ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~   37 (335)
T 1obf_O            2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCC
Confidence            4799999999999999998877    5799999984

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.91  E-value=0.016  Score=58.29  Aligned_cols=81  Identities=25%  Similarity=0.260  Sum_probs=52.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcc
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL  323 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~el  323 (457)
                      .+|+|.|+|+||+.+++.|.+.         +.+|++|+|++-  .++.+++..          .+       .-+.+++
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~--~~~~~~~~~----------~~-------~~d~~~l   64 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDP--RKPRAIPQE----------LL-------RAEPFDL   64 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCT--TSCCSSCGG----------GE-------ESSCCCC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCH--HHhhccCcc----------cc-------cCCHHHH
Confidence            5899999999999999998775         579999999862  233333210          00       1145677


Q ss_pred             cccccceeeccccCCcccccccc-cc--cceEEE
Q 012750          324 LAHECDVLIPCALGGVLKRENAA-DV--KAKFII  354 (457)
Q Consensus       324 l~~~~DIliPaA~~~~It~~na~-~i--~akiIv  354 (457)
                      +  ++||++.|+.......+.+. -+  +.-+|+
T Consensus        65 l--~iDvVve~t~~~~~a~~~~~~AL~aGKhVVt   96 (332)
T 2ejw_A           65 L--EADLVVEAMGGVEAPLRLVLPALEAGIPLIT   96 (332)
T ss_dssp             T--TCSEEEECCCCSHHHHHHHHHHHHTTCCEEE
T ss_pred             h--CCCEEEECCCCcHHHHHHHHHHHHcCCeEEE
Confidence            7  99999999654433333332 23  334666

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=94.90  E-value=0.014  Score=57.93  Aligned_cols=108  Identities=23%  Similarity=0.387  Sum_probs=63.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cccce
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~DI  330 (457)
                      .||+|+|+|++|...++.|.+. +.+|++|+|.+          .+.+.+..++.+....|     -+.++++. .++|+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~D~   67 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVR----------EDRLREMKEKLGVEKAY-----KDPHELIEDPNVDA   67 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSC----------HHHHHHHHHHHTCSEEE-----SSHHHHHHCTTCCE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCC----------HHHHHHHHHHhCCCcee-----CCHHHHhcCCCCCE
Confidence            5899999999999999988764 78999999873          44555444433211111     13356664 37899


Q ss_pred             eeccccCCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCCeEecc
Q 012750          331 LIPCALGGVLKRENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKRGVTILPD  379 (457)
Q Consensus       331 liPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~~a~~---iL~~rGI~viPD  379 (457)
                      ++-|.... .+.+.+..   -...+++|-   |+  | .++++   ..+++|+.+...
T Consensus        68 V~i~tp~~-~h~~~~~~al~~gk~v~~EK---P~~~~~~e~~~l~~~a~~~g~~~~v~  121 (344)
T 3ezy_A           68 VLVCSSTN-THSELVIACAKAKKHVFCEK---PLSLNLADVDRMIEETKKADVILFTG  121 (344)
T ss_dssp             EEECSCGG-GHHHHHHHHHHTTCEEEEES---CSCSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EEEcCCCc-chHHHHHHHHhcCCeEEEEC---CCCCCHHHHHHHHHHHHHhCCcEEEe
Confidence            88885432 22222221   133577774   31  2 23332   345666655443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=94.83  E-value=0.054  Score=51.19  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=61.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      ++|.|+|.|++|+.+++.|.+.|..|. +.|.+          .+.+.+..++.+ +.-+     -+.++++. +||+++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~-~~~~~----------~~~~~~~~~~~g-~~~~-----~~~~~~~~-~~D~Vi   65 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELI-ISGSS----------LERSKEIAEQLA-LPYA-----MSHQDLID-QVDLVI   65 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEE-EECSS----------HHHHHHHHHHHT-CCBC-----SSHHHHHH-TCSEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEE-EECCC----------HHHHHHHHHHcC-CEee-----CCHHHHHh-cCCEEE
Confidence            589999999999999999999897654 66653          344444433322 1111     12234443 899999


Q ss_pred             ccccCCcccccccccc-cceEEEecCCCCCCHHHHHHHHhCCCeE
Q 012750          333 PCALGGVLKRENAADV-KAKFIIEAANHPTDPEADEILSKRGVTI  376 (457)
Q Consensus       333 PaA~~~~It~~na~~i-~akiIvEgAN~p~t~~a~~iL~~rGI~v  376 (457)
                      -|.... ...+-+..+ +-++|++-.++-...+..+.+ .++..+
T Consensus        66 ~~v~~~-~~~~v~~~l~~~~~vv~~~~~~~~~~l~~~~-~~~~~~  108 (259)
T 2ahr_A           66 LGIKPQ-LFETVLKPLHFKQPIISMAAGISLQRLATFV-GQDLPL  108 (259)
T ss_dssp             ECSCGG-GHHHHHTTSCCCSCEEECCTTCCHHHHHHHH-CTTSCE
T ss_pred             EEeCcH-hHHHHHHHhccCCEEEEeCCCCCHHHHHHhc-CCCCCE
Confidence            987633 233333333 345888887754333344444 355433

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=94.82  E-value=0.057  Score=52.01  Aligned_cols=105  Identities=18%  Similarity=0.315  Sum_probs=65.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      ++|+|+|.|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+. + +      ... +.++.+. +||++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~-g-~------~~~~~~~~~~~-~~D~v   65 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VSDRN----------PEAIADVIAA-G-A------ETASTAKAIAE-QCDVI   65 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHT-T-C------EECSSHHHHHH-HCSEE
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEE-EEeCC----------HHHHHHHHHC-C-C------eecCCHHHHHh-CCCEE
Confidence            589999999999999999999999875 56653          3444443332 1 1      111 2233333 79999


Q ss_pred             eccccCCccccc------c-cccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEe
Q 012750          332 IPCALGGVLKRE------N-AADV-KAKFIIEAANHPT--DPEADEILSKRGVTIL  377 (457)
Q Consensus       332 iPaA~~~~It~~------n-a~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~vi  377 (457)
                      +-|.....-.++      . .+.+ .-++|+.-+|+..  +.+..+.+.++|+.++
T Consensus        66 i~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~  121 (299)
T 1vpd_A           66 ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEML  121 (299)
T ss_dssp             EECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             EEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            988763321111      1 1223 2468888888763  2344567788888775

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=94.76  E-value=0.23  Score=50.02  Aligned_cols=32  Identities=31%  Similarity=0.612  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHH---C-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE---R-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~---~-GakVVaVsD~  284 (457)
                      .||+|.|||.+|+.+++.|.+   + ...||+|.|.
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~   38 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINEL   38 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCC
Confidence            489999999999999999987   4 7899999885

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=94.67  E-value=0.02  Score=56.75  Aligned_cols=106  Identities=15%  Similarity=0.207  Sum_probs=64.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cccce
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~DI  330 (457)
                      .+|+|+|+|++|+..++.|.+. +.+|++|+|.+          .+.+.+..++.+ ...|     -+.+++++ .++|+
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~~g-~~~~-----~~~~~~l~~~~~D~   68 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPF----------IEGAQRLAEANG-AEAV-----ASPDEVFARDDIDG   68 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS----------HHHHHHHHHTTT-CEEE-----SSHHHHTTCSCCCE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCC----------HHHHHHHHHHcC-Ccee-----CCHHHHhcCCCCCE
Confidence            6899999999999999988875 78999999873          445554444332 2111     13355664 47899


Q ss_pred             eeccccCCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCCeEec
Q 012750          331 LIPCALGGVLKRENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKRGVTILP  378 (457)
Q Consensus       331 liPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~~a~~---iL~~rGI~viP  378 (457)
                      ++-|.... .+.+.+..   -+..+++|-   |+  | .++++   ..+++|+.+..
T Consensus        69 V~i~tp~~-~h~~~~~~al~~gk~v~~EK---P~~~~~~~~~~l~~~a~~~g~~~~v  121 (344)
T 3euw_A           69 IVIGSPTS-THVDLITRAVERGIPALCEK---PIDLDIEMVRACKEKIGDGASKVML  121 (344)
T ss_dssp             EEECSCGG-GHHHHHHHHHHTTCCEEECS---CSCSCHHHHHHHHHHHGGGGGGEEE
T ss_pred             EEEeCCch-hhHHHHHHHHHcCCcEEEEC---CCCCCHHHHHHHHHHHHhcCCeEEe
Confidence            98885432 22222222   133577774   42  3 34433   34456665543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.64  E-value=0.054  Score=53.28  Aligned_cols=108  Identities=14%  Similarity=0.203  Sum_probs=64.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD  329 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D  329 (457)
                      -++|.|+|+|++|..+|+.|.+.|. +|+ +.|.+-        +.+.+.... +.|       .... ++.+++ .+||
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~-~~dr~~--------~~~~~~~~~-~~g-------~~~~~~~~e~~-~~aD   85 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMA-AYDAAS--------AESWRPRAE-ELG-------VSCKASVAEVA-GECD   85 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEE-EECSSC--------HHHHHHHHH-HTT-------CEECSCHHHHH-HHCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEE-EEcCCC--------CHHHHHHHH-HCC-------CEEeCCHHHHH-hcCC
Confidence            4689999999999999999999999 776 666531        122222222 222       2222 223333 3799


Q ss_pred             eeeccccCCcccccccc----cc-cceEEEecCCCC--CCHHHHHHHHhC--CCeEec
Q 012750          330 VLIPCALGGVLKRENAA----DV-KAKFIIEAANHP--TDPEADEILSKR--GVTILP  378 (457)
Q Consensus       330 IliPaA~~~~It~~na~----~i-~akiIvEgAN~p--~t~~a~~iL~~r--GI~viP  378 (457)
                      ++|-|-......+ .+.    .+ .-++|+...+..  ++.+..+.+.++  |+.++.
T Consensus        86 vVi~~vp~~~~~~-~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd  142 (312)
T 3qsg_A           86 VIFSLVTAQAALE-VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAA  142 (312)
T ss_dssp             EEEECSCTTTHHH-HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEEEecCchhHHH-HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEe
Confidence            9998876554322 222    23 336777766544  234445677788  887764

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=94.58  E-value=0.06  Score=57.56  Aligned_cols=179  Identities=18%  Similarity=0.155  Sum_probs=120.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHH
Q 012750          158 LSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY  237 (457)
Q Consensus       158 ~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~  237 (457)
                      .+-.|-..+...|++++....||..-|-=+|++.  ..---|.++|+.   .-| ++..          .-.-||-=+..
T Consensus       206 v~g~eYd~fvdefv~av~~~fG~~~~I~~EDf~~--~~af~il~ryr~---~ip-vFnD----------DiqGTa~V~lA  269 (564)
T 1pj3_A          206 DRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGN--HNAFRFLRKYRE---KYC-TFND----------DIQGTAAVALA  269 (564)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCH--HHHHHHHHHHTT---TSS-EEEH----------HHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHcCCCcEEeehhcCC--ccHHHHHHHhcc---CCC-EeCC----------CCchHHHHHHH
Confidence            3456778899999999999888865555678763  334445567764   112 1111          11246666667


Q ss_pred             HHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEECCCCeeeCCC--CCCHHHHHHhHh
Q 012750          238 ATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE----RGG-------KVIAVSDITGAVKNAD--GIDIHKLLAHKD  304 (457)
Q Consensus       238 ~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~iynp~--GLDi~~L~~~~~  304 (457)
                      ++-.+++..|.+++..||++.|.|.-|-.+|++|..    .|.       +|+ +.|++|-++...  +|+..+ ..+.+
T Consensus       270 gllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~-~~D~~Gli~~~r~~~l~~~k-~~~A~  347 (564)
T 1pj3_A          270 GLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW-MFDKYGLLVKGRKAKIDSYQ-EPFTH  347 (564)
T ss_dssp             HHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE-EEETTEECBTTCSSCCCTTT-GGGCB
T ss_pred             HHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHHcCCChHHhhCcEE-EEeCCCeEECCCcccchHHH-HHHHH
Confidence            788888889999999999999999999999999985    784       555 899999999854  454221 11111


Q ss_pred             hcCCcccCCCCeecCCCccc-ccccceeecccc-CCccccccccccc----ceEEEecCCCCC
Q 012750          305 KTGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANHPT  361 (457)
Q Consensus       305 ~~g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~p~  361 (457)
                      .+...      ..-+-.|.+ ..++||||=++. .+.+|++-+....    -.||---|| |+
T Consensus       348 ~~~~~------~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN-Pt  403 (564)
T 1pj3_A          348 SAPES------IPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSN-PT  403 (564)
T ss_dssp             CCCSS------CCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCS-SG
T ss_pred             hcCcc------ccCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCC-CC
Confidence            00000      000112233 337999999995 7999999877753    578888888 54

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.57  E-value=0.28  Score=49.19  Aligned_cols=32  Identities=38%  Similarity=0.683  Sum_probs=28.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      .+|+|.|||-+|+.++|+|.++   ...||+|.|.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~   35 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcC
Confidence            4799999999999999998875   5899999884

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.55  E-value=0.043  Score=47.94  Aligned_cols=38  Identities=32%  Similarity=0.428  Sum_probs=30.6

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +-..+.+++|+|.|+|.+|+.+++.|.+.|.+|+.+ |.
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vi-d~   50 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVV-DK   50 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEE-ES
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE-EC
Confidence            345578899999999999999999999999998854 44

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=94.54  E-value=0.032  Score=54.97  Aligned_cols=106  Identities=16%  Similarity=0.253  Sum_probs=63.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cccce
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~DI  330 (457)
                      .+|+|+|+|++|...++.|.+. +.+|++|+|.+          .+.+.+..++.+ +. |     -+.++++. .++|+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~~~~~~-~~-~-----~~~~~~l~~~~~D~   66 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAF----------PAAAEAIAGAYG-CE-V-----RTIDAIEAAADIDA   66 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS----------HHHHHHHHHHTT-CE-E-----CCHHHHHHCTTCCE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCC----------HHHHHHHHHHhC-CC-c-----CCHHHHhcCCCCCE
Confidence            5899999999999999988875 89999999873          445554444322 11 2     13355664 37898


Q ss_pred             eeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEecc
Q 012750          331 LIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTILPD  379 (457)
Q Consensus       331 liPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~viPD  379 (457)
                      ++-|.... .+.+.+.. +  ...+++|-   |+  | .++++   ..+++|+.+...
T Consensus        67 V~i~tp~~-~h~~~~~~al~~gk~v~~EK---P~~~~~~~~~~l~~~a~~~g~~~~v~  120 (331)
T 4hkt_A           67 VVICTPTD-THADLIERFARAGKAIFCEK---PIDLDAERVRACLKVVSDTKAKLMVG  120 (331)
T ss_dssp             EEECSCGG-GHHHHHHHHHHTTCEEEECS---CSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred             EEEeCCch-hHHHHHHHHHHcCCcEEEec---CCCCCHHHHHHHHHHHHHcCCeEEEc
Confidence            88775432 22222222 1  34577774   42  2 33333   345667655433

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.49  E-value=0.042  Score=44.65  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=28.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCC-CEEEEEECC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERG-GKVIAVSDI  284 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~  284 (457)
                      .+++|+|.|.|.+|+.+++.|.+.| .+|+ +.|.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~-~~~r   37 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVT-VADH   37 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEE-EEES
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEE-EEeC
Confidence            4578999999999999999999999 7776 5555

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=94.46  E-value=0.12  Score=51.39  Aligned_cols=113  Identities=15%  Similarity=0.153  Sum_probs=68.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC  328 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~  328 (457)
                      ...+++.|+|.|.+|+..++.|.+ .+.+.|.|.|.+          .+...++.++.+.. .. ....-+.++.+  ++
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~----------~~~a~~la~~~~~~-~~-~~~~~~~~e~v--~a  188 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR----------EKAAKKFVSYCEDR-GI-SASVQPAEEAS--RC  188 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS----------HHHHHHHHHHHHHT-TC-CEEECCHHHHT--SS
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC----------HHHHHHHHHHHHhc-Cc-eEEECCHHHHh--CC
Confidence            467899999999999999998876 466667677763          44554444321100 00 11111223455  79


Q ss_pred             ceeeccccCC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEe
Q 012750          329 DVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTIL  377 (457)
Q Consensus       329 DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~vi  377 (457)
                      ||++-|+...  +++.+.. +-.+-+++.|+..|-..|.+..+.+++..|+
T Consensus       189 DvVi~aTp~~~pv~~~~~l-~~G~~V~~ig~~~p~~~el~~~~~~~a~v~v  238 (322)
T 1omo_A          189 DVLVTTTPSRKPVVKAEWV-EEGTHINAIGADGPGKQELDVEILKKAKIVV  238 (322)
T ss_dssp             SEEEECCCCSSCCBCGGGC-CTTCEEEECSCCSTTCCCBCHHHHHTEEEEE
T ss_pred             CEEEEeeCCCCceecHHHc-CCCeEEEECCCCCCCccccCHHHHhcCeEEE
Confidence            9999997643  2222111 1245788899998876665555666665444

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=94.45  E-value=0.68  Score=46.79  Aligned_cols=33  Identities=45%  Similarity=0.688  Sum_probs=29.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -.||.|-|||.+|+.++|.+.+.|.+||+|-|.
T Consensus         7 ~~kvgInGFGRIGrlv~R~~~~~~veivainDp   39 (346)
T 3h9e_O            7 ELTVGINGFGRIGRLVLRACMEKGVKVVAVNDP   39 (346)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             eeEEEEECCChHHHHHHHHHHhCCCEEEEEeCC
Confidence            368999999999999999998889999998775

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=94.45  E-value=0.069  Score=55.98  Aligned_cols=170  Identities=24%  Similarity=0.275  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHH
Q 012750          164 ERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALL  243 (457)
Q Consensus       164 e~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l  243 (457)
                      +.+. .+++.+.+-.|.   |-=+|++...  --.+.++|+..... | ++.          +.-.-||-=+..++-.++
T Consensus       149 defv-e~v~~~~P~fG~---InlEDf~ap~--af~il~ryr~~~~i-p-vFn----------DD~qGTA~V~lAgllnAl  210 (487)
T 3nv9_A          149 DAVI-EFVQRIQHTFGA---INLEDISQPN--CYKILDVLRESCDI-P-VWH----------DDQQGTASVTLAGLLNAL  210 (487)
T ss_dssp             HHHH-HHHHHHGGGCSE---EEECSCCTTH--HHHHHHHHHHHCSS-C-EEE----------TTTHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHhCCCCCe---ecHhhcCCch--HHHHHHHHHhhccC-C-ccc----------cccchHHHHHHHHHHHHH
Confidence            3344 366677665543   4456776542  23345566642211 1 111          122346666777888889


Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCCCCCHHHH------HHhHhhcCCcccCCC
Q 012750          244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNADGIDIHKL------LAHKDKTGSLKDFDG  314 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~GLDi~~L------~~~~~~~g~~~~~~~  314 (457)
                      +..|.+++..||++.|.|..|-.++++|.+.|.   +|+ +.|++|.++.... |+...      .++.+...     +.
T Consensus       211 ki~gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~-l~D~~Gli~~~R~-~l~~~~~~~~k~~~A~~~n-----~~  283 (487)
T 3nv9_A          211 KLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIV-MFDSKGSLHNGRE-DIKKDTRFYRKWEICETTN-----PS  283 (487)
T ss_dssp             HHHTCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEE-EEETTEECCTTCH-HHHHCGGGHHHHHHHHHSC-----TT
T ss_pred             HHhCCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEE-EEeccccccCCcc-hhhhhcccHHHHHHHHhcc-----cc
Confidence            988999999999999999999999999999998   566 8999999987542 22111      01111110     00


Q ss_pred             CeecCCCcccccccceeecccc--CCcccccccccccc-eEEEecCCCCC
Q 012750          315 GDSMEPSELLAHECDVLIPCAL--GGVLKRENAADVKA-KFIIEAANHPT  361 (457)
Q Consensus       315 ~~~i~~~ell~~~~DIliPaA~--~~~It~~na~~i~a-kiIvEgAN~p~  361 (457)
                       ..-+-.|.+. .+||||=++.  .+.+|++-+....- .||---|| |+
T Consensus       284 -~~~~L~eav~-~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLSN-Pt  330 (487)
T 3nv9_A          284 -KFGSIAEACV-GADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCAN-PV  330 (487)
T ss_dssp             -CCCSHHHHHT-TCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECCS-SS
T ss_pred             -cCCCHHHHHh-cCCEEEEecccCCCCCCHHHHHhhcCCCEEEECCC-CC
Confidence             0011123333 4599999984  48999998877643 57777777 53

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.44  E-value=0.13  Score=53.62  Aligned_cols=124  Identities=19%  Similarity=0.201  Sum_probs=68.6

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc---------CCC-
Q 012750          245 EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD---------FDG-  314 (457)
Q Consensus       245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~---------~~~-  314 (457)
                      .++....-++|+|+|.|.||..+|..|.+ |.+|+ +.|.+          .+.+.+..+....+..         -.+ 
T Consensus        29 ~~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~-~~D~~----------~~~v~~l~~g~~~i~e~~l~~ll~~~~~~   96 (432)
T 3pid_A           29 QMGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVV-ALDIV----------QAKVDMLNQKISPIVDKEIQEYLAEKPLN   96 (432)
T ss_dssp             ------CCCEEEEECCSHHHHHHHHHHHT-TSEEE-EECSC----------HHHHHHHHTTCCSSCCHHHHHHHHHSCCC
T ss_pred             ccccccCCCEEEEECcCHHHHHHHHHHHc-CCeEE-EEecC----------HHHhhHHhccCCccccccHHHHHhhccCC
Confidence            34555666799999999999999999987 99998 45653          3333322221100000         001 


Q ss_pred             CeecCC-CcccccccceeeccccCCcccccc--------------cccc--cceEEEecCCCC-CCHHHHHHHHhCCCeE
Q 012750          315 GDSMEP-SELLAHECDVLIPCALGGVLKREN--------------AADV--KAKFIIEAANHP-TDPEADEILSKRGVTI  376 (457)
Q Consensus       315 ~~~i~~-~ell~~~~DIliPaA~~~~It~~n--------------a~~i--~akiIvEgAN~p-~t~~a~~iL~~rGI~v  376 (457)
                      ....++ .+.+ .+||++|-|.....-...+              ++ +  .+-+|.+....| +|.+..+.+.+.++.+
T Consensus        97 l~~ttd~~ea~-~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~~  174 (432)
T 3pid_A           97 FRATTDKHDAY-RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVIF  174 (432)
T ss_dssp             EEEESCHHHHH-TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEEE
T ss_pred             eEEEcCHHHHH-hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEee
Confidence            111111 1222 3799999886554211111              11 2  234555555555 4566677888999999


Q ss_pred             eccccc
Q 012750          377 LPDIYA  382 (457)
Q Consensus       377 iPD~la  382 (457)
                      .|.++.
T Consensus       175 sPe~~~  180 (432)
T 3pid_A          175 SPEFLR  180 (432)
T ss_dssp             CCCCCC
T ss_pred             cCccCC
Confidence            998873

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.42  E-value=0.091  Score=50.53  Aligned_cols=82  Identities=17%  Similarity=0.108  Sum_probs=55.8

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750          253 LTFVIQGF-GNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV  330 (457)
Q Consensus       253 ~~vaIqGf-GnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI  330 (457)
                      ++|+|.|+ |.+|+.+++.+.+. +.+++++.|...        |                        .++++..++|+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~--------d------------------------l~~~~~~~~Dv   48 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD--------P------------------------LSLLTDGNTEV   48 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC--------C------------------------THHHHHTTCCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC--------C------------------------HHHHhccCCcE
Confidence            47999996 99999999998765 999999998630        1                        12333347899


Q ss_pred             eeccccCCccccccccc---ccceEEEecCCCCCCHHHHHHH
Q 012750          331 LIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEIL  369 (457)
Q Consensus       331 liPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a~~iL  369 (457)
                      +|.++..... .+|+..   -+..+|++-. + ++++-.+.|
T Consensus        49 vIDfT~p~a~-~~~~~~a~~~g~~~VigTT-G-~~~e~~~~l   87 (245)
T 1p9l_A           49 VIDFTHPDVV-MGNLEFLIDNGIHAVVGTT-G-FTAERFQQV   87 (245)
T ss_dssp             EEECSCTTTH-HHHHHHHHHTTCEEEECCC-C-CCHHHHHHH
T ss_pred             EEEccChHHH-HHHHHHHHHcCCCEEEcCC-C-CCHHHHHHH
Confidence            9999865543 455543   3567888654 3 666544433

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.37  E-value=0.58  Score=45.37  Aligned_cols=125  Identities=12%  Similarity=0.114  Sum_probs=78.1

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      --+.|...+++    ..|.+ .++++.|.|.|.+|+.++..|.+.|++-|.|.+.+          .+...++.++-+. 
T Consensus       102 TD~~G~~~~l~----~~~~~-~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt----------~~ka~~la~~~~~-  165 (271)
T 1npy_A          102 TDYIAIVKLIE----KYHLN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN----------VKTGQYLAALYGY-  165 (271)
T ss_dssp             HHHHHHHHHHH----HTTCC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC----------HHHHHHHHHHHTC-
T ss_pred             CCHHHHHHHHH----HhCCC-CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHHHHcCC-
Confidence            34566666654    34554 67899999999999999999999998434477764          3444444433221 


Q ss_pred             ccCCCCeecCCCcccccccceeeccccCCcccc---cc--c--ccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEecc
Q 012750          310 KDFDGGDSMEPSELLAHECDVLIPCALGGVLKR---EN--A--ADV-KAKFIIEAANHPT-DPEADEILSKRGVTILPD  379 (457)
Q Consensus       310 ~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~---~n--a--~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viPD  379 (457)
                            . +.. ++-..++||+|-|..-+....   +.  .  ..+ +.++|++-..+|. | .--+.-+++|..+++.
T Consensus       166 ------~-~~~-~~~~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~~T-~ll~~A~~~G~~~i~G  235 (271)
T 1npy_A          166 ------A-YIN-SLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVET-PFIRYAQARGKQTISG  235 (271)
T ss_dssp             ------E-EES-CCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSC-HHHHHHHHTTCEEECH
T ss_pred             ------c-cch-hhhcccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCCCCC-HHHHHHHHCCCEEECC
Confidence                  1 111 111247999998886554211   11  1  123 3578999999884 5 4445667888877554

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=94.32  E-value=0.061  Score=53.00  Aligned_cols=108  Identities=20%  Similarity=0.306  Sum_probs=64.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHH-H-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc-c
Q 012750          251 RDLTFVIQGFGNVGSWAARLIH-E-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA-H  326 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~-~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~-~  326 (457)
                      +-.+|+|+|+|++|...++.|. + .++++++|+|.+          .+.+.+..++.+..      ... +.++++. .
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~----------~~~~~~~a~~~g~~------~~~~~~~~~l~~~   70 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD----------SNQLEWAKNELGVE------TTYTNYKDMIDTE   70 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSC----------HHHHHHHHHTTCCS------EEESCHHHHHTTS
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCC----------HHHHHHHHHHhCCC------cccCCHHHHhcCC
Confidence            4468999999999999998887 4 488999999873          44554444432211      112 2345664 3


Q ss_pred             ccceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhC-CCeEec
Q 012750          327 ECDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKR-GVTILP  378 (457)
Q Consensus       327 ~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~i---L~~r-GI~viP  378 (457)
                      ++|+++-|... ..+.+.+.. +  ...+++|-   |+  + .+++++   .+++ |+.+..
T Consensus        71 ~~D~V~i~tp~-~~h~~~~~~al~~G~~v~~eK---p~~~~~~~~~~l~~~a~~~~~~~~~~  128 (346)
T 3cea_A           71 NIDAIFIVAPT-PFHPEMTIYAMNAGLNVFCEK---PLGLDFNEVDEMAKVIKSHPNQIFQS  128 (346)
T ss_dssp             CCSEEEECSCG-GGHHHHHHHHHHTTCEEEECS---CCCSCHHHHHHHHHHHHTCTTSCEEC
T ss_pred             CCCEEEEeCCh-HhHHHHHHHHHHCCCEEEEcC---CCCCCHHHHHHHHHHHHhCCCCeEEE
Confidence            79999988543 223333322 2  33477763   43  3 344443   3566 776654

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=94.30  E-value=0.27  Score=49.35  Aligned_cols=32  Identities=31%  Similarity=0.495  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .+|+|.|||-+|+.++|+|.++ ...||+|.|.
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain~~   34 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            4799999999999999999876 6899999985

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=94.23  E-value=0.1  Score=52.67  Aligned_cols=116  Identities=10%  Similarity=0.112  Sum_probs=71.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCC--eec-CCCcccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGG--DSM-EPSELLA  325 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~--~~i-~~~ell~  325 (457)
                      ...++++|+|.|.+|+..++.|. ..+.+-|.|.|.+          .+...++.++-..   +++.  ... +.++.+.
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~----------~~~a~~la~~~~~---~~g~~~~~~~~~~eav~  193 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD----------PLATAKLIANLKE---YSGLTIRRASSVAEAVK  193 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS----------HHHHHHHHHHHTT---CTTCEEEECSSHHHHHT
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC----------HHHHHHHHHHHHh---ccCceEEEeCCHHHHHh
Confidence            56789999999999999988764 4566556577663          4555554443211   1121  111 1233443


Q ss_pred             cccceeeccccCC----cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 012750          326 HECDVLIPCALGG----VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIY  381 (457)
Q Consensus       326 ~~~DIliPaA~~~----~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~l  381 (457)
                       +|||++-|....    ++..+.+ +-.+-+++.|+..|-..|.+..+.+++..|+ |..
T Consensus       194 -~aDiVi~aTps~~~~pvl~~~~l-~~G~~V~~vgs~~p~~~El~~~~~~~a~v~v-D~~  250 (350)
T 1x7d_A          194 -GVDIITTVTADKAYATIITPDML-EPGMHLNAVGGDCPGKTELHADVLRNARVFV-EYE  250 (350)
T ss_dssp             -TCSEEEECCCCSSEEEEECGGGC-CTTCEEEECSCCBTTBEEECHHHHHTSEEEE-SSH
T ss_pred             -cCCEEEEeccCCCCCceecHHHc-CCCCEEEECCCCCCCceeeCHHHHhcCcEEE-CCH
Confidence             799999997754    2332222 2256788889998876666666777776444 543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=94.20  E-value=0.041  Score=54.76  Aligned_cols=107  Identities=15%  Similarity=0.146  Sum_probs=66.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc-ccccc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL-AHECD  329 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell-~~~~D  329 (457)
                      ..+|+|+|+|++|+..++.|.+. +++|++|+|.+          .+.+.+..++.+ +..|     -+.++++ ..++|
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~----------~~~~~~~~~~~g-~~~~-----~~~~~~l~~~~~D   68 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRT----------EDKREKFGKRYN-CAGD-----ATMEALLAREDVE   68 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSS----------HHHHHHHHHHHT-CCCC-----SSHHHHHHCSSCC
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCC----------HHHHHHHHHHcC-CCCc-----CCHHHHhcCCCCC
Confidence            46899999999999999988876 89999999873          455555444322 1112     1335666 35789


Q ss_pred             eeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEec
Q 012750          330 VLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTILP  378 (457)
Q Consensus       330 IliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~viP  378 (457)
                      +++-|.... .+.+.+.. +  ...+++|-   |+  | .++++   ..+++|+.+..
T Consensus        69 ~V~i~tp~~-~h~~~~~~al~~gk~vl~EK---P~~~~~~~~~~l~~~a~~~~~~~~v  122 (354)
T 3db2_A           69 MVIITVPND-KHAEVIEQCARSGKHIYVEK---PISVSLDHAQRIDQVIKETGVKFLC  122 (354)
T ss_dssp             EEEECSCTT-SHHHHHHHHHHTTCEEEEES---SSCSSHHHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEeCChH-HHHHHHHHHHHcCCEEEEcc---CCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            998875432 33333322 2  34588885   42  3 34443   34567776544

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=94.04  E-value=0.05  Score=55.18  Aligned_cols=45  Identities=13%  Similarity=0.206  Sum_probs=38.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC----CCEEEEEECCCCeeeCCC--CCCH
Q 012750          252 DLTFVIQGFGNVGSWAARLIHER----GGKVIAVSDITGAVKNAD--GIDI  296 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~----GakVVaVsD~~G~iynp~--GLDi  296 (457)
                      -.+|+|.|+|+||+.+++.|.+.    +.+|++|+|++...++++  |++.
T Consensus         4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~   54 (358)
T 1ebf_A            4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNV   54 (358)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSC
T ss_pred             eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCc
Confidence            36899999999999999999886    379999999988778777  8754

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.99  E-value=0.65  Score=44.82  Aligned_cols=114  Identities=19%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH  326 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~  326 (457)
                      +.++|.|+|.|++|+.+++.|.+.|.   .|+ ++|.+          .+.+.+..++.       +.... ++.+.+ .
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~-v~dr~----------~~~~~~l~~~~-------gi~~~~~~~~~~-~   62 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRIC-VTNRS----------LDKLDFFKEKC-------GVHTTQDNRQGA-L   62 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEE-EECSS----------SHHHHHHHHTT-------CCEEESCHHHHH-S
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEE-EEeCC----------HHHHHHHHHHc-------CCEEeCChHHHH-h
Confidence            35789999999999999999999997   665 66653          23444443321       12222 222333 3


Q ss_pred             ccceeeccccCCccccccc----cc-ccce-EEEecCCCCCCHHHHHHHHh--CCCeEeccccccc
Q 012750          327 ECDVLIPCALGGVLKRENA----AD-VKAK-FIIEAANHPTDPEADEILSK--RGVTILPDIYANS  384 (457)
Q Consensus       327 ~~DIliPaA~~~~It~~na----~~-i~ak-iIvEgAN~p~t~~a~~iL~~--rGI~viPD~laNa  384 (457)
                      +||++|.|.....+ .+-+    +. ++.+ +|+--+++-......+.|..  +=+.+.|-.-+-.
T Consensus        63 ~aDvVilav~p~~~-~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v  127 (280)
T 3tri_A           63 NADVVVLAVKPHQI-KMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSV  127 (280)
T ss_dssp             SCSEEEECSCGGGH-HHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGG
T ss_pred             cCCeEEEEeCHHHH-HHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHh
Confidence            79999999754332 2222    22 3444 77766665333333444532  2245556543333

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.95  E-value=0.044  Score=50.59  Aligned_cols=105  Identities=19%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc----cccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell----~~~~  328 (457)
                      ++|+|.|+|.+|+.+++.|.+.|..|+. .|.          |.+.+.++.+..+.-.-+.++   +..+.+    -.+|
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~v-id~----------~~~~~~~l~~~~~~~~i~gd~---~~~~~l~~a~i~~a   66 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVI-INK----------DRELCEEFAKKLKATIIHGDG---SHKEILRDAEVSKN   66 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEE-EES----------CHHHHHHHHHHSSSEEEESCT---TSHHHHHHHTCCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEE-EEC----------CHHHHHHHHHHcCCeEEEcCC---CCHHHHHhcCcccC
Confidence            4799999999999999999999999984 454          344554443332210000011   112222    1378


Q ss_pred             ceeeccccCCccc---cccccc-c-cceEEEecCCCCCCHHHHHHHHhCCCe
Q 012750          329 DVLIPCALGGVLK---RENAAD-V-KAKFIIEAANHPTDPEADEILSKRGVT  375 (457)
Q Consensus       329 DIliPaA~~~~It---~~na~~-i-~akiIvEgAN~p~t~~a~~iL~~rGI~  375 (457)
                      |++|-|...+..|   ...+.+ . ..++|+- +|.   ++-.+.|++-|+-
T Consensus        67 d~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~-~~~---~~~~~~l~~~G~d  114 (218)
T 3l4b_C           67 DVVVILTPRDEVNLFIAQLVMKDFGVKRVVSL-VND---PGNMEIFKKMGIT  114 (218)
T ss_dssp             CEEEECCSCHHHHHHHHHHHHHTSCCCEEEEC-CCS---GGGHHHHHHHTCE
T ss_pred             CEEEEecCCcHHHHHHHHHHHHHcCCCeEEEE-EeC---cchHHHHHHCCCC
Confidence            9999776544333   223333 2 3356663 333   3455677888874

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=93.94  E-value=2.5  Score=43.71  Aligned_cols=34  Identities=21%  Similarity=0.408  Sum_probs=28.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .|.+..|+|.|.||..+|..|.++|.+|++ .|.+
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~-~D~~   43 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLG-VDIN   43 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEE-ECSC
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEE-EECC
Confidence            577899999999999999999999999984 5653

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=93.90  E-value=0.07  Score=52.64  Aligned_cols=110  Identities=14%  Similarity=0.155  Sum_probs=66.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-ccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HEC  328 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~  328 (457)
                      +..+|+|+|+|++|...++.|.+ .+.+|++|+|.+          .+.+.+..++.+...-|     -+.++++. .++
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~   68 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRR----------LENAQKMAKELAIPVAY-----GSYEELCKDETI   68 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSS----------SHHHHHHHHHTTCCCCB-----SSHHHHHHCTTC
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCC----------HHHHHHHHHHcCCCcee-----CCHHHHhcCCCC
Confidence            45789999999999999999887 478999999874          23444444433211111     13356664 478


Q ss_pred             ceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEecc
Q 012750          329 DVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTILPD  379 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~viPD  379 (457)
                      |+++-|.... .+.+.+.. +  +..+++|-   |+  | .++++   ..+++|+.+...
T Consensus        69 D~V~i~tp~~-~h~~~~~~al~~gk~vl~EK---P~~~~~~e~~~l~~~a~~~g~~~~v~  124 (330)
T 3e9m_A           69 DIIYIPTYNQ-GHYSAAKLALSQGKPVLLEK---PFTLNAAEAEELFAIAQEQGVFLMEA  124 (330)
T ss_dssp             SEEEECCCGG-GHHHHHHHHHHTTCCEEECS---SCCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CEEEEcCCCH-HHHHHHHHHHHCCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            9988775433 23333222 2  33577775   42  3 34443   345677765543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.90  E-value=0.1  Score=50.13  Aligned_cols=102  Identities=21%  Similarity=0.349  Sum_probs=58.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      ++|.|+|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+. +       .... +.++++. +||++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~-g-------~~~~~~~~~~~~-~~Dvv   60 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLI-IYDVF----------PDACKEFQDA-G-------EQVVSSPADVAE-KADRI   60 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEE-EECSS----------THHHHHHHTT-T-------CEECSSHHHHHH-HCSEE
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHHHh-cCCEE
Confidence            379999999999999999999999876 55553          2333333221 1       1111 2234443 78999


Q ss_pred             eccccCCcccccc-------cccc-cceEEEecCCCCCCHH-H---HHHHHhCCCeE
Q 012750          332 IPCALGGVLKREN-------AADV-KAKFIIEAANHPTDPE-A---DEILSKRGVTI  376 (457)
Q Consensus       332 iPaA~~~~It~~n-------a~~i-~akiIvEgAN~p~t~~-a---~~iL~~rGI~v  376 (457)
                      +-|.......++-       .+.+ +-++|+. .++- +++ .   .+.+.++|+.+
T Consensus        61 i~~vp~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~-~~~~~~~~~~~~~~~g~~~  115 (296)
T 2gf2_A           61 ITMLPTSINAIEAYSGANGILKKVKKGSLLID-SSTI-DPAVSKELAKEVEKMGAVF  115 (296)
T ss_dssp             EECCSSHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCC-CHHHHHHHHHHHHHTTCEE
T ss_pred             EEeCCCHHHHHHHHhCchhHHhcCCCCCEEEE-CCCC-CHHHHHHHHHHHHHcCCEE
Confidence            9886433211111       1223 2468888 5543 332 2   24566777654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.89  E-value=0.066  Score=49.82  Aligned_cols=91  Identities=18%  Similarity=0.141  Sum_probs=56.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccccee
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL  331 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIl  331 (457)
                      -++|+|+|.|++|..+++.|.+.|.+|+.+.|.+-          +.+.+..++.+..      ...+..+.+ .++|++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~----------~~~~~l~~~~g~~------~~~~~~~~~-~~aDvV   85 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP----------ASLSSVTDRFGAS------VKAVELKDA-LQADVV   85 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG----------GGGHHHHHHHTTT------EEECCHHHH-TTSSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH----------HHHHHHHHHhCCC------cccChHHHH-hcCCEE
Confidence            36899999999999999999999999886577632          2232322222210      111222222 478999


Q ss_pred             eccccCCccccccccc---ccceEEEecCCCC
Q 012750          332 IPCALGGVLKRENAAD---VKAKFIIEAANHP  360 (457)
Q Consensus       332 iPaA~~~~It~~na~~---i~akiIvEgAN~p  360 (457)
                      +-|.....+. +.+..   ++-++|+..+|+.
T Consensus        86 ilavp~~~~~-~v~~~l~~~~~~ivi~~~~g~  116 (220)
T 4huj_A           86 ILAVPYDSIA-DIVTQVSDWGGQIVVDASNAI  116 (220)
T ss_dssp             EEESCGGGHH-HHHTTCSCCTTCEEEECCCCB
T ss_pred             EEeCChHHHH-HHHHHhhccCCCEEEEcCCCC
Confidence            9886533221 11111   4567999999864

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=93.88  E-value=0.066  Score=51.62  Aligned_cols=120  Identities=18%  Similarity=0.176  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL  309 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~  309 (457)
                      -+.|...++++    .  +++| ++.|.|.|.+|+.++..|.+.|+ +|+ |++.+          .+.+.++.++    
T Consensus        94 D~~G~~~~l~~----~--~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~-v~nR~----------~~ka~~la~~----  151 (253)
T 3u62_A           94 DWVGVVKSLEG----V--EVKE-PVVVVGAGGAARAVIYALLQMGVKDIW-VVNRT----------IERAKALDFP----  151 (253)
T ss_dssp             HHHHHHHHTTT----C--CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEE-EEESC----------HHHHHTCCSS----
T ss_pred             hHHHHHHHHHh----c--CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHH----
Confidence            35566666543    2  5688 99999999999999999999998 554 77663          3444333221    


Q ss_pred             ccCCCCeecCCCccc--ccccceeeccccCCccc-cccc--ccc-cceEEEecCCCCCCHHHHHHHHhCCCe-Eecc
Q 012750          310 KDFDGGDSMEPSELL--AHECDVLIPCALGGVLK-RENA--ADV-KAKFIIEAANHPTDPEADEILSKRGVT-ILPD  379 (457)
Q Consensus       310 ~~~~~~~~i~~~ell--~~~~DIliPaA~~~~It-~~na--~~i-~akiIvEgAN~p~t~~a~~iL~~rGI~-viPD  379 (457)
                        +. ....  +++-  -.++||+|-|..-+.-. ....  +.+ +..+|++-+.+ .|+-.++ .+++|+. ++|.
T Consensus       152 --~~-~~~~--~~~~~~~~~aDiVInatp~gm~p~~~~i~~~~l~~~~~V~Divy~-~T~ll~~-A~~~G~~~~~~G  221 (253)
T 3u62_A          152 --VK-IFSL--DQLDEVVKKAKSLFNTTSVGMKGEELPVSDDSLKNLSLVYDVIYF-DTPLVVK-ARKLGVKHIIKG  221 (253)
T ss_dssp             --CE-EEEG--GGHHHHHHTCSEEEECSSTTTTSCCCSCCHHHHTTCSEEEECSSS-CCHHHHH-HHHHTCSEEECT
T ss_pred             --cc-cCCH--HHHHhhhcCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeeCC-CcHHHHH-HHHCCCcEEECC
Confidence              11 0111  2221  13789999765432111 0111  123 34688888877 6665443 4467887 7665

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.87  E-value=0.72  Score=47.90  Aligned_cols=31  Identities=32%  Similarity=0.425  Sum_probs=28.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|.||..+|..|.+.|.+|+ +.|.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~-~~D~   33 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVR-CIDT   33 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEE-EEEC
Confidence            689999999999999999999999998 5565

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=93.83  E-value=0.016  Score=56.55  Aligned_cols=105  Identities=16%  Similarity=0.142  Sum_probs=62.0

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCC--CCeec-CCCcccc
Q 012750          251 RDLTFVIQGF-GNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD--GGDSM-EPSELLA  325 (457)
Q Consensus       251 ~g~~vaIqGf-GnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~--~~~~i-~~~ell~  325 (457)
                      +.+||+|.|+ |.+|+.+++.+. ..|.+|+++.|.+..-.  .|-|..+          +.+..  +.... +.++++.
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~--~g~d~~~----------~~g~~~~~v~~~~dl~~~l~   71 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL--LGSDAGE----------LAGAGKTGVTVQSSLDAVKD   71 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT--CSCCTTC----------SSSSSCCSCCEESCSTTTTT
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhh--hhhhHHH----------HcCCCcCCceecCCHHHHhc
Confidence            4578999998 999999999776 46899999999753110  1323211          11111  11111 2345664


Q ss_pred             cccceeeccccCCccccccccc---ccceEEEecCCCCCCHHHHHHHHh
Q 012750          326 HECDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEILSK  371 (457)
Q Consensus       326 ~~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a~~iL~~  371 (457)
                       ++|++|.++.... +.+|+..   -+..+|++-.  .++++-.+.|.+
T Consensus        72 -~~DvVIDft~p~~-~~~~~~~a~~~G~~vVigTt--G~~~e~~~~L~~  116 (273)
T 1dih_A           72 -DFDVFIDFTRPEG-TLNHLAFCRQHGKGMVIGTT--GFDEAGKQAIRD  116 (273)
T ss_dssp             -SCSEEEECSCHHH-HHHHHHHHHHTTCEEEECCC--CCCHHHHHHHHH
T ss_pred             -CCCEEEEcCChHH-HHHHHHHHHhCCCCEEEECC--CCCHHHHHHHHH
Confidence             8999998875432 2334433   3557888765  356654444443

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.73  E-value=0.18  Score=51.45  Aligned_cols=117  Identities=14%  Similarity=0.133  Sum_probs=64.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc---------CCCC-eecCC-C
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD---------FDGG-DSMEP-S  321 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~---------~~~~-~~i~~-~  321 (457)
                      ++|+|+|.|.||..+|..|.+ |..|++ .|.+          .+.+..+.+....+.+         .++. ...+. .
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~-~d~~----------~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~   68 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTI-VDIL----------PSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSK   68 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEE-ECSC----------HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEE-EECC----------HHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHH
Confidence            479999999999999999998 999884 4553          2233222221111100         0001 11111 1


Q ss_pred             cccccccceeeccccCCc----------cccccccc---cc-ceEE-EecCCCCCC-HHHHHHHHhCCCeEeccccc
Q 012750          322 ELLAHECDVLIPCALGGV----------LKRENAAD---VK-AKFI-IEAANHPTD-PEADEILSKRGVTILPDIYA  382 (457)
Q Consensus       322 ell~~~~DIliPaA~~~~----------It~~na~~---i~-akiI-vEgAN~p~t-~~a~~iL~~rGI~viPD~la  382 (457)
                      +.+ .+||+++-|.....          ...+-++.   ++ -++| .+..|.|-| .+..+.+.++.+.+.|.++.
T Consensus        69 ~~~-~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~~~Pe~~~  144 (402)
T 1dlj_A           69 AAY-KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRIIFSPEFLR  144 (402)
T ss_dssp             HHH-HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEEECCCCCC
T ss_pred             HHh-cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHhCCCeEEECCcccc
Confidence            222 37899988865442          01111111   22 2344 468998844 45555666667888888663

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=93.72  E-value=0.04  Score=54.79  Aligned_cols=107  Identities=21%  Similarity=0.354  Sum_probs=65.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HE  327 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~  327 (457)
                      +-.+|+|+|+|++|...++.|.+.  +.++++|+|.+          .+.+.+..++.+ +..|     -+.++++. .+
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~----------~~~~~~~~~~~~-~~~~-----~~~~~ll~~~~   75 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDID----------PAALKAAVERTG-ARGH-----ASLTDMLAQTD   75 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSS----------HHHHHHHHHHHC-CEEE-----SCHHHHHHHCC
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCC----------HHHHHHHHHHcC-Ccee-----CCHHHHhcCCC
Confidence            346899999999999999988876  88999999873          455555444433 1212     13456664 47


Q ss_pred             cceeeccccCCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          328 CDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      +|+++-|.... .+.+.+..   -...+++|=   |+  | .++++   ..+++|+.+.
T Consensus        76 ~D~V~i~tp~~-~h~~~~~~al~~gk~v~~EK---P~a~~~~~~~~l~~~a~~~g~~~~  130 (354)
T 3q2i_A           76 ADIVILTTPSG-LHPTQSIECSEAGFHVMTEK---PMATRWEDGLEMVKAADKAKKHLF  130 (354)
T ss_dssp             CSEEEECSCGG-GHHHHHHHHHHTTCEEEECS---SSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCEEEECCCcH-HHHHHHHHHHHCCCCEEEeC---CCcCCHHHHHHHHHHHHHhCCeEE
Confidence            89988775433 23332222   134677774   42  3 33433   3456666554

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=93.65  E-value=0.06  Score=56.07  Aligned_cols=117  Identities=15%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC-C---ccccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP-S---ELLAH  326 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~-~---ell~~  326 (457)
                      ++++|.|.|.|.+|+.+++.|.+.|++|+ ++|.+          .+.+.+..++.+.+.... . .+++ +   +++. 
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~-v~~R~----------~~~a~~la~~~~~~~~~~-~-Dv~d~~~l~~~l~-   67 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVT-VACRT----------LESAKKLSAGVQHSTPIS-L-DVNDDAALDAEVA-   67 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEE-EEESS----------HHHHHHTTTTCTTEEEEE-C-CTTCHHHHHHHHT-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEE-EEECC----------HHHHHHHHHhcCCceEEE-e-ecCCHHHHHHHHc-
Confidence            56899999999999999999999999965 66653          334433332211110000 0 0111 1   2333 


Q ss_pred             ccceeeccccCCccccccc-cccc--ceEEEecCCCCCCHHHHHHHHhCCCeEeccccc
Q 012750          327 ECDVLIPCALGGVLKRENA-ADVK--AKFIIEAANHPTDPEADEILSKRGVTILPDIYA  382 (457)
Q Consensus       327 ~~DIliPaA~~~~It~~na-~~i~--akiIvEgAN~p~t~~a~~iL~~rGI~viPD~la  382 (457)
                      ++|++|-|+.... +...+ ..++  ..++.+....|.+.+-.+..+++|+.+++.+-.
T Consensus        68 ~~DvVIn~a~~~~-~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~i~g~g~  125 (450)
T 1ff9_A           68 KHDLVISLIPYTF-HATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGL  125 (450)
T ss_dssp             TSSEEEECCC--C-HHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEEECSCBB
T ss_pred             CCcEEEECCcccc-chHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeEEeCCCC
Confidence            7999999985432 21111 1123  356666433333334445677899988776544

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=93.62  E-value=0.49  Score=47.53  Aligned_cols=32  Identities=31%  Similarity=0.564  Sum_probs=28.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .||+|.|||.+|+.+++.|.++ +.+||+|.|.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~   36 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDP   36 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECC
Confidence            4899999999999999999875 7899999884

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=93.56  E-value=0.019  Score=56.21  Aligned_cols=107  Identities=15%  Similarity=0.156  Sum_probs=63.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cccc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECD  329 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~D  329 (457)
                      -.+|+|+|+|++|+..++.|.+. +.++++|+|.+          .+.+.+..++   +..|     -+.+++++ .++|
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~----------~~~~~~~~~~---~~~~-----~~~~~~l~~~~~D   71 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSN----------PDNLALVPPG---CVIE-----SDWRSVVSAPEVE   71 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESC----------HHHHTTCCTT---CEEE-----SSTHHHHTCTTCC
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCC----------HHHHHHHHhh---Cccc-----CCHHHHhhCCCCC
Confidence            36899999999999999988875 78999999874          2333222211   1111     13456774 5899


Q ss_pred             eeeccccCCccccccccc-cc--ceEEEecCCCCCC-HHHHH---HHHhCCCeEec
Q 012750          330 VLIPCALGGVLKRENAAD-VK--AKFIIEAANHPTD-PEADE---ILSKRGVTILP  378 (457)
Q Consensus       330 IliPaA~~~~It~~na~~-i~--akiIvEgAN~p~t-~~a~~---iL~~rGI~viP  378 (457)
                      +++-|.... .+.+.+.. ++  ..+++|-- ..++ .++++   ..+++|+.+..
T Consensus        72 ~V~i~tp~~-~h~~~~~~al~~Gk~v~~eKP-~~~~~~~~~~l~~~a~~~g~~~~~  125 (315)
T 3c1a_A           72 AVIIATPPA-THAEITLAAIASGKAVLVEKP-LTLDLAEAEAVAAAAKATGVMVWV  125 (315)
T ss_dssp             EEEEESCGG-GHHHHHHHHHHTTCEEEEESS-SCSCHHHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEeCChH-HHHHHHHHHHHCCCcEEEcCC-CcCCHHHHHHHHHHHHHcCCEEEE
Confidence            999886533 33333333 32  35788731 1123 33443   34566766543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.55  E-value=2.1  Score=44.96  Aligned_cols=32  Identities=28%  Similarity=0.189  Sum_probs=28.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CC-EEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GG-KVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-Ga-kVVaVsD~~  285 (457)
                      ++|+|+|.|.||..+|..|.+. |. .|+ +.|.+
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~-~~D~~   52 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVL-GFQRN   52 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEE-EECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEE-EEECC
Confidence            6899999999999999999999 99 998 45654

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=93.49  E-value=0.44  Score=47.75  Aligned_cols=32  Identities=28%  Similarity=0.595  Sum_probs=28.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .||+|.|||.+|+.++|+|.++ ...||+|.|.
T Consensus         2 ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~   34 (330)
T 1gad_O            2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (330)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            4799999999999999999875 5799999885

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=93.46  E-value=0.069  Score=53.25  Aligned_cols=109  Identities=20%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc-ccc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA-HEC  328 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~-~~~  328 (457)
                      -.+|+|+|+|++|+..++.|.+. +.++++|+|.+          .+...+..++.+- .  +..... +.++++. .++
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~----------~~~~~~~a~~~~~-~--~~~~~~~~~~~ll~~~~~   72 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRS----------LEKAKAFATANNY-P--ESTKIHGSYESLLEDPEI   72 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSS----------HHHHHHHHHHTTC-C--TTCEEESSHHHHHHCTTC
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCC----------HHHHHHHHHHhCC-C--CCCeeeCCHHHHhcCCCC
Confidence            36899999999999999888774 78999999873          4455544444331 0  011222 3356774 479


Q ss_pred             ceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          329 DVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      |+++-|.. +..+.+.+.. +  +..+++|=   |+  | .++++   ..+++|+.+.
T Consensus        73 D~V~i~tp-~~~h~~~~~~al~aGk~V~~EK---P~a~~~~e~~~l~~~a~~~g~~~~  126 (362)
T 1ydw_A           73 DALYVPLP-TSLHVEWAIKAAEKGKHILLEK---PVAMNVTEFDKIVDACEANGVQIM  126 (362)
T ss_dssp             CEEEECCC-GGGHHHHHHHHHTTTCEEEECS---SCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred             CEEEEcCC-hHHHHHHHHHHHHCCCeEEEec---CCcCCHHHHHHHHHHHHHcCCEEE
Confidence            99998864 3334443333 2  33588874   43  3 34444   3457787665

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=93.46  E-value=0.018  Score=56.31  Aligned_cols=114  Identities=18%  Similarity=0.220  Sum_probs=67.6

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec--CCCccccc
Q 012750          251 RDLTFVIQG-FGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM--EPSELLAH  326 (457)
Q Consensus       251 ~g~~vaIqG-fGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i--~~~ell~~  326 (457)
                      +-.||+|.| +|.+|+.+++.+.+ .+.++|++.|.++.-  ..|.|+.++.          +.+....+  +.++++. 
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~--~~G~d~gel~----------g~~~gv~v~~dl~~ll~-   72 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSP--QLGQDAGAFL----------GKQTGVALTDDIERVCA-   72 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCT--TTTSBTTTTT----------TCCCSCBCBCCHHHHHH-
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcc--cccccHHHHh----------CCCCCceecCCHHHHhc-
Confidence            347899999 89999999998875 588999999986531  1355544332          11111111  1234454 


Q ss_pred             ccceeeccccCCccccccccc---ccceEEEecCCCCCCHHHHHHHHh----CCCeEeccc
Q 012750          327 ECDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEILSK----RGVTILPDI  380 (457)
Q Consensus       327 ~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a~~iL~~----rGI~viPD~  380 (457)
                      ++||+|.++.... ..+|+..   -+..+|++ . -..+++..+.|.+    .++++.|-|
T Consensus        73 ~~DVVIDfT~p~a-~~~~~~~al~~G~~vVig-T-TG~s~~~~~~L~~aa~~~~vv~a~N~  130 (272)
T 4f3y_A           73 EADYLIDFTLPEG-TLVHLDAALRHDVKLVIG-T-TGFSEPQKAQLRAAGEKIALVFSANM  130 (272)
T ss_dssp             HCSEEEECSCHHH-HHHHHHHHHHHTCEEEEC-C-CCCCHHHHHHHHHHTTTSEEEECSCC
T ss_pred             CCCEEEEcCCHHH-HHHHHHHHHHcCCCEEEE-C-CCCCHHHHHHHHHHhccCCEEEECCC
Confidence            7999999975432 2344433   25567773 2 3356665444443    344555544

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.38  E-value=0.16  Score=47.85  Aligned_cols=111  Identities=20%  Similarity=0.261  Sum_probs=62.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC----EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGG----KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE  327 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~  327 (457)
                      ++|.|+|.|++|+.+++.|.+.|.    +|+ +.|.+          .+.+.+..++.+       .... ++.+.+ .+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~-~~~r~----------~~~~~~~~~~~g-------~~~~~~~~e~~-~~   63 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQII-CSDLN----------TANLKNASEKYG-------LTTTTDNNEVA-KN   63 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEE-EECSC----------HHHHHHHHHHHC-------CEECSCHHHHH-HH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEE-EEeCC----------HHHHHHHHHHhC-------CEEeCChHHHH-Hh
Confidence            589999999999999999999997    776 55652          445544443322       1111 222333 37


Q ss_pred             cceeeccccCCccc---cccccccc-ceEEEecCCCCCCHHHHHHHHh--CCCeEeccccc
Q 012750          328 CDVLIPCALGGVLK---RENAADVK-AKFIIEAANHPTDPEADEILSK--RGVTILPDIYA  382 (457)
Q Consensus       328 ~DIliPaA~~~~It---~~na~~i~-akiIvEgAN~p~t~~a~~iL~~--rGI~viPD~la  382 (457)
                      ||+++-|.....+.   .+-.+.++ -++|+--+++-......+.+..  +-+...|+.-+
T Consensus        64 aDvVilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~  124 (247)
T 3gt0_A           64 ADILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPA  124 (247)
T ss_dssp             CSEEEECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGG
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHH
Confidence            99999997433221   11122233 3577755554332333444432  33456676543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=93.30  E-value=0.07  Score=53.36  Aligned_cols=105  Identities=22%  Similarity=0.313  Sum_probs=68.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH  326 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~  326 (457)
                      .++.|++|.|+|+|++|+.+|+.|...|++|++ .|.+.        +.. +    ++ . + .+     . +.++++. 
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~d~~~--------~~~-~----~~-~-~-~~-----~~~l~ell~-  198 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT-YDIFR--------NPE-L----EK-K-G-YY-----VDSLDDLYK-  198 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSSC--------CHH-H----HH-T-T-CB-----CSCHHHHHH-
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEE-ECCCc--------chh-H----Hh-h-C-ee-----cCCHHHHHh-
Confidence            468999999999999999999999999999884 44432        111 1    11 1 1 11     1 2234443 


Q ss_pred             ccceeeccccCC-----ccccccccccc-ceEEEecCCCC-CCH-HHHHHHHhCCCe
Q 012750          327 ECDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHP-TDP-EADEILSKRGVT  375 (457)
Q Consensus       327 ~~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p-~t~-~a~~iL~~rGI~  375 (457)
                      .||+++-|....     .|+++....++ -.+++.-+-++ ++. +-.+.|.+.+|.
T Consensus       199 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~  255 (333)
T 1j4a_A          199 QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF  255 (333)
T ss_dssp             HCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCce
Confidence            899999887533     34444444443 46777777776 444 345788888876

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.27  E-value=0.1  Score=50.84  Aligned_cols=106  Identities=19%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      ++|.|+|.|++|+.+++.|.+.|.+|+ +.|.+.          +.+.+..+ .+       .... +..+.+ .+||++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~-~~~~~~----------~~~~~~~~-~g-------~~~~~~~~~~~-~~~DvV   90 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVT-VWNRTA----------EKCDLFIQ-EG-------ARLGRTPAEVV-STCDIT   90 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEE-EECSSG----------GGGHHHHH-TT-------CEECSCHHHHH-HHCSEE
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEE-EEeCCH----------HHHHHHHH-cC-------CEEcCCHHHHH-hcCCEE
Confidence            689999999999999999999999876 556532          11222222 11       1111 222333 379999


Q ss_pred             eccccCCccccccc-------ccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEec
Q 012750          332 IPCALGGVLKRENA-------ADV-KAKFIIEAANHPT--DPEADEILSKRGVTILP  378 (457)
Q Consensus       332 iPaA~~~~It~~na-------~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viP  378 (457)
                      +-|.....-.++.+       +.+ +-++|+..+|...  ..+..+.+.++|+.++.
T Consensus        91 i~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~  147 (316)
T 2uyy_A           91 FACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE  147 (316)
T ss_dssp             EECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             EEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            98876332222111       223 3468888888542  22334566678887763

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=93.26  E-value=0.32  Score=49.12  Aligned_cols=32  Identities=28%  Similarity=0.494  Sum_probs=28.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .+|+|-|||.+|+.+++.|.++ ...||+|.|.
T Consensus         3 ikV~InGfGrIGr~v~r~l~~~~~~evvaInd~   35 (342)
T 2ep7_A            3 IKVGINGFGRIGRSFFRASWGREEIEIVAINDL   35 (342)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            4899999999999999998876 6899999984

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=93.21  E-value=0.074  Score=53.03  Aligned_cols=110  Identities=16%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             CCCCeEEEEecChHHH-HHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-c
Q 012750          250 IRDLTFVIQGFGNVGS-WAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-H  326 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~-~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~  326 (457)
                      ++..+|+|+|+|++|+ ..++.|.+. +++|++|+|.+          .+...+..++.+ +..     .-+.++++. .
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~~g-~~~-----~~~~~~ll~~~   88 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRR----------WDRAKRFTERFG-GEP-----VEGYPALLERD   88 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESS----------HHHHHHHHHHHC-SEE-----EESHHHHHTCT
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCC----------HHHHHHHHHHcC-CCC-----cCCHHHHhcCC
Confidence            4557999999999998 678888776 89999999873          445544444322 111     123456774 4


Q ss_pred             ccceeeccccCCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCCeEecc
Q 012750          327 ECDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKRGVTILPD  379 (457)
Q Consensus       327 ~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~~a~~---iL~~rGI~viPD  379 (457)
                      ++|+++-|... ..+.+.+..   -+..++||=   |+  | .++++   ..+++|+.+...
T Consensus        89 ~~D~V~i~tp~-~~h~~~~~~al~aGk~Vl~EK---P~a~~~~ea~~l~~~a~~~g~~~~v~  146 (350)
T 3rc1_A           89 DVDAVYVPLPA-VLHAEWIDRALRAGKHVLAEK---PLTTDRPQAERLFAVARERGLLLMEN  146 (350)
T ss_dssp             TCSEEEECCCG-GGHHHHHHHHHHTTCEEEEES---SSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCc-HHHHHHHHHHHHCCCcEEEeC---CCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence            78999887543 233333322   234588884   42  2 44443   355777766543

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=93.17  E-value=0.12  Score=50.53  Aligned_cols=106  Identities=11%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             CeEEEEecChHHH-HHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750          253 LTFVIQGFGNVGS-WAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~-~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI  330 (457)
                      .+|+|+|+|++|+ ..++.|.+. +.+|+ |+|.+          .+.+.+..++.+. ..    ...+..+.+..++|+
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~-v~d~~----------~~~~~~~a~~~g~-~~----~~~~~~~~l~~~~D~   66 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTRN----------PKVLGTLATRYRV-SA----TCTDYRDVLQYGVDA   66 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECSC----------HHHHHHHHHHTTC-CC----CCSSTTGGGGGCCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEE-EEeCC----------HHHHHHHHHHcCC-Cc----cccCHHHHhhcCCCE
Confidence            5899999999998 488877664 78999 99873          4555555444321 11    012334455668999


Q ss_pred             eeccccCCccccccccc-ccc--eEEEecCCCCC--C-HHHHH---HHHhCCCeEec
Q 012750          331 LIPCALGGVLKRENAAD-VKA--KFIIEAANHPT--D-PEADE---ILSKRGVTILP  378 (457)
Q Consensus       331 liPaA~~~~It~~na~~-i~a--kiIvEgAN~p~--t-~~a~~---iL~~rGI~viP  378 (457)
                      ++-|.... .+.+.+.. +++  .+++|-   |+  | .++++   ..+++|+.+..
T Consensus        67 V~i~tp~~-~h~~~~~~al~~Gk~V~~EK---P~~~~~~~~~~l~~~a~~~g~~~~v  119 (323)
T 1xea_A           67 VMIHAATD-VHSTLAAFFLHLGIPTFVDK---PLAASAQECENLYELAEKHHQPLYV  119 (323)
T ss_dssp             EEECSCGG-GHHHHHHHHHHTTCCEEEES---CSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEECCch-hHHHHHHHHHHCCCeEEEeC---CCcCCHHHHHHHHHHHHhcCCeEEE
Confidence            99886533 33333322 332  478874   43  3 34443   34567776543

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=93.12  E-value=0.075  Score=53.10  Aligned_cols=33  Identities=15%  Similarity=0.437  Sum_probs=29.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  285 (457)
                      .||+|.|||.+|+.+++.|.+. +.+|++|+|.+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~   36 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTK   36 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESS
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            4899999999999999998865 68999999974

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=93.11  E-value=0.082  Score=52.99  Aligned_cols=108  Identities=10%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             CCCeEEEEecChHHH-HHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc-cc
Q 012750          251 RDLTFVIQGFGNVGS-WAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH-EC  328 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~-~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~-~~  328 (457)
                      +..||+|+|+|.++. ..+..|...+++|+||+|.+          .+...+..++.+...-|     -+.+++++. ++
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~----------~~~a~~~a~~~~~~~~~-----~~~~~ll~~~~v   89 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKD----------DALAAEFSAVYADARRI-----ATAEEILEDENI   89 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSC----------HHHHHHHHHHSSSCCEE-----SCHHHHHTCTTC
T ss_pred             cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCC----------HHHHHHHHHHcCCCccc-----CCHHHHhcCCCC
Confidence            457999999999995 45677777899999999973          55665555543321111     134567753 68


Q ss_pred             ceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCCeEe
Q 012750          329 DVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKRGVTIL  377 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~i---L~~rGI~vi  377 (457)
                      |+++=|+. +..+.+.+.. +  ..-++||=   |+  | .+++++   .+++|+.+.
T Consensus        90 D~V~I~tp-~~~H~~~~~~al~aGkhVl~EK---Pla~~~~ea~~l~~~a~~~g~~l~  143 (361)
T 3u3x_A           90 GLIVSAAV-SSERAELAIRAMQHGKDVLVDK---PGMTSFDQLAKLRRVQAETGRIFS  143 (361)
T ss_dssp             CEEEECCC-HHHHHHHHHHHHHTTCEEEEES---CSCSSHHHHHHHHHHHHTTCCCEE
T ss_pred             CEEEEeCC-hHHHHHHHHHHHHCCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEE
Confidence            99887643 2233333222 2  34678874   42  2 344443   446676553

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=93.11  E-value=0.71  Score=46.22  Aligned_cols=32  Identities=22%  Similarity=0.478  Sum_probs=28.5

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  284 (457)
                      .||+|.|||.+|+.+++.|.+ .+..||+|.|.
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~   36 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDP   36 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECS
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCC
Confidence            589999999999999999876 47899999884

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.10  E-value=0.13  Score=48.43  Aligned_cols=105  Identities=15%  Similarity=0.243  Sum_probs=61.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCC----CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERG----GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++|.|+|.|++|+.+++.|.+.|    ..|+ +.|.+-.-   .                     +.... ++.+.+ 
T Consensus         3 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~-~~~~~~~~---~---------------------g~~~~~~~~~~~-   56 (262)
T 2rcy_A            3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLF-YYGPSKKN---T---------------------TLNYMSSNEELA-   56 (262)
T ss_dssp             SSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEE-EECSSCCS---S---------------------SSEECSCHHHHH-
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEE-EEeCCccc---C---------------------ceEEeCCHHHHH-
Confidence            3568999999999999999999888    5665 66664211   0                     11111 122333 


Q ss_pred             cccceeeccccCCcccc---cccccccceEEEecCCCCCCHH-HHHHHHh--CCCeEeccccc
Q 012750          326 HECDVLIPCALGGVLKR---ENAADVKAKFIIEAANHPTDPE-ADEILSK--RGVTILPDIYA  382 (457)
Q Consensus       326 ~~~DIliPaA~~~~It~---~na~~i~akiIvEgAN~p~t~~-a~~iL~~--rGI~viPD~la  382 (457)
                      .+||+++-|.....+.+   +-.+.++-++|+--.|+ ++++ ..+.+.+  +.+.++|....
T Consensus        57 ~~~D~vi~~v~~~~~~~v~~~l~~~l~~~~vv~~~~g-i~~~~l~~~~~~~~~~v~~~p~~p~  118 (262)
T 2rcy_A           57 RHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGG-LNIGKLEEMVGSENKIVWVMPNTPC  118 (262)
T ss_dssp             HHCSEEEECSCTTTHHHHHHHSGGGCTTCEEEECCSS-CCHHHHHHHHCTTSEEEEEECCGGG
T ss_pred             hcCCEEEEEeCHHHHHHHHHHHHHhcCCCEEEEECCC-CCHHHHHHHhCCCCcEEEECCChHH
Confidence            37999999976543221   12222344566666665 4443 3444443  23567787644

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.09  E-value=0.1  Score=45.27  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=28.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      ...+|+|.|+|.+|+.+++.|.+.|..|+.|.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid   33 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVIS   33 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence            45689999999999999999999999998553

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=93.05  E-value=0.13  Score=49.89  Aligned_cols=64  Identities=20%  Similarity=0.329  Sum_probs=46.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD  329 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D  329 (457)
                      .-+||++.|+|+||+.+++.  . +..+++|.|      +.-|              .+    +.... +.++++. ++|
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~------~k~g--------------el----gv~a~~d~d~lla-~pD   62 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD------RISK--------------DI----PGVVRLDEFQVPS-DVS   62 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC------SSCC--------------CC----SSSEECSSCCCCT-TCC
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe------cccc--------------cc----CceeeCCHHHHhh-CCC
Confidence            45899999999999999998  4 999999887      2222              11    11222 4577886 999


Q ss_pred             eeeccccCCcccc
Q 012750          330 VLIPCALGGVLKR  342 (457)
Q Consensus       330 IliPaA~~~~It~  342 (457)
                      +++.||....+.+
T Consensus        63 ~VVe~A~~~av~e   75 (253)
T 1j5p_A           63 TVVECASPEAVKE   75 (253)
T ss_dssp             EEEECSCHHHHHH
T ss_pred             EEEECCCHHHHHH
Confidence            9999996654443

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=92.99  E-value=0.11  Score=52.33  Aligned_cols=33  Identities=21%  Similarity=0.505  Sum_probs=29.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  285 (457)
                      .||+|.|+|.+|+.+++.|.+. +.+|++|+|.+
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~   35 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTS   35 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSS
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            4899999999999999999864 68999999963

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=92.92  E-value=0.029  Score=55.48  Aligned_cols=116  Identities=12%  Similarity=0.100  Sum_probs=68.3

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccc
Q 012750          251 RDLTFVIQG-FGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE  327 (457)
Q Consensus       251 ~g~~vaIqG-fGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~  327 (457)
                      .-.||+|.| +|++|+.+++.+.+ .+.++||+.|.++.  +..|.|+.++...       .. .+.... +.++++. +
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~--~~~G~d~gel~G~-------~~-~gv~v~~dl~~ll~-~   88 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS--SFVDKDASILIGS-------DF-LGVRITDDPESAFS-N   88 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC--TTTTSBGGGGTTC-------SC-CSCBCBSCHHHHTT-S
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc--cccccchHHhhcc-------Cc-CCceeeCCHHHHhc-C
Confidence            346899999 99999999998864 58999999998652  1245555543211       00 011111 2234554 8


Q ss_pred             cceeeccccCCccccccccc---ccceEEEecCCCCCCHHHHHHHH----hCCCeEeccc
Q 012750          328 CDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEILS----KRGVTILPDI  380 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a~~iL~----~rGI~viPD~  380 (457)
                      +||+|.++.... ..+|+..   -+..+|++- - ..+++..+.|.    +.++++.|-|
T Consensus        89 aDVvIDFT~p~a-~~~~~~~~l~~Gv~vViGT-T-G~~~e~~~~L~~aa~~~~~~~a~N~  145 (288)
T 3ijp_A           89 TEGILDFSQPQA-SVLYANYAAQKSLIHIIGT-T-GFSKTEEAQIADFAKYTTIVKSGNM  145 (288)
T ss_dssp             CSEEEECSCHHH-HHHHHHHHHHHTCEEEECC-C-CCCHHHHHHHHHHHTTSEEEECSCC
T ss_pred             CCEEEEcCCHHH-HHHHHHHHHHcCCCEEEEC-C-CCCHHHHHHHHHHhCcCCEEEECCC
Confidence            999999975433 2344443   255677643 2 35664443333    3455666655

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=92.90  E-value=0.076  Score=44.58  Aligned_cols=34  Identities=32%  Similarity=0.626  Sum_probs=28.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++++|+|.|+|.+|+.+++.|.+.|.+|+. .|.
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~-~d~   37 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLA-VDI   37 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEE-EES
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEE-EeC
Confidence            4667899999999999999999999999874 444

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=92.80  E-value=0.2  Score=48.37  Aligned_cols=52  Identities=21%  Similarity=0.275  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          230 ATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -++.|....++..+   +.+++|+++.|.| .|.+|+.+++.|.+.|++|+ +.+.+
T Consensus       100 Td~~g~~~~l~~~~---~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~-i~~R~  152 (287)
T 1lu9_A          100 TTAAAGVALVVKAA---GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVV-LCGRK  152 (287)
T ss_dssp             HHHHHHHHHHHHHT---TSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             chHHHHHHHHHHhh---ccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEE-EEECC
Confidence            45677776665321   6778999999999 89999999999999999965 66653

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=92.79  E-value=0.13  Score=50.79  Aligned_cols=68  Identities=19%  Similarity=0.195  Sum_probs=43.2

Q ss_pred             CeEEEEecChHHHH-HHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cccc
Q 012750          253 LTFVIQGFGNVGSW-AARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECD  329 (457)
Q Consensus       253 ~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~D  329 (457)
                      .||.|+|+|++|+. .+..|.+. +++|+||+|.+          .+.+.+..++.+.-.-|.     +.+++|+ .++|
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~----------~~~a~~~a~~~g~~~~y~-----d~~ell~~~~iD   88 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRD----------LTRAREMADRFSVPHAFG-----SYEEMLASDVID   88 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSS----------HHHHHHHHHHHTCSEEES-----SHHHHHHCSSCS
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCC----------HHHHHHHHHHcCCCeeeC-----CHHHHhcCCCCC
Confidence            58999999999974 56777664 89999999973          455555555433211121     2345553 3566


Q ss_pred             eeeccc
Q 012750          330 VLIPCA  335 (457)
Q Consensus       330 IliPaA  335 (457)
                      +++=|+
T Consensus        89 aV~I~t   94 (350)
T 4had_A           89 AVYIPL   94 (350)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            666554

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.74  E-value=0.096  Score=50.18  Aligned_cols=105  Identities=16%  Similarity=0.191  Sum_probs=63.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      ++|.|+|.|++|+.+++.|.+.|.+|+ +.| +.     +-  .+.+.   +. + +..+     -+.++.+. +||+++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~-~~-----~~--~~~~~---~~-g-~~~~-----~~~~~~~~-~~D~vi   63 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLH-VTT-IG-----PV--ADELL---SL-G-AVNV-----ETARQVTE-FADIIF   63 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEE-ECC-SS-----CC--CHHHH---TT-T-CBCC-----SSHHHHHH-TCSEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEE-EEc-CH-----HH--HHHHH---Hc-C-Cccc-----CCHHHHHh-cCCEEE
Confidence            589999999999999999999999986 555 42     21  12222   11 1 1101     12233343 799999


Q ss_pred             ccccCCcccc-------cccccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEe
Q 012750          333 PCALGGVLKR-------ENAADV-KAKFIIEAANHPT--DPEADEILSKRGVTIL  377 (457)
Q Consensus       333 PaA~~~~It~-------~na~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~vi  377 (457)
                      -|.......+       +-.+.+ +-++|+.-+|+..  +.+..+.+.++|+.++
T Consensus        64 ~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~  118 (295)
T 1yb4_A           64 IMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYL  118 (295)
T ss_dssp             ECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             EECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            8874433111       112223 2468888888742  2344566777888776

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.73  E-value=0.5  Score=46.46  Aligned_cols=171  Identities=16%  Similarity=0.128  Sum_probs=92.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCC----Ceec-CCCccccc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG----GDSM-EPSELLAH  326 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~----~~~i-~~~ell~~  326 (457)
                      ..+|+|+|.|++|..++..|.+.|..|+ +.|.+          .+.+....+++..+ ..|+    .... ++.+  -.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~-~~~r~----------~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~--~~   79 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVI-LWARR----------KEIVDLINVSHTSP-YVEESKITVRATNDLEE--IK   79 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHHSCBT-TBTTCCCCSEEESCGGG--CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC----------HHHHHHHHHhCCcc-cCCCCeeeEEEeCCHHH--hc
Confidence            4789999999999999999999999886 55542          33444444332111 1121    1222 2233  24


Q ss_pred             ccceeeccccCCcccccccccc--cceEEEecCCCCC---CHHHHHHHHhC-----CCeEecccccc--cCC----ceeh
Q 012750          327 ECDVLIPCALGGVLKRENAADV--KAKFIIEAANHPT---DPEADEILSKR-----GVTILPDIYAN--SGG----VTVS  390 (457)
Q Consensus       327 ~~DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~---t~~a~~iL~~r-----GI~viPD~laN--aGG----Vi~S  390 (457)
                      ++|+++-|-.. ...++-+..+  .-++|+.-.|+-.   .....+++.+.     .+..-|....-  .|-    ++.+
T Consensus        80 ~aDvVil~vk~-~~~~~v~~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~g~  158 (335)
T 1z82_A           80 KEDILVIAIPV-QYIREHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAG  158 (335)
T ss_dssp             TTEEEEECSCG-GGHHHHHTTCSSCCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEEEE
T ss_pred             CCCEEEEECCH-HHHHHHHHHhCcCCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEEEe
Confidence            78999888543 3333333333  3578999998632   22334444442     22344544321  221    1111


Q ss_pred             -hHHHhhhccc-----CCCCHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 012750          391 -YFEWVQNIQG-----FMWEEDKV-------------------------NNELRRYMIRAFHNIKGMCQTHNCNLRMG  437 (457)
Q Consensus       391 -~~E~~qn~~~-----~~w~~e~v-------------------------~~~l~~~m~~~~~~v~~~a~~~~~~~r~a  437 (457)
                       .++.++.+-.     ..|+++-.                         +..+...+...+.++...++..|+++.+.
T Consensus       159 ~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~  236 (335)
T 1z82_A          159 ENSKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTF  236 (335)
T ss_dssp             TTHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             hhHHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence             1444444211     12222211                         12233557788888999999999987653

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=92.61  E-value=0.053  Score=53.02  Aligned_cols=109  Identities=13%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             CCCeEEEEecChHHHH-HHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccc
Q 012750          251 RDLTFVIQGFGNVGSW-AARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC  328 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~-~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~  328 (457)
                      +..+|+|+|+|++|+. .++.|.+ .+.++++|+|.+.     +     ...+..++.+ +.-|.     +.+++ ..++
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~-----~-----~~~~~~~~~g-~~~~~-----~~~~l-~~~~   66 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTR-----A-----KALPICESWR-IPYAD-----SLSSL-AASC   66 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSC-----T-----THHHHHHHHT-CCBCS-----SHHHH-HTTC
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCH-----H-----HHHHHHHHcC-CCccC-----cHHHh-hcCC
Confidence            3468999999999986 7887765 5789999998742     2     2222222222 11111     12334 5689


Q ss_pred             ceeeccccCCccccccccc-c--cceEEEecCCCCCC-HHHHH---HHHhCCCeEec
Q 012750          329 DVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPTD-PEADE---ILSKRGVTILP  378 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~t-~~a~~---iL~~rGI~viP  378 (457)
                      |+++-|... ..+.+.+.. +  ...+++|-- ..+| .++++   ..+++|+.+..
T Consensus        67 D~V~i~tp~-~~h~~~~~~al~~G~~v~~eKP-~~~~~~~~~~l~~~a~~~g~~~~~  121 (319)
T 1tlt_A           67 DAVFVHSST-ASHFDVVSTLLNAGVHVCVDKP-LAENLRDAERLVELAARKKLTLMV  121 (319)
T ss_dssp             SEEEECSCT-THHHHHHHHHHHTTCEEEEESS-SCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEeCCc-hhHHHHHHHHHHcCCeEEEeCC-CCCCHHHHHHHHHHHHHcCCeEEE
Confidence            999977543 333333322 2  335788741 1123 34443   34577876654

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.58  E-value=0.12  Score=50.66  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++|++|+|+|.|.||...++.|.+.|++|+-|+
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtVia   43 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEc
Confidence            46899999999999999999999999999998554

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.56  E-value=0.18  Score=51.20  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++.+++|.|+|+|.+|..+++.+...|++|+ +.|.+
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~-~~d~~  204 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVM-ATDVR  204 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            5789999999999999999999999999965 67764

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=92.55  E-value=0.13  Score=52.99  Aligned_cols=109  Identities=13%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             CCCCeEEEEecChHHH-HHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc----ccCCCCeecCCCcc
Q 012750          250 IRDLTFVIQGFGNVGS-WAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL----KDFDGGDSMEPSEL  323 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~-~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~----~~~~~~~~i~~~el  323 (457)
                      .+-.+|+|+|+|++|+ ..++.|.+. +++|++|+|.+          .+.+.+..++.+.-    ..|     -+.+++
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~----------~~~~~~~a~~~g~~~~~~~~~-----~~~~~l  145 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN----------AEKAKIVAAEYGVDPRKIYDY-----SNFDKI  145 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC----------HHHHHHHHHHTTCCGGGEECS-----SSGGGG
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCC----------HHHHHHHHHHhCCCccccccc-----CCHHHH
Confidence            3457899999999997 778877664 68999999974          34444444433211    011     134567


Q ss_pred             cc-cccceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          324 LA-HECDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       324 l~-~~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      ++ .++|+++-|.... .+.+.+.. +  ...+++|=   |+  | .++++   ..+++|+.+.
T Consensus       146 l~~~~vD~V~iatp~~-~h~~~~~~al~aGk~Vl~EK---Pla~~~~e~~~l~~~a~~~g~~~~  205 (433)
T 1h6d_A          146 AKDPKIDAVYIILPNS-LHAEFAIRAFKAGKHVMCEK---PMATSVADCQRMIDAAKAANKKLM  205 (433)
T ss_dssp             GGCTTCCEEEECSCGG-GHHHHHHHHHHTTCEEEECS---SCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             hcCCCCCEEEEcCCch-hHHHHHHHHHHCCCcEEEcC---CCCCCHHHHHHHHHHHHHhCCeEE
Confidence            75 4799999886433 23333322 2  23588873   43  3 34443   3456777654

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=92.51  E-value=0.17  Score=49.92  Aligned_cols=69  Identities=19%  Similarity=0.293  Sum_probs=46.7

Q ss_pred             CeEEEEecChHHHHHHHHHH-H-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc-ccc
Q 012750          253 LTFVIQGFGNVGSWAARLIH-E-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA-HEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~-~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~-~~~  328 (457)
                      .+|+|+|+|++|...++.|. + .+.+|++|+|.+          .+.+.+..++.+-     ..... +.+++++ .++
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~----------~~~~~~~~~~~g~-----~~~~~~~~~~ll~~~~~   67 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVN----------QEAAQKVVEQYQL-----NATVYPNDDSLLADENV   67 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSS----------HHHHHHHHHHTTC-----CCEEESSHHHHHHCTTC
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCC----------HHHHHHHHHHhCC-----CCeeeCCHHHHhcCCCC
Confidence            58999999999999999887 4 588999999873          4555555444331     01111 3355664 368


Q ss_pred             ceeecccc
Q 012750          329 DVLIPCAL  336 (457)
Q Consensus       329 DIliPaA~  336 (457)
                      |+++-|..
T Consensus        68 D~V~i~tp   75 (344)
T 3mz0_A           68 DAVLVTSW   75 (344)
T ss_dssp             CEEEECSC
T ss_pred             CEEEECCC
Confidence            88887753

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.49  E-value=0.23  Score=47.55  Aligned_cols=108  Identities=16%  Similarity=0.174  Sum_probs=61.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCC-----CeecCCCcccc--
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG-----GDSMEPSELLA--  325 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~-----~~~i~~~ell~--  325 (457)
                      ++|+|+|.|++|+.+|..|.+.|..|+ +.|.+          .+.+.+..+.+-.+...++     ....++.++..  
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~r~----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVT-LIDQW----------PAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQN   72 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEE-EEECC----------HHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccC
Confidence            589999999999999999999999887 45553          2333333332111111110     01112334433  


Q ss_pred             cccceeeccccCCccccccc----cccc-ceEEEecCCCCCC-HHHHHHHHhC
Q 012750          326 HECDVLIPCALGGVLKRENA----ADVK-AKFIIEAANHPTD-PEADEILSKR  372 (457)
Q Consensus       326 ~~~DIliPaA~~~~It~~na----~~i~-akiIvEgAN~p~t-~~a~~iL~~r  372 (457)
                      .+||+++-|.....+ .+-+    +.++ -++|+.-.|+..+ ....+.|.+.
T Consensus        73 ~~~d~vi~~v~~~~~-~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~~  124 (316)
T 2ew2_A           73 EQVDLIIALTKAQQL-DAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPKE  124 (316)
T ss_dssp             CCCSEEEECSCHHHH-HHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCGG
T ss_pred             CCCCEEEEEeccccH-HHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCCc
Confidence            289999988765432 2222    2232 3678888887544 3333445444

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.37  E-value=0.09  Score=55.10  Aligned_cols=123  Identities=16%  Similarity=0.150  Sum_probs=63.6

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC-Cc
Q 012750          245 EHGQAIRDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP-SE  322 (457)
Q Consensus       245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~-~e  322 (457)
                      +.+.++++++|+|.|.|.+|+.+++.|.+. |.+|+ |+|.+          .+.+.+..++.+ +.-.. . .+++ ++
T Consensus        16 ~~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~-v~~R~----------~~ka~~la~~~~-~~~~~-~-D~~d~~~   81 (467)
T 2axq_A           16 HIEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVT-VACRT----------LANAQALAKPSG-SKAIS-L-DVTDDSA   81 (467)
T ss_dssp             -------CEEEEEECCSTTHHHHHHHHHTSTTEEEE-EEESS----------HHHHHHHHGGGT-CEEEE-C-CTTCHHH
T ss_pred             ccccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEE-EEECC----------HHHHHHHHHhcC-CcEEE-E-ecCCHHH
Confidence            345678899999999999999999999988 67755 66663          344444433211 10000 0 0111 12


Q ss_pred             ---ccccccceeeccccCCcccccccc-ccc--ceEEEecCCCCCCHHHHHHHHhCCCeEecccccc
Q 012750          323 ---LLAHECDVLIPCALGGVLKRENAA-DVK--AKFIIEAANHPTDPEADEILSKRGVTILPDIYAN  383 (457)
Q Consensus       323 ---ll~~~~DIliPaA~~~~It~~na~-~i~--akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laN  383 (457)
                         ++ .++|++|-|+.... +..-+. .++  ..++......|.+.+-.+..+++|+.+++..-.+
T Consensus        82 l~~~l-~~~DvVIn~tp~~~-~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv~~i~g~G~~  146 (467)
T 2axq_A           82 LDKVL-ADNDVVISLIPYTF-HPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGITVMNEIGLD  146 (467)
T ss_dssp             HHHHH-HTSSEEEECSCGGG-HHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTCEEECSCBBT
T ss_pred             HHHHH-cCCCEEEECCchhh-hHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCCEEEecCCcC
Confidence               22 27999999976431 211111 122  2333322112322333456678899888776543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.36  E-value=0.47  Score=46.78  Aligned_cols=94  Identities=12%  Similarity=0.145  Sum_probs=56.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      +.-++|.|+|.|++|+.+|+.|.+.|.  +|+ +.|.+          .+.+.... +.|.+..    ..-+.+++.-.+
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~-~~dr~----------~~~~~~a~-~~G~~~~----~~~~~~~~~~~~   94 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYDIN----------PESISKAV-DLGIIDE----GTTSIAKVEDFS   94 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEE-EECSC----------HHHHHHHH-HTTSCSE----EESCTTGGGGGC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEE-EEECC----------HHHHHHHH-HCCCcch----hcCCHHHHhhcc
Confidence            445799999999999999999999998  776 45553          33443332 2232211    111334412348


Q ss_pred             cceeeccccCCcccc---cccccc-cceEEEecCCC
Q 012750          328 CDVLIPCALGGVLKR---ENAADV-KAKFIIEAANH  359 (457)
Q Consensus       328 ~DIliPaA~~~~It~---~na~~i-~akiIvEgAN~  359 (457)
                      ||++|-|.....+.+   +-.+.+ .-.+|+.-+..
T Consensus        95 aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A           95 PDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             CCEEEEeCCHHHHHHHHHHHhhccCCCcEEEECCCC
Confidence            999999977654321   112223 23577776544

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=92.28  E-value=0.21  Score=49.59  Aligned_cols=103  Identities=17%  Similarity=0.242  Sum_probs=61.4

Q ss_pred             CCeEEEEecChHHHH-HHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc-c
Q 012750          252 DLTFVIQGFGNVGSW-AARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH-E  327 (457)
Q Consensus       252 g~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~-~  327 (457)
                      ..||+|+|+|.+|+. .+..|.+. +++|+||+|.+          .+.+.   +      .+++.... +.++++.. +
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~----------~~~~~---~------~~~~~~~~~~~~~ll~~~~   67 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSD----------ASKVH---A------DWPAIPVVSDPQMLFNDPS   67 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSC----------HHHHH---T------TCSSCCEESCHHHHHHCSS
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCC----------HHHHH---h------hCCCCceECCHHHHhcCCC
Confidence            468999999999986 67777665 88999999874          33332   1      23333322 34567754 7


Q ss_pred             cceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          328 CDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      +|+++-|.. +..+.+-+.. +  ...+++|=   |+  | .++++   ..+++|+.+.
T Consensus        68 vD~V~i~tp-~~~H~~~~~~al~aGkhV~~EK---Pla~~~~e~~~l~~~a~~~g~~~~  122 (352)
T 3kux_A           68 IDLIVIPTP-NDTHFPLAQSALAAGKHVVVDK---PFTVTLSQANALKEHADDAGLLLS  122 (352)
T ss_dssp             CCEEEECSC-TTTHHHHHHHHHHTTCEEEECS---SCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEeCC-hHHHHHHHHHHHHCCCcEEEEC---CCcCCHHHHHHHHHHHHHcCCeEE
Confidence            899988863 3333333322 2  33577773   42  2 34443   3446676554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.25  E-value=0.35  Score=47.41  Aligned_cols=108  Identities=20%  Similarity=0.263  Sum_probs=59.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC-ccc--CCC---C-eec-CCCccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS-LKD--FDG---G-DSM-EPSELL  324 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~-~~~--~~~---~-~~i-~~~ell  324 (457)
                      ++|+|+|.|.+|..++..|.+.|..|+ +.|.+          .+.+.+..+..+. +.+  .+.   . ... +.++.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~-~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVL-AWDID----------AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV   73 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEE-EEeCC----------HHHHHHHHhcCCeEEeccccccccccceecCCHHHHH
Confidence            689999999999999999999999976 45553          2334333333211 111  000   0 111 112223


Q ss_pred             ccccceeeccccCCccccccccc----cc-ceEEEecCC-CCCCHHHHHHHHhCC
Q 012750          325 AHECDVLIPCALGGVLKRENAAD----VK-AKFIIEAAN-HPTDPEADEILSKRG  373 (457)
Q Consensus       325 ~~~~DIliPaA~~~~It~~na~~----i~-akiIvEgAN-~p~t~~a~~iL~~rG  373 (457)
                       .+||+++-|...... .+-++.    ++ -++|+.-.| .+-+.+..+.|.++|
T Consensus        74 -~~~D~vi~~v~~~~~-~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~l~~~~  126 (359)
T 1bg6_A           74 -KDADVILIVVPAIHH-ASIAANIASYISEGQLIILNPGATGGALEFRKILRENG  126 (359)
T ss_dssp             -TTCSEEEECSCGGGH-HHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTT
T ss_pred             -hcCCEEEEeCCchHH-HHHHHHHHHhCCCCCEEEEcCCCchHHHHHHHHHHhcC
Confidence             379999998765543 222222    22 234444444 333444456677765

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=92.23  E-value=0.42  Score=41.56  Aligned_cols=116  Identities=20%  Similarity=0.185  Sum_probs=62.2

Q ss_pred             hCCC-CCCCeEEEEec----ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC
Q 012750          246 HGQA-IRDLTFVIQGF----GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP  320 (457)
Q Consensus       246 ~g~~-l~g~~vaIqGf----GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~  320 (457)
                      .|.. .+-++|+|+|.    |++|..+++.|.+.|++|..+        ||++   +++       ..+.-|+     +.
T Consensus         7 ~~~~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~v--------np~~---~~i-------~G~~~~~-----s~   63 (138)
T 1y81_A            7 HGSNSKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPV--------NPNY---DEI-------EGLKCYR-----SV   63 (138)
T ss_dssp             -------CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--------CTTC---SEE-------TTEECBS-----SG
T ss_pred             ccccccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEe--------CCCC---CeE-------CCeeecC-----CH
Confidence            3444 56789999999    999999999999999986643        3332   000       0111121     22


Q ss_pred             CcccccccceeeccccCCccccccc---ccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceeh
Q 012750          321 SELLAHECDVLIPCALGGVLKRENA---ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVS  390 (457)
Q Consensus       321 ~ell~~~~DIliPaA~~~~It~~na---~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S  390 (457)
                      +++.+ ++|+.+-|... ....+-+   -..+.+.|+.-. +-.+.+..+..+++|+.++=   -|+=|++..
T Consensus        64 ~el~~-~vDlvii~vp~-~~v~~v~~~~~~~g~~~i~~~~-~~~~~~l~~~a~~~Gi~~ig---pnc~g~~~~  130 (138)
T 1y81_A           64 RELPK-DVDVIVFVVPP-KVGLQVAKEAVEAGFKKLWFQP-GAESEEIRRFLEKAGVEYSF---GRCIMVETS  130 (138)
T ss_dssp             GGSCT-TCCEEEECSCH-HHHHHHHHHHHHTTCCEEEECT-TSCCHHHHHHHHHHTCEEEC---SCCHHHHC-
T ss_pred             HHhCC-CCCEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcC-ccHHHHHHHHHHHCCCEEEc---CCcceEEcc
Confidence            33332 56776655432 1111111   122333343322 12478888899999998762   255555443

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=92.15  E-value=0.17  Score=52.75  Aligned_cols=107  Identities=17%  Similarity=0.211  Sum_probs=64.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHH----------CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCee-c
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHE----------RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDS-M  318 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~----------~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~-i  318 (457)
                      ++..+|+|.|+|+||+.+++.|.+          .+.+|++|+|++.          +.......         +... -
T Consensus         8 Mk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~----------~~~~~~~~---------~~~~~~   68 (444)
T 3mtj_A            8 MKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNL----------DKAEALAG---------GLPLTT   68 (444)
T ss_dssp             CSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCH----------HHHHHHHT---------TCCEES
T ss_pred             hCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCH----------HHhhhhcc---------cCcccC
Confidence            355799999999999999988764          4679999999852          22222211         1111 2


Q ss_pred             CCCcccc-cccceeeccccCCccccccccc-c--cceEEEecCCCCCC-HHHH---HHHHhCCCeEe
Q 012750          319 EPSELLA-HECDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPTD-PEAD---EILSKRGVTIL  377 (457)
Q Consensus       319 ~~~ell~-~~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~t-~~a~---~iL~~rGI~vi  377 (457)
                      +.+++++ .++|+++.|......+.+.+.. +  +..+|+|  |-..+ .+++   +..+++|+.+.
T Consensus        69 d~~ell~d~diDvVve~tp~~~~h~~~~~~AL~aGKhVvte--nkal~a~~~~eL~~~A~~~gv~l~  133 (444)
T 3mtj_A           69 NPFDVVDDPEIDIVVELIGGLEPARELVMQAIANGKHVVTA--NKHLVAKYGNEIFAAAQAKGVMVT  133 (444)
T ss_dssp             CTHHHHTCTTCCEEEECCCSSTTHHHHHHHHHHTTCEEEEC--CHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             CHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHHcCCEEEEC--CcccCHHHHHHHHHHHHHhCCeEE
Confidence            3456764 4899999997654444443322 2  3356654  32222 2333   34567888764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=92.15  E-value=0.41  Score=45.96  Aligned_cols=87  Identities=18%  Similarity=0.290  Sum_probs=55.0

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccccee
Q 012750          253 LTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIl  331 (457)
                      ++|.|+|. |++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+ .| +      ...+..+.+ .+||++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~-~~~r~----------~~~~~~~~~-~g-~------~~~~~~~~~-~~aDvV   71 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLA-AIEIA----------PEGRDRLQG-MG-I------PLTDGDGWI-DEADVV   71 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEE-EECCS----------HHHHHHHHH-TT-C------CCCCSSGGG-GTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEE-EEECC----------HHHHHHHHh-cC-C------CcCCHHHHh-cCCCEE
Confidence            58999999 9999999999999999887 55653          334433332 22 1      111334444 379999


Q ss_pred             eccccCCccccccccc----cc-ceEEEecCCCC
Q 012750          332 IPCALGGVLKRENAAD----VK-AKFIIEAANHP  360 (457)
Q Consensus       332 iPaA~~~~It~~na~~----i~-akiIvEgAN~p  360 (457)
                      |-|.....+ .+-++.    ++ -++|+..+++.
T Consensus        72 i~av~~~~~-~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           72 VLALPDNII-EKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             EECSCHHHH-HHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             EEcCCchHH-HHHHHHHHHhCCCCCEEEECCCCc
Confidence            988765442 222222    22 35788777764

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=92.11  E-value=0.14  Score=50.47  Aligned_cols=107  Identities=17%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC---CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-ccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG---GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~  328 (457)
                      .|++|+|+|++|+..++.|.+..   ++|++|+|.+          .+...+..++.+.-.-|     -+.+++++ .++
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~----------~~~a~~~a~~~~~~~~~-----~~~~~ll~~~~v   67 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARD----------LSRAKEFAQKHDIPKAY-----GSYEELAKDPNV   67 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSS----------HHHHHHHHHHHTCSCEE-----SSHHHHHHCTTC
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCC----------HHHHHHHHHHcCCCccc-----CCHHHHhcCCCC
Confidence            58999999999999998887643   5899999873          45555555443321111     13456774 479


Q ss_pred             ceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEec
Q 012750          329 DVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTILP  378 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~viP  378 (457)
                      |+++-|.. +..+.+.+.. +  +..++||=   |+  | .++++   ..+++|+.+..
T Consensus        68 D~V~i~tp-~~~H~~~~~~al~~GkhVl~EK---P~a~~~~e~~~l~~~a~~~~~~~~v  122 (334)
T 3ohs_X           68 EVAYVGTQ-HPQHKAAVMLCLAAGKAVLCEK---PMGVNAAEVREMVTEARSRGLFLME  122 (334)
T ss_dssp             CEEEECCC-GGGHHHHHHHHHHTTCEEEEES---SSSSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEECCC-cHHHHHHHHHHHhcCCEEEEEC---CCCCCHHHHHHHHHHHHHhCCEEEE
Confidence            99988853 3334333322 2  34688884   53  2 34444   34567765543

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=92.05  E-value=2.2  Score=44.50  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=27.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHC--CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER--GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~  284 (457)
                      ++|+|+|.|.||..+|..|.+.  |.+|++ .|.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~-~D~   42 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTV-VDM   42 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEE-ECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEE-EEC
Confidence            5899999999999999999988  789884 465

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.04  E-value=6.1  Score=41.11  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+++|+|.|-||..+|-.|+++|.+|+++ |.+
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~-Did   53 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGY-DVN   53 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEE-CSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEE-ECC
Confidence            58999999999999999999999999964 764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.94  E-value=0.24  Score=50.74  Aligned_cols=36  Identities=19%  Similarity=0.154  Sum_probs=32.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG  286 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  286 (457)
                      +.+++|.|+|+|.+|..+++.+...|++|+ ++|.+.
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~-v~D~~~  205 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVR-AFDTRP  205 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCCH
Confidence            678999999999999999999999999876 677753

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=91.83  E-value=0.58  Score=45.68  Aligned_cols=109  Identities=17%  Similarity=0.269  Sum_probs=62.9

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-ccc
Q 012750          251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HEC  328 (457)
Q Consensus       251 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~  328 (457)
                      +..||+|||+ |++|+..++.|.+.|.++|+..|....     |-          +...+.-|+     +-+++.+ .++
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~-----g~----------~~~G~~vy~-----sl~el~~~~~~   65 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG-----GT----------THLGLPVFN-----TVREAVAATGA   65 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-----TC----------EETTEEEES-----SHHHHHHHHCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcc-----cc----------eeCCeeccC-----CHHHHhhcCCC
Confidence            4578999999 999999999998889998866555310     00          000011111     1234443 267


Q ss_pred             ceeeccccCCccccccccc---ccceEEEecCCCCCCH---HHHHHHHhCCCeEe-ccc
Q 012750          329 DVLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDP---EADEILSKRGVTIL-PDI  380 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~---~a~~iL~~rGI~vi-PD~  380 (457)
                      |+.+-|.... ...+.+..   -+.+.+++.+-+....   +..++.+++|+.++ |..
T Consensus        66 D~viI~tP~~-~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liGPNc  123 (288)
T 2nu8_A           66 TASVIYVPAP-FCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNT  123 (288)
T ss_dssp             CEEEECCCGG-GHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSC
T ss_pred             CEEEEecCHH-HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEecCC
Confidence            8877765432 23333322   3567766655443222   34456778899665 654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=91.83  E-value=0.38  Score=47.32  Aligned_cols=73  Identities=15%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccC-CCCeec-CCCccccccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF-DGGDSM-EPSELLAHEC  328 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~-~~~~~i-~~~ell~~~~  328 (457)
                      .-++|+|+|.|.+|+..|..|. .|..|+ +.|.+          .+.+.+..+.  -.... .+.+.. +.++  -.+|
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~-v~d~~----------~~~~~~~~~~--l~~~~~~~i~~~~~~~~--~~~a   74 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVV-LQDVS----------EKALEAAREQ--IPEELLSKIEFTTTLEK--VKDC   74 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEE-EECSC----------HHHHHHHHHH--SCGGGGGGEEEESSCTT--GGGC
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEE-EEECC----------HHHHHHHHHH--HHHHHhCCeEEeCCHHH--HcCC
Confidence            3579999999999999999999 999987 55552          4455444433  00000 011111 2233  2488


Q ss_pred             ceeeccccCCc
Q 012750          329 DVLIPCALGGV  339 (457)
Q Consensus       329 DIliPaA~~~~  339 (457)
                      |++|.|..++.
T Consensus        75 DlVieavpe~~   85 (293)
T 1zej_A           75 DIVMEAVFEDL   85 (293)
T ss_dssp             SEEEECCCSCH
T ss_pred             CEEEEcCcCCH
Confidence            88888876653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.75  E-value=0.24  Score=50.72  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +.+.+|+|+|+|.+|..+++.+...|++|+ +.|.+
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~-v~D~~  216 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTT-GYDVR  216 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEE-EECSS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            688999999999999999999999999977 67765

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=91.72  E-value=3.9  Score=42.34  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=27.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHC--CCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER--GGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~  285 (457)
                      ++|+|+|.|.||..+|..|.+.  |.+|+ +.|.+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~-~~d~~   39 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVT-VVDVN   39 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEE-EECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEECC
Confidence            5899999999999999999998  78987 45653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=91.67  E-value=0.45  Score=45.17  Aligned_cols=88  Identities=13%  Similarity=0.178  Sum_probs=53.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl  331 (457)
                      ++|.|+|.|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+.. +.+...     ... +.+++  .+||++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~-~~g~~~-----~~~~~~~~~--~~~D~v   61 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLI-GVSRQ----------QSTCEKAV-ERQLVD-----EAGQDLSLL--QTAKII   61 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHH-HTTSCS-----EEESCGGGG--TTCSEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHH-hCCCCc-----cccCCHHHh--CCCCEE
Confidence            479999999999999999999999877 44542          33443332 222110     111 23344  689999


Q ss_pred             eccccCCccccccc----cccc-ceEEEecCCCC
Q 012750          332 IPCALGGVLKRENA----ADVK-AKFIIEAANHP  360 (457)
Q Consensus       332 iPaA~~~~It~~na----~~i~-akiIvEgAN~p  360 (457)
                      +-|.....+ .+-+    +.++ -++|+.-+|..
T Consensus        62 i~av~~~~~-~~~~~~l~~~~~~~~~vv~~~~~~   94 (279)
T 2f1k_A           62 FLCTPIQLI-LPTLEKLIPHLSPTAIVTDVASVK   94 (279)
T ss_dssp             EECSCHHHH-HHHHHHHGGGSCTTCEEEECCSCC
T ss_pred             EEECCHHHH-HHHHHHHHhhCCCCCEEEECCCCc
Confidence            999765422 2222    2232 35778776643

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=91.49  E-value=0.21  Score=46.14  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=28.0

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +.++..++|+|+|.|++|+.+++.|.+.|.+|+ +.|.
T Consensus        14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~-~~~~   50 (209)
T 2raf_A           14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVT-YYGS   50 (209)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCEEE-EECT
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcC
Confidence            455888999999999999999999999999987 4454

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.29  E-value=0.16  Score=48.28  Aligned_cols=116  Identities=11%  Similarity=0.228  Sum_probs=63.3

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      .+++|++|.|+|.|.||...++.|.+.|++|+-|+ .       + ++ +++.++.++ +.+.-..+  ...+++ + ..
T Consensus        27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVva-p-------~-~~-~~l~~l~~~-~~i~~i~~--~~~~~d-L-~~   91 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVA-P-------T-VS-AEINEWEAK-GQLRVKRK--KVGEED-L-LN   91 (223)
T ss_dssp             ECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEEC-S-------S-CC-HHHHHHHHT-TSCEEECS--CCCGGG-S-SS
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC-C-------C-CC-HHHHHHHHc-CCcEEEEC--CCCHhH-h-CC
Confidence            47999999999999999999999999999998443 3       2 22 335444443 22211100  111222 2 26


Q ss_pred             cceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCcee
Q 012750          328 CDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTV  389 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~  389 (457)
                      +|++|-|.--..+|..-+..-+.++.|.-+..|          +.+=.++|.++ +-|++.+
T Consensus        92 adLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p----------~~~~f~~Paiv-~rg~l~i  142 (223)
T 3dfz_A           92 VFFIVVATNDQAVNKFVKQHIKNDQLVNMASSF----------SDGNIQIPAQF-SRGRLSL  142 (223)
T ss_dssp             CSEEEECCCCTHHHHHHHHHSCTTCEEEC---------------CCSEECCEEE-EETTEEE
T ss_pred             CCEEEECCCCHHHHHHHHHHHhCCCEEEEeCCc----------ccCeEEEeeEE-EeCCEEE
Confidence            888887754444443322222233444333332          13446777553 4466644

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.18  E-value=0.31  Score=49.02  Aligned_cols=34  Identities=32%  Similarity=0.488  Sum_probs=30.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++++|.|.|.|.+|+.+++.+...|++|+ +.|.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~-~~d~  197 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGAQVT-ILDV  197 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEEC
Confidence            789999999999999999999999999987 5554

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=91.04  E-value=0.71  Score=40.25  Aligned_cols=100  Identities=16%  Similarity=0.120  Sum_probs=57.9

Q ss_pred             CCeEEEEec----ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          252 DLTFVIQGF----GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       252 g~~vaIqGf----GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      -++|+|+|.    |++|..+++.|.+.|++|..|        ||++   +++       ..+.-|+     +.+++- .+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~V--------np~~---~~i-------~G~~~y~-----sl~~l~-~~   77 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPV--------NPKY---EEV-------LGRKCYP-----SVLDIP-DK   77 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--------CTTC---SEE-------TTEECBS-----SGGGCS-SC
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEE--------CCCC---CeE-------CCeeccC-----CHHHcC-CC
Confidence            468999999    799999999999999987655        3332   000       0111122     122322 25


Q ss_pred             cceeeccccCCccccccc---ccccceEEEecCCCCCCHHHHHHHHhCCCeEe
Q 012750          328 CDVLIPCALGGVLKRENA---ADVKAKFIIEAANHPTDPEADEILSKRGVTIL  377 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na---~~i~akiIvEgAN~p~t~~a~~iL~~rGI~vi  377 (457)
                      +|+.+-|.... ...+-+   -+..+|.|+--. +....+..++.++.|+.++
T Consensus        78 vDlvvi~vp~~-~~~~vv~~~~~~gi~~i~~~~-g~~~~~l~~~a~~~Gi~vv  128 (144)
T 2d59_A           78 IEVVDLFVKPK-LTMEYVEQAIKKGAKVVWFQY-NTYNREASKKADEAGLIIV  128 (144)
T ss_dssp             CSEEEECSCHH-HHHHHHHHHHHHTCSEEEECT-TCCCHHHHHHHHHTTCEEE
T ss_pred             CCEEEEEeCHH-HHHHHHHHHHHcCCCEEEECC-CchHHHHHHHHHHcCCEEE
Confidence            67666553221 111111   122344555332 2347888899999999987

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.04  E-value=0.22  Score=50.52  Aligned_cols=35  Identities=34%  Similarity=0.473  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++.|++|.|+|+|.+|+.+++.+...|++|+ +.|.
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~-~~d~  199 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVT-VLDI  199 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEeC
Confidence            4789999999999999999999999999987 5555

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=90.95  E-value=2.3  Score=42.71  Aligned_cols=32  Identities=34%  Similarity=0.597  Sum_probs=27.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      .||.|=|||-+|+.+.|.+.+.   ...||||-|.
T Consensus         3 ~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~   37 (335)
T 3doc_A            3 VRVAINGFGRIGRNILRAIVESGRTDIQVVAINDL   37 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECS
T ss_pred             EEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            4799999999999999988876   5789999875

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=90.88  E-value=2  Score=43.40  Aligned_cols=36  Identities=28%  Similarity=0.449  Sum_probs=29.2

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .+...+|+|=|||-+|+.+++.+.+. ...||+|.|.
T Consensus         8 ~~~~~kv~INGfGrIGr~v~ra~~~~~~~evvaInd~   44 (345)
T 2b4r_O            8 HMAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDP   44 (345)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECT
T ss_pred             chhheEEEEeCCchHHHHHHHHHhhCCCcEEEEEcCC
Confidence            35678999999999999999998765 5799999984

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=90.87  E-value=0.35  Score=45.35  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++|+++.|.|. |.+|+.+++.|.++|++|+ +.|.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~-~~~r   38 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVI-VSDI   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            478999999985 8999999999999999988 5554

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=90.78  E-value=0.25  Score=49.43  Aligned_cols=103  Identities=18%  Similarity=0.280  Sum_probs=60.6

Q ss_pred             CCeEEEEecChHHHH-HHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc-cc
Q 012750          252 DLTFVIQGFGNVGSW-AARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA-HE  327 (457)
Q Consensus       252 g~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~-~~  327 (457)
                      -.+|+|+|+|++|+. .+..|.+. +++|+||+|.+          .+.+.   +      .+++.... +.++++. .+
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~----------~~~~~---~------~~~~~~~~~~~~~ll~~~~   67 (364)
T 3e82_A            7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRD----------EEKVK---R------DLPDVTVIASPEAAVQHPD   67 (364)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSC----------HHHHH---H------HCTTSEEESCHHHHHTCTT
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCC----------HHHHH---h------hCCCCcEECCHHHHhcCCC
Confidence            468999999999986 67777654 89999999984          23332   1      12233322 3356664 47


Q ss_pred             cceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          328 CDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      +|+++-|... ..+.+.+.. +  ..-++||=   |+  | .++++   ..+++|+.+.
T Consensus        68 ~D~V~i~tp~-~~H~~~~~~al~aGk~Vl~EK---Pla~~~~e~~~l~~~a~~~g~~~~  122 (364)
T 3e82_A           68 VDLVVIASPN-ATHAPLARLALNAGKHVVVDK---PFTLDMQEARELIALAEEKQRLLS  122 (364)
T ss_dssp             CSEEEECSCG-GGHHHHHHHHHHTTCEEEECS---CSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEeCCh-HHHHHHHHHHHHCCCcEEEeC---CCcCCHHHHHHHHHHHHHhCCeEE
Confidence            8988888543 333333222 2  34577763   42  2 33433   3456676654

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=90.75  E-value=0.18  Score=50.28  Aligned_cols=104  Identities=17%  Similarity=0.286  Sum_probs=62.6

Q ss_pred             CCCeEEEEecChHHHH-HHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc-c
Q 012750          251 RDLTFVIQGFGNVGSW-AARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA-H  326 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~-~  326 (457)
                      +-.+|+|+|+|++|.. .+..|.+. +++|+||+|.+          .+.+   .++      |++.... +.++++. .
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~----------~~~~---~~~------~~~~~~~~~~~~ll~~~   64 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSR----------TEEV---KRD------FPDAEVVHELEEITNDP   64 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSC----------HHHH---HHH------CTTSEEESSTHHHHTCT
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCC----------HHHH---Hhh------CCCCceECCHHHHhcCC
Confidence            3468999999999986 67777654 89999999984          2332   121      2233322 4456775 4


Q ss_pred             ccceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          327 ECDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       327 ~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      ++|+++-|... ..+.+.+.. +  ...++||=   |+  | .++++   ..+++|+.+.
T Consensus        65 ~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EK---Pla~~~~e~~~l~~~a~~~g~~~~  120 (358)
T 3gdo_A           65 AIELVIVTTPS-GLHYEHTMACIQAGKHVVMEK---PMTATAEEGETLKRAADEKGVLLS  120 (358)
T ss_dssp             TCCEEEECSCT-TTHHHHHHHHHHTTCEEEEES---SCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCEEEEcCCc-HHHHHHHHHHHHcCCeEEEec---CCcCCHHHHHHHHHHHHHcCCeEE
Confidence            79999988643 333333322 2  34678874   42  2 34443   3446676654

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=90.69  E-value=0.18  Score=50.31  Aligned_cols=73  Identities=30%  Similarity=0.343  Sum_probs=46.1

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHH-H-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC-cccCCCCeecCCCcccc
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIH-E-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS-LKDFDGGDSMEPSELLA  325 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~-~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~-~~~~~~~~~i~~~ell~  325 (457)
                      .++..+|+|+|+|++|+..++.|. + .+++|++|+|.+-          +.+.+..++.+- ...|     -+.++++.
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~----------~~~~~~a~~~g~~~~~~-----~~~~~ll~   84 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVA----------GRAQAALDKYAIEAKDY-----NDYHDLIN   84 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSST----------THHHHHHHHHTCCCEEE-----SSHHHHHH
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCH----------HHHHHHHHHhCCCCeee-----CCHHHHhc
Confidence            355679999999999999998887 4 4899999999742          233333333221 1111     13345554


Q ss_pred             c-ccceeecccc
Q 012750          326 H-ECDVLIPCAL  336 (457)
Q Consensus       326 ~-~~DIliPaA~  336 (457)
                      . ++|+++-|..
T Consensus        85 ~~~~D~V~i~tp   96 (357)
T 3ec7_A           85 DKDVEVVIITAS   96 (357)
T ss_dssp             CTTCCEEEECSC
T ss_pred             CCCCCEEEEcCC
Confidence            3 6788776653

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=90.63  E-value=0.086  Score=54.37  Aligned_cols=109  Identities=12%  Similarity=0.103  Sum_probs=66.4

Q ss_pred             CCCeEEEEec----ChHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcc
Q 012750          251 RDLTFVIQGF----GNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSEL  323 (457)
Q Consensus       251 ~g~~vaIqGf----GnVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~el  323 (457)
                      +-.||+|+|+    |.+|...++.|.+.  +++||+|+|.+          .+.+.+..++.+.    +..... +.+++
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~----------~~~~~~~a~~~g~----~~~~~~~~~~~l   84 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPK----------IETSIATIQRLKL----SNATAFPTLESF   84 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSS----------HHHHHHHHHHTTC----TTCEEESSHHHH
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCC----------HHHHHHHHHHcCC----CcceeeCCHHHH
Confidence            4478999999    99999888888876  78999999973          4555554444321    111112 34567


Q ss_pred             cc-cccceeeccccCCccccccccc-c--c------ceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          324 LA-HECDVLIPCALGGVLKRENAAD-V--K------AKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       324 l~-~~~DIliPaA~~~~It~~na~~-i--~------akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      ++ .++|+++-|+... .+.+.+.. +  .      ..++||=   |+  | .++++   ..+++|+.+.
T Consensus        85 l~~~~vD~V~i~tp~~-~H~~~~~~al~aG~~~~~~khVl~EK---P~a~~~~e~~~l~~~a~~~g~~~~  150 (438)
T 3btv_A           85 ASSSTIDMIVIAIQVA-SHYEVVMPLLEFSKNNPNLKYLFVEW---ALACSLDQAESIYKAAAERGVQTI  150 (438)
T ss_dssp             HHCSSCSEEEECSCHH-HHHHHHHHHHHHGGGCTTCCEEEEES---SCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred             hcCCCCCEEEEeCCcH-HHHHHHHHHHHCCCCcccceeEEecC---cccCCHHHHHHHHHHHHHcCCeEE
Confidence            75 4799999886432 22222222 2  2      3488883   43  3 34443   3457777654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.62  E-value=0.11  Score=54.36  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .++|+|.|+|.||+.+|+.|.+.|..|+ |-|.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~-vId~   34 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDIT-IVDK   34 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEE-EEES
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEE-EEEC
Confidence            5789999999999999999999999988 5565

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=90.59  E-value=0.73  Score=46.73  Aligned_cols=33  Identities=30%  Similarity=0.707  Sum_probs=30.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..+|+|-|||.||+.+.+.|.++...||+|.|.
T Consensus        21 ~~kVaInGfGrIGr~vlr~l~e~~~~ivaIndl   53 (356)
T 3hja_A           21 SMKLAINGFGRIGRNVFKIAFERGIDIVAINDL   53 (356)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CeEEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            478999999999999999999989999999886

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=90.57  E-value=4.7  Score=40.43  Aligned_cols=32  Identities=31%  Similarity=0.593  Sum_probs=28.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .||.|=|||.+|+.+.|.+.+. ...||||-|.
T Consensus         2 ~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~   34 (332)
T 3pym_A            2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDP   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHSTTCEEEEEECT
T ss_pred             eEEEEECCCcHHHHHHHHHHhCCCcEEEEEeCC
Confidence            4799999999999999988775 5899999875

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=90.57  E-value=0.37  Score=46.34  Aligned_cols=36  Identities=14%  Similarity=0.208  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +|+||++.|.| -+.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vv-i~~r~   42 (247)
T 4hp8_A            6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVV-CAARR   42 (247)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEE-EEeCC
Confidence            68999999988 47899999999999999998 66664

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=90.47  E-value=0.27  Score=48.63  Aligned_cols=71  Identities=13%  Similarity=0.166  Sum_probs=44.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHC--------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHER--------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPS  321 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~--------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~  321 (457)
                      ++..||+|+|+|.+|+.-++.|.+.        +++|+||+|.+          .+.+.+..++.+.-.-|.     +.+
T Consensus         4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~----------~~~a~~~a~~~g~~~~~~-----d~~   68 (390)
T 4h3v_A            4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRD----------AEAVRAAAGKLGWSTTET-----DWR   68 (390)
T ss_dssp             CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSS----------HHHHHHHHHHHTCSEEES-----CHH
T ss_pred             CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCC----------HHHHHHHHHHcCCCcccC-----CHH
Confidence            5667999999999998777666542        45899999973          556655555433211111     224


Q ss_pred             cccc-cccceeeccc
Q 012750          322 ELLA-HECDVLIPCA  335 (457)
Q Consensus       322 ell~-~~~DIliPaA  335 (457)
                      ++|+ .++|+++=|+
T Consensus        69 ~ll~~~~iDaV~I~t   83 (390)
T 4h3v_A           69 TLLERDDVQLVDVCT   83 (390)
T ss_dssp             HHTTCTTCSEEEECS
T ss_pred             HHhcCCCCCEEEEeC
Confidence            4553 3566665553

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=90.29  E-value=0.24  Score=48.68  Aligned_cols=108  Identities=13%  Similarity=0.190  Sum_probs=60.4

Q ss_pred             CCCeEEEEecChHHH-HHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-ccc
Q 012750          251 RDLTFVIQGFGNVGS-WAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HEC  328 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~-~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~  328 (457)
                      +-.+|+|+|+|++|. ..+..|...+++|++|+|.+-     +     .+.+..++.+...-|     -+.+++++ .++
T Consensus         3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~-----~-----~~~~~a~~~~~~~~~-----~~~~~ll~~~~~   67 (336)
T 2p2s_A            3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDS-----D-----NRAKFTSLFPSVPFA-----ASAEQLITDASI   67 (336)
T ss_dssp             -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCT-----T-----SCHHHHHHSTTCCBC-----SCHHHHHTCTTC
T ss_pred             CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCH-----H-----HHHHHHHhcCCCccc-----CCHHHHhhCCCC
Confidence            447899999999996 566767678999999999842     2     222222222211112     12356664 478


Q ss_pred             ceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCCeEe
Q 012750          329 DVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKRGVTIL  377 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~i---L~~rGI~vi  377 (457)
                      |+++-|+... .+.+.+.. +  ..-+++|=   |+  | .+++++   .+++|+.+.
T Consensus        68 D~V~i~tp~~-~h~~~~~~al~aGkhVl~EK---P~a~~~~e~~~l~~~a~~~g~~~~  121 (336)
T 2p2s_A           68 DLIACAVIPC-DRAELALRTLDAGKDFFTAK---PPLTTLEQLDAVQRRVAETGRKFA  121 (336)
T ss_dssp             CEEEECSCGG-GHHHHHHHHHHTTCEEEECS---SCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred             CEEEEeCChh-hHHHHHHHHHHCCCcEEEeC---CCCCCHHHHHHHHHHHHHcCCEEE
Confidence            9888775432 23222222 2  22477763   43  2 344433   456676554

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=90.25  E-value=0.37  Score=47.65  Aligned_cols=109  Identities=18%  Similarity=0.136  Sum_probs=66.8

Q ss_pred             CCCCeEEEEecC-hHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-
Q 012750          250 IRDLTFVIQGFG-NVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-  325 (457)
Q Consensus       250 l~g~~vaIqGfG-nVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-  325 (457)
                      -+-.||+|+|+| .+|...+..|.+.  +++|++|+|.+          .+.+.+..++.+...-|     -+.+++++ 
T Consensus        16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~----------~~~~~~~a~~~~~~~~~-----~~~~~ll~~   80 (340)
T 1zh8_A           16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT----------RSHAEEFAKMVGNPAVF-----DSYEELLES   80 (340)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSS----------HHHHHHHHHHHSSCEEE-----SCHHHHHHS
T ss_pred             CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCC----------HHHHHHHHHHhCCCccc-----CCHHHHhcC
Confidence            355799999999 7999888888765  68999999973          45555555443321111     13356664 


Q ss_pred             cccceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCCeEe
Q 012750          326 HECDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKRGVTIL  377 (457)
Q Consensus       326 ~~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~i---L~~rGI~vi  377 (457)
                      .++|+++-|+.. ..+.+-+.. +  +.-+++|=   |+  | .+++++   .+++|+.+.
T Consensus        81 ~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EK---Pla~~~~ea~~l~~~a~~~g~~~~  137 (340)
T 1zh8_A           81 GLVDAVDLTLPV-ELNLPFIEKALRKGVHVICEK---PISTDVETGKKVVELSEKSEKTVY  137 (340)
T ss_dssp             SCCSEEEECCCG-GGHHHHHHHHHHTTCEEEEES---SSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred             CCCCEEEEeCCc-hHHHHHHHHHHHCCCcEEEeC---CCCCCHHHHHHHHHHHHHcCCeEE
Confidence            479999988643 233332222 2  33688884   53  3 455443   356776654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=90.05  E-value=0.2  Score=49.51  Aligned_cols=52  Identities=29%  Similarity=0.388  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHhCC-----CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          234 GVVYATEALLAEHGQ-----AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       234 Gv~~~~~~~l~~~g~-----~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |.-|+=+-+|+.+|.     .|+..+|.|+|.|-+|+.+++.|...|..=+.|.|.+
T Consensus        13 ~~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           13 GLVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             -------------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCchHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            333444445555554     2889999999999999999999999997555577654

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=90.02  E-value=0.24  Score=49.42  Aligned_cols=71  Identities=8%  Similarity=0.063  Sum_probs=46.9

Q ss_pred             CCCCeEEEEecChHHHH-HHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc-
Q 012750          250 IRDLTFVIQGFGNVGSW-AARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA-  325 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~-  325 (457)
                      ++..+|+|+|+|++|+. .++.|.+. +++|++|+|.+          .+.+.+..++      |++.... +.+++++ 
T Consensus         3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~------~~~~~~~~~~~~ll~~   66 (359)
T 3m2t_A            3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSD----------LERARRVHRF------ISDIPVLDNVPAMLNQ   66 (359)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSS----------HHHHGGGGGT------SCSCCEESSHHHHHHH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCC----------HHHHHHHHHh------cCCCcccCCHHHHhcC
Confidence            34579999999999984 78888765 78999999873          4444443332      2222222 3456664 


Q ss_pred             cccceeecccc
Q 012750          326 HECDVLIPCAL  336 (457)
Q Consensus       326 ~~~DIliPaA~  336 (457)
                      .++|+++-|..
T Consensus        67 ~~vD~V~i~tp   77 (359)
T 3m2t_A           67 VPLDAVVMAGP   77 (359)
T ss_dssp             SCCSEEEECSC
T ss_pred             CCCCEEEEcCC
Confidence            46788887744

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=90.00  E-value=0.1  Score=49.28  Aligned_cols=53  Identities=13%  Similarity=0.136  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH--HHCCCEEEEEECCC
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI--HERGGKVIAVSDIT  285 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~  285 (457)
                      ||-|-.-.+..-+.+|.+ +..+|+|.|.|+.|+.+++.+  .+.|.++||+.|.+
T Consensus        65 GY~V~~L~~~i~~~Lg~~-~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~d  119 (212)
T 3keo_A           65 GYDVKKLMNFFAEILNDH-STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLD  119 (212)
T ss_dssp             SEEHHHHHHHHHHHTTTT-SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECT
T ss_pred             CEEHHHHHHHHHHHhCCC-CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCC
Confidence            445555555554566766 557999999999999999874  45689999999874

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=89.97  E-value=0.28  Score=43.14  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=28.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ..|+|+|.|..|..+|..|.++|.+|+ |.|..
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~-v~Ek~   34 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVH-LFDKS   34 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEE-EECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEE-EEECC
Confidence            359999999999999999999999988 88863

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=89.88  E-value=0.6  Score=47.95  Aligned_cols=31  Identities=35%  Similarity=0.593  Sum_probs=27.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|.||..+|..|.+.|.+|++ .|.
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~-~d~   31 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIG-VDV   31 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE-ECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEE-EEC
Confidence            4799999999999999999999999874 465

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=89.86  E-value=0.53  Score=46.24  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=59.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCC----CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERG----GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELL  324 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell  324 (457)
                      ++.++|.|+|.|++|..++..|.+.|    ..|+ +.|.+.     +   .+.+.+..+. |       .... ++.+.+
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~-v~~r~~-----~---~~~~~~l~~~-G-------~~~~~~~~e~~   82 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIM-ASSPDM-----D---LATVSALRKM-G-------VKLTPHNKETV   82 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEE-EECSCT-----T---SHHHHHHHHH-T-------CEEESCHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEE-EECCCc-----c---HHHHHHHHHc-C-------CEEeCChHHHh
Confidence            34468999999999999999999999    5665 555531     1   0122222221 2       1211 122322


Q ss_pred             ccccceeeccccCCcccc---ccccccc-ceEEEecCCCCCCHHHHHHHHh
Q 012750          325 AHECDVLIPCALGGVLKR---ENAADVK-AKFIIEAANHPTDPEADEILSK  371 (457)
Q Consensus       325 ~~~~DIliPaA~~~~It~---~na~~i~-akiIvEgAN~p~t~~a~~iL~~  371 (457)
                       .+||++|-|.....+.+   +-.+.++ -++|+.-+|+-......+.|.+
T Consensus        83 -~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~  132 (322)
T 2izz_A           83 -QHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSA  132 (322)
T ss_dssp             -HHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHT
T ss_pred             -ccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhh
Confidence             37999999876432221   1122333 4689988886443444566765

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=89.81  E-value=0.35  Score=44.48  Aligned_cols=35  Identities=14%  Similarity=0.363  Sum_probs=29.3

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +++|++|.|.|. |.+|+++++.|.+.|++|++++-
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R   53 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVR   53 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Confidence            478999999996 99999999999999999996653

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=89.76  E-value=0.2  Score=48.11  Aligned_cols=85  Identities=9%  Similarity=0.108  Sum_probs=44.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      ++|.|+|.|++|+.+++.|.+. .+|+.+.|.+          .+.+.+..++.+.  .+     -+.++++. +||++|
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~----------~~~~~~~~~~~g~--~~-----~~~~~~~~-~~DvVi   63 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRS----------IDRARNLAEVYGG--KA-----ATLEKHPE-LNGVVF   63 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSS----------HHHHHHHHHHTCC--CC-----CSSCCCCC----CEE
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCC----------HHHHHHHHHHcCC--cc-----CCHHHHHh-cCCEEE
Confidence            4799999999999999988776 6665555542          3444444333222  11     13344443 688888


Q ss_pred             ccccCCcccccccccc--cceEEEecC
Q 012750          333 PCALGGVLKRENAADV--KAKFIIEAA  357 (457)
Q Consensus       333 PaA~~~~It~~na~~i--~akiIvEgA  357 (457)
                      -|...+.+ .+-+..+  +-++|+.-+
T Consensus        64 lav~~~~~-~~v~~~l~~~~~ivi~~s   89 (276)
T 2i76_A           64 VIVPDRYI-KTVANHLNLGDAVLVHCS   89 (276)
T ss_dssp             ECSCTTTH-HHHHTTTCCSSCCEEECC
T ss_pred             EeCChHHH-HHHHHHhccCCCEEEECC
Confidence            87665542 2333333  234565544

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=89.70  E-value=0.32  Score=45.76  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++|+++.|.| .|.+|+++++.|.++|++|+ +.|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~r   40 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVA-IADI   40 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            57899999998 58999999999999999998 4444

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=89.67  E-value=0.3  Score=48.31  Aligned_cols=37  Identities=14%  Similarity=0.285  Sum_probs=27.8

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHH--------CCCEEEEEECCC
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHE--------RGGKVIAVSDIT  285 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~--------~GakVVaVsD~~  285 (457)
                      +++..||+|+|+|.+|+.-++.+..        .+++||||+|.+
T Consensus        22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~   66 (393)
T 4fb5_A           22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEAN   66 (393)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC-
T ss_pred             CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCC
Confidence            3677899999999999876654432        378999999984

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=89.57  E-value=0.45  Score=47.55  Aligned_cols=112  Identities=23%  Similarity=0.277  Sum_probs=61.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC-Ccccc--cc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP-SELLA--HE  327 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~-~ell~--~~  327 (457)
                      +.+||+|.|.|.||+.+++.|.+ ...|. ++|.+          .+.+.+..+....+ ..   . +++ +++.+  .+
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~-~~~~~----------~~~~~~~~~~~~~~-~~---d-~~d~~~l~~~~~~   77 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVY-IGDVN----------NENLEKVKEFATPL-KV---D-ASNFDKLVEVMKE   77 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEE-EEESC----------HHHHHHHTTTSEEE-EC---C-TTCHHHHHHHHTT
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeE-EEEcC----------HHHHHHHhccCCcE-EE---e-cCCHHHHHHHHhC
Confidence            44689999999999999999975 45665 56653          34443332211000 00   0 111 22222  38


Q ss_pred             cceeeccccCCccccccccc---ccceEEEecCCCC-CCHHHHHHHHhCCCeEecccc
Q 012750          328 CDVLIPCALGGVLKRENAAD---VKAKFIIEAANHP-TDPEADEILSKRGVTILPDIY  381 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p-~t~~a~~iL~~rGI~viPD~l  381 (457)
                      +|++|-|+... .+..-++.   -++.+| .-+--+ ...+-++..+++|+.++|+.=
T Consensus        78 ~DvVi~~~p~~-~~~~v~~~~~~~g~~yv-D~s~~~~~~~~l~~~a~~~g~~~i~~~G  133 (365)
T 3abi_A           78 FELVIGALPGF-LGFKSIKAAIKSKVDMV-DVSFMPENPLELRDEAEKAQVTIVFDAG  133 (365)
T ss_dssp             CSEEEECCCGG-GHHHHHHHHHHHTCEEE-ECCCCSSCGGGGHHHHHHTTCEEECCCB
T ss_pred             CCEEEEecCCc-ccchHHHHHHhcCcceE-eeeccchhhhhhhhhhccCCceeeecCC
Confidence            89999886543 33322221   233333 333222 334556778889999998753

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=89.55  E-value=3.7  Score=41.26  Aligned_cols=32  Identities=44%  Similarity=0.725  Sum_probs=27.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .||.|=|||-+|+.+.|.+.+. ...||+|-|.
T Consensus         5 ~kv~INGfGrIGr~v~R~~~~~~~~~ivaind~   37 (338)
T 3lvf_P            5 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDL   37 (338)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECS
T ss_pred             EEEEEECCCcHHHHHHHHHHHCCCceEEEEecC
Confidence            4899999999999999988765 5799999883

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=89.44  E-value=3.5  Score=41.54  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=28.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .||.|=|||-+|+.+.|.+.+. ...||||-|.
T Consensus         5 ~kv~INGfGrIGr~v~Ra~~~~~~~~ivaINd~   37 (345)
T 4dib_A            5 TRVAINGFGRIGRMVFRQAIKESAFEIVAINAS   37 (345)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTCSSSEEEEEECS
T ss_pred             EEEEEECCCcHHHHHHHHHHhCCCceEEEEcCC
Confidence            5899999999999999988765 5899999885

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=89.40  E-value=0.42  Score=45.27  Aligned_cols=37  Identities=19%  Similarity=0.385  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEECCC
Q 012750          248 QAIRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       248 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+|+||+++|.|-+   -+|..+|+.|.+.|++|+ ++|.+
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vv-i~~r~   41 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLV-FTYRK   41 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEE-EEECC
Confidence            36899999999963   599999999999999998 66653

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=89.35  E-value=0.79  Score=46.25  Aligned_cols=74  Identities=16%  Similarity=0.259  Sum_probs=46.4

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHHCC-CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc-ccCCCCeecCCCcccccc
Q 012750          251 RDLTFVIQG-FGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL-KDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       251 ~g~~vaIqG-fGnVG~~~a~~L~~~G-akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~-~~~~~~~~i~~~ell~~~  327 (457)
                      +..+|+|.| +|.+|+.+++.|.++. .+|+++.|..     +.|..++.....+.  +.+ .++   ..-+ ++.+. +
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~-----~~g~~~~~~~~~~~--~~v~~dl---~~~~-~~~~~-~   82 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADR-----KAGQSMESVFPHLR--AQKLPTL---VSVK-DADFS-T   82 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCST-----TTTSCHHHHCGGGT--TSCCCCC---BCGG-GCCGG-G
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCch-----hcCCCHHHhCchhc--Ccccccc---eecc-hhHhc-C
Confidence            457999999 9999999999998765 5999998863     34555444322111  110 011   0111 34454 7


Q ss_pred             cceeecccc
Q 012750          328 CDVLIPCAL  336 (457)
Q Consensus       328 ~DIliPaA~  336 (457)
                      ||+++.|+.
T Consensus        83 vDvVf~atp   91 (359)
T 1xyg_A           83 VDAVFCCLP   91 (359)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEcCC
Confidence            999998863

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=89.33  E-value=0.19  Score=47.36  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHH--HHHCCCEEEEEECCC
Q 012750          246 HGQAIRDLTFVIQGFGNVGSWAARL--IHERGGKVIAVSDIT  285 (457)
Q Consensus       246 ~g~~l~g~~vaIqGfGnVG~~~a~~--L~~~GakVVaVsD~~  285 (457)
                      +|.+ +..+|+|+|.|++|+.+++.  +...|+++||+.|.+
T Consensus        80 lg~~-~~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~d  120 (215)
T 2vt3_A           80 LDQD-EMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDIN  120 (215)
T ss_dssp             HHHC----CEEEECCSHHHHHHHHCC------CCEEEEEESC
T ss_pred             hCcC-CCCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCC
Confidence            3443 34689999999999999994  345689999999874

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=89.26  E-value=1.1  Score=39.17  Aligned_cols=110  Identities=11%  Similarity=0.148  Sum_probs=62.5

Q ss_pred             CCeEEEEec----ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          252 DLTFVIQGF----GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       252 g~~vaIqGf----GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      -++|+|+|.    |++|..+++.|.+.|++|..|        ||+..        .++-..+.-|+     +.+++- .+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~v--------np~~~--------g~~i~G~~~~~-----sl~el~-~~   70 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPV--------SPKVA--------GKTLLGQQGYA-----TLADVP-EK   70 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEE--------CSSST--------TSEETTEECCS-----STTTCS-SC
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEe--------CCccc--------ccccCCeeccC-----CHHHcC-CC
Confidence            468999999    899999999999999986543        33210        00000111121     223332 36


Q ss_pred             cceeeccccCCcccccccc---cccce-EEEecCCCCCCHHHHHHHHhCCCeEe-cccccccCCceeh
Q 012750          328 CDVLIPCALGGVLKRENAA---DVKAK-FIIEAANHPTDPEADEILSKRGVTIL-PDIYANSGGVTVS  390 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~---~i~ak-iIvEgAN~p~t~~a~~iL~~rGI~vi-PD~laNaGGVi~S  390 (457)
                      +|+.+-|.... ...+-++   +.++| +++..  +-.+.+..+.++++|+.++ |    |+=|++..
T Consensus        71 ~Dlvii~vp~~-~v~~v~~~~~~~g~~~i~i~~--~~~~~~l~~~a~~~Gi~~igp----nc~g~~~~  131 (145)
T 2duw_A           71 VDMVDVFRNSE-AAWGVAQEAIAIGAKTLWLQL--GVINEQAAVLAREAGLSVVMD----RCPAIELP  131 (145)
T ss_dssp             CSEEECCSCST-HHHHHHHHHHHHTCCEEECCT--TCCCHHHHHHHHTTTCEEECS----CCHHHHST
T ss_pred             CCEEEEEeCHH-HHHHHHHHHHHcCCCEEEEcC--ChHHHHHHHHHHHcCCEEEcC----CeeeEEcc
Confidence            78777664422 2222221   12333 55543  2347888889999999987 4    44455443

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=88.83  E-value=0.25  Score=49.15  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++++|+|+|+|++|+.+|+.|.+.|.+|+ +.|.+
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~-~~~~~   48 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVT-VGLRS   48 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEE-EECCT
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEE-EEECC
Confidence            567899999999999999999999999887 55553

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=88.71  E-value=0.22  Score=50.19  Aligned_cols=105  Identities=20%  Similarity=0.322  Sum_probs=62.3

Q ss_pred             CeEEEEecC-hHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc-ccc
Q 012750          253 LTFVIQGFG-NVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH-ECD  329 (457)
Q Consensus       253 ~~vaIqGfG-nVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~-~~D  329 (457)
                      .+|+|+|+| .+|...+..|.+. +++|++|+|.+          .+...+..++.+ +..|     -+.++++.. ++|
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~~g-~~~~-----~~~~ell~~~~vD   66 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPN----------EDVRERFGKEYG-IPVF-----ATLAEMMQHVQMD   66 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSC----------HHHHHHHHHHHT-CCEE-----SSHHHHHHHSCCS
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCC----------HHHHHHHHHHcC-CCeE-----CCHHHHHcCCCCC
Confidence            689999999 9998888888764 78999999873          445544444322 1111     134567754 789


Q ss_pred             eeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          330 VLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       330 IliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      +++-|.... .+.+.+.. +  ...+++|=   |+  | .++++   ..+++|+.+.
T Consensus        67 ~V~i~tp~~-~H~~~~~~al~aGk~Vl~EK---P~a~~~~e~~~l~~~a~~~g~~~~  119 (387)
T 3moi_A           67 AVYIASPHQ-FHCEHVVQASEQGLHIIVEK---PLTLSRDEADRMIEAVERAGVHLV  119 (387)
T ss_dssp             EEEECSCGG-GHHHHHHHHHHTTCEEEECS---CCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred             EEEEcCCcH-HHHHHHHHHHHCCCceeeeC---CccCCHHHHHHHHHHHHHhCCeEE
Confidence            998875432 23332222 1  33577773   42  2 33433   3456666543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=88.55  E-value=0.41  Score=45.21  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=30.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++++|.|.|.|-+|+++++.|.+.|.+|++++..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~   35 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRS   35 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4678999999999999999999999999987644

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=88.35  E-value=0.34  Score=49.02  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=27.6

Q ss_pred             CeEEEEecChHHHHHHHHHHH---------CCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE---------RGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~---------~GakVVaVsD~~  285 (457)
                      .||+|+|+|.+|+.-++.|.+         .+++||||+|.+
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~   68 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQD   68 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSS
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCC
Confidence            699999999999987777754         367999999973

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=88.17  E-value=0.34  Score=47.83  Aligned_cols=83  Identities=16%  Similarity=0.215  Sum_probs=53.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC  328 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~  328 (457)
                      +..||+|+|+|++|+..++.|.+. +.++++|+|.+..-    .+  .              + +.... +.++++ .++
T Consensus         2 ~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~----~~--~--------------~-gv~~~~d~~~ll-~~~   59 (320)
T 1f06_A            2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL----DT--K--------------T-PVFDVADVDKHA-DDV   59 (320)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC----SS--S--------------S-CEEEGGGGGGTT-TTC
T ss_pred             CCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH----hh--c--------------C-CCceeCCHHHHh-cCC
Confidence            346899999999999999988775 78999999975311    01  0              1 11111 234566 689


Q ss_pred             ceeeccccCCccccccccc-c--cceEEEec
Q 012750          329 DVLIPCALGGVLKRENAAD-V--KAKFIIEA  356 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~-i--~akiIvEg  356 (457)
                      |+++-|..... +.+++.. +  +..+|+|-
T Consensus        60 DvViiatp~~~-h~~~~~~al~aG~~Vv~ek   89 (320)
T 1f06_A           60 DVLFLCMGSAT-DIPEQAPKFAQFACTVDTY   89 (320)
T ss_dssp             SEEEECSCTTT-HHHHHHHHHTTTSEEECCC
T ss_pred             CEEEEcCCcHH-HHHHHHHHHHCCCEEEECC
Confidence            99998875543 3333322 2  34677764

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=88.15  E-value=0.44  Score=49.20  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++++++|.|+|.|..|..+|++|.++|++|. ++|.+
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~-~~D~~   41 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVT-VNDGK   41 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEE-EEESS
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEE-EEeCC
Confidence            4789999999999999999999999999998 78874

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=88.07  E-value=0.5  Score=45.12  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++|+++.|.| .|.+|+.+|+.|.+.|++|+.+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~   62 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWG   62 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEc
Confidence            468999999998 48999999999999999998554

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=88.06  E-value=0.82  Score=48.02  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=28.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -++|+|+|.|++|+.+|..|.+.|..|+ +.|.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~-l~D~   36 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVL-LYDI   36 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEE-EECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEE-EEEC
Confidence            3589999999999999999999999987 5565

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=88.02  E-value=0.63  Score=44.23  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=30.6

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++|+++.|.| .|.+|+.+|+.|.+.|++|+.+.
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~   37 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAA   37 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            468899999998 58999999999999999998543

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=87.94  E-value=0.25  Score=51.65  Aligned_cols=72  Identities=11%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             CCCeEEEEec----ChHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcc
Q 012750          251 RDLTFVIQGF----GNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSEL  323 (457)
Q Consensus       251 ~g~~vaIqGf----GnVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~el  323 (457)
                      +-.+|+|+|+    |.+|...++.|.+.  +++|+||+|.+          .+.+.+..++.+.    +..... +.+++
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~----------~~~a~~~a~~~g~----~~~~~~~d~~el  103 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPT----------LKSSLQTIEQLQL----KHATGFDSLESF  103 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSC----------HHHHHHHHHHTTC----TTCEEESCHHHH
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCC----------HHHHHHHHHHcCC----CcceeeCCHHHH
Confidence            3478999999    99999889888875  78999999973          4455554444321    111122 33567


Q ss_pred             cc-cccceeecccc
Q 012750          324 LA-HECDVLIPCAL  336 (457)
Q Consensus       324 l~-~~~DIliPaA~  336 (457)
                      ++ .++|+++-|+.
T Consensus       104 l~~~~vD~V~I~tp  117 (479)
T 2nvw_A          104 AQYKDIDMIVVSVK  117 (479)
T ss_dssp             HHCTTCSEEEECSC
T ss_pred             hcCCCCCEEEEcCC
Confidence            74 47899988864

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=87.89  E-value=0.99  Score=45.22  Aligned_cols=32  Identities=28%  Similarity=0.193  Sum_probs=27.9

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCC-CEEEEEECC
Q 012750          253 LTFVIQG-FGNVGSWAARLIHERG-GKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqG-fGnVG~~~a~~L~~~G-akVVaVsD~  284 (457)
                      .+|+|.| +|.+|+.+++.|.++. ..++++++.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~   38 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSR   38 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECc
Confidence            6899999 8999999999998764 599988875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=87.80  E-value=0.55  Score=45.20  Aligned_cols=32  Identities=28%  Similarity=0.218  Sum_probs=28.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|+|+|.|++|+.+|..|.+.|++|+ +.|.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~-l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVT-AYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence            589999999999999999999999987 56653

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=87.78  E-value=0.42  Score=45.60  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++|+++.|.|. |.+|+.+|+.|.+.|++|+.+ |.
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~-~~   43 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAV-DI   43 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE-EC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE-ec
Confidence            4589999999985 889999999999999999854 44

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=87.78  E-value=0.51  Score=49.40  Aligned_cols=32  Identities=19%  Similarity=0.089  Sum_probs=28.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|+|+|.|.+|..+|..|.+.|..|+ +.|.+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~-l~D~~   86 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETF-LVVRN   86 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEE-EEECc
Confidence            689999999999999999999999998 66764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=87.61  E-value=0.54  Score=48.90  Aligned_cols=35  Identities=31%  Similarity=0.460  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++|++|+|+|.|.||...+++|.+.|++|+-|+
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~   42 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNA   42 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEE
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEc
Confidence            46889999999999999999999999999998444

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=87.37  E-value=1.5  Score=43.71  Aligned_cols=41  Identities=27%  Similarity=0.353  Sum_probs=33.7

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750          243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       243 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      ++..+....|.+|.|+|.|.||..+++++...|++|+++..
T Consensus       179 l~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~  219 (366)
T 1yqd_A          179 LKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVIST  219 (366)
T ss_dssp             HHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            44445444789999999999999999999999999986653

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=87.34  E-value=0.53  Score=46.10  Aligned_cols=105  Identities=14%  Similarity=0.156  Sum_probs=59.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-ccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HEC  328 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~  328 (457)
                      +..||+|+|+|++|+..++.|.+ .+.+|++|+|.+.     +     .+.+    .| +. |   .  +.+++++ .++
T Consensus         8 ~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~-----~-----~~~~----~g-~~-~---~--~~~~l~~~~~~   66 (304)
T 3bio_A            8 KKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNP-----A-----EVPF----EL-QP-F---R--VVSDIEQLESV   66 (304)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CC-TT-S---C--EESSGGGSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCH-----H-----HHHH----cC-CC-c---C--CHHHHHhCCCC
Confidence            45799999999999999998877 5789999998742     1     1111    11 11 1   1  1123333 489


Q ss_pred             ceeeccccCCccccccccc---ccceEEEecCC-CCCCHHHH---HHHHhCCCeEe
Q 012750          329 DVLIPCALGGVLKRENAAD---VKAKFIIEAAN-HPTDPEAD---EILSKRGVTIL  377 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~---i~akiIvEgAN-~p~t~~a~---~iL~~rGI~vi  377 (457)
                      |+++-|+.. ..+.+.+..   -+..+|+|--- .+...+++   +..++.|+.+.
T Consensus        67 DvViiatp~-~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~  121 (304)
T 3bio_A           67 DVALVCSPS-REVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAV  121 (304)
T ss_dssp             CEEEECSCH-HHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEE
T ss_pred             CEEEECCCc-hhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence            999988643 233333332   24567877211 11122333   44567776543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=87.19  E-value=0.28  Score=46.79  Aligned_cols=36  Identities=22%  Similarity=0.447  Sum_probs=30.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++++|+|+|.|.+|+.+++.|.+.|..-+.+.|.+
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            456899999999999999999999998444477765

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=87.18  E-value=2.1  Score=41.70  Aligned_cols=112  Identities=18%  Similarity=0.153  Sum_probs=63.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc-CCCCe------ecCCCcccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD-FDGGD------SMEPSELLA  325 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~-~~~~~------~i~~~ell~  325 (457)
                      ++|+|+|.|++|..+|..|.+.|..|+. .+.+.         .+.+.+   .+-.+.+ +.+..      ..++.+-+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~-~~r~~---------~~~i~~---~Gl~~~~~~~g~~~~~~~~~~~~~~~~~   69 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSV-VSRSD---------YETVKA---KGIRIRSATLGDYTFRPAAVVRSAAELE   69 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEE-ECSTT---------HHHHHH---HCEEEEETTTCCEEECCSCEESCGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEE-EeCCh---------HHHHHh---CCcEEeecCCCcEEEeeeeeECCHHHcC
Confidence            6899999999999999999999998874 44421         233322   1101221 11111      112212222


Q ss_pred             cccceeeccccCCccccccccc----cc-ceEEEecCCCCCC-HHHHHHHHhCCCeEec
Q 012750          326 HECDVLIPCALGGVLKRENAAD----VK-AKFIIEAANHPTD-PEADEILSKRGVTILP  378 (457)
Q Consensus       326 ~~~DIliPaA~~~~It~~na~~----i~-akiIvEgAN~p~t-~~a~~iL~~rGI~viP  378 (457)
                      .++|+++-|.-...+. +.++.    ++ -.+|+--.|+--. ....+.|-+..|+..|
T Consensus        70 ~~~DlVilavK~~~~~-~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl~g~  127 (320)
T 3i83_A           70 TKPDCTLLCIKVVEGA-DRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVISGL  127 (320)
T ss_dssp             SCCSEEEECCCCCTTC-CHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEEEEE
T ss_pred             CCCCEEEEecCCCChH-HHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEEEEE
Confidence            3799999886555433 33333    32 2577888888643 4444555555454433

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=86.98  E-value=0.31  Score=48.21  Aligned_cols=104  Identities=14%  Similarity=0.247  Sum_probs=61.2

Q ss_pred             CeEEEEecChHHHH-HHH-HHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc-c
Q 012750          253 LTFVIQGFGNVGSW-AAR-LIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH-E  327 (457)
Q Consensus       253 ~~vaIqGfGnVG~~-~a~-~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~-~  327 (457)
                      .||+|+|+|++|+. .+. .|. ..+++|++|+|.+-     +     .. +.      ...+++.... +.+++++. +
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~-----~-----~~-~~------~~~~~~~~~~~~~~~ll~~~~   65 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHA-----K-----PE-EQ------APIYSHIHFTSDLDEVLNDPD   65 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSC-----C-----GG-GG------SGGGTTCEEESCTHHHHTCTT
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCH-----h-----HH-HH------HHhcCCCceECCHHHHhcCCC
Confidence            58999999999985 566 433 35899999999842     1     11 11      1223333333 44667754 7


Q ss_pred             cceeeccccCCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          328 CDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      +|+++-|.. +..+.+.+..   -+..+++|   -|+  | .++++   ..+++|+.+.
T Consensus        66 ~D~V~i~tp-~~~h~~~~~~al~aGk~Vl~E---KP~a~~~~e~~~l~~~a~~~g~~~~  120 (345)
T 3f4l_A           66 VKLVVVCTH-ADSHFEYAKRALEAGKNVLVE---KPFTPTLAQAKELFALAKSKGLTVT  120 (345)
T ss_dssp             EEEEEECSC-GGGHHHHHHHHHHTTCEEEEC---SSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCEEEEcCC-hHHHHHHHHHHHHcCCcEEEe---CCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            999998864 3333333322   24478888   343  3 34443   3456776554

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=86.93  E-value=0.69  Score=47.51  Aligned_cols=113  Identities=11%  Similarity=0.104  Sum_probs=64.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-----CCCcc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-----EPSEL  323 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-----~~~el  323 (457)
                      ++..||+|+|+|.+|...++.|.+. +++|++|+|.+          .+.+.+..+.-.. .+++.....     +.+++
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~----------~~~~~~~a~~~~~-~g~~~~~~~~~~~~~~~~l   86 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPD----------PYMVGRAQEILKK-NGKKPAKVFGNGNDDYKNM   86 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSC----------HHHHHHHHHHHHH-TTCCCCEEECSSTTTHHHH
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCC----------HHHHHHHHHHHHh-cCCCCCceeccCCCCHHHH
Confidence            3557999999999999888888764 78999999974          3444443321000 012222222     33567


Q ss_pred             cc-cccceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCCeEe
Q 012750          324 LA-HECDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKRGVTIL  377 (457)
Q Consensus       324 l~-~~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~i---L~~rGI~vi  377 (457)
                      ++ .++|+++-|+... .+.+.+.. +  ..-++||   -|+  | .+++++   .+++|+.+.
T Consensus        87 l~~~~vD~V~i~tp~~-~h~~~~~~al~aGkhV~~E---KP~a~~~~ea~~l~~~a~~~g~~~~  146 (444)
T 2ixa_A           87 LKDKNIDAVFVSSPWE-WHHEHGVAAMKAGKIVGME---VSGAITLEECWDYVKVSEQTGVPLM  146 (444)
T ss_dssp             TTCTTCCEEEECCCGG-GHHHHHHHHHHTTCEEEEC---CCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred             hcCCCCCEEEEcCCcH-HHHHHHHHHHHCCCeEEEe---CCCcCCHHHHHHHHHHHHHhCCeEE
Confidence            75 4789988886532 33333322 2  3357777   343  3 344433   356676543

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=86.92  E-value=0.56  Score=47.39  Aligned_cols=109  Identities=11%  Similarity=0.090  Sum_probs=63.0

Q ss_pred             CCCCeEEEEecCh---HHHHHHHHHHHC-CCEEEE-EECCCCeeeCCCCCCHHHHHHhHhhcCCc--ccCCCCeecCCCc
Q 012750          250 IRDLTFVIQGFGN---VGSWAARLIHER-GGKVIA-VSDITGAVKNADGIDIHKLLAHKDKTGSL--KDFDGGDSMEPSE  322 (457)
Q Consensus       250 l~g~~vaIqGfGn---VG~~~a~~L~~~-GakVVa-VsD~~G~iynp~GLDi~~L~~~~~~~g~~--~~~~~~~~i~~~e  322 (457)
                      ++..||+|+|+|.   +|+.-+..+... ++++++ |+|.+          .+...+..++.+.-  .-|.     +.++
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~----------~~~a~~~a~~~g~~~~~~~~-----~~~~   74 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDID----------PIRGSAFGEQLGVDSERCYA-----DYLS   74 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSS----------HHHHHHHHHHTTCCGGGBCS-----SHHH
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCC----------HHHHHHHHHHhCCCcceeeC-----CHHH
Confidence            4567999999999   998877766655 489998 77873          45555555443211  1121     3356


Q ss_pred             cccc------ccceeeccccCCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          323 LLAH------ECDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       323 ll~~------~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      +++.      ++|+++=|+.. ..+.+.+..   -..-++||=   |+  | .++++   ..+++|+.+.
T Consensus        75 ll~~~~~~~~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EK---Pla~~~~ea~~l~~~a~~~g~~~~  140 (398)
T 3dty_A           75 MFEQEARRADGIQAVSIATPN-GTHYSITKAALEAGLHVVCEK---PLCFTVEQAENLRELSHKHNRIVG  140 (398)
T ss_dssp             HHHHHTTCTTCCSEEEEESCG-GGHHHHHHHHHHTTCEEEECS---CSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred             HHhcccccCCCCCEEEECCCc-HHHHHHHHHHHHCCCeEEEeC---CCcCCHHHHHHHHHHHHHcCCeEE
Confidence            6653      58888866432 233333222   133677763   42  2 34443   3456676554

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=86.86  E-value=0.33  Score=46.75  Aligned_cols=96  Identities=17%  Similarity=0.211  Sum_probs=55.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-----C-CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC-CcccCCCC------eecC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-----G-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTG-SLKDFDGG------DSME  319 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-----G-akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g-~~~~~~~~------~~i~  319 (457)
                      ++|.|+|.|++|+.++..|.+.     | ..|+ +.|. .          +.+.++.++.| .+...++.      ...+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r-~----------~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~   76 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVS-WIAR-G----------AHLEAIRAAGGLRVVTPSRDFLARPTCVTD   76 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEE-EECC-H----------HHHHHHHHHTSEEEECSSCEEEECCSEEES
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEE-EEEc-H----------HHHHHHHhcCCeEEEeCCCCeEEecceEec
Confidence            5899999999999999999988     8 8877 4443 1          22333333122 12211111      1112


Q ss_pred             CCcccccccceeeccccCCccccccccc----cc-ceEEEecCCCCCC
Q 012750          320 PSELLAHECDVLIPCALGGVLKRENAAD----VK-AKFIIEAANHPTD  362 (457)
Q Consensus       320 ~~ell~~~~DIliPaA~~~~It~~na~~----i~-akiIvEgAN~p~t  362 (457)
                      +.+. ..++|+++-|.....+ .+-++.    ++ -++|+--.|+.-+
T Consensus        77 ~~~~-~~~~D~vil~vk~~~~-~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           77 NPAE-VGTVDYILFCTKDYDM-ERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             CHHH-HCCEEEEEECCSSSCH-HHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             Cccc-cCCCCEEEEecCcccH-HHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            2222 2479999988765543 332222    32 3578888888643

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=86.67  E-value=2.2  Score=42.17  Aligned_cols=115  Identities=15%  Similarity=0.192  Sum_probs=67.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHh-hcCCcccCCCCeecCCCccccccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKD-KTGSLKDFDGGDSMEPSELLAHEC  328 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~-~~g~~~~~~~~~~i~~~ell~~~~  328 (457)
                      ..+++.|+|.|..|+..++.|.+ .+.+-|.|.|.+         ..+++.+... +.+ +    .....+.++.+ .+|
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---------~a~~la~~l~~~~g-~----~~~~~~~~eav-~~a  184 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---------ASPEILERIGRRCG-V----PARMAAPADIA-AQA  184 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---------CCHHHHHHHHHHHT-S----CEEECCHHHHH-HHC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---------HHHHHHHHHHHhcC-C----eEEEeCHHHHH-hhC
Confidence            56899999999999999998876 455545476665         2344443322 111 1    01112333333 379


Q ss_pred             ceeeccccCC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 012750          329 DVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIY  381 (457)
Q Consensus       329 DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~l  381 (457)
                      ||++-|....  .+..+-. +-.+-++.=|+..|-..|.+..+.+++-.++-|..
T Consensus       185 DIVi~aT~s~~pvl~~~~l-~~G~~V~~vGs~~p~~~El~~~~~~~a~~v~vD~~  238 (313)
T 3hdj_A          185 DIVVTATRSTTPLFAGQAL-RAGAFVGAIGSSLPHTRELDDEALRRARAVVVEWR  238 (313)
T ss_dssp             SEEEECCCCSSCSSCGGGC-CTTCEEEECCCSSTTCCCCCHHHHHHCSEEEESCH
T ss_pred             CEEEEccCCCCcccCHHHc-CCCcEEEECCCCCCchhhcCHHHHhcCCEEEECCH
Confidence            9999887542  3332211 12456777788877555555555556655556643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=86.45  E-value=0.57  Score=43.26  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=54.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV  330 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI  330 (457)
                      ..++|.|+|.|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+.        +....+..+.+ .+||+
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~-~~~r~----------~~~~~~~~~~--------g~~~~~~~~~~-~~~Dv   86 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVV-VGSRN----------PKRTARLFPS--------AAQVTFQEEAV-SSPEV   86 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEE-EEESS----------HHHHHHHSBT--------TSEEEEHHHHT-TSCSE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc--------CCceecHHHHH-hCCCE
Confidence            34689999999999999999999999877 45542          2333332221        11212223333 37999


Q ss_pred             eeccccCCccccccc---ccccceEEEecCCCC
Q 012750          331 LIPCALGGVLKRENA---ADVKAKFIIEAANHP  360 (457)
Q Consensus       331 liPaA~~~~It~~na---~~i~akiIvEgAN~p  360 (457)
                      ++-|.....+ .+-.   ..++-++|+.-+|+.
T Consensus        87 Vi~av~~~~~-~~v~~l~~~~~~~~vv~~s~g~  118 (215)
T 2vns_A           87 IFVAVFREHY-SSLCSLSDQLAGKILVDVSNPT  118 (215)
T ss_dssp             EEECSCGGGS-GGGGGGHHHHTTCEEEECCCCC
T ss_pred             EEECCChHHH-HHHHHHHHhcCCCEEEEeCCCc
Confidence            9988765432 1111   112457899988875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=86.34  E-value=0.75  Score=44.49  Aligned_cols=32  Identities=25%  Similarity=0.316  Sum_probs=28.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|+|+|.|++|..+|..|.+.|.+|+ +.|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~-~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVV-LVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEE-EEECC
Confidence            579999999999999999999999987 56653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=86.32  E-value=1.2  Score=44.79  Aligned_cols=97  Identities=11%  Similarity=0.003  Sum_probs=56.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe-----ecCC--Ccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD-----SMEP--SEL  323 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~-----~i~~--~el  323 (457)
                      ..++|+|+|.|++|..+|..|.+.|..|+ +.|.+          .+.+.+..+.+.....+|+..     ..+.  .+.
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~-l~~r~----------~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea   96 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVR-LWSYE----------SDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKAS   96 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEE-EECSC----------HHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHH
Confidence            44789999999999999999999999877 44542          334444333322211122211     1111  122


Q ss_pred             cccccceeeccccCCccccccc----cccc-ceEEEecCCCC
Q 012750          324 LAHECDVLIPCALGGVLKRENA----ADVK-AKFIIEAANHP  360 (457)
Q Consensus       324 l~~~~DIliPaA~~~~It~~na----~~i~-akiIvEgAN~p  360 (457)
                      + .++|++|-|.....+ .+.+    +.++ -++|+-.+|+-
T Consensus        97 ~-~~aDvVilaVp~~~~-~~vl~~i~~~l~~~~ivvs~~kGi  136 (356)
T 3k96_A           97 L-EGVTDILIVVPSFAF-HEVITRMKPLIDAKTRIAWGTKGL  136 (356)
T ss_dssp             H-TTCCEEEECCCHHHH-HHHHHHHGGGCCTTCEEEECCCSC
T ss_pred             H-hcCCEEEECCCHHHH-HHHHHHHHHhcCCCCEEEEEeCCC
Confidence            2 378999988654322 2222    2232 35788888864

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=86.32  E-value=0.57  Score=47.09  Aligned_cols=32  Identities=25%  Similarity=0.488  Sum_probs=29.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .||+|.|||.+|+.+++.|.++ +..||+|.|.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~   35 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKT   35 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEES
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            4899999999999999999876 6899999995

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=86.20  E-value=0.71  Score=46.28  Aligned_cols=35  Identities=34%  Similarity=0.418  Sum_probs=30.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++++|.|.|.|.+|+.+++.+...|++|+ +.|.+
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~-v~dr~  199 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQ-IFDIN  199 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEeCC
Confidence            667999999999999999999999999877 66663

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=86.19  E-value=0.74  Score=45.69  Aligned_cols=30  Identities=23%  Similarity=0.309  Sum_probs=26.4

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+|+|.|++|..+|..|.+.|..|+ +.|.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~-~~~r   46 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVC-VWHM   46 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEE-EECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEE-EEEC
Confidence            89999999999999999999998876 4554

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=86.18  E-value=0.97  Score=39.87  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=28.9

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750          251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       251 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      ++++|.|.|. |.+|+++++.|.++|.+|++++-
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r   35 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR   35 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence            3478999996 99999999999999999997654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=86.09  E-value=0.79  Score=43.57  Aligned_cols=101  Identities=17%  Similarity=0.191  Sum_probs=58.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGG--KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD  329 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D  329 (457)
                      ++|.|+|+|++|+.+++.|.+.|.  +|+ +.|.+          .+.+.... +.|...     ... +.++.+..+||
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d~~----------~~~~~~~~-~~g~~~-----~~~~~~~~~~~~~aD   64 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYDIN----------PESISKAV-DLGIID-----EGTTSIAKVEDFSPD   64 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEE-EECSC----------HHHHHHHH-HTTSCS-----EEESCGGGGGGTCCS
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEE-EEeCC----------HHHHHHHH-HCCCcc-----cccCCHHHHhcCCCC
Confidence            479999999999999999999998  776 45542          33333322 222210     111 22343322799


Q ss_pred             eeeccccCCccccccc----ccc-cceEEEecCCCCCC--HHHHHHHHh
Q 012750          330 VLIPCALGGVLKRENA----ADV-KAKFIIEAANHPTD--PEADEILSK  371 (457)
Q Consensus       330 IliPaA~~~~It~~na----~~i-~akiIvEgAN~p~t--~~a~~iL~~  371 (457)
                      +++-|.....+ .+-+    +.+ +-.+|+..+|....  ....+.+.+
T Consensus        65 vVilavp~~~~-~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~  112 (281)
T 2g5c_A           65 FVMLSSPVRTF-REIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK  112 (281)
T ss_dssp             EEEECSCHHHH-HHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred             EEEEcCCHHHH-HHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc
Confidence            99998755432 1222    223 23588888887642  223345544

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=86.08  E-value=1.8  Score=44.39  Aligned_cols=77  Identities=26%  Similarity=0.474  Sum_probs=52.1

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGG---KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA  325 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~  325 (457)
                      -...+|+|.|. |+||.++++.+...|+   .|. +.|.+            .-    ...+.   |        +++  
T Consensus       212 ~~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~-v~D~~------------~~----~~g~~---~--------~~i--  261 (394)
T 2qrj_A          212 ARKPTVLIIGALGRCGSGAIDLLHKVGIPDANIL-KWDIK------------ET----SRGGP---F--------DEI--  261 (394)
T ss_dssp             CCCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEE-EECHH------------HH----TTCSC---C--------THH--
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceE-Eeecc------------cc----ccCCc---h--------hhH--
Confidence            35678999999 9999999999999998   554 65542            10    00111   1        222  


Q ss_pred             cccceeecccc-----CCcccccccccc--cceEEEec
Q 012750          326 HECDVLIPCAL-----GGVLKRENAADV--KAKFIIEA  356 (457)
Q Consensus       326 ~~~DIliPaA~-----~~~It~~na~~i--~akiIvEg  356 (457)
                      .++||+|-|++     ...||.+-+.+.  +-.+||+=
T Consensus       262 ~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDV  299 (394)
T 2qrj_A          262 PQADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDV  299 (394)
T ss_dssp             HHSSEEEECCCCCSSCCCSCCHHHHCCTTCCCCEEEET
T ss_pred             hhCCEEEECcCcCCCCCcccCHHHHhcCcCCCeEEEEE
Confidence            28999999998     456777777665  33566654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=86.07  E-value=0.76  Score=45.04  Aligned_cols=32  Identities=25%  Similarity=0.272  Sum_probs=29.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|+|+|.|.+|..+|..|.+.|.+|+ |.|.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~-v~Er~   33 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVT-IYERN   33 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEE-EEecC
Confidence            689999999999999999999999988 87754

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=85.84  E-value=0.87  Score=46.43  Aligned_cols=109  Identities=12%  Similarity=0.132  Sum_probs=63.7

Q ss_pred             CCCCeEEEEecCh---HHHHHHHHHHHCC-CEEEE-EECCCCeeeCCCCCCHHHHHHhHhhcCCc--ccCCCCeecCCCc
Q 012750          250 IRDLTFVIQGFGN---VGSWAARLIHERG-GKVIA-VSDITGAVKNADGIDIHKLLAHKDKTGSL--KDFDGGDSMEPSE  322 (457)
Q Consensus       250 l~g~~vaIqGfGn---VG~~~a~~L~~~G-akVVa-VsD~~G~iynp~GLDi~~L~~~~~~~g~~--~~~~~~~~i~~~e  322 (457)
                      ++..||+|+|+|.   +|..-+..+...+ ++||+ |+|.+          .+...+..++.+.-  .-|     -+.++
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~----------~~~a~~~a~~~g~~~~~~~-----~~~~~   99 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSST----------PEKAEASGRELGLDPSRVY-----SDFKE   99 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSS----------HHHHHHHHHHHTCCGGGBC-----SCHHH
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCC----------HHHHHHHHHHcCCCccccc-----CCHHH
Confidence            4567999999999   9988777766654 78986 88873          45555555443211  112     13356


Q ss_pred             cccc------ccceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          323 LLAH------ECDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       323 ll~~------~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      +++.      ++|+++=|+.. ..+.+.+.. +  ..-++||=   |+  | .++++   ..+++|+.+.
T Consensus       100 ll~~~~~~~~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl~EK---Pla~~~~ea~~l~~~a~~~g~~~~  165 (417)
T 3v5n_A          100 MAIREAKLKNGIEAVAIVTPN-HVHYAAAKEFLKRGIHVICDK---PLTSTLADAKKLKKAADESDALFV  165 (417)
T ss_dssp             HHHHHHHCTTCCSEEEECSCT-TSHHHHHHHHHTTTCEEEEES---SSCSSHHHHHHHHHHHHHCSSCEE
T ss_pred             HHhcccccCCCCcEEEECCCc-HHHHHHHHHHHhCCCeEEEEC---CCcCCHHHHHHHHHHHHHcCCEEE
Confidence            6653      58998877543 333333322 2  33588884   42  2 34444   3456777554

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=85.83  E-value=0.69  Score=49.07  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=28.0

Q ss_pred             CCC-CeEEEEecChHHHHHHHHHHHC------CCEEE
Q 012750          250 IRD-LTFVIQGFGNVGSWAARLIHER------GGKVI  279 (457)
Q Consensus       250 l~g-~~vaIqGfGnVG~~~a~~L~~~------GakVV  279 (457)
                      ++| ++|+|+|+|++|...|+-|.+.      |.+|+
T Consensus        51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~Vi   87 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK   87 (525)
T ss_dssp             TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEE
Confidence            788 9999999999999999999988      99877

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=85.81  E-value=0.84  Score=43.09  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=27.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|.|+|.|++|+.+|..|.+.|..|+. .|.+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~-~~r~   32 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQG-WLRV   32 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEE-EEcC
Confidence            4799999999999999999999999874 4543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=85.80  E-value=0.5  Score=45.11  Aligned_cols=36  Identities=25%  Similarity=0.370  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++++|.|.|.|.+|+.+++.|...|..-+.|.|.+
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            467899999999999999999999998666688764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=85.71  E-value=1.1  Score=42.86  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++|+++.|.| .|.+|+.+|+.|.+.|++|+. .|.
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~-~~r   65 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVIL-HGV   65 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EcC
Confidence            358999999998 489999999999999999984 444

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=85.60  E-value=5.7  Score=39.92  Aligned_cols=32  Identities=31%  Similarity=0.564  Sum_probs=27.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .||.|=|||.+|+.+.|.+.+. ...||||-|.
T Consensus         4 ~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~   36 (337)
T 3v1y_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDP   36 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECT
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5899999999999999988776 4789999875

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=85.54  E-value=0.65  Score=43.50  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHH--HHCCCEEEEEECCC
Q 012750          245 EHGQAIRDLTFVIQGFGNVGSWAARLI--HERGGKVIAVSDIT  285 (457)
Q Consensus       245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~  285 (457)
                      .+|.+ +..+|+|+|.|++|+.+++.+  .. |+++||+.|.+
T Consensus        74 ~lg~~-~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~d  114 (211)
T 2dt5_A           74 ILGLN-RKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVD  114 (211)
T ss_dssp             HHTTT-SCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESC
T ss_pred             HhCcC-CCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCC
Confidence            45665 447899999999999999853  34 89999999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=85.23  E-value=1.8  Score=42.80  Aligned_cols=41  Identities=27%  Similarity=0.392  Sum_probs=32.9

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750          243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       243 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +++.+....|.+|+|+|.|.||..+++++...|++|+++..
T Consensus       172 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~  212 (357)
T 2cf5_A          172 LSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS  212 (357)
T ss_dssp             HHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             HHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            33334433789999999999999999999889999986653

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=85.12  E-value=0.96  Score=42.72  Aligned_cols=52  Identities=23%  Similarity=0.233  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHH-HhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          232 GRGVVYATEALLA-EHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       232 g~Gv~~~~~~~l~-~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      .-|+-.+.+.+.- ....+++|++++|.| .|.+|+.+|+.|.++|++|+.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r   61 (271)
T 4iin_A            8 SSGVDLGTENLYFQSNAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYR   61 (271)
T ss_dssp             ----------------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccccccCcceehhhhhhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            3344444444332 445679999999998 489999999999999999986554

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=84.96  E-value=2  Score=41.46  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +++++|.|.| .|-+|+++++.|.++|.+|+++..
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   57 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDN   57 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            4678999999 599999999999999999997764

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=84.63  E-value=0.82  Score=45.53  Aligned_cols=106  Identities=21%  Similarity=0.296  Sum_probs=62.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HE  327 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~  327 (457)
                      ++..+|+|+|+|++|...++.|.+. +++|++|+|.+          .+.+. ..++.+ +..|     -+.++++. .+
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~----------~~~~~-~a~~~g-~~~~-----~~~~~ll~~~~   65 (359)
T 3e18_A            3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDIL----------AEKRE-AAAQKG-LKIY-----ESYEAVLADEK   65 (359)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSS----------HHHHH-HHHTTT-CCBC-----SCHHHHHHCTT
T ss_pred             CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCC----------HHHHH-HHHhcC-Ccee-----CCHHHHhcCCC
Confidence            3457899999999999999888775 88999999874          33332 222211 2112     13355664 47


Q ss_pred             cceeeccccCCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCCeE
Q 012750          328 CDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKRGVTI  376 (457)
Q Consensus       328 ~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~~a~~---iL~~rGI~v  376 (457)
                      +|+++-|... ..+.+.+.. +  ...++||=   |+  | .++++   ..+++|+.+
T Consensus        66 ~D~V~i~tp~-~~h~~~~~~al~aGkhVl~EK---P~a~~~~ea~~l~~~a~~~g~~~  119 (359)
T 3e18_A           66 VDAVLIATPN-DSHKELAISALEAGKHVVCEK---PVTMTSEDLLAIMDVAKRVNKHF  119 (359)
T ss_dssp             CCEEEECSCG-GGHHHHHHHHHHTTCEEEEES---SCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             CCEEEEcCCc-HHHHHHHHHHHHCCCCEEeeC---CCcCCHHHHHHHHHHHHHhCCeE
Confidence            8988877543 223332222 1  33577774   42  2 34443   344566654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=84.46  E-value=1.1  Score=41.07  Aligned_cols=36  Identities=14%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++++++.|.| .|.+|+++++.|.++|++|+.+.+.
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r   38 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSP   38 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence            46789999998 5999999999999999999966454

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=84.21  E-value=1.2  Score=42.68  Aligned_cols=37  Identities=14%  Similarity=0.174  Sum_probs=32.0

Q ss_pred             CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          247 GQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       247 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..+|+||++.|.|- +.+|+.+|+.|.+.|++|+ +.|.
T Consensus         2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv-~~~r   39 (258)
T 4gkb_A            2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPV-VFAR   39 (258)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEEC
Confidence            46799999999984 7899999999999999998 4544

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=84.16  E-value=1.4  Score=40.35  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=30.7

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++++++.|.|. |.+|+++++.|.++|++|+.+.
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~   38 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVT   38 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence            3578999999985 9999999999999999998543

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=84.08  E-value=0.95  Score=44.74  Aligned_cols=89  Identities=18%  Similarity=0.147  Sum_probs=53.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHH--CCCEEEEEECCCCeeeCCCCCCHHH-HHHhHhhcCCcccCCCCeecCCCcccc---
Q 012750          252 DLTFVIQGFGNVGSWAARLIHE--RGGKVIAVSDITGAVKNADGIDIHK-LLAHKDKTGSLKDFDGGDSMEPSELLA---  325 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~--~GakVVaVsD~~G~iynp~GLDi~~-L~~~~~~~g~~~~~~~~~~i~~~ell~---  325 (457)
                      ..+|+|+|+|++|+.+++.|.+  .+.++++|+|.+-     +     . .++..++.+.-. +    .-+.+++++   
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~-----~-----~~~~~~a~~~g~~~-~----~~~~e~ll~~~~   68 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDA-----A-----SDGLARAQRMGVTT-T----YAGVEGLIKLPE   68 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCT-----T-----CHHHHHHHHTTCCE-E----SSHHHHHHHSGG
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCCh-----h-----hhHHHHHHHcCCCc-c----cCCHHHHHhccC
Confidence            4689999999999999999865  5789999999742     1     1 122222222100 0    011234554   


Q ss_pred             -cccceeeccccCCccccccccc---c--cceEEEec
Q 012750          326 -HECDVLIPCALGGVLKRENAAD---V--KAKFIIEA  356 (457)
Q Consensus       326 -~~~DIliPaA~~~~It~~na~~---i--~akiIvEg  356 (457)
                       .++|+++.|+. +..+.+.+..   -  ++.+|+|-
T Consensus        69 ~~~iDvV~~atp-~~~h~~~a~~al~a~~Gk~Vi~ek  104 (312)
T 1nvm_B           69 FADIDFVFDATS-ASAHVQNEALLRQAKPGIRLIDLT  104 (312)
T ss_dssp             GGGEEEEEECSC-HHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCCcEEEECCC-hHHHHHHHHHHHHhCCCCEEEEcC
Confidence             36899998866 4445554444   2  44566644

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=84.06  E-value=0.98  Score=42.43  Aligned_cols=101  Identities=22%  Similarity=0.266  Sum_probs=57.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      ++|.|+|.|++|+.+++.|.+.|.+|+. .|..        -+.+.+.+..+. |       .. -++++++ .+||+++
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~-~~~~--------~~~~~~~~~~~~-g-------~~-~~~~~~~-~~aDvvi   61 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVT-SLEG--------RSPSTIERARTV-G-------VT-ETSEEDV-YSCPVVI   61 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEE-CCTT--------CCHHHHHHHHHH-T-------CE-ECCHHHH-HTSSEEE
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEE-eCCc--------cCHHHHHHHHHC-C-------Cc-CCHHHHH-hcCCEEE
Confidence            4799999999999999999999999874 4431        122333333322 2       11 2333443 3799999


Q ss_pred             ccccCCccccc---ccccccceEEEecCCCCC--CHHHHHHHHhCC
Q 012750          333 PCALGGVLKRE---NAADVKAKFIIEAANHPT--DPEADEILSKRG  373 (457)
Q Consensus       333 PaA~~~~It~~---na~~i~akiIvEgAN~p~--t~~a~~iL~~rG  373 (457)
                      -|.......+.   -.+.++. +|+.-++...  +.+..+.+.++|
T Consensus        62 ~~v~~~~~~~~~~~~~~~~~~-~vi~~s~~~~~~~~~l~~~~~~~g  106 (264)
T 1i36_A           62 SAVTPGVALGAARRAGRHVRG-IYVDINNISPETVRMASSLIEKGG  106 (264)
T ss_dssp             ECSCGGGHHHHHHHHHTTCCS-EEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             EECCCHHHHHHHHHHHHhcCc-EEEEccCCCHHHHHHHHHHHhhCC
Confidence            88765432221   1223344 8887754331  122334455555

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=84.03  E-value=0.96  Score=43.37  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=28.1

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +++++|.|.|. |.+|+++++.|.+.|++|+++.
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~   34 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGAD   34 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE
Confidence            36789999996 9999999999999999999654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=84.00  E-value=0.68  Score=44.21  Aligned_cols=35  Identities=17%  Similarity=0.095  Sum_probs=27.8

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++++++.|.| .|.+|+.+++.|.+.|++|+. .|.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~-~~r   60 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVAL-AGR   60 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EEC
Confidence            36788999988 489999999999999999984 444

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=83.95  E-value=1.2  Score=44.32  Aligned_cols=34  Identities=18%  Similarity=0.275  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +++|+++.|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~   76 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAA   76 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEE
Confidence            489999999984 8999999999999999998554

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=83.88  E-value=0.92  Score=42.59  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .++|.|.|.|.+|+++++.|.++|.+|++++-.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~   37 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRN   37 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcC
Confidence            378999999999999999999999999977643

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=83.87  E-value=1.3  Score=42.40  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=30.4

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +++++|.|.|. |-+|+++++.|.++|++|+++..
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r   43 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR   43 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            67899999996 99999999999999999996653

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=83.87  E-value=1  Score=43.25  Aligned_cols=36  Identities=19%  Similarity=0.227  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+|+||++.|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r   43 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVL-TTAR   43 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEE-EEEC
Confidence            3789999999984 7899999999999999998 4554

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=83.81  E-value=0.46  Score=45.35  Aligned_cols=32  Identities=19%  Similarity=0.061  Sum_probs=28.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  281 (457)
                      ..-++|.|+|.|++|..+++.|.+.|.+|+++
T Consensus         4 ~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~   35 (232)
T 3dfu_A            4 APRLRVGIFDDGSSTVNMAEKLDSVGHYVTVL   35 (232)
T ss_dssp             CCCCEEEEECCSCCCSCHHHHHHHTTCEEEEC
T ss_pred             CCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEe
Confidence            34578999999999999999999999999864

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=83.77  E-value=1.2  Score=42.21  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=30.8

Q ss_pred             CCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          247 GQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       247 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..+++|+++.|.| .|.+|+++++.|.++|++|+. .|.
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~-~~r   43 (281)
T 3svt_A            6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMI-VGR   43 (281)
T ss_dssp             --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             ccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeC
Confidence            3468899999998 589999999999999999984 454

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=83.72  E-value=1.3  Score=37.50  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  285 (457)
                      +.++++|.|.|..|..+++.|.+. |++++|+.|.+
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~   38 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDD   38 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECC
Confidence            457899999999999999999765 89999998863

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=84.19  E-value=0.21  Score=46.03  Aligned_cols=34  Identities=18%  Similarity=0.174  Sum_probs=29.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +.+++|.|+|+|++|+.+++.|.+.|.+|+ +.|.
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~-~~~r   50 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVV-FGSR   50 (201)
Confidence            677899999999999999999999998876 4454

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=83.63  E-value=1  Score=42.18  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             CCCCCeEEEEec-C-hHHHHHHHHHHHCCCEEEEE
Q 012750          249 AIRDLTFVIQGF-G-NVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       249 ~l~g~~vaIqGf-G-nVG~~~a~~L~~~GakVVaV  281 (457)
                      .++++++.|.|. | .+|+.+++.|.++|++|+.+
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~   53 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVIS   53 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEe
Confidence            478999999998 8 59999999999999999854

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=83.61  E-value=0.91  Score=43.63  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+||++.|.| .+.+|+.+|+.|.+.|++|+ ++|.
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv-i~~~   41 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVI-LNDI   41 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-ECCS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            78999999988 48899999999999999998 6665

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=83.61  E-value=0.63  Score=47.80  Aligned_cols=37  Identities=24%  Similarity=0.233  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG  286 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  286 (457)
                      ++++++|.|+|.|..|..+|++|.++|++|+ ++|.+-
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~-~~D~~~   38 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPR-VMDTRM   38 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCE-EEESSS
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEE-EEECCC
Confidence            3678999999999999999999999999998 688754

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=83.57  E-value=1.1  Score=45.00  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=27.1

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCC-CEEEEEEC
Q 012750          253 LTFVIQG-FGNVGSWAARLIHERG-GKVIAVSD  283 (457)
Q Consensus       253 ~~vaIqG-fGnVG~~~a~~L~~~G-akVVaVsD  283 (457)
                      .+|+|.| +|.+|+.+++.|.++. .+|+++.+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~   41 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAA   41 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence            5899999 9999999999998764 68999974

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=83.56  E-value=1.1  Score=43.29  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      ++++++|.|.|. |.+|+++++.|.+.|++|+++.-
T Consensus        17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r   52 (330)
T 2pzm_A           17 RGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDN   52 (330)
T ss_dssp             TTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEEC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            488999999996 99999999999999999997653

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=83.53  E-value=1.4  Score=40.91  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++++++.|.|. |.+|+++++.|.+.|++|+. .|.
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~-~~r   41 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVV-ADI   41 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EcC
Confidence            4578999999984 99999999999999999884 444

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=83.28  E-value=1.6  Score=40.83  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  281 (457)
                      .+++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   37 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLV   37 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            457899999998 5999999999999999999854

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=83.27  E-value=2.6  Score=41.34  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=29.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      -.|.+|+|.|.|.||..+++++...|++|+++.
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~  207 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFA  207 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEe
Confidence            368999999999999999999999999999654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=83.16  E-value=1.2  Score=42.33  Aligned_cols=31  Identities=29%  Similarity=0.495  Sum_probs=28.3

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750          253 LTFVIQGF-GNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       253 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +||.|.|. |-+|+++++.|.++|.+|++++-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R   32 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSR   32 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            57999996 99999999999999999998874

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=83.16  E-value=1.6  Score=41.41  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEec-----------------ChHHHHHHHHHHHCCCEEEEEEC
Q 012750          249 AIRDLTFVIQGF-----------------GNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       249 ~l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +++|++|.|.|-                 |.+|..+|+.|.+.|++|+-++.
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~   56 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSG   56 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEEC
Confidence            478999999987                 79999999999999999986653

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=83.04  E-value=1.7  Score=40.85  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++|+++.|.|. |.+|+.+++.|.++|++|+.+.+.
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   41 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNG   41 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            588999999984 889999999999999999966555

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=83.02  E-value=1.1  Score=40.57  Aligned_cols=94  Identities=16%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccccee
Q 012750          253 LTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIl  331 (457)
                      ++|.|.| .|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..++.+....-.+...-+.++.+ .+||++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~-~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~V   68 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIV-VGSRR----------EEKAEAKAAEYRRIAGDASITGMKNEDAA-EACDIA   68 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEE-EEESS----------HHHHHHHHHHHHHHHSSCCEEEEEHHHHH-HHCSEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHhccccccCCCChhhHHHHH-hcCCEE
Confidence            4799999 99999999999999999987 44542          23333322211100000000111112223 379999


Q ss_pred             eccccCCccccccccc----ccceEEEecCCC
Q 012750          332 IPCALGGVLKRENAAD----VKAKFIIEAANH  359 (457)
Q Consensus       332 iPaA~~~~It~~na~~----i~akiIvEgAN~  359 (457)
                      +-|.....+. +.+..    ++-++|+.-+|+
T Consensus        69 i~~~~~~~~~-~~~~~l~~~~~~~~vi~~~~g   99 (212)
T 1jay_A           69 VLTIPWEHAI-DTARDLKNILREKIVVSPLVP   99 (212)
T ss_dssp             EECSCHHHHH-HHHHHTHHHHTTSEEEECCCC
T ss_pred             EEeCChhhHH-HHHHHHHHHcCCCEEEEcCCC
Confidence            9997654322 22222    245688888884

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=82.92  E-value=0.94  Score=47.81  Aligned_cols=55  Identities=29%  Similarity=0.370  Sum_probs=35.7

Q ss_pred             chHHHHHHHHHHHHHHhC---------CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          230 ATGRGVVYATEALLAEHG---------QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       230 aTg~Gv~~~~~~~l~~~g---------~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.+.|...+++.+++..+         .+++++++.|.|.|.+|+.++..|.+.|++|+ |++.+
T Consensus       333 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~-i~~R~  396 (523)
T 2o7s_A          333 TDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVV-IANRT  396 (523)
T ss_dssp             CHHHHHHHHHHHHC-------------------CEEEECCSHHHHHHHHHHHHHCC-CE-EEESS
T ss_pred             CCHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence            445577777776643211         35789999999999999999999999999876 66653

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=82.89  E-value=1  Score=45.07  Aligned_cols=106  Identities=13%  Similarity=0.083  Sum_probs=59.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc---cc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH---EC  328 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~---~~  328 (457)
                      -++|.|+|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+....+ .|- .     ..-+.++++..   +|
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~-~~dr~----------~~~~~~a~~-~G~-~-----~~~~~~e~~~~a~~~a   69 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVF-GYNRS----------RSGAKSAVD-EGF-D-----VSADLEATLQRAAAED   69 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEE-EECSC----------HHHHHHHHH-TTC-C-----EESCHHHHHHHHHHTT
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHH-cCC-e-----eeCCHHHHHHhcccCC
Confidence            4689999999999999999999999887 45542          344433322 221 0     11123344432   58


Q ss_pred             ceeeccccCCcccccccccc----cceEEEecCCCCCCHHHHHHHHhC--CCeEec
Q 012750          329 DVLIPCALGGVLKRENAADV----KAKFIIEAANHPTDPEADEILSKR--GVTILP  378 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~i----~akiIvEgAN~p~t~~a~~iL~~r--GI~viP  378 (457)
                      |+++-|..... ..+-+..+    .-.+|+..+.  +.+..-+.+.+.  ++.++|
T Consensus        70 DlVilavP~~~-~~~vl~~l~~~~~~~iv~Dv~S--vk~~i~~~~~~~~~~~~~v~  122 (341)
T 3ktd_A           70 ALIVLAVPMTA-IDSLLDAVHTHAPNNGFTDVVS--VKTAVYDAVKARNMQHRYVG  122 (341)
T ss_dssp             CEEEECSCHHH-HHHHHHHHHHHCTTCCEEECCS--CSHHHHHHHHHTTCGGGEEC
T ss_pred             CEEEEeCCHHH-HHHHHHHHHccCCCCEEEEcCC--CChHHHHHHHHhCCCCcEec
Confidence            99998876432 22222222    2246666543  333333333333  466777

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=82.83  E-value=1.8  Score=40.42  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             CCCCCCeEEEEec-Ch--HHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGF-GN--VGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGf-Gn--VG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++|+++.|.|. |.  +|+.+|+.|.++|++|+.+.
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~   40 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTY   40 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEec
Confidence            4688999999996 66  99999999999999998543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=82.68  E-value=1.6  Score=40.40  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +++++++.|.| .|.+|+++++.|.++|++|+.+.
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~   44 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIAD   44 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence            57899999998 59999999999999999998553

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=82.67  E-value=1.6  Score=40.23  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=30.4

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++++++.|.| .|.+|+++++.|.++|++|+.+.
T Consensus         7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~   42 (254)
T 2wsb_A            7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILID   42 (254)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            357899999998 59999999999999999998553

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=82.65  E-value=4  Score=40.51  Aligned_cols=150  Identities=13%  Similarity=0.181  Sum_probs=82.8

Q ss_pred             HHHHHHhhccCCCCcccCCCC----CCCH--HHHHHHHHHhhhh---hCCCCc------eec-CcccCCCCCC-CCCcch
Q 012750          169 VFTQKIHDLIGIHTDIPAPDM----GTNA--QTMAWILDEYSKF---HGHSPA------VVT-GKPIDLGGSL-GREAAT  231 (457)
Q Consensus       169 ~f~~~l~~~iG~~~dipapDv----gT~~--~~m~wi~d~~~~~---~g~~~~------~~t-Gkp~~~GGs~-gr~~aT  231 (457)
                      +|-.++..+.|.-..+...+.    +.++  .|-+.+...|...   +.+..+      -.. +.|+..+|+. +.-+.-
T Consensus        58 SFe~A~~~LGg~~i~l~~~~~~S~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~~~~~vPVINag~G~~~HPtQ  137 (310)
T 3csu_A           58 SFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQ  137 (310)
T ss_dssp             HHHHHHHTTTCEEEEESCC-----CCSHHHHHHHHHHHTTTCSEEEEEESSTTHHHHHHHHCTTCCEEEEEETTSCCHHH
T ss_pred             HHHHHHHHhCCeEEEeCCCccchhhccCCcHHHHHHHHHHhCCEEEEECCChhHHHHHHHhcCCCCEEcCccCCCCCchH
Confidence            678888888776555544443    3322  3444444444221   111111      124 6788887763 333343


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEec---ChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHH-HHHHhHhhc
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGF---GNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIH-KLLAHKDKT  306 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGf---GnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~-~L~~~~~~~  306 (457)
                      +.-=.+++++.   .| +++|++|+++|-   +||....+..+... |++|+ ++       .|.|+.++ .+.+..++.
T Consensus       138 aLaDl~Ti~e~---~g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~-~~-------~P~~~~~~~~~~~~~~~~  205 (310)
T 3csu_A          138 TLLDLFTIQET---QG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFY-FI-------APDALAMPQYILDMLDEK  205 (310)
T ss_dssp             HHHHHHHHHHH---HS-CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEE-EE-------CCGGGCCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHH---hC-CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEE-EE-------CCcccccCHHHHHHHHHc
Confidence            33334444443   34 689999999997   59999999999999 99987 43       35555332 344443333


Q ss_pred             C-CcccCCCCeecCCCcccccccceeecccc
Q 012750          307 G-SLKDFDGGDSMEPSELLAHECDVLIPCAL  336 (457)
Q Consensus       307 g-~~~~~~~~~~i~~~ell~~~~DIliPaA~  336 (457)
                      | .+.-+     -++++.+ .++||++.--.
T Consensus       206 g~~~~~~-----~d~~eav-~~aDvvyt~~~  230 (310)
T 3csu_A          206 GIAWSLH-----SSIEEVM-AEVDILYMTRV  230 (310)
T ss_dssp             TCCEEEC-----SCGGGTT-TTCSEEEECC-
T ss_pred             CCeEEEE-----cCHHHHh-cCCCEEEECCc
Confidence            3 22111     1233444 27888887644

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=82.59  E-value=3.2  Score=35.44  Aligned_cols=102  Identities=18%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             CCeEEEEec----ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750          252 DLTFVIQGF----GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE  327 (457)
Q Consensus       252 g~~vaIqGf----GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~  327 (457)
                      -++|+|+|.    +.+|..+.+.|.+.|++|+.|        ||.+=   ++       ..+.-|+.-..++  + .+ =
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pV--------nP~~~---~i-------~G~~~y~sl~dlp--~-vD-l   61 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPV--------GRKKG---EV-------LGKTIINERPVIE--G-VD-T   61 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEE--------SSSCS---EE-------TTEECBCSCCCCT--T-CC-E
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEE--------CCCCC---cC-------CCeeccCChHHCC--C-CC-E
Confidence            368999996    789999999999999988865        34320   00       0112233211111  1 11 2


Q ss_pred             cceeeccccC-CcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEec
Q 012750          328 CDVLIPCALG-GVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILP  378 (457)
Q Consensus       328 ~DIliPaA~~-~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viP  378 (457)
                      ++|++|+..- ..+.+  +.+.++|.|+ -.-+...+++.++.++.||.++|
T Consensus        62 avi~~p~~~v~~~v~e--~~~~g~k~v~-~~~G~~~~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           62 VTLYINPQNQLSEYNY--ILSLKPKRVI-FNPGTENEELEEILSENGIEPVI  110 (122)
T ss_dssp             EEECSCHHHHGGGHHH--HHHHCCSEEE-ECTTCCCHHHHHHHHHTTCEEEE
T ss_pred             EEEEeCHHHHHHHHHH--HHhcCCCEEE-ECCCCChHHHHHHHHHcCCeEEC
Confidence            3445555322 22222  2222333333 12234678999999999999985

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=82.56  E-value=1.4  Score=39.34  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=27.5

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          253 LTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       253 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      ++|.|.| .|.+|+++++.|.++|++|++++-
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R   32 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVR   32 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEc
Confidence            4799999 599999999999999999997654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=82.51  E-value=1.2  Score=42.22  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=28.9

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +.+++|.|.|. |.+|+++++.|.+.|++|+++..
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   39 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDD   39 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEec
Confidence            56789999997 99999999999999999997643

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=82.47  E-value=1.4  Score=39.59  Aligned_cols=31  Identities=29%  Similarity=0.430  Sum_probs=27.4

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750          253 LTFVIQGF-GNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       253 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      ++|.|.|. |.+|+++++.|.++|.+|++++-
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R   32 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVR   32 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            47999996 99999999999999999997653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=82.37  E-value=1.6  Score=42.36  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=31.7

Q ss_pred             HHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          244 AEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +.+-..|+||.+.|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus        21 ~~Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~-i~~r   61 (273)
T 4fgs_A           21 QSMTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVF-ITGR   61 (273)
T ss_dssp             ----CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             hhhcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            34445699999999985 7799999999999999998 6665

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=82.31  E-value=1.2  Score=42.68  Aligned_cols=35  Identities=11%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+||++.|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv-~~~~   39 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVV-AVEL   39 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEEC
Confidence            689999999984 7899999999999999998 5665

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=82.29  E-value=1.3  Score=40.53  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++++++.|.| .|.+|+++++.|.++|++|+.+.
T Consensus         3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~   38 (248)
T 2pnf_A            3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITG   38 (248)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence            457899999998 59999999999999999998553

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=82.21  E-value=1  Score=43.51  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=27.9

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +.++++|.|.|. |.+|+++++.|.+.|++|+++.-.
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   52 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLR   52 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCC
Confidence            478899999996 999999999999999999977543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=82.12  E-value=1.8  Score=39.69  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=30.5

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++++++.|.|. |.+|+++++.|.++|++|+.+.
T Consensus         3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~   38 (244)
T 3d3w_A            3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVS   38 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            3578999999985 9999999999999999998543

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=82.11  E-value=0.92  Score=45.34  Aligned_cols=33  Identities=36%  Similarity=0.499  Sum_probs=29.3

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~  285 (457)
                      .||+|.|+|.+|+.+++.|.+ .+..|++|.|.+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~   35 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTR   35 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESS
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            479999999999999999987 578999999863

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=81.89  E-value=1.6  Score=41.13  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++|+++.|.|- |.+|+++|+.|.++|++|+ +.|.+
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADII-LFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEE-EEccc
Confidence            478999999984 8999999999999999998 45543

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=81.88  E-value=1.7  Score=41.13  Aligned_cols=36  Identities=22%  Similarity=0.549  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++|+++.|.|- |.+|+++++.|.++|++|+ +.|.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~r   43 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVV-LADL   43 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEcC
Confidence            4688999999985 8999999999999999998 4454

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=81.80  E-value=1.4  Score=41.63  Aligned_cols=35  Identities=14%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEe---cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG---FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG---fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++|++++|.|   .|.+|+.+++.|.+.|++|+. .|.
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~-~~r   41 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVL-TGF   41 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEE-EEC
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEE-Eec
Confidence            47899999999   589999999999999999984 444

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=81.79  E-value=1.7  Score=40.57  Aligned_cols=35  Identities=17%  Similarity=0.527  Sum_probs=30.0

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++|+++.|.|- |.+|+++++.|.+.|++|+.+.
T Consensus         3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~   38 (257)
T 3tpc_A            3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLD   38 (257)
T ss_dssp             -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            3578999999985 8999999999999999998543

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=81.72  E-value=1.9  Score=40.30  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=29.9

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  281 (457)
                      .+++|+++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~   49 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTIC   49 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            3589999999984 999999999999999999854

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=81.71  E-value=3.8  Score=39.94  Aligned_cols=31  Identities=32%  Similarity=0.401  Sum_probs=26.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGG--KVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  284 (457)
                      ++|+|+|.|.||..++..|...|.  .|+ +.|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~-L~D~   33 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELV-LVDR   33 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeC
Confidence            479999999999999999999987  766 5565

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=81.69  E-value=1.9  Score=39.88  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++++++.|.| .|.+|+++++.|.++|++|+.+.
T Consensus         3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~   38 (264)
T 2pd6_A            3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACD   38 (264)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            357899999998 59999999999999999998553

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=81.66  E-value=1.7  Score=41.46  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++|+++.|.| .|.+|+++++.|.+.|++|+.+.
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~   63 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAA   63 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            368999999998 58999999999999999998443

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=81.60  E-value=3  Score=41.16  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=29.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .|.+|+|+|.|.||..+++++...|++|+++.
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~  210 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVIS  210 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence            68899999999999999999998999988665

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=81.58  E-value=1.7  Score=41.81  Aligned_cols=36  Identities=17%  Similarity=0.213  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++|++++|.|.+   .+|+.+|+.|.+.|++|+ +.|.
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~-~~~r   64 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVA-LTYL   64 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEE-EEES
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEE-EEeC
Confidence            35889999999974   899999999999999988 4554

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=81.56  E-value=1.7  Score=40.61  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .++|+++.|.|- |.+|+.+++.|.+.|++|+. .|.
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~-~~r   44 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVIL-LGR   44 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence            488999999985 89999999999999999984 444

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=81.49  E-value=1.7  Score=41.14  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++|+++.|.| .|.+|+++|+.|.+.|++|+. .|.
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~-~~r   42 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAI-CDR   42 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EEC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEE-EeC
Confidence            58899999998 589999999999999999984 444

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=81.47  E-value=1.2  Score=43.17  Aligned_cols=109  Identities=13%  Similarity=0.123  Sum_probs=59.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccC----CCCeecCCCccc--cc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF----DGGDSMEPSELL--AH  326 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~----~~~~~i~~~ell--~~  326 (457)
                      ++|+|+|.|++|+.+|..|.+.|..|+ +.|...        +.+.+.+..+. +.-..+    +.....+++++-  -.
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~-~~~r~~--------~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~   70 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVR-IWGTEF--------DTEILKSISAG-REHPRLGVKLNGVEIFWPEQLEKCLE   70 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEE-EECCGG--------GHHHHHHHHTT-CCBTTTTBCCCSEEEECGGGHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEE-EEEccC--------CHHHHHHHHHh-CcCcccCccccceEEecHHhHHHHHh
Confidence            479999999999999999999999887 445410        12333333322 210111    000111111221  13


Q ss_pred             ccceeeccccCCcccc---ccccccc-ceEEEecCCCC------CCHHHHHHHHhC
Q 012750          327 ECDVLIPCALGGVLKR---ENAADVK-AKFIIEAANHP------TDPEADEILSKR  372 (457)
Q Consensus       327 ~~DIliPaA~~~~It~---~na~~i~-akiIvEgAN~p------~t~~a~~iL~~r  372 (457)
                      +||+++-|.....+.+   +-.+ ++ -++|+.-.|+-      ......+.+.+.
T Consensus        71 ~~D~vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~  125 (335)
T 1txg_A           71 NAEVVLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLK  125 (335)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTS
T ss_pred             cCCEEEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHh
Confidence            7899998875543221   1223 43 35788888874      234445566553

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=81.46  E-value=1.8  Score=40.46  Aligned_cols=36  Identities=22%  Similarity=0.200  Sum_probs=29.9

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++++++.|.| .|.+|+.+++.|.+.|++|+. .|.
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~-~~r   39 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFA-GRR   39 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence            357899999998 588999999999999999984 444

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=81.44  E-value=1.7  Score=40.75  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++|+++.|.| .|.+|+++++.|.++|++|+. .|.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~-~~r   40 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLL-TGR   40 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EeC
Confidence            47899999998 589999999999999999984 444

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=81.40  E-value=2  Score=41.04  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             CCCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEE
Q 012750          248 QAIRDLTFVIQGF---GNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       248 ~~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaV  281 (457)
                      .+++|++++|.|-   |.+|+.+|+.|.+.|++|+.+
T Consensus         4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~   40 (297)
T 1d7o_A            4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVG   40 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEe
Confidence            4588999999996   689999999999999999854

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=81.32  E-value=1.2  Score=44.12  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=28.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      |.+|+|.|.|.||..+++++...|++|+++.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~  211 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMAN  211 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence            8999999999999999999999999998654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=81.27  E-value=1.9  Score=40.62  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++|+++.|.| .|.+|+.+++.|.+.|++|+. .|.
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~-~~r   40 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAF-CAR   40 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence            468899999998 589999999999999999884 454

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=81.27  E-value=1.7  Score=41.76  Aligned_cols=36  Identities=11%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++|+++.|.|- |.+|+++++.|.++|++|+ +.|.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~-~~~r   79 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIA-IAYL   79 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            3589999999984 8999999999999999998 4444

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=81.23  E-value=2.7  Score=41.16  Aligned_cols=32  Identities=9%  Similarity=0.419  Sum_probs=29.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC--CCEEEEEE
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHER--GGKVIAVS  282 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~--GakVVaVs  282 (457)
                      .|.+|+|+|.|.||..+++++...  |++|+++.
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~  203 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGIS  203 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEe
Confidence            889999999999999999999888  99988653

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=81.22  E-value=1.9  Score=40.56  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..++|+++.|.|- |.+|+.+++.|.++|++|+. .|.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~-~~r   43 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVL-AAR   43 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEE-EeC
Confidence            3588999999985 88999999999999999984 444

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=81.12  E-value=1.7  Score=40.02  Aligned_cols=34  Identities=15%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +++++++.|.| .|.+|+++++.|.++|++|+.+.
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~   36 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTA   36 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            47889999998 58999999999999999998554

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=81.07  E-value=1.9  Score=41.15  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++|+++.|.| .|.+|+++++.|.++|++|+. .|.
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~-~~r   37 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAV-LDK   37 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEE-EeC
Confidence            47899999998 589999999999999999984 443

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=81.02  E-value=2.1  Score=40.00  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=29.9

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  281 (457)
                      .+++++++.|.| .|.+|+.+++.|.+.|++|+.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   37 (260)
T 2z1n_A            3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLF   37 (260)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            357899999998 5999999999999999999854

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=80.95  E-value=6.1  Score=37.76  Aligned_cols=32  Identities=25%  Similarity=0.356  Sum_probs=28.1

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          251 RDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       251 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++|.|.| .|-+|+++++.|.+.|++|+++.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~   36 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIAD   36 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            467899998 59999999999999999999653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=80.92  E-value=1.2  Score=43.16  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=28.4

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          252 DLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       252 g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .++|.|+| .|++|+.+++.|.+.|..|+ +.|.+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~-~~~~~   54 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPIS-ILDRE   54 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEE-EECTT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEE-EEECC
Confidence            45899999 99999999999999999887 55653

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=80.89  E-value=2.4  Score=37.83  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=29.0

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      -.|++|.|.| .|.+|..+++++...|++|+++.
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~   70 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTA   70 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEe
Confidence            4689999999 69999999999999999998653

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=80.86  E-value=2.1  Score=39.66  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .+++++++.|.| .|.+|+.+++.|.++|++|+.+.
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~   43 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLD   43 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            357899999998 59999999999999999998553

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=80.80  E-value=1.3  Score=42.78  Aligned_cols=31  Identities=29%  Similarity=0.306  Sum_probs=28.3

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .|+|+|.|.+|..+|..|+++|.+|+ |.|..
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~-v~Er~   36 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTL-MIEKR   36 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEE-EECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEE-EEeCC
Confidence            59999999999999999999999988 88764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=80.74  E-value=3.6  Score=42.72  Aligned_cols=44  Identities=18%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             HHHHHHHhCCC-CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          239 TEALLAEHGQA-IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       239 ~~~~l~~~g~~-l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++.+++.+|.. -.-++|.|.|.|++|..+|+.|. .+.+|. |-+.
T Consensus       221 i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~-~~~~v~-iIE~  265 (461)
T 4g65_A          221 IRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLE-QTYSVK-LIER  265 (461)
T ss_dssp             HHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHT-TTSEEE-EEES
T ss_pred             HHHHHHhhccccccccEEEEEcchHHHHHHHHHhh-hcCceE-EEec
Confidence            35556666654 34579999999999999999985 457766 4444

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=80.69  E-value=3.9  Score=40.67  Aligned_cols=32  Identities=25%  Similarity=0.475  Sum_probs=29.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      .|.+|+|.|.|.||..+++++...|++|+++.
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~  225 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFT  225 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            68899999999999999999999999988654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=80.68  E-value=1.9  Score=41.10  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++++++.|.| .|.+|+++|+.|.+.|++|+. .|.
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~-~~r   59 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVV-ADV   59 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeC
Confidence            468899999998 589999999999999999984 444

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=80.65  E-value=1.7  Score=40.58  Aligned_cols=35  Identities=14%  Similarity=0.373  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~-~~r   36 (255)
T 2q2v_A            1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVL-NGF   36 (255)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEE-ECS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeC
Confidence            367899999985 99999999999999999984 454

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=80.64  E-value=4.5  Score=40.32  Aligned_cols=55  Identities=24%  Similarity=0.160  Sum_probs=41.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC---------eeeCCCCCCHHHHHHhHhh
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG---------AVKNADGIDIHKLLAHKDK  305 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G---------~iynp~GLDi~~L~~~~~~  305 (457)
                      +.|++|.|.|.|..|+.+++.+.+.|.+|+.+ |.+.         ..+..+-.|.+.+.+..++
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~-d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~   75 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVL-DPTKNSPCAQVADIEIVASYDDLKAIQHLAEI   75 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEE-ESSTTCTTTTTCSEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE-eCCCCCchHHhCCceEecCcCCHHHHHHHHHh
Confidence            68999999999999999999999999999966 4321         1233344566666665543

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=80.63  E-value=1.2  Score=44.85  Aligned_cols=36  Identities=22%  Similarity=0.439  Sum_probs=32.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +++++|.|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            688999999999999999999999998666688864

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=80.54  E-value=1.4  Score=41.30  Aligned_cols=35  Identities=20%  Similarity=0.383  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++|+++.|.| .|.+|+++++.|.++|++|+. .|.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~-~~r   38 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVI-TGR   38 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EeC
Confidence            47899999998 489999999999999999884 454

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=80.52  E-value=4.1  Score=40.52  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=28.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  284 (457)
                      -.+++|+|+|.|+||+.++..|...|.  .|+ +.|.
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~-l~D~   42 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIG-IVDI   42 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEE-EEeC
Confidence            456799999999999999999988776  555 5665

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=80.36  E-value=2.2  Score=40.69  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=30.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  281 (457)
                      .+++|++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~   46 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMA   46 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence            3589999999984 899999999999999999854

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=80.18  E-value=2.8  Score=40.49  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=30.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      -.|.+|+|+|.|.||..+++++...|++|+++.
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~  173 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS  173 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence            478999999999999999999999999999775

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=80.16  E-value=1.6  Score=41.19  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          247 GQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       247 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..+++|+++.|.|. |.+|+++++.|.+.|++|+. .|.
T Consensus         5 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~-~~r   42 (267)
T 3t4x_A            5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLI-NGR   42 (267)
T ss_dssp             CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeC
Confidence            45688999999984 89999999999999999984 444

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=80.11  E-value=2.3  Score=39.77  Aligned_cols=33  Identities=15%  Similarity=0.214  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  281 (457)
                      +++|+++.|.| .|.+|+++++.|.++|++|+.+
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~   39 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTC   39 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            57899999998 5899999999999999999854

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=80.09  E-value=2.4  Score=39.85  Aligned_cols=33  Identities=18%  Similarity=0.278  Sum_probs=29.5

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  281 (457)
                      +++|+++.|.| .|.+|+++++.|.++|++|+.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   37 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFG   37 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5999999999999999999854

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=80.03  E-value=1.4  Score=43.27  Aligned_cols=29  Identities=21%  Similarity=0.277  Sum_probs=26.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEE
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIA  280 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVa  280 (457)
                      .++|+|+|.|++|..+|..|.+.|..|+.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~   31 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINV   31 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence            46899999999999999999999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	457
d1bgva1	255	c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clost	1e-71
d1b26a1	234	c.2.1.7 (A:179-412) Glutamate dehydrogenase {Therm	9e-68
d1gtma1	239	c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archa	5e-66
d1v9la2	176	c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyroba	1e-61
d1v9la1	242	c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrob	4e-61
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	9e-61
d1leha1	230	c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu	3e-60
d1b26a2	175	c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermo	9e-59
d1gtma2	178	c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archae	3e-58
d1hwxa2	208	c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (B	3e-52
d1bgva2	194	c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostr	6e-49
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	3e-40
d1c1da2	148	c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rh	9e-35
d1leha2	134	c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus	1e-34
d1b7go1	178	c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosp	0.003

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

 Score =  224 bits (573), Expect = 1e-71
 Identities = 72/253 (28%), Positives = 113/253 (44%), Gaps = 14/253 (5%)

Query: 217 KPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG 276
           K    GGSL R  ATG G VY  EA++      +   T  + GFGNV   AA+ + E G 
Sbjct: 1   KARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGA 60

Query: 277 KVIAVSDITGAVKNADGIDIHKLLAH--------KDKTGSLKDFDGGDSMEPSELLAHEC 328
           K + +S   G + + +GI   + + +        ++K     D  G       +    + 
Sbjct: 61  KAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKV 120

Query: 329 DVLIPCALGGVLKRENAADVKA---KFIIEAANHPTDPEADEILSK-RGVTILPDIYANS 384
           D+++PCA    +  E A  + A   K+ IE AN PT  EA   L +   + + P    N+
Sbjct: 121 DIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNA 180

Query: 385 GGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC--NLRMGAFTLG 442
           GGV VS FE  QN +   W  ++V+++L + M           + +    NL  GA  +G
Sbjct: 181 GGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVG 240

Query: 443 VNRVARATTLRGW 455
             ++A A   +G 
Sbjct: 241 FQKIADAMMAQGI 253

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  214 bits (545), Expect = 9e-68
 Identities = 107/234 (45%), Positives = 152/234 (64%), Gaps = 1/234 (0%)

Query: 222 GGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARL-IHERGGKVIA 280
           GGS GRE ATGRGV       +   G   +  T  +QGFGNVG +AA L   E G KV+A
Sbjct: 1   GGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA 60

Query: 281 VSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVL 340
           VSD  G + N +G D+ +L+ +K + G++  +  G+ +   ELL  + D+L+P AL G +
Sbjct: 61  VSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAI 120

Query: 341 KRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQG 400
              NA  +KAK ++E AN PT PEADEILS+RG+ ++PDI AN+GGVTVSYFEWVQ++Q 
Sbjct: 121 HAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQS 180

Query: 401 FMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRG 454
           F W+ D+V N L + M  AF+++  + + +N ++R  A+ L ++RVA AT  RG
Sbjct: 181 FFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 234

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 239

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  210 bits (534), Expect = 5e-66
 Identities = 100/236 (42%), Positives = 145/236 (61%), Gaps = 2/236 (0%)

Query: 222 GGSLGREAATGRGVVYATEALLAEHG-QAIRDLTFVIQGFGNVGSWAAR-LIHERGGKVI 279
           GGSLGR  AT RG  Y         G   ++  T  IQG+GN G + A+ +  + G KV+
Sbjct: 1   GGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVV 60

Query: 280 AVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGV 339
           AVSD  G + N DG++  ++L  K++ GS+KDF G  ++   ELL  E DVL P A+  V
Sbjct: 61  AVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEV 120

Query: 340 LKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQ 399
           + ++NA ++KAK + E AN P  PEADEIL ++G+  +PD   N+GGVTVSYFEWVQNI 
Sbjct: 121 ITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNIT 180

Query: 400 GFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           G+ W  ++V   L + M +AF+++  + +  N ++R  A+ + V RV +A   RGW
Sbjct: 181 GYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 236

>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

 Score =  195 bits (498), Expect = 1e-61
 Identities = 77/175 (44%), Positives = 102/175 (58%), Gaps = 1/175 (0%)

Query: 48  NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
             L       +    + G      + L  P R + V   +  D G    + G+RVQH + 
Sbjct: 2   GFLEYVLNYVKKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDV 61

Query: 108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
            GP KGG+R+HPEV   +  ALA LMT K ++A +PYGGAKG +   PK+LS  ELE L+
Sbjct: 62  LGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELS 121

Query: 168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDL 221
           R + + I  LIG   DIPAPD+GTNAQ MAW++DEYSK  G++ P V T KP +L
Sbjct: 122 RGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPPEL 176

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

 Score =  197 bits (501), Expect = 4e-61
 Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 7/240 (2%)

Query: 223 GSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282
           G+  RE ATG GV  AT  +  +    I   T  IQG GNVG W A  + + G KVIAVS
Sbjct: 2   GNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS 61

Query: 283 DITGAVKNADGIDIHKLLAHKDKTGS-----LKDFDGGDSME-PSELLAHECDVLIPCAL 336
           DI G     +G+++  +  +K  TG          D  + ++ P  +   + D+ +P A+
Sbjct: 62  DINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAI 121

Query: 337 GGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
             V++ +NA  VKA+ ++E AN PT PEA+ IL +RGV ++PDI AN+GGV +SY EWV+
Sbjct: 122 ENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVE 181

Query: 397 NIQGFMWEEDKVNNELRRYMIRAFHNI-KGMCQTHNCNLRMGAFTLGVNRVARATTLRGW 455
           N+Q ++W+E++    L   M+     + K   +     +R  A    + R+  A  +RGW
Sbjct: 182 NLQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW 241

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  198 bits (503), Expect = 9e-61
 Identities = 87/289 (30%), Positives = 127/289 (43%), Gaps = 61/289 (21%)

Query: 226 GREAATGRGVVYATEALLAEHGQA--------IRDLTFVIQGFGNVGSWAARLIHERGGK 277
           GR +ATGRGV +  E  +                D TF +QGFGNVG  + R +H  G K
Sbjct: 2   GRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAK 61

Query: 278 VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALG 337
            +AV +  G++ N DGID  +L   K + G++  F     +    +L  +CD+LIP A  
Sbjct: 62  CVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAK-IYEGSILEVDCDILIPAASE 120

Query: 338 GVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQN 397
             L + NA  VKAK I E AN PT P+AD+I  +R + ++PD+Y N+GGVTVSYF+ ++N
Sbjct: 121 KQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILKN 180

Query: 398 IQGF--------------------------------------------------MWEEDK 407
           +                                                       E+D 
Sbjct: 181 LNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDI 240

Query: 408 VNNELRRYMIRAFHNIKGMCQTHN--CNLRMGAFTLGVNRVARATTLRG 454
           V++ L   M R+   I      +N   +LR  A+   + +V R     G
Sbjct: 241 VHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAG 289

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

 Score =  194 bits (494), Expect = 3e-60
 Identities = 53/243 (21%), Positives = 85/243 (34%), Gaps = 28/243 (11%)

Query: 216 GKPIDLGGSLGREAATGRGVVYATEALLAEH--GQAIRDLTFVIQGFGNVGSWAARLIHE 273
           G     G S      T  GV    +A   E     ++  L   +QG GNV     + ++ 
Sbjct: 1   GISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNT 60

Query: 274 RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIP 333
            G K++       AV  A                     +G D++ P+ +    CD+  P
Sbjct: 61  EGAKLVVTDVNKAAVSAA------------------VAEEGADAVAPNAIYGVTCDIFAP 102

Query: 334 CALGGVLKRENAADVKAKFIIE-AANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYF 392
           CALG VL       +KAK I   A N   DP   + L + G+   PD   N+GGV     
Sbjct: 103 CALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGVINVAD 162

Query: 393 EWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTL 452
           E       + +   +    +   +  +   I  + +       + A  +   R+A+    
Sbjct: 163 EL------YGYNRTRAMKRVDG-IYDSIEKIFAISKRDGVPSYVAADRMAEERIAKVAKA 215

Query: 453 RGW 455
           R  
Sbjct: 216 RSQ 218

>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 175

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  188 bits (480), Expect = 9e-59
 Identities = 87/175 (49%), Positives = 115/175 (65%), Gaps = 1/175 (0%)

Query: 48  NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
           +        F  AA ++ L+S L   L  P R + VE  +  DDG +  + G+RVQH+ A
Sbjct: 1   SLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVA 60

Query: 108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
           RGP KGGIRYHP+V  DEV ALA  MTWKTAV ++P+GG KGG+   PK+LS +ELERL+
Sbjct: 61  RGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLS 120

Query: 168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDL 221
           R F  +I  +IG + DIPAPD+ TNA  +AW +D YS   GH+   +VTGKP++L
Sbjct: 121 RRFFSEIQVIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVEL 175

>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 178

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  187 bits (477), Expect = 3e-58
 Identities = 79/177 (44%), Positives = 108/177 (61%), Gaps = 3/177 (1%)

Query: 48  NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNA 107
           +      +    AA+ + +  +    L  P R ++V   +  DDGS+  + GFRVQH+ A
Sbjct: 2   DPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWA 61

Query: 108 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLT 167
           RGP KGGIR+HPE     V ALA  MTWKTAV D+PYGG KGGI   PK+LS+ E ERL 
Sbjct: 62  RGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLA 121

Query: 168 RVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH---SPAVVTGKPIDL 221
           R + + I+D+I  + DIPAPD+ TN Q MAW++DEY         +  ++TGKP+ +
Sbjct: 122 RGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSI 178

>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 208

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  172 bits (438), Expect = 3e-52
 Identities = 75/198 (37%), Positives = 106/198 (53%), Gaps = 6/198 (3%)

Query: 32  FSSLLTCFESFRIIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDD 91
           F  +   F+    IV + L    +  +   +       + R +      + +   I +DD
Sbjct: 10  FKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDD 69

Query: 92  GSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGI 151
           GS     G+R QH + R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+
Sbjct: 70  GSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGV 129

Query: 152 GCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH 209
             +PK  ++ +LE++TR FT ++     IG   D+PAP+M T  + M+WI D Y+   GH
Sbjct: 130 KINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYASTIGH 189

Query: 210 S----PAVVTGKPIDLGG 223
                 A VTGKPI  GG
Sbjct: 190 YDINAHACVTGKPISQGG 207

>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

 Score =  163 bits (415), Expect = 6e-49
 Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 2/149 (1%)

Query: 69  KLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNA 128
            LER ++IP R I+       D+G +    G+RVQ + A GP KGG+R+ P V+   +  
Sbjct: 47  LLER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKF 105

Query: 129 LAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPD 188
           L     +K ++  +P GGAKGG    P   S+ E+ R  + F  +++  IG   D+PA D
Sbjct: 106 LGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGD 165

Query: 189 MGTNAQTMAWILDEYSKFHGH-SPAVVTG 216
           +G  A+ + ++  +Y K  G     V+TG
Sbjct: 166 LGVGAREIGYMYGQYRKIVGGFYNGVLTG 194

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score =  141 bits (356), Expect = 3e-40
 Identities = 56/223 (25%), Positives = 86/223 (38%), Gaps = 27/223 (12%)

Query: 230 ATGRGVVYATEALLAEHGQA-IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAV 288
            T  GV  A +A +A  G   +  LT ++QG G VG   A L  E G +++     T  V
Sbjct: 4   TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERV 63

Query: 289 KNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV 348
            +A  +                       +   ++L+  CDV  PCA+GGV+  E A  +
Sbjct: 64  AHAVALGHTA-------------------VALEDVLSTPCDVFAPCAMGGVITTEVARTL 104

Query: 349 KAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDK 407
               +  AAN+   D  A +IL  RG+   PD  AN+GG        +   +   W E  
Sbjct: 105 DCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAI-----HLVGREVLGWSESV 159

Query: 408 VNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARAT 450
           V+      +    + +  +           A TL   R   A+
Sbjct: 160 VHERAVA-IGDTLNQVFEISDNDGVTPDEAARTLAGRRAREAS 201

>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score =  124 bits (313), Expect = 9e-35
 Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 102 VQHDNARGPMKGGIRYHPEVDPDE----VNALAQLMTWKTAVADIPYGGAKGGIGCSP-- 155
                  GP  GG R     +  +       LA  MT K AV+++P GG K  I      
Sbjct: 28  RLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPR 87

Query: 156 KELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVT 215
             +  S   R+ R+  + I  L G       PD+ TN+  M  + D            V 
Sbjct: 88  HSIDPSTWARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLNDTTE--------FVF 137

Query: 216 GKPIDLGGS 224
           G+ ++ GG+
Sbjct: 138 GRSLERGGA 146

>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

 Score =  123 bits (311), Expect = 1e-34
 Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 99  GFRVQHDNARGPMKGGIRYHPEVDPD----EVNALAQLMTWKTAVADIPYGGAKGGIGCS 154
                HD   GP  GG R       +    +   LA+ MT+K A A +  GG K  I   
Sbjct: 27  AVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGD 86

Query: 155 PKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
           P    N ++ R    F Q ++        I A D+GT    M  I  E  
Sbjct: 87  PFADKNEDMFRALGRFIQGLNG-----RYITAEDVGTTVDDMDLIHQETD 131

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 7/114 (6%)

Query: 257 IQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGG 315
           + G+G +G   A  I ++   K++ V+  +   +          +    ++    +  G 
Sbjct: 6   VNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGI 65

Query: 316 DSMEPSELLAHECDVLIPCALGGVLKRENAA---DVKAKFIIEAANHPTDPEAD 366
                 E L    D+++       +  +       ++   I +         AD
Sbjct: 66  PVAGTVEDLIKTSDIVVDTT-PNGVGAQYKPIYLQLQRNAIFQGG--EKAEVAD 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	457
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	100.0
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	100.0
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	100.0
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	100.0
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	100.0
d1b26a2	175	Glutamate dehydrogenase {Thermotoga maritima [TaxI	100.0
d1gtma2	178	Glutamate dehydrogenase {Archaeon Pyrococcus furio	100.0
d1v9la2	176	Glutamate dehydrogenase {Pyrobaculum islandicum [T	100.0
d1hwxa2	208	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	100.0
d1bgva2	194	Glutamate dehydrogenase {Clostridium symbiosum [Ta	100.0
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	100.0
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	100.0
d1c1da2	148	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	100.0
d1leha2	134	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	100.0
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	97.94
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.91
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.77
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.71
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.21
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.19
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.12
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.02
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.96
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.78
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.76
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.73
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.71
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.66
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.63
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.61
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.59
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.57
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.56
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.52
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.23
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.2
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.18
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.18
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.12
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.98
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.9
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.87
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.77
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.74
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.66
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.45
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.25
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.22
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.17
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.12
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.03
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	94.99
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.97
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.73
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.55
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.48
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.19
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.18
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.02
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.92
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.85
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.66
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.57
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.48
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.12
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.12
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.08
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.99
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.9
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	92.67
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.64
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.44
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.33
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.18
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.16
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.15
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.04
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	91.88
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.84
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	91.69
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	91.6
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.6
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.48
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	91.24
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	91.09
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.09
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.95
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.87
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	90.85
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.57
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.45
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.42
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	90.32
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	90.27
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.05
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	89.95
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.92
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	89.82
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	89.64
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.63
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	89.47
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.29
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	89.26
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	89.24
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.24
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.18
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.18
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	89.13
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	89.12
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.97
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	88.96
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.95
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	88.89
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	88.76
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	88.5
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.46
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	88.43
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	88.39
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.38
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	88.28
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	88.04
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	88.0
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	88.0
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.94
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	87.86
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	87.83
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	87.82
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.63
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	87.52
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	87.47
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.45
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	87.36
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	87.31
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	87.16
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	87.14
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.06
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	87.03
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.02
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	86.98
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	86.91
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	86.85
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	86.83
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.82
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	86.67
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	86.67
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	86.59
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	86.58
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.55
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	86.5
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	86.22
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.18
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.09
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	86.08
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	85.8
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	85.79
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	85.78
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	85.62
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	85.54
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	85.46
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.46
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	85.36
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	85.15
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	85.11
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	84.86
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	84.84
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	84.76
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	84.72
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	84.71
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	84.7
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	84.7
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	84.69
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	84.67
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.64
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	84.6
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	84.37
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.34
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	84.3
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	84.22
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	84.1
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	84.0
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	83.99
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	83.98
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	83.98
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	83.8
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.78
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	83.71
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	83.56
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	83.51
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	83.44
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	83.4
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	83.39
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	83.3
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	83.21
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	83.01
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	82.85
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	82.75
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	82.66
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	82.59
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	82.48
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	82.46
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	82.4
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	82.39
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.35
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	82.33
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	81.93
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	81.82
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	81.79
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	81.68
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.62
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	81.55
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	81.39
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	81.3
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	81.1
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	81.0
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	80.87
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	80.82
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.77
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	80.64
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	80.59
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	80.42
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	80.32
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	80.14
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	80.1

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.4e-68  Score=517.66  Aligned_cols=235  Identities=43%  Similarity=0.747  Sum_probs=230.6

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHH
Q 012750          222 GGSLGREAATGRGVVYATEALLAEHGQA-IRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKL  299 (457)
Q Consensus       222 GGs~gr~~aTg~Gv~~~~~~~l~~~g~~-l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L  299 (457)
                      |||.||.+||||||+++++++++.+|.+ ++|+||+||||||||+++|++|.+ .|+|||+|+|++|++|||+|||++++
T Consensus         1 GGs~gR~eATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l   80 (239)
T d1gtma1           1 GGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEV   80 (239)
T ss_dssp             TCCTTTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHH
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHhCCCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHH
Confidence            8999999999999999999999999976 999999999999999999999975 69999999999999999999999999


Q ss_pred             HHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750          300 LAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPD  379 (457)
Q Consensus       300 ~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD  379 (457)
                      ++++.+++++.+||+++.++++++|+.+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DIl~PcA~~~~I~~~~a~~i~ak~I~e~AN~p~t~ea~~~L~~rgI~~iPD  160 (239)
T d1gtma1          81 LKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPD  160 (239)
T ss_dssp             HHHHHHHSSSTTCTTSEEECHHHHHHSCCSEEEECSCSCCBCTTGGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECH
T ss_pred             HHHHHhccccccCCCCeeecccccccccccEEeeccccccccHHHHHhccccEEEecCCCCCCHHHHHHHHHCCCEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          380 IYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       380 ~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                      +++|||||++||+||+||.++.+|++++|.++|+++|.+++.++++.++++++++|+|||++|++||+++|+.|||+
T Consensus       161 ~~aNAGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~Ria~a~~~rG~v  237 (239)
T d1gtma1         161 FLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGWV  237 (239)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             hhhCCcceeEeeeeeccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=100.00  E-value=9.4e-69  Score=523.02  Aligned_cols=239  Identities=29%  Similarity=0.448  Sum_probs=225.7

Q ss_pred             cccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCH
Q 012750          217 KPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDI  296 (457)
Q Consensus       217 kp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi  296 (457)
                      ||.++|||.||.+||||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|++|||+|||+
T Consensus         1 Kp~~~GGs~gR~eATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~   80 (255)
T d1bgva1           1 KARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITT   80 (255)
T ss_dssp             CCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCS
T ss_pred             CCccccCCCCCCccchHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHhh-----cCCcccC---CCCeecCCCcccccccceeeccccCCccccccccccc---ceEEEecCCCCCCHHH
Q 012750          297 HKLLAHKDK-----TGSLKDF---DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVK---AKFIIEAANHPTDPEA  365 (457)
Q Consensus       297 ~~L~~~~~~-----~g~~~~~---~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~---akiIvEgAN~p~t~~a  365 (457)
                      ++++++..+     .+++.+|   .+.+.++++++|+.+||||+|||++++||++|+++++   ||+|+||||+|+||+|
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea  160 (255)
T d1bgva1          81 EEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEA  160 (255)
T ss_dssp             HHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGGGSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH
T ss_pred             HHHHHHHHHHhhhcCcchhhhhhhcCceeechhhcccccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHH
Confidence            999987654     3344443   3567889999999999999999999999999999996   7999999999999999


Q ss_pred             HHH-HHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHH
Q 012750          366 DEI-LSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC--NLRMGAFTLG  442 (457)
Q Consensus       366 ~~i-L~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~--~~r~aA~~~A  442 (457)
                      +++ |++|||+|+||+++|||||++|||||+||+++++|++++|+++|+++|.++++++++.++++++  ++|+|||++|
T Consensus       161 ~~~ll~~~gI~vvPD~laNaGGVivSy~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~~a  240 (255)
T d1bgva1         161 LRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVG  240 (255)
T ss_dssp             HHHHHHCTTCEEECHHHHTTHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred             HHHHHHhcCCEEehHhhhcCCceeeehhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            876 5679999999999999999999999999999999999999999999999999999999999988  8999999999


Q ss_pred             HHHHHHHHHHcCc
Q 012750          443 VNRVARATTLRGW  455 (457)
Q Consensus       443 ~~rv~~a~~~rG~  455 (457)
                      ++||++||+.||+
T Consensus       241 ~~Rva~A~~~rG~  253 (255)
T d1bgva1         241 FQKIADAMMAQGI  253 (255)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999999996

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.1e-67  Score=509.83  Aligned_cols=233  Identities=46%  Similarity=0.784  Sum_probs=229.4

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHH
Q 012750          222 GGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLL  300 (457)
Q Consensus       222 GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~  300 (457)
                      |||.||.+||||||+++++++++++|.+++|+||+||||||||+++|++|. +.|++||+|+|++|++|||+|||+++|.
T Consensus         1 GGs~gR~eATg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~   80 (234)
T d1b26a1           1 GGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELI   80 (234)
T ss_dssp             TCCTTHHHHHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHH
T ss_pred             CCCCCccchhhHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHH
Confidence            899999999999999999999999999999999999999999999999996 5799999999999999999999999999


Q ss_pred             HhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEeccc
Q 012750          301 AHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDI  380 (457)
Q Consensus       301 ~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~  380 (457)
                      +++++++++..|++++.++++++|+.+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DI~~PcA~~~~I~~~~a~~l~~~~I~e~AN~p~t~~a~~~L~~rgI~~~PD~  160 (234)
T d1b26a1          81 RYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDI  160 (234)
T ss_dssp             HHHHHSSCSTTCSSCEEECHHHHHTSCCSEEEECSCTTCBCHHHHTTCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHH
T ss_pred             HHHHhhcceeccccceeeccccccccccceeecchhcccccHHHHHHhhhceEeecCCCCCCHHHHHHHHHCCeEEechH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHcC
Q 012750          381 YANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTLRG  454 (457)
Q Consensus       381 laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~~~rG  454 (457)
                      ++|+|||++||+||+||+++.+|++|+|+++|+++|.++++++++.++++++++|+|||++|++||+++|+.||
T Consensus       161 ~aNaGGVi~s~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ria~a~~~rG  234 (234)
T d1b26a1         161 LANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG  234 (234)
T ss_dssp             HHTTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCCeeeeehhcccccchhcccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=100.00  E-value=8.4e-67  Score=506.08  Aligned_cols=234  Identities=37%  Similarity=0.663  Sum_probs=222.4

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHh
Q 012750          223 GSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH  302 (457)
Q Consensus       223 Gs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~  302 (457)
                      ||++|.+||||||++++++++++++.+|+|+||+||||||||+++|++|++.|+|||+|+|++|++|||+|||+++|.++
T Consensus         2 Gs~~r~~ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~   81 (242)
T d1v9la1           2 GNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKN   81 (242)
T ss_dssp             CCGGGGGHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHT
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhcCC-----cccCCCCeecC-CCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeE
Q 012750          303 KDKTGS-----LKDFDGGDSME-PSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTI  376 (457)
Q Consensus       303 ~~~~g~-----~~~~~~~~~i~-~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~v  376 (457)
                      ++.++.     +..+++++.++ ++++|+.+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DIliPcA~~~~I~~~~a~~i~ak~IvegAN~p~t~~a~~~L~~rgI~~  161 (242)
T d1v9la1          82 KGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVV  161 (242)
T ss_dssp             TTSCHHHHHHHHHHTSCCCCCSSTTGGGGCCCSEEEECSCSSCBCTTTTTTCCCSEEECCSSSCBCHHHHHHHHTTTCEE
T ss_pred             hhcchhhHHHhhhhccCceEeeCcchhccccccEEeecchhccccHHHHHhcccCEEEecCCCCCChhHHHHHHhCCeEE
Confidence            876543     34566777664 578999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHcCc
Q 012750          377 LPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQT-HNCNLRMGAFTLGVNRVARATTLRGW  455 (457)
Q Consensus       377 iPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~A~~rv~~a~~~rG~  455 (457)
                      +||+++|+||||+|||||+||+++++|++++|+++|+++|.+++.++++.+++ +++++|+|||++|++||+++|+.|||
T Consensus       162 ~PD~~aNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~im~~~~~~v~~~~~~~~~~~~r~aA~~~A~~rva~a~~~rG~  241 (242)
T d1v9la1         162 VPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW  241 (242)
T ss_dssp             ECHHHHSTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eCchhhcCcchhhhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999975 58999999999999999999999999


Q ss_pred             c
Q 012750          456 E  456 (457)
Q Consensus       456 ~  456 (457)
                      +
T Consensus       242 v  242 (242)
T d1v9la1         242 I  242 (242)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-66  Score=510.87  Aligned_cols=231  Identities=37%  Similarity=0.594  Sum_probs=218.6

Q ss_pred             CCCCcchHHHHHHHHHHHHHHh------C--CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCH
Q 012750          225 LGREAATGRGVVYATEALLAEH------G--QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDI  296 (457)
Q Consensus       225 ~gr~~aTg~Gv~~~~~~~l~~~------g--~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi  296 (457)
                      .||.+||||||++++++++++.      |  .+|+|+||+||||||||+++|++|.+.|+|||+|+|++|++|||+|||+
T Consensus         1 hGR~eATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~   80 (293)
T d1hwxa1           1 HGRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDP   80 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCH
T ss_pred             CCCchHhHHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccch
Confidence            3789999999999999999742      3  4699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeE
Q 012750          297 HKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTI  376 (457)
Q Consensus       297 ~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~v  376 (457)
                      ++|.+++.+++++.+|++. .++++++|+.+||||+|||++++||.+||++++||+|+||||+|+||+|+++|++|||+|
T Consensus        81 ~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~DIliPaA~~~~I~~~~a~~l~ak~I~EgAN~P~t~eA~~~L~~~gI~v  159 (293)
T d1hwxa1          81 KELEDFKLQHGTILGFPKA-KIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMV  159 (293)
T ss_dssp             HHHHHHHHTTSSSTTCTTS-CBCCSCGGGCCCSEEEECSSSSCBCTTTGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHcCCeeccccc-ccCCcccccCCccEEeeccccccccHHHHHHHhhCEEeccCCCCCCcchHHHHHHCCCEE
Confidence            9999999999999988764 578899999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccccCCceehhHHHhhhcccCCCCHHH-------------------------------------------------
Q 012750          377 LPDIYANSGGVTVSYFEWVQNIQGFMWEEDK-------------------------------------------------  407 (457)
Q Consensus       377 iPD~laNaGGVi~S~~E~~qn~~~~~w~~e~-------------------------------------------------  407 (457)
                      +||+++|||||++|||||+||+++++|++++                                                 
T Consensus       160 iPD~laNAGGV~vSy~Ew~qn~~~~~w~~~~~~~e~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~ga~E~d  239 (293)
T d1hwxa1         160 IPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKD  239 (293)
T ss_dssp             ECHHHHTTHHHHHHHHHHHHHHHTSCTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCCCCCCHHHHHHTTCCCHHH
T ss_pred             eChhhhcCchHHhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCchHHHHHHhcCCChHH
Confidence            9999999999999999999999999997532                                                 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750          408 -VNNELRRYMIRAFHNIKGMCQTHN--CNLRMGAFTLGVNRVARATTLRGWE  456 (457)
Q Consensus       408 -v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~A~~rv~~a~~~rG~~  456 (457)
                       |+++|+++|.++|++|++.+++++  ++||+|||++|++||+++++.||+.
T Consensus       240 ~V~~~L~~~M~~a~~~v~~~~~~~~~~~~lR~AAy~~ai~ri~~a~~~rGi~  291 (293)
T d1hwxa1         240 IVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVT  291 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCc
Confidence             889999999999999999999876  7999999999999999999999974

>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9e-65  Score=465.24  Aligned_cols=174  Identities=50%  Similarity=0.853  Sum_probs=170.9

Q ss_pred             CHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHHH
Q 012750           48 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVN  127 (457)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev~  127 (457)
                      ++|++++.||++|+++++++++++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||+++++||+
T Consensus         1 s~~~~~~~~~~~A~~~l~l~~~~~~~L~~P~r~i~v~iPv~~DdG~~~~f~gyR~qhn~~~GP~kGGiR~~~~v~~~ev~   80 (175)
T d1b26a2           1 SLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVK   80 (175)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCHHHHHHHHSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTTSSEEEEEEECSSCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCeEEEEEEEEEECCCcEEEEEeEEEEeecccccccCCeeEcccccHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhh
Q 012750          128 ALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFH  207 (457)
Q Consensus       128 ~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~  207 (457)
                      +||+|||||||+++||||||||||.+||+++|+.|+|+++|+|+++|.+++||+.|||||||||++++|+||+|+|+++.
T Consensus        81 aLa~~MT~K~A~~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~l~~~iG~~~dipApDvgT~~~~M~wi~dey~~~~  160 (175)
T d1b26a2          81 ALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQVIIGPYNDIPAPDVNTNADVIAWYMDTYSMNV  160 (175)
T ss_dssp             HHHHHHHHHHHHHTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHGGGTCBTTTEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCccccccceeecCCCCCCHHHHHHHHHHHHHHHHhccCCCcccccCcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CceecCcccCC
Q 012750          208 GHS-PAVVTGKPIDL  221 (457)
Q Consensus       208 g~~-~~~~tGkp~~~  221 (457)
                      |+. ||++||||+++
T Consensus       161 g~~~~g~vTGKp~~l  175 (175)
T d1b26a2         161 GHTVLGIVTGKPVEL  175 (175)
T ss_dssp             TSCCCCSCSSCCGGG
T ss_pred             CCcCceeEecCccCC
Confidence            984 99999999863

>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7.3e-64  Score=460.73  Aligned_cols=175  Identities=45%  Similarity=0.754  Sum_probs=170.3

Q ss_pred             CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHH
Q 012750           47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEV  126 (457)
Q Consensus        47 ~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev  126 (457)
                      .|+||++++||++|+++++++++++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++||
T Consensus         1 ~np~e~~~~~l~~A~~~~~i~~~~~e~L~~P~r~i~v~iPv~~DdG~~~~f~gyRvqhn~~~GP~kGGiR~~~~v~~~ev   80 (178)
T d1gtma2           1 ADPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTV   80 (178)
T ss_dssp             CTHHHHHHHHHHHHGGGSCCCHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTTSSEECCEEECTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCEEEEEEEEEEECCCCEEEEeeeEEEECCccCCCCCCeEECccCCHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q 012750          127 NALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF  206 (457)
Q Consensus       127 ~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~  206 (457)
                      ++||+|||||||+++||||||||||.+||+++|++|+||++|+|+++|.+++||++|||||||||++++|+||+|+|+++
T Consensus        81 ~aLa~~MT~K~Al~~lp~GG~Kggi~~dP~~~s~~eler~~r~f~~~l~~~iG~~~dipApDvgt~~~~M~wi~dey~~~  160 (178)
T d1gtma2          81 KALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETI  160 (178)
T ss_dssp             HHHHHHHHHHHHHTTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCCCceeEecCCCCCCHHHHHHHHHHHHHHHHhccCCCceeccccCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC---CceecCcccCC
Q 012750          207 HGHS---PAVVTGKPIDL  221 (457)
Q Consensus       207 ~g~~---~~~~tGkp~~~  221 (457)
                      .+.+   +|++||||+++
T Consensus       161 ~~~~~~~~gvvTGKp~~l  178 (178)
T d1gtma2         161 SRRKTPAFGIITGKPLSI  178 (178)
T ss_dssp             HTTSSCGGGGCSSCCGGG
T ss_pred             cCcccCCceEEeCCCcCC
Confidence            8874   47999999853

>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=100.00  E-value=2.5e-63  Score=456.87  Aligned_cols=175  Identities=44%  Similarity=0.717  Sum_probs=171.8

Q ss_pred             CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHH
Q 012750           47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEV  126 (457)
Q Consensus        47 ~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev  126 (457)
                      ++||++++++|++|+++++++++++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||+++++||
T Consensus         1 t~fle~~~~~~~~A~~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~f~gyRvqHn~~lGPakGGiR~~~~v~~~ev   80 (176)
T d1v9la2           1 TGFLEYVLNYVKKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADD   80 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCSEEEEEEEEEECSSSCEEEEEEEEEEEECSSSSEEEEEECCTTCCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCEEEEEEEEEEeCCCeEEEEeeEEEEEchhhhcccCceeECCCCCHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q 012750          127 NALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF  206 (457)
Q Consensus       127 ~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~  206 (457)
                      ++||++||||||+++||||||||||.+||+++|+.|+||++|+|+++|.+++||+.|||||||||++++|+||+|+|+++
T Consensus        81 ~aLA~~MT~K~Al~~lp~GGgKggI~~dp~~~s~~E~er~~r~f~~~l~~~iG~~~dipApDvGt~~~~M~wi~dey~~~  160 (176)
T d1v9la2          81 VALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKI  160 (176)
T ss_dssp             HHHHHHHHHHHHHTTCSCCEEEEEECSCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccCccceeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCccccCccCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC-CCceecCcccCC
Q 012750          207 HGH-SPAVVTGKPIDL  221 (457)
Q Consensus       207 ~g~-~~~~~tGkp~~~  221 (457)
                      .|+ .|+++||||+++
T Consensus       161 ~g~~~~g~vTGKP~~l  176 (176)
T d1v9la2         161 KGYNVPGVFTSKPPEL  176 (176)
T ss_dssp             HTSCCGGGSCSCCSSS
T ss_pred             cCCCCCceeeCCCCCC
Confidence            998 499999999864

>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-61  Score=451.70  Aligned_cols=180  Identities=41%  Similarity=0.667  Sum_probs=172.0

Q ss_pred             hcCCHHHHHHHHHHHHHHHc------------------CCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeec
Q 012750           45 IVMNALAATSRNFRNAARIL------------------GLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN  106 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~------------------~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~  106 (457)
                      ...+|+++++.+|++|+.++                  +++++++++|++|+|+++|+|||+||||++++|+|||||||+
T Consensus         5 ~~p~F~~~v~~~f~~a~~~~e~~l~e~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~v~~pv~~d~G~~~~~~gyR~qHn~   84 (208)
T d1hwxa2           5 DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSH   84 (208)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSHHHHHHHHHHHHHSSCSEEEEEEEEEECSSSCEEEEEEEEEECCC
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHhcCCCeEEEEEEEEEECCCCEEEeccEEEEECC
Confidence            56789999999999999876                  466789999999999999999999999999999999999999


Q ss_pred             cCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHh--hccCCCCcc
Q 012750          107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIH--DLIGIHTDI  184 (457)
Q Consensus       107 a~GPakGGiR~~~~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~--~~iG~~~di  184 (457)
                      ++||+||||||||+++++||++||+||||||||++||||||||||.+||+++|+.|+||++|+|+++|.  .++||+.||
T Consensus        85 ~lGP~kGGiR~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~igp~~dI  164 (208)
T d1hwxa2          85 QRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDV  164 (208)
T ss_dssp             SSSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCGGGSCHHHHHHHHHHHHHHHHHTTCCBTTTEE
T ss_pred             chhccCCCceEChhhhHHHHHHHHHHHHHHHHhhcccccCccceeecCCCCCCHHHHHHHHHHHHHHhhccccccCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999995  489999999


Q ss_pred             cCCCCCCCHHHHHHHHHHhhhhhCC----CCceecCcccCCCCC
Q 012750          185 PAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGS  224 (457)
Q Consensus       185 papDvgT~~~~m~wi~d~~~~~~g~----~~~~~tGkp~~~GGs  224 (457)
                      |||||||++++|+||+|+|+++.|.    .|+++||||+.+||+
T Consensus       165 pApDvgT~~~eM~wi~d~y~~~~g~~~~~~~g~vTGKp~~~GGi  208 (208)
T d1hwxa2         165 PAPNMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGI  208 (208)
T ss_dssp             EECBTTBCHHHHHHHHHHHHTTGGGGCTTGGGGCSSCCGGGTCC
T ss_pred             cCccccccHHHHHHHHhhhhhhcCCCCCCCceeEeCCchhhcCC
Confidence            9999999999999999999998876    379999999999995

>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=100.00  E-value=3.5e-58  Score=427.58  Aligned_cols=172  Identities=28%  Similarity=0.510  Sum_probs=166.0

Q ss_pred             hcCCHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeec
Q 012750           45 IVMNALAATSRNFRNAARILGLDSK-----LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP  119 (457)
Q Consensus        45 ~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~  119 (457)
                      ...+|+|++...++.+..+++.+|+     ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||
T Consensus        17 ~EpeF~QaV~Ev~~sl~~~i~~~p~y~~~~i~e~l~~P~r~i~~~~p~~~d~G~~~~~~gyRvqhn~~lGP~kGGiR~~~   96 (194)
T d1bgva2          17 DEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAP   96 (194)
T ss_dssp             TCHHHHHHHHHHHHTTHHHHHTCHHHHHTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHcCCCeEEEEEEEEEecCCcEEEEeeEEEEecCCcCCcCCCeeecC
Confidence            4567889999999999999999997     78899999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHH
Q 012750          120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI  199 (457)
Q Consensus       120 ~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi  199 (457)
                      ++|.+||++||++||||||+++||||||||||.+||+.+|+.|++|++|+|+++|.+++||+.|||||||||++++|+||
T Consensus        97 ~v~~~ev~~La~~MT~K~Al~~lp~GGgKggi~~dP~~~s~~el~r~~r~~~~~l~~~ig~~~DIpApDvgt~~~eM~wi  176 (194)
T d1bgva2          97 SVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYM  176 (194)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTSSSCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhhhhcCCCcccccceeccCCCCCCHHHHHHHHHHHHHHhccccCCCccccCCcCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhCC-CCceecC
Q 012750          200 LDEYSKFHGH-SPAVVTG  216 (457)
Q Consensus       200 ~d~~~~~~g~-~~~~~tG  216 (457)
                      +|+|+++.|. .||++||
T Consensus       177 ~d~y~~~~g~~~~gvvTG  194 (194)
T d1bgva2         177 YGQYRKIVGGFYNGVLTG  194 (194)
T ss_dssp             HHHHHHHHTSCCGGGSSS
T ss_pred             HHHHHHhcCCCCCeeecC
Confidence            9999999986 5899997

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=100.00  E-value=6.1e-56  Score=426.11  Aligned_cols=216  Identities=24%  Similarity=0.409  Sum_probs=197.2

Q ss_pred             CcccCCCCCCCCCcchHHHHHHHHHHHHHHh-C-CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCC
Q 012750          216 GKPIDLGGSLGREAATGRGVVYATEALLAEH-G-QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADG  293 (457)
Q Consensus       216 Gkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~-g-~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~G  293 (457)
                      |||.++|||.+|+++|||||++++++++++. | .+|+|+||+||||||||+++|++|.+.|+|||++ |          
T Consensus         1 Gkp~~~GGs~~~~~aTg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~-d----------   69 (230)
T d1leha1           1 GISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVT-D----------   69 (230)
T ss_dssp             SCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE-C----------
T ss_pred             CCChhhCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEee-c----------
Confidence            8999999999999999999999999999964 5 4599999999999999999999999999999954 3          


Q ss_pred             CCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCC-CCHHHHHHHHhC
Q 012750          294 IDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKR  372 (457)
Q Consensus       294 LDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p-~t~~a~~iL~~r  372 (457)
                      +|...+.++...       ++.+.++++++|+.+||||+|||++++||++|+++++||+|+||||+| +||+++++|++|
T Consensus        70 ~~~~~~~~~~~~-------~g~~~~~~~~~~~~~cDIl~PcA~~~~I~~~~~~~l~ak~Ive~ANn~~t~~ea~~~L~~r  142 (230)
T d1leha1          70 VNKAAVSAAVAE-------EGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHEL  142 (230)
T ss_dssp             SCHHHHHHHHHH-------HCCEECCGGGTTTCCCSEEEECSCSCCBSTTHHHHCCCSEECCSCSCCBSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHh-------cCCcccCCcccccccccEecccccccccChHHhhccCccEEEecccCCCCCchHHHHHHhh
Confidence            245555555443       356678899999999999999999999999999999999999999887 569999999999


Q ss_pred             CCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 012750          373 GVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARATTL  452 (457)
Q Consensus       373 GI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~~~  452 (457)
                      ||+|+|||++||||||+||+||.+      |+++++.++++. |.+++.+|++.++++++++|+||+++|++||+++|+.
T Consensus       143 GI~~iPD~laNAGGVi~s~~E~~~------~~~~~~~~~l~~-I~~~~~~vl~~a~~~~~~~~~aA~~~A~~ri~~a~~~  215 (230)
T d1leha1         143 GIVYAPDYVINAGGVINVADELYG------YNRTRAMKRVDG-IYDSIEKIFAISKRDGVPSYVAADRMAEERIAKVAKA  215 (230)
T ss_dssp             TCEECCHHHHTTHHHHHHHHGGGC------CCHHHHHHHHTH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEeehhhcccchhhhhhhhhC------CCHHHHHHHHHH-HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999954      899999999986 7799999999999999999999999999999999999


Q ss_pred             cCcc
Q 012750          453 RGWE  456 (457)
Q Consensus       453 rG~~  456 (457)
                      ||+.
T Consensus       216 rg~~  219 (230)
T d1leha1         216 RSQF  219 (230)
T ss_dssp             TCSC
T ss_pred             cCCc
Confidence            9975

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=100.00  E-value=3e-48  Score=365.83  Aligned_cols=196  Identities=29%  Similarity=0.434  Sum_probs=176.9

Q ss_pred             cchHHHHHHHHHHHHHHhCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750          229 AATGRGVVYATEALLAEHGQ-AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG  307 (457)
Q Consensus       229 ~aTg~Gv~~~~~~~l~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g  307 (457)
                      .+||+||++++++++++.|. +|+|+||+||||||||+++|++|++.|+||+ ++|.          |.+.+.....   
T Consensus         3 ~~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvv-v~d~----------d~~~~~~~~~---   68 (201)
T d1c1da1           3 FTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLL-VADT----------DTERVAHAVA---   68 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS----------CHHHHHHHHH---
T ss_pred             CchHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-Eecc----------hHHHHHHHHh---
Confidence            46999999999999999997 5999999999999999999999999999999 6765          3445443322   


Q ss_pred             CcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHH-HHHHHHhCCCeEecccccccCC
Q 012750          308 SLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPE-ADEILSKRGVTILPDIYANSGG  386 (457)
Q Consensus       308 ~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~-a~~iL~~rGI~viPD~laNaGG  386 (457)
                           .+.+.++++++|..+||||+|||++++||++|+++++||+|+||||+|+|++ ++++|++|||+|+||+++||||
T Consensus        69 -----~g~~~~~~~~~~~~~~DI~iPcA~~~~I~~~~a~~i~ak~i~e~AN~p~~~~~~~~~L~~rgI~~iPD~laNAGG  143 (201)
T d1c1da1          69 -----LGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG  143 (201)
T ss_dssp             -----TTCEECCGGGGGGCCCSEEEECSCSCCBCHHHHHHCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCHHHHTTHH
T ss_pred             -----hcccccCccccccccceeeecccccccccHHHHhhhhhheeeccCCCCcchhhHHHHhcccceEEEehhhhccch
Confidence                 1456788899999999999999999999999999999999999999998755 7889999999999999999999


Q ss_pred             ceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 012750          387 VTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARA  449 (457)
Q Consensus       387 Vi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a  449 (457)
                      |+.++.||     .+.|+++++++++++ |.+++.++++.+++++++||.+||++|++||++|
T Consensus       144 Vi~~~~~~-----~~~~~~~~v~~~l~~-i~~~~~~i~~~a~~~~~~~~~aA~~~A~~ri~~A  200 (201)
T d1c1da1         144 AIHLVGRE-----VLGWSESVVHERAVA-IGDTLNQVFEISDNDGVTPDEAARTLAGRRAREA  200 (201)
T ss_dssp             HHHHHHHH-----TTCCCHHHHHHHHHT-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH-----HcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhh
Confidence            99887776     457999999999986 7889999999999999999999999999999886

>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=100.00  E-value=1.7e-38  Score=284.71  Aligned_cols=120  Identities=28%  Similarity=0.380  Sum_probs=111.8

Q ss_pred             EEEEEEEeeccCCCCCCCeeeecCCCH----HHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCC--CCCHHHHHHHHHHH
Q 012750           97 YVGFRVQHDNARGPMKGGIRYHPEVDP----DEVNALAQLMTWKTAVADIPYGGAKGGIGCSPK--ELSNSELERLTRVF  170 (457)
Q Consensus        97 f~G~rv~h~~a~GPakGGiR~~~~~~~----~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~--~~s~~ele~~~r~f  170 (457)
                      .+++.++||+++||++|||||||++|.    +||++||++|||||||++||||||||||.+||+  +.++.|+++++|+|
T Consensus        23 l~~iiaIH~t~lGPa~GG~R~~~y~s~~~al~dvl~LA~~MT~K~Alaglp~GGgKg~I~~dp~~~~~~~~e~~~l~r~~  102 (148)
T d1c1da2          23 AHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTWARILRIH  102 (148)
T ss_dssp             EEEEEEEEECSSSSEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEEECSSCGGGCCHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCCCcceEEEecCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCcceEEecCCCcCCCCHHHHHHHHHHH
Confidence            479999999999999999999999994    569999999999999999999999999999996  45688999999999


Q ss_pred             HHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCC
Q 012750          171 TQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG  226 (457)
Q Consensus       171 ~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~g  226 (457)
                      .+++..+.|+  |||||||||++++|+||+++|+        ++||||.++|||..
T Consensus       103 ~~~l~~l~G~--yi~a~DvGt~~~dm~~i~~~t~--------~vtGk~~~~GGsGn  148 (148)
T d1c1da2         103 AENIDKLSGN--YWTGPDVNTNSADMDTLNDTTE--------FVFGRSLERGGAGS  148 (148)
T ss_dssp             HHHHHHTTTS--EEEEECTTCCHHHHHHHHHHCS--------CBCCCCGGGTSCCC
T ss_pred             HHHHHHhCCc--EeecCCCCCCHHHHHHHHhhCC--------eeEecCcccCCCCC
Confidence            9999999996  5999999999999999999987        68999999999863

>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=100.00  E-value=1e-33  Score=249.59  Aligned_cols=118  Identities=27%  Similarity=0.276  Sum_probs=100.2

Q ss_pred             CCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHH----HHHHHHHHHHHHHhhcCCCCCCcceEE
Q 012750           76 IPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPD----EVNALAQLMTWKTAVADIPYGGAKGGI  151 (457)
Q Consensus        76 ~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~----ev~~LA~~Mt~K~Al~~lP~GGaKGgI  151 (457)
                      .+++++.++-|.       .-++||+++||+++||++||||||||+|.+    |+++||++||||||++++|||||||||
T Consensus        11 ~~e~v~~~~d~~-------tgl~a~iaihnt~~GPa~GG~R~~~y~s~~~al~dvlrLA~~MT~K~ala~lp~GGgK~vI   83 (134)
T d1leha2          11 DYEQLVFCQDEA-------SGLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVI   83 (134)
T ss_dssp             TCCEEEEEEETT-------TTEEEEEEEEECSSSSEECCEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEE
T ss_pred             CCcEEEEEecCC-------CCcEEEEEEeCCCCCCCcccEEEeccCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCcceee
Confidence            467777776333       247999999999999999999999999854    699999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhh
Q 012750          152 GCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSK  205 (457)
Q Consensus       152 ~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~  205 (457)
                      .+||+..+..|+   +|+|.+.+.++.|.  ||||||+||+++||+||++++++
T Consensus        84 ~~dp~~~~~~el---~r~~~~~v~~L~g~--yi~a~DvGt~~~dm~~i~~~t~~  132 (134)
T d1leha2          84 IGDPFADKNEDM---FRALGRFIQGLNGR--YITAEDVGTTVDDMDLIHQETDY  132 (134)
T ss_dssp             ESCTTTTCCHHH---HHHHHHHHHTTTTS--EEBCBCTTCCHHHHHHHHTTCSC
T ss_pred             ecCCCCCCHHHH---HHHHHHHHHhCCCc--EEccCCCCCCHHHHHHHHHhCCc
Confidence            999998887764   45555555555564  59999999999999999998764

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.94  E-value=2.9e-06  Score=75.27  Aligned_cols=49  Identities=12%  Similarity=0.064  Sum_probs=42.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCC----CEEEEEECCCCeeeCCCCCCHHHHH
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERG----GKVIAVSDITGAVKNADGIDIHKLL  300 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~iynp~GLDi~~L~  300 (457)
                      -.+|+|.|||+||+.++++|.++.    .+|++|+|+++.+++++|+|.+...
T Consensus         4 ~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~   56 (168)
T d1ebfa1           4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGS   56 (168)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTT
T ss_pred             EEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhh
Confidence            357899999999999999998653    4999999999999999999865443

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.3e-05  Score=69.39  Aligned_cols=101  Identities=19%  Similarity=0.311  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      ||...+.   .+++..+..+.||+|.|.|||.||+.+|+.|...|++|+ |+|.+.         +.+|..+.+      
T Consensus         6 ~g~S~~~---~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~-v~e~dp---------~~al~A~~d------   66 (163)
T d1li4a1           6 CRESLID---GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVI-ITEIDP---------INALQAAME------   66 (163)
T ss_dssp             HHHHHHH---HHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSCH---------HHHHHHHHT------
T ss_pred             chhhHHH---HHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeE-eeeccc---------chhHHhhcC------
Confidence            4555443   344567888999999999999999999999999999998 777631         334433321      


Q ss_pred             cCCCCeecCCCcccccccceeeccccC-CcccccccccccceEEE
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAKFII  354 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~akiIv  354 (457)
                         +.+..+-++.+ ..+|++|-|+-. ++|+.+..+++|=..|+
T Consensus        67 ---G~~v~~~~~a~-~~adivvtaTGn~~vI~~eh~~~MKdgaIL  107 (163)
T d1li4a1          67 ---GYEVTTMDEAC-QEGNIFVTTTGCIDIILGRHFEQMKDDAIV  107 (163)
T ss_dssp             ---TCEECCHHHHT-TTCSEEEECSSCSCSBCHHHHTTCCTTEEE
T ss_pred             ---ceEeeehhhhh-hhccEEEecCCCccchhHHHHHhccCCeEE
Confidence               22222223333 367988877664 68999999998776655

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.77  E-value=3.6e-05  Score=68.05  Aligned_cols=101  Identities=23%  Similarity=0.375  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK  310 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~  310 (457)
                      ||..++.+   +++..+.-+.|++++|.|||.||+.+|+.|...|++|+ |++.+.         +.+|..+.      .
T Consensus         5 ~g~S~~d~---i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~-V~E~DP---------i~alqA~m------d   65 (163)
T d1v8ba1           5 CRHSLPDG---LMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVY-ITEIDP---------ICAIQAVM------E   65 (163)
T ss_dssp             HHHHHHHH---HHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEE-EECSCH---------HHHHHHHT------T
T ss_pred             cchhHHHH---HHHHhCceecCCEEEEecccccchhHHHHHHhCCCEEE-EEecCc---------hhhHHHHh------c
Confidence            45555433   44566888999999999999999999999999999998 888742         34443322      2


Q ss_pred             cCCCCeecCCCcccccccceeeccccC-CcccccccccccceEEE
Q 012750          311 DFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAKFII  354 (457)
Q Consensus       311 ~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~akiIv  354 (457)
                      +|   +..+-++.+ ..+||||-|+.. ++|+.+..+++|=..|+
T Consensus        66 Gf---~v~~~~~a~-~~aDi~vTaTGn~~vI~~~h~~~MKdgaIl  106 (163)
T d1v8ba1          66 GF---NVVTLDEIV-DKGDFFITCTGNVDVIKLEHLLKMKNNAVV  106 (163)
T ss_dssp             TC---EECCHHHHT-TTCSEEEECCSSSSSBCHHHHTTCCTTCEE
T ss_pred             CC---ccCchhHcc-ccCcEEEEcCCCCccccHHHHHHhhCCeEE
Confidence            22   333333443 378999999865 68999999998766555

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=0.00065  Score=59.24  Aligned_cols=128  Identities=14%  Similarity=0.132  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc
Q 012750          232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD  311 (457)
Q Consensus       232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~  311 (457)
                      |.|.+.+    |++.|.+++|++|.|.|.|-+++.++..|.+.|.+|. |.+++          .+...+..+....   
T Consensus         2 g~Gf~~~----l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~-I~nRt----------~~ka~~l~~~~~~---   63 (170)
T d1nyta1           2 GVGLLSD----LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVT-ITNRT----------VSRAEELAKLFAH---   63 (170)
T ss_dssp             HHHHHHH----HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHHTGG---
T ss_pred             HhHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEE-eccch----------HHHHHHHHHHHhh---
Confidence            4455444    4556899999999999999999999999999999954 77663          3444433332111   


Q ss_pred             CCCCeecCCCcccccccceeeccccCCcccccc---cccc-cceEEEecCCCCC-CHHHHHHHHhCCCe-Eec
Q 012750          312 FDGGDSMEPSELLAHECDVLIPCALGGVLKREN---AADV-KAKFIIEAANHPT-DPEADEILSKRGVT-ILP  378 (457)
Q Consensus       312 ~~~~~~i~~~ell~~~~DIliPaA~~~~It~~n---a~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~-viP  378 (457)
                      ....+.++.++....++|++|-|+.-+.....+   ...+ +..+|.+-.-.|. |+- -+..+++|.. ++.
T Consensus        64 ~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T~l-l~~A~~~G~~~~i~  135 (170)
T d1nyta1          64 TGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPF-LAWCEQRGSKRNAD  135 (170)
T ss_dssp             GSSEEECCSGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCHH-HHHHHHTTCCEEEC
T ss_pred             cccccccccccccccccceeecccccCcccCCCCCcHHHhccCcEEEEeecCCCCCHH-HHHHHHcCCCcccC
Confidence            111222333444456899999998655433221   1223 4578899998884 654 4566777864 443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.21  E-value=0.00018  Score=63.16  Aligned_cols=113  Identities=13%  Similarity=0.122  Sum_probs=69.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--ccccc
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--AHECD  329 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--~~~~D  329 (457)
                      .++|.++|+|++|..+|+.|.++|++|+ +.|.+          .+++.++.++........++.  +.+++.  ..++|
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~~~~~~a~--~~~~~~~~~~~~~   68 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVC-AFNRT----------VSKVDDFLANEAKGTKVLGAH--SLEEMVSKLKKPR   68 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------THHHHHHHHTTTTTSSCEECS--SHHHHHHHBCSSC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHhccccccccchh--hhhhhhhhhcccc
Confidence            3679999999999999999999999997 55653          345555444322111111111  112222  34778


Q ss_pred             eeeccccCCcccccccc----cc-cceEEEecCCCC--CCHHHHHHHHhCCCeEe
Q 012750          330 VLIPCALGGVLKRENAA----DV-KAKFIIEAANHP--TDPEADEILSKRGVTIL  377 (457)
Q Consensus       330 IliPaA~~~~It~~na~----~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~vi  377 (457)
                      +++.|........+-..    .+ +-++|++-.+..  .+.+..+.+.++|+.|+
T Consensus        69 ~ii~~~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~l  123 (176)
T d2pgda2          69 RIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (176)
T ss_dssp             EEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             eEEEecCchHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCcee
Confidence            88877554322221111    12 236888877754  34666788999999987

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.19  E-value=0.00037  Score=60.20  Aligned_cols=108  Identities=19%  Similarity=0.295  Sum_probs=69.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      ++|.|+|+|++|+.+|+.|.++|++|+ +.|.+          .+.+.+..+......       -++.++ ..+||+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~-~~d~~----------~~~~~~~~~~~~~~~-------~~~~e~-~~~~d~ii   61 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VSDRN----------PEAIADVIAAGAETA-------STAKAI-AEQCDVII   61 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHTTCEEC-------SSHHHH-HHHCSEEE
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEE-EEeCC----------cchhHHHHHhhhhhc-------ccHHHH-HhCCCeEE
Confidence            479999999999999999999999987 66653          455555544322111       122333 34899998


Q ss_pred             ccccCC-----cccccc--cccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecc
Q 012750          333 PCALGG-----VLKREN--AADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPD  379 (457)
Q Consensus       333 PaA~~~-----~It~~n--a~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD  379 (457)
                      -|-...     ++..++  ...+ +-++|++..+..  .+.+..+.+.++|+.++.-
T Consensus        62 ~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda  118 (161)
T d1vpda2          62 TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA  118 (161)
T ss_dssp             ECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC
T ss_pred             EEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecc
Confidence            885322     221111  1112 347888887754  3455667899999988754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.12  E-value=0.00028  Score=63.80  Aligned_cols=113  Identities=22%  Similarity=0.315  Sum_probs=72.2

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      |.++.|++|.|+|||++|+.+|++|...|++|++ .|.       .. +...-     ..    .+   ...+-++++. 
T Consensus        38 g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~-~d~-------~~-~~~~~-----~~----~~---~~~~l~~~l~-   95 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT-YDI-------FR-NPELE-----KK----GY---YVDSLDDLYK-   95 (197)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE-ECS-------SC-CHHHH-----HT----TC---BCSCHHHHHH-
T ss_pred             CccccCCeEEEecccccchhHHHhHhhhcccccc-cCc-------cc-ccccc-----cc----ee---eecccccccc-
Confidence            4568999999999999999999999999999985 343       21 11110     00    01   1112234443 


Q ss_pred             ccceeeccccC-----Ccccccccccc-cceEEEecCCCCC-CHHH-HHHHHhCCCe-Eecccc
Q 012750          327 ECDVLIPCALG-----GVLKRENAADV-KAKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIY  381 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i-~akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~l  381 (457)
                      +|||++-|...     +.|+.+....+ +-.+++--|=+++ ..++ .+.|.++-|. +.=|+.
T Consensus        96 ~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  159 (197)
T d1j4aa1          96 QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY  159 (197)
T ss_dssp             HCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             ccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeecc
Confidence            78999888643     34444444444 3468888888884 5555 4677777664 445543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.02  E-value=0.0042  Score=53.88  Aligned_cols=121  Identities=12%  Similarity=0.174  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe
Q 012750          237 YATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD  316 (457)
Q Consensus       237 ~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~  316 (457)
                      .++..++++.+.+ ++++|+|.|.|.+++.++..|.+.|++-|.|.+++          .+....+.+..+       ..
T Consensus         3 ~G~~~~l~~~~~~-~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~----------~~ka~~L~~~~~-------~~   64 (167)
T d1npya1           3 IAIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN----------VKTGQYLAALYG-------YA   64 (167)
T ss_dssp             HHHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC----------HHHHHHHHHHHT-------CE
T ss_pred             HHHHHHHHHcCCC-CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc----------HHHHHHHHHhhh-------hh
Confidence            4556778888887 78999999999999999999999998555577663          344444333211       12


Q ss_pred             ecCCCcccccccceeeccccCCccccc-c----ccc--c-cceEEEecCCCCC-CHHHHHHHHhCCCeEec
Q 012750          317 SMEPSELLAHECDVLIPCALGGVLKRE-N----AAD--V-KAKFIIEAANHPT-DPEADEILSKRGVTILP  378 (457)
Q Consensus       317 ~i~~~ell~~~~DIliPaA~~~~It~~-n----a~~--i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viP  378 (457)
                      .++  .+...++|++|-|+.-+.-... .    .+.  + +..+|.+-.-.|. |+ --+..+++|..++.
T Consensus        65 ~~~--~~~~~~~DliINaTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~i~  132 (167)
T d1npya1          65 YIN--SLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETP-FIRYAQARGKQTIS  132 (167)
T ss_dssp             EES--CCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCH-HHHHHHHTTCEEEC
T ss_pred             hhh--cccccchhhheeccccCCccccccccccccHhhcCCcceEEEEeeccCCCH-HHHHHHHCCCeEEE
Confidence            221  2224579999999864432211 1    111  1 4678999988885 55 34556788876654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.96  E-value=0.0019  Score=56.43  Aligned_cols=128  Identities=16%  Similarity=0.187  Sum_probs=75.6

Q ss_pred             HHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc--ccCCCCee
Q 012750          240 EALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL--KDFDGGDS  317 (457)
Q Consensus       240 ~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~--~~~~~~~~  317 (457)
                      ...+++.+.+++|++|.|.|.|.+++.++..|.+.| +|. |.+++          .++..+........  ..+.....
T Consensus         6 ~~~l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~-I~nR~----------~~ka~~l~~~~~~~~~~~~~~~~~   73 (177)
T d1nvta1           6 RMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NII-IANRT----------VEKAEALAKEIAEKLNKKFGEEVK   73 (177)
T ss_dssp             HHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEE-EECSS----------HHHHHHHHHHHHHHHTCCHHHHEE
T ss_pred             HHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHcccc-cee-eehhh----------hhHHHHHHHHHHHhhchhhhhhhh
Confidence            444555577899999999999999999999887766 554 66653          44444332211000  00000001


Q ss_pred             cCCCcccccccceeeccccCCccccc------ccccc-cceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750          318 MEPSELLAHECDVLIPCALGGVLKRE------NAADV-KAKFIIEAANHPTDPEADEILSKRGVTILPD  379 (457)
Q Consensus       318 i~~~ell~~~~DIliPaA~~~~It~~------na~~i-~akiIvEgAN~p~t~~a~~iL~~rGI~viPD  379 (457)
                      +..-+-...++|++|.|..-+.....      +...+ +..++.+-...|-...--+..+++|..+++.
T Consensus        74 ~~~~~~~~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~l~~~a~~~G~~~i~G  142 (177)
T d1nvta1          74 FSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAKKVNAKTING  142 (177)
T ss_dssp             EECTTCCCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHHHHHHHTTTCEEECT
T ss_pred             hhhhhhccchhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHhHHHHHHHHHCCCcccCC
Confidence            11112223478999998765433221      12223 5678889998885333455667888888764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.78  E-value=0.002  Score=55.86  Aligned_cols=109  Identities=24%  Similarity=0.415  Sum_probs=70.2

Q ss_pred             HHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCee
Q 012750          238 ATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDS  317 (457)
Q Consensus       238 ~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~  317 (457)
                      +++.+.+.++ ++++++|+|+|.|.+|+.+++.|...|++-+-|+..+          .+...++.++.       +.+.
T Consensus        11 Av~la~~~~~-~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt----------~~ka~~l~~~~-------~~~~   72 (159)
T d1gpja2          11 AVELAERELG-SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT----------YERAVELARDL-------GGEA   72 (159)
T ss_dssp             HHHHHHHHHS-CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS----------HHHHHHHHHHH-------TCEE
T ss_pred             HHHHHHHHhC-CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc----------HHHHHHHHHhh-------hccc
Confidence            3343434455 7999999999999999999999999999766577764          33444444432       1222


Q ss_pred             cCCCccccc--ccceeeccccC--Ccccccccccc-------cceEEEecCCCC-CCHH
Q 012750          318 MEPSELLAH--ECDVLIPCALG--GVLKRENAADV-------KAKFIIEAANHP-TDPE  364 (457)
Q Consensus       318 i~~~ell~~--~~DIliPaA~~--~~It~~na~~i-------~akiIvEgAN~p-~t~~  364 (457)
                      ++-+++.+.  ++||+|-|+..  ..|+.++.+..       +-.+|+.-|.-+ ++|+
T Consensus        73 ~~~~~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~  131 (159)
T d1gpja2          73 VRFDELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVEEG  131 (159)
T ss_dssp             CCGGGHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTT
T ss_pred             ccchhHHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCCCcChh
Confidence            333444433  89999999754  46777766532       223778776433 3443

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.76  E-value=0.0017  Score=58.32  Aligned_cols=105  Identities=23%  Similarity=0.289  Sum_probs=67.5

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      |.++.|++|.|+|+|++|+.+|++|...|.+|++ .|....    ++              .   .......+-++++ .
T Consensus        40 ~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~-~d~~~~----~~--------------~---~~~~~~~~l~~l~-~   96 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA-YDPYPM----KG--------------D---HPDFDYVSLEDLF-K   96 (199)
T ss_dssp             CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSSCC----SS--------------C---CTTCEECCHHHHH-H
T ss_pred             cccccceeeeeeecccccccccccccccceeeec-cCCccc----hh--------------h---hcchhHHHHHHHH-H
Confidence            5678999999999999999999999999999985 343210    00              0   0011222333444 3


Q ss_pred             ccceeeccccC-----Ccccccccccc-cceEEEecCCCCC-CHHH-HHHHHhCCC
Q 012750          327 ECDVLIPCALG-----GVLKRENAADV-KAKFIIEAANHPT-DPEA-DEILSKRGV  374 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i-~akiIvEgAN~p~-t~~a-~~iL~~rGI  374 (457)
                      .||+++.+...     +.|+.+....+ +-.+++--|=+.+ ..++ .+.|.++-|
T Consensus        97 ~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i  152 (199)
T d1dxya1          97 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL  152 (199)
T ss_dssp             HCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred             hcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCc
Confidence            68888877543     34555555555 4578888888885 4444 345655544

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.73  E-value=0.002  Score=57.78  Aligned_cols=117  Identities=21%  Similarity=0.164  Sum_probs=74.5

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccc
Q 012750          246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELL  324 (457)
Q Consensus       246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell  324 (457)
                      .+.++.|++|.|+|||++|+.+|+.|...|++|++ .|.       ..-+ +....           .+.... +-++++
T Consensus        43 ~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~-~d~-------~~~~-~~~~~-----------~~~~~~~~l~~ll  102 (193)
T d1mx3a1          43 GAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLF-YDP-------YLSD-GVERA-----------LGLQRVSTLQDLL  102 (193)
T ss_dssp             TCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE-ECT-------TSCT-THHHH-----------HTCEECSSHHHHH
T ss_pred             CceeeeCceEEEeccccccccceeeeeccccceee-ccC-------cccc-cchhh-----------hccccccchhhcc
Confidence            36679999999999999999999999999999984 333       2111 00000           011222 223444


Q ss_pred             ccccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eecccccc
Q 012750          325 AHECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIYAN  383 (457)
Q Consensus       325 ~~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~laN  383 (457)
                      . .||+++.+...     +.|+.+....++ -.+++--|=+++ ..+| .+.|.++-|. +.=|+..+
T Consensus       103 ~-~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~  169 (193)
T d1mx3a1         103 F-HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES  169 (193)
T ss_dssp             H-HCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred             c-cCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcCCC
Confidence            3 68999766543     344455455553 578899999985 5554 3678777664 55565443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.71  E-value=0.00074  Score=55.90  Aligned_cols=104  Identities=16%  Similarity=0.234  Sum_probs=61.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc-c---ccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL-A---HEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell-~---~~~  328 (457)
                      |+++|+|+|.+|+.+++.|.+.|..|+ |.|.          |.+.+.+..+. +.-.-+.+   .+..+.| .   .+|
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vv-vid~----------d~~~~~~~~~~-~~~~~~gd---~~~~~~l~~a~i~~a   65 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVL-AVDI----------NEEKVNAYASY-ATHAVIAN---ATEENELLSLGIRNF   65 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCE-EEES----------CHHHHHHTTTT-CSEEEECC---TTCTTHHHHHTGGGC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEE-EecC----------cHHHHHHHHHh-CCcceeee---cccchhhhccCCccc
Confidence            579999999999999999999999998 4454          45666655433 21111111   1223333 1   278


Q ss_pred             ceeeccccCCcccc----ccccccc-ceEEEecCCCCCCHHHHHHHHhCCCe
Q 012750          329 DVLIPCALGGVLKR----ENAADVK-AKFIIEAANHPTDPEADEILSKRGVT  375 (457)
Q Consensus       329 DIliPaA~~~~It~----~na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~  375 (457)
                      |.++-+...+.-+-    .-+.... .++|+-..    +++-.++|++-|+-
T Consensus        66 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad  113 (134)
T d2hmva1          66 EYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQ----NYYHHKVLEKIGAD  113 (134)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC----SHHHHHHHHHHTCS
T ss_pred             cEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecc----cHhHHHHHHHCCCC
Confidence            88776654432111    1112222 35666432    46667889998873

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.66  E-value=0.0042  Score=54.98  Aligned_cols=107  Identities=18%  Similarity=0.262  Sum_probs=70.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD  329 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~D  329 (457)
                      +.|++|.|+|+|++|+.++++|...|++|++ .|.+.       -+           +..     ...-+-++++ .+||
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~-~d~~~-------~~-----------~~~-----~~~~~l~ell-~~sD   94 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRG-FSRTP-------KE-----------GPW-----RFTNSLEEAL-REAR   94 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEE-ECSSC-------CC-----------SSS-----CCBSCSHHHH-TTCS
T ss_pred             ccCceEEEeccccccccceeeeecccccccc-ccccc-------cc-----------cce-----eeeechhhhh-hccc
Confidence            8899999999999999999999999999984 34421       00           000     0011223444 3889


Q ss_pred             eeeccccC-----Cccccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCCe-Eecccc
Q 012750          330 VLIPCALG-----GVLKRENAADVK-AKFIIEAANHP-TDPEA-DEILSKRGVT-ILPDIY  381 (457)
Q Consensus       330 IliPaA~~-----~~It~~na~~i~-akiIvEgAN~p-~t~~a-~~iL~~rGI~-viPD~l  381 (457)
                      |++-+...     +.|+.+....++ -.+++.-+=++ +..++ .+.|.++-+. ++=|++
T Consensus        95 iv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~  155 (181)
T d1qp8a1          95 AAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW  155 (181)
T ss_dssp             EEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             hhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecC
Confidence            99887643     455555555553 36778788777 45555 4678887664 455543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.63  E-value=0.0019  Score=56.18  Aligned_cols=116  Identities=17%  Similarity=0.144  Sum_probs=65.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC-Ccccc--cccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP-SELLA--HECD  329 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~-~ell~--~~~D  329 (457)
                      ++|.|+|.|++|..+|+.|.++|+.|. +.|.          +.++..+..++.......+..+.... +++..  .+++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~-~~dr----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVA-VFNR----------TYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPR   70 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEE-EECS----------SHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSC
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEE-EEEC----------CHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccce
Confidence            579999999999999999999999987 4554          36677776666544332222221111 11221  1233


Q ss_pred             eeeccccCCccccc----ccccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecc
Q 012750          330 VLIPCALGGVLKRE----NAADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPD  379 (457)
Q Consensus       330 IliPaA~~~~It~~----na~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD  379 (457)
                      +.+.+.........    ....+ .-++|++-....  .+.+..+.|.++|+.++-.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~lda  127 (178)
T d1pgja2          71 KALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGM  127 (178)
T ss_dssp             EEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             EEEEeecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecc
Confidence            33333222111111    11112 335777766554  3456677899999988753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.01  Score=51.57  Aligned_cols=119  Identities=11%  Similarity=0.111  Sum_probs=68.5

Q ss_pred             HHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC
Q 012750          241 ALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP  320 (457)
Q Consensus       241 ~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~  320 (457)
                      ..++..+.++++++|.|.|.|.+++.++..|.+.+.+|+ |.+++          .+.+....+....   +.....++.
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~-I~nR~----------~~~a~~l~~~~~~---~~~~~~~~~   72 (171)
T d1p77a1           7 TDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIV-LANRT----------FSKTKELAERFQP---YGNIQAVSM   72 (171)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEE-EEESS----------HHHHHHHHHHHGG---GSCEEEEEG
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceee-eccch----------HHHHHHHHHHHhh---ccccchhhh
Confidence            334556889999999999999999999999988777766 66663          3444444332211   111122222


Q ss_pred             CcccccccceeeccccCCccccc---ccccc-cceEEEecCC-CCC-CHHHHHHHHhCCC
Q 012750          321 SELLAHECDVLIPCALGGVLKRE---NAADV-KAKFIIEAAN-HPT-DPEADEILSKRGV  374 (457)
Q Consensus       321 ~ell~~~~DIliPaA~~~~It~~---na~~i-~akiIvEgAN-~p~-t~~a~~iL~~rGI  374 (457)
                      ++.-..++|++|-|+.-+.-...   ....+ +..++.+-.- .|. |+ --+.-+++|.
T Consensus        73 ~~~~~~~~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T~-~l~~A~~~g~  131 (171)
T d1p77a1          73 DSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGL  131 (171)
T ss_dssp             GGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTC
T ss_pred             ccccccccceeeecccccccccccchhhhhhcccceeeeeeccCcccHH-HHHHHHHcCC
Confidence            33334589999999765542221   11111 3456666654 454 44 2344556665

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.59  E-value=0.0013  Score=54.72  Aligned_cols=104  Identities=22%  Similarity=0.313  Sum_probs=62.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc----cccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell----~~~~  328 (457)
                      ++|+|.|+|.+|+.+++.|.+.|..|+ |-|.          |++.+.+..++.+.- -+.+ . .+..++|    -.++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~-vid~----------d~~~~~~~~~~~~~~-vi~G-d-~~~~~~l~~~~i~~a   66 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIV-LIDI----------DKDICKKASAEIDAL-VING-D-CTKIKTLEDAGIEDA   66 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EEES----------CHHHHHHHHHHCSSE-EEES-C-TTSHHHHHHTTTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcc-eecC----------Chhhhhhhhhhhhhh-hccC-c-ccchhhhhhcChhhh
Confidence            589999999999999999999999998 5565          456665554442211 0000 0 1122333    2378


Q ss_pred             ceeeccccCCc---ccccccccccc-eEEEecCCCCCCHHHHHHHHhCCC
Q 012750          329 DVLIPCALGGV---LKRENAADVKA-KFIIEAANHPTDPEADEILSKRGV  374 (457)
Q Consensus       329 DIliPaA~~~~---It~~na~~i~a-kiIvEgAN~p~t~~a~~iL~~rGI  374 (457)
                      |.++-+.....   +....+..+.. ++|+ =+|.   ++-.+.|++-|+
T Consensus        67 ~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~-~~~~---~~~~~~l~~~G~  112 (132)
T d1lssa_          67 DMYIAVTGKEEVNLMSSLLAKSYGINKTIA-RISE---IEYKDVFERLGV  112 (132)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHTTCCCEEE-ECSS---TTHHHHHHHTTC
T ss_pred             hhhcccCCcHHHHHHHHHHHHHcCCceEEE-EecC---HHHHHHHHHCCC
Confidence            88888754432   22223344433 3444 3443   345668999998

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.57  E-value=0.0041  Score=53.13  Aligned_cols=90  Identities=12%  Similarity=0.200  Sum_probs=54.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      +||.|+|+|++|+.+|+.|.++|.+|++ .|.+          .+.+.+.++ .+.+.     ...++.+.+ .+||++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~-~d~~----------~~~~~~a~~-~~~~~-----~~~~~~~~~-~~~DiIi   62 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIG-VSRQ----------QSTCEKAVE-RQLVD-----EAGQDLSLL-QTAKIIF   62 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSC----------HHHHHHHHH-TTSCS-----EEESCGGGG-TTCSEEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEE-EECC----------chHHHHHHH-hhccc-----eeeeecccc-ccccccc
Confidence            5799999999999999999999999974 4552          344443333 23221     122333333 4899999


Q ss_pred             ccccCCccc---ccccccc-cceEEEecCCCC
Q 012750          333 PCALGGVLK---RENAADV-KAKFIIEAANHP  360 (457)
Q Consensus       333 PaA~~~~It---~~na~~i-~akiIvEgAN~p  360 (457)
                      -|.....+.   .+-.+.+ .-.+|+.-++..
T Consensus        63 lavp~~~~~~vl~~l~~~l~~~~iv~~~~s~~   94 (165)
T d2f1ka2          63 LCTPIQLILPTLEKLIPHLSPTAIVTDVASVK   94 (165)
T ss_dssp             ECSCHHHHHHHHHHHGGGSCTTCEEEECCSCC
T ss_pred             ccCcHhhhhhhhhhhhhhcccccceeeccccc
Confidence            886433211   1122223 345777776654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.56  E-value=0.0031  Score=54.22  Aligned_cols=106  Identities=15%  Similarity=0.208  Sum_probs=66.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      ++|.++|.|++|+.+|+.|.++|+.|. +.|.+          .+............       .-++.+.+ ..||+++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~-~~d~~----------~~~~~~~~~~~~~~-------~~~~~e~~-~~~diii   62 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLN-VFDLV----------QSAVDGLVAAGASA-------ARSARDAV-QGADVVI   62 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHTTCEE-------CSSHHHHH-TSCSEEE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEE-EEECc----------hhhhhhhhhhhccc-------cchhhhhc-cccCeee
Confidence            479999999999999999999999987 55653          34443333321111       11222333 3688887


Q ss_pred             ccccCCc-----cccc--ccccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEe
Q 012750          333 PCALGGV-----LKRE--NAADV-KAKFIIEAANHP--TDPEADEILSKRGVTIL  377 (457)
Q Consensus       333 PaA~~~~-----It~~--na~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~vi  377 (457)
                      -|-....     +...  ....+ +-++|++..+..  .+.+..+.|+++|+.++
T Consensus        63 ~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~  117 (162)
T d3cuma2          63 SMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML  117 (162)
T ss_dssp             ECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             ecccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEE
Confidence            7754321     1111  12223 347899888864  34566789999999887

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00096  Score=52.46  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++|++|+|.|+|.-|..+|++|.+.|++|. ++|.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~-~~D~   36 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPR-VMDT   36 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCE-EEES
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEE-EeeC
Confidence            5899999999999999999999999999998 6665

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0063  Score=53.80  Aligned_cols=112  Identities=19%  Similarity=0.275  Sum_probs=72.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++.+++|.|+|||++|+.+|++|...|.+|++. |.....                   .   ......+ +-++++.
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~-d~~~~~-------------------~---~~~~~~~~~l~ell~   95 (188)
T d1sc6a1          39 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY-DIENKL-------------------P---LGNATQVQHLSDLLN   95 (188)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE-CSSCCC-------------------C---CTTCEECSCHHHHHH
T ss_pred             cccccceEEEEeecccchhhhhhhcccccceEeec-cccccc-------------------h---hhhhhhhhhHHHHHh
Confidence            34689999999999999999999999999999853 332110                   0   0011111 1234443


Q ss_pred             cccceeeccccC-----Ccccccccccc-cceEEEecCCCCC-CHHH-HHHHHhCCCe-Eeccccc
Q 012750          326 HECDVLIPCALG-----GVLKRENAADV-KAKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIYA  382 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i-~akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~la  382 (457)
                       .+||++-+...     +.|+++....+ +-.+++--|=+++ ..++ .+.|.++-+. ++=|+..
T Consensus        96 -~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~~  160 (188)
T d1sc6a1          96 -MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFP  160 (188)
T ss_dssp             -HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC--
T ss_pred             -hccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecCC
Confidence             68998877643     45666666666 4478888998884 5555 4667776665 4445443

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.20  E-value=0.0095  Score=52.58  Aligned_cols=114  Identities=25%  Similarity=0.286  Sum_probs=74.4

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|+++.|.|+|++|+.+++++...|.+|++ .|.       .. +.+.....           +.+..+-++++. 
T Consensus        39 ~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~-~d~-------~~-~~~~~~~~-----------~~~~~~l~ell~-   97 (184)
T d1ygya1          39 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA-YDP-------YV-SPARAAQL-----------GIELLSLDDLLA-   97 (184)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE-ECT-------TS-CHHHHHHH-----------TCEECCHHHHHH-
T ss_pred             cccccceeeeeccccchhHHHHHHhhhccceEEe-ecC-------CC-ChhHHhhc-----------CceeccHHHHHh-
Confidence            4568999999999999999999999999999984 333       21 22222111           112223345554 


Q ss_pred             ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eecccc
Q 012750          327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDIY  381 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~l  381 (457)
                      .|||++-+...     +.|+.+....++ --+++--|-+++ ..+|- +.|.++-|. ..=|+.
T Consensus        98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~  161 (184)
T d1ygya1          98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF  161 (184)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSC
T ss_pred             hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCC
Confidence            79999877643     355555555553 468899999984 55543 567777665 334554

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0074  Score=52.77  Aligned_cols=130  Identities=15%  Similarity=0.162  Sum_probs=80.5

Q ss_pred             HHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCC---e
Q 012750          240 EALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGG---D  316 (457)
Q Consensus       240 ~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~---~  316 (457)
                      ...++..|.++++++|+|.|.|.+|+.++..|.+.|++-+.|++++     ++  ..+++....++.+  ..++..   .
T Consensus         6 ~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~-----~~--~~~~~~~l~~~~~--~~~~~~~~~~   76 (182)
T d1vi2a1           6 IRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR-----DE--FFDKALAFAQRVN--ENTDCVVTVT   76 (182)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS-----ST--THHHHHHHHHHHH--HHSSCEEEEE
T ss_pred             HHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc-----hH--HHHHHHHHHHHHH--hhcCcceEee
Confidence            3445667899999999999999999999999999999777788764     22  2344443332210  001110   1


Q ss_pred             ecCCC-ccc--ccccceeeccccCCccc--c----cccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEecc
Q 012750          317 SMEPS-ELL--AHECDVLIPCALGGVLK--R----ENAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILPD  379 (457)
Q Consensus       317 ~i~~~-ell--~~~~DIliPaA~~~~It--~----~na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viPD  379 (457)
                      .+... ++.  -.++|++|-|+.-+.-.  .    .+...+ +..+|.+-.-+|. |+= -+.-+++|..++..
T Consensus        77 ~~~~~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~l-l~~a~~~g~~~i~G  149 (182)
T d1vi2a1          77 DLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKL-LQQAQQAGCKTIDG  149 (182)
T ss_dssp             ETTCHHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCHH-HHHHHTTTCEEECH
T ss_pred             ecccccchhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCccccHH-HHHHHHCcCeEecc
Confidence            11111 122  24889999998644322  1    123334 4579999988874 654 34557888877654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.18  E-value=0.0081  Score=51.32  Aligned_cols=110  Identities=19%  Similarity=0.252  Sum_probs=64.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCee------cC--CCccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDS------ME--PSELL  324 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~------i~--~~ell  324 (457)
                      ++++|+|.|++|..+|..|.+.|..|+ +.|.+          .+.+.+.++.+......++.+.      .+  ..+.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~-~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVL-AWDID----------AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence            799999999999999999999999987 44442          3444444433322222222221      11  11222


Q ss_pred             ccccceeeccccCCccc---ccccccc-cceEEEecCCCCC-CHHHHHHHHhCCC
Q 012750          325 AHECDVLIPCALGGVLK---RENAADV-KAKFIIEAANHPT-DPEADEILSKRGV  374 (457)
Q Consensus       325 ~~~~DIliPaA~~~~It---~~na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI  374 (457)
                       .+||+++-|...+...   ++-++.+ +-.+|+-..|.+. +.+..+.+.+++.
T Consensus        71 -~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          71 -KDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGA  124 (184)
T ss_dssp             -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTTC
T ss_pred             -cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHHHhcC
Confidence             3799999986554322   1123333 2345665555443 4556678887764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.12  E-value=0.0056  Score=53.86  Aligned_cols=46  Identities=20%  Similarity=0.355  Sum_probs=39.3

Q ss_pred             HHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          238 ATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       238 ~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++..+.+..|.+|+|+++.|.| .|.+|+.+++.|.++|++|+ ++++
T Consensus         9 ~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~-~~~r   55 (191)
T d1luaa1           9 GVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVV-LCGR   55 (191)
T ss_dssp             HHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchh-hccc
Confidence            3445566789999999999999 69999999999999999998 5555

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.98  E-value=0.021  Score=50.68  Aligned_cols=116  Identities=16%  Similarity=0.152  Sum_probs=74.8

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA  325 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~  325 (457)
                      +.++.|+++.|+|+|++|+.+|++|...|.+|++ .|.       ..-....-..   .        ..... +-++++ 
T Consensus        42 ~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~-~d~-------~~~~~~~~~~---~--------~~~~~~~l~~ll-  101 (191)
T d1gdha1          42 GEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDY-FDT-------HRASSSDEAS---Y--------QATFHDSLDSLL-  101 (191)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE-ECS-------SCCCHHHHHH---H--------TCEECSSHHHHH-
T ss_pred             cceecccceEEeecccchHHHHHHHHhhcccccc-ccc-------cccccchhhc---c--------cccccCCHHHHH-
Confidence            5678999999999999999999999999999984 333       2221111110   0        11111 112333 


Q ss_pred             cccceeeccccC-----Ccccccccccc-cceEEEecCCCC-CCHHH-HHHHHhCCCe-Eeccccc
Q 012750          326 HECDVLIPCALG-----GVLKRENAADV-KAKFIIEAANHP-TDPEA-DEILSKRGVT-ILPDIYA  382 (457)
Q Consensus       326 ~~~DIliPaA~~-----~~It~~na~~i-~akiIvEgAN~p-~t~~a-~~iL~~rGI~-viPD~la  382 (457)
                      ..||+++.+...     +.|+.+....+ +--+++.-|=++ +..+| .+.|.++-|. ..=|+..
T Consensus       102 ~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~  167 (191)
T d1gdha1         102 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFA  167 (191)
T ss_dssp             HHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             hhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCC
Confidence            378998877633     46666666666 347888888888 46555 4678887775 4556543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.90  E-value=0.031  Score=49.08  Aligned_cols=117  Identities=13%  Similarity=0.120  Sum_probs=75.8

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +.++.|+++.|.|+|++|+.++++|...|.+|++ .|.       ...+.......     .+     ....+.++++ .
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~-~d~-------~~~~~~~~~~~-----~~-----~~~~~l~~~l-~   99 (188)
T d2naca1          39 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHY-TDR-------HRLPESVEKEL-----NL-----TWHATREDMY-P   99 (188)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEE-ECS-------SCCCHHHHHHH-----TC-----EECSSHHHHG-G
T ss_pred             ceeccccceeeccccccchhhhhhhhccCceEEE-Eee-------ccccccccccc-----cc-----cccCCHHHHH-H
Confidence            5679999999999999999999999999999874 343       22222211110     01     1111234444 4


Q ss_pred             ccceeeccccC-----Ccccccccccc-cceEEEecCCCC-CCHHHH-HHHHhCCCe-Eeccccc
Q 012750          327 ECDVLIPCALG-----GVLKRENAADV-KAKFIIEAANHP-TDPEAD-EILSKRGVT-ILPDIYA  382 (457)
Q Consensus       327 ~~DIliPaA~~-----~~It~~na~~i-~akiIvEgAN~p-~t~~a~-~iL~~rGI~-viPD~la  382 (457)
                      .||+++-+...     +.|+.+....+ +-.+++--|-+. +.++|- +.|.++-+. ++=|+..
T Consensus       100 ~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV~~  164 (188)
T d2naca1         100 VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWF  164 (188)
T ss_dssp             GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCS
T ss_pred             hccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeCCC
Confidence            78998776532     45566666665 446899999998 466654 567776665 5667543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.87  E-value=0.0029  Score=53.65  Aligned_cols=106  Identities=22%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      +||.|+|+|++|+.+|+.|.+.|..|+. .|.+-          ......+.+...+.       -+++++. .+||+++
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~-~~~~~----------~~~~~~~~~~~~~~-------~~~~e~~-~~~diIi   61 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVT-SLEGR----------SPSTIERARTVGVT-------ETSEEDV-YSCPVVI   61 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEE-CCTTC----------CHHHHHHHHHHTCE-------ECCHHHH-HTSSEEE
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEE-EcCch----------hHHHHHhhhccccc-------ccHHHHH-hhcCeEE
Confidence            5799999999999999999999999874 44321          01112222211111       1344443 4799999


Q ss_pred             ccccCCccccccccc---ccceEEEecCCCC--CCHHHHHHHHhCCCeEec
Q 012750          333 PCALGGVLKRENAAD---VKAKFIIEAANHP--TDPEADEILSKRGVTILP  378 (457)
Q Consensus       333 PaA~~~~It~~na~~---i~akiIvEgAN~p--~t~~a~~iL~~rGI~viP  378 (457)
                      -|-..+.. .+.+..   ..-+++++.++..  .+.+..+.+.++|.+-.|
T Consensus        62 ~~v~~~~~-~~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~~~~~d~~  111 (152)
T d1i36a2          62 SAVTPGVA-LGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAA  111 (152)
T ss_dssp             ECSCGGGH-HHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSSEEEEEE
T ss_pred             EEecCchH-HHHHHhhcccCCceeeccCcCCHHHHHHHHHHHhccCCCccc
Confidence            88654432 222211   1235677766543  234444556566543333

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.012  Score=51.58  Aligned_cols=55  Identities=24%  Similarity=0.175  Sum_probs=46.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCC
Q 012750          226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       226 gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +.-++|..|++..    +++++.+++|++++|+|-++ ||+-++.+|.++|++|. +++++
T Consensus        15 ~~~PcTp~aI~~l----L~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt-~~h~~   70 (166)
T d1b0aa1          15 RLRPCTPRGIVTL----LERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTT-VTHRF   70 (166)
T ss_dssp             SSCCHHHHHHHHH----HHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE-EECSS
T ss_pred             CCCCchHHHHHHH----HHHcCcccccceEEEEeccccccHHHHHHHHHhhcccc-ccccc
Confidence            3467899888655    55679999999999999765 99999999999999986 77764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.74  E-value=0.0057  Score=49.42  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      .+++|++|.|+|.|+||..-++.|.+.|++|+-++.
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            468999999999999999999999999999985554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.66  E-value=0.0043  Score=52.38  Aligned_cols=121  Identities=16%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc---ccc
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL---AHE  327 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell---~~~  327 (457)
                      .+++|+|.|.|.||+.+|+.|.+.|++|+ |.|.+          .+.+.+..++.........  .......+   -..
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~-v~dr~----------~~~a~~l~~~~~~~~~~~~--~~~~~~~~~~~i~~   67 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVT-VACRT----------LESAKKLSAGVQHSTPISL--DVNDDAALDAEVAK   67 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEE-EEESC----------HHHHHHHHTTCTTEEEEEC--CTTCHHHHHHHHTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEECC----------hHHHHHHHhcccccccccc--cccchhhhHhhhhc
Confidence            36899999999999999999999999987 88874          4555555443222111000  00111111   124


Q ss_pred             cceeeccccCCccc--ccccccccceEEEecCCCCCCHHHHHHHHhCCCeEeccccccc
Q 012750          328 CDVLIPCALGGVLK--RENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANS  384 (457)
Q Consensus       328 ~DIliPaA~~~~It--~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNa  384 (457)
                      .|+.+.+.......  .....+.++.++--....+...+-.+...+++..++.+.....
T Consensus        68 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  126 (182)
T d1e5qa1          68 HDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGYSA  126 (182)
T ss_dssp             SSEEEECSCGGGHHHHHHHHHHHTCEEECSSCCCHHHHHTHHHHHHTTCEEECSCBCCH
T ss_pred             cceeEeeccchhhhHHHHHHHhhccceeecccCcHHHHHHHHHhccccceeehhhhcch
Confidence            56665554322110  1112223555554443322223335567778887777765554

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.45  E-value=0.0077  Score=53.21  Aligned_cols=33  Identities=21%  Similarity=0.471  Sum_probs=29.3

Q ss_pred             eEEEEecChHHHHHHHHHHHC-CCEEEEEECCCC
Q 012750          254 TFVIQGFGNVGSWAARLIHER-GGKVIAVSDITG  286 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G  286 (457)
                      ||+|-|||.+|+.++|.|.+. ..+||+|.|...
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~   36 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSP   36 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            799999999999999999865 689999999753

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.25  E-value=0.014  Score=50.43  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=30.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  285 (457)
                      +..||+|.|+|++|+..++.|.+. +..+|+|+|.+
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~   37 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecc
Confidence            557899999999999999998764 78999999875

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.02  Score=50.14  Aligned_cols=53  Identities=21%  Similarity=0.212  Sum_probs=45.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCC
Q 012750          228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+.|..|++..    ++++|.+++|++|+|+|-++ ||+-++.+|.++|++|. +++++
T Consensus        19 ~PcTp~aii~l----L~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt-~~~~~   72 (170)
T d1a4ia1          19 IPCTPKGCLEL----IKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVT-TCHSK   72 (170)
T ss_dssp             CCHHHHHHHHH----HHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTT
T ss_pred             CCChHHHHHHH----HHHhCcccccceEEEEecCCccchHHHHHHHhccCceE-EEecc
Confidence            47898888655    55679999999999999755 99999999999999998 77764

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=95.17  E-value=0.13  Score=44.67  Aligned_cols=32  Identities=34%  Similarity=0.710  Sum_probs=29.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +||+|=|||-+|+.+.|.|.+.+.+||+|-|.
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~   32 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDL   32 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCC
Confidence            47999999999999999999999999999875

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.12  E-value=0.018  Score=48.79  Aligned_cols=103  Identities=22%  Similarity=0.271  Sum_probs=60.1

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeec
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIP  333 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliP  333 (457)
                      ||.++|.|++|..+|+.|.+.|..++ ..|.           .++..+..++.+..        .+..+.+ .++|+++-
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~-~~~~-----------~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~i~   60 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLV-WNRT-----------FEKALRHQEEFGSE--------AVPLERV-AEARVIFT   60 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEE-ECSS-----------THHHHHHHHHHCCE--------ECCGGGG-GGCSEEEE
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEE-EeCC-----------HHHHHHHHHHcCCc--------ccccccc-cceeEEEe
Confidence            69999999999999999998888654 3332           12333333332222        1122222 25677766


Q ss_pred             cccCCcccccc----cc-cccceEEEecCCCC--CCHHHHHHHHhCCCeEe
Q 012750          334 CALGGVLKREN----AA-DVKAKFIIEAANHP--TDPEADEILSKRGVTIL  377 (457)
Q Consensus       334 aA~~~~It~~n----a~-~i~akiIvEgAN~p--~t~~a~~iL~~rGI~vi  377 (457)
                      |-.....-..-    .. .-+-+++++.+...  .+.+..+.|+++|+.++
T Consensus        61 ~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~l  111 (156)
T d2cvza2          61 CLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYL  111 (156)
T ss_dssp             CCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             cccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEE
Confidence            64332111111    11 12557777766543  34566789999999988

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=94.99  E-value=0.037  Score=46.54  Aligned_cols=113  Identities=15%  Similarity=0.183  Sum_probs=67.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccccee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIl  331 (457)
                      +++.++|.||+|+.+++-|.+.| .+|. ++|.+          .+.+.++.++.+       ....++.+.+. +||++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~-v~~r~----------~~~~~~l~~~~~-------~~~~~~~~~v~-~~Div   61 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIY-IANRG----------AEKRERLEKELG-------VETSATLPELH-SDDVL   61 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEE-EECSS----------HHHHHHHHHHTC-------CEEESSCCCCC-TTSEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEE-EEeCC----------hhHHHHhhhhcc-------ccccccccccc-ccceE
Confidence            47999999999999999777666 7776 66663          455555555432       22233333333 68999


Q ss_pred             eccccCCcccccccccc--cceEEEecCCCCCCHHHHHHHHhC--CCeEecccccccC
Q 012750          332 IPCALGGVLKRENAADV--KAKFIIEAANHPTDPEADEILSKR--GVTILPDIYANSG  385 (457)
Q Consensus       332 iPaA~~~~It~~na~~i--~akiIvEgAN~p~t~~a~~iL~~r--GI~viPD~laNaG  385 (457)
                      +-|-....+. +-.+.+  .-++|+.-+.+..+....+.|...  =+...|..-+-.|
T Consensus        62 ~lavkP~~~~-~v~~~l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~  118 (152)
T d1yqga2          62 ILAVKPQDME-AACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIG  118 (152)
T ss_dssp             EECSCHHHHH-HHHTTCCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGT
T ss_pred             EEecCHHHHH-HhHHHHhhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhc
Confidence            9775432221 111122  246888888876555555666432  2566776654433

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.97  E-value=0.023  Score=48.11  Aligned_cols=98  Identities=13%  Similarity=0.151  Sum_probs=60.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI  332 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli  332 (457)
                      +++.++|+|++|+.+++-|.+.|.+|+ |++.+          .+.+.++.++.+-..      .-+++++. ..||+++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~-v~~r~----------~~~~~~l~~~~g~~~------~~~~~~~~-~~~dvIi   62 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELI-ISGSS----------LERSKEIAEQLALPY------AMSHQDLI-DQVDLVI   62 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEE-EECSS----------HHHHHHHHHHHTCCB------CSSHHHHH-HTCSEEE
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEE-EEcCh----------HHhHHhhccccceee------echhhhhh-hccceee
Confidence            579999999999999999999999987 66652          456666655433110      11334454 3799999


Q ss_pred             ccccCCcccccccccc-cceEEEecCCCCCCHHHHHHH
Q 012750          333 PCALGGVLKRENAADV-KAKFIIEAANHPTDPEADEIL  369 (457)
Q Consensus       333 PaA~~~~It~~na~~i-~akiIvEgAN~p~t~~a~~iL  369 (457)
                      -|-..+.+. +-.+.+ +-++|+.-+.+.....-++.|
T Consensus        63 lavkp~~~~-~vl~~l~~~~~iis~~agi~~~~l~~~l   99 (152)
T d2ahra2          63 LGIKPQLFE-TVLKPLHFKQPIISMAAGISLQRLATFV   99 (152)
T ss_dssp             ECSCGGGHH-HHHTTSCCCSCEEECCTTCCHHHHHHHH
T ss_pred             eecchHhHH-HHhhhcccceeEecccccccHHHHHhhh
Confidence            886544332 222222 225666666654434444455

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.73  E-value=0.031  Score=48.90  Aligned_cols=72  Identities=29%  Similarity=0.310  Sum_probs=48.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc---cc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL---AH  326 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell---~~  326 (457)
                      .+..+|+|+|.|++|..+++.....|++|. +.|.          +++.+.+.....+.-.    ....+.++.+   -.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~-~~D~----------~~~~l~~l~~~~~~~~----~~~~~~~~~l~~~~~   94 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQ-IFDI----------NVERLSYLETLFGSRV----ELLYSNSAEIETAVA   94 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES----------CHHHHHHHHHHHGGGS----EEEECCHHHHHHHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEE-EEeC----------cHHHHHHHHHhhcccc----eeehhhhhhHHHhhc
Confidence            356789999999999999999999999998 6776          3555554433221110    1112333333   13


Q ss_pred             ccceeecccc
Q 012750          327 ECDVLIPCAL  336 (457)
Q Consensus       327 ~~DIliPaA~  336 (457)
                      +|||+|=|++
T Consensus        95 ~aDivI~aal  104 (168)
T d1pjca1          95 EADLLIGAVL  104 (168)
T ss_dssp             TCSEEEECCC
T ss_pred             cCcEEEEeee
Confidence            8999998886

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=94.55  E-value=0.09  Score=45.79  Aligned_cols=33  Identities=36%  Similarity=0.512  Sum_probs=30.3

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITG  286 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  286 (457)
                      ||+|=|||-+|+.+.|.+.+.+.+||+|-|..+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~   34 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFI   34 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTS
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCc
Confidence            789999999999999999999999999988754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.48  E-value=0.1  Score=47.40  Aligned_cols=123  Identities=21%  Similarity=0.247  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCC---CCHHHHHHhHhhcC
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADG---IDIHKLLAHKDKTG  307 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~G---LDi~~L~~~~~~~g  307 (457)
                      ||-=+..++-.+++..|.+|+..||++.|-|..|-.++++|.+.+.+=+-..|++|-+++...   ++..+  ....+..
T Consensus         5 TaaV~LAgll~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~--~~~~~~~   82 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYH--LEIARIT   82 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHH--HHHHHTS
T ss_pred             HHHHHHHHHHHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHH--HHHHhhh
Confidence            444455667778888899999999999999999999999999988877778999999987642   44222  2111110


Q ss_pred             CcccCCCCeecCCCcccccccceeeccccCCcccccccccccc-eEEEecCCCCC
Q 012750          308 SLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA-KFIIEAANHPT  361 (457)
Q Consensus       308 ~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~p~  361 (457)
                      ....    ..-+-.+.+ ..+|+++-...+++++++.+.+..- .+|---+| |+
T Consensus        83 ~~~~----~~~~l~~~l-~g~~~~~g~~~~~~~~~e~m~~~~~rPIIFpLSN-Pt  131 (222)
T d1vl6a1          83 NPER----LSGDLETAL-EGADFFIGVSRGNILKPEWIKKMSRKPVIFALAN-PV  131 (222)
T ss_dssp             CTTC----CCSCHHHHH-TTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCS-SS
T ss_pred             cchh----hhcchHhhc-cCcceeccccccccccHHHHhhcCCCCEEEecCC-Cc
Confidence            0000    000001222 2688998888899999876655432 57776676 54

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.19  E-value=0.17  Score=42.89  Aligned_cols=55  Identities=25%  Similarity=0.319  Sum_probs=38.2

Q ss_pred             chHHHHHHHHH-HHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          230 ATGRGVVYATE-ALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       230 aTg~Gv~~~~~-~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |.+.++.+..- .++.+.+.--+|.+|.|.| .|.||..+++++...|+++++++++
T Consensus         3 AA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_           3 AATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             hhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecc
Confidence            44444444332 2333333223588999988 5999999999999999999987765

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.18  E-value=0.015  Score=50.92  Aligned_cols=33  Identities=36%  Similarity=0.517  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  285 (457)
                      ++|+|-|||.+|+.++|.|.+. ..+||+|.|..
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~   35 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTR   35 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESS
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCC
Confidence            4899999999999999988765 48999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.02  E-value=0.028  Score=47.20  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=32.1

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      ..++|++|+|+|.|+||..-++.|.+.|++|+=|+
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            45899999999999999999999999999998665

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.92  E-value=0.056  Score=47.27  Aligned_cols=56  Identities=23%  Similarity=0.256  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHHH-----HHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECCCC
Q 012750          230 ATGRGVVYATEAL-----LAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDITG  286 (457)
Q Consensus       230 aTg~Gv~~~~~~~-----l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~G  286 (457)
                      +|.+|+...++..     +...|.+++|++++|+|=+ .||+-+|.+|.++|+.|. +++++.
T Consensus         2 cTp~gv~~LL~~y~I~~~~~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt-~~~~~~   63 (171)
T d1edza1           2 CTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVY-SVDVNN   63 (171)
T ss_dssp             HHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEE-EECSSE
T ss_pred             CcHHHHHHHHHHcCcccccccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEE-Eecccc
Confidence            5777775554432     0012348999999999965 589999999999999887 787753

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.85  E-value=0.31  Score=42.19  Aligned_cols=32  Identities=38%  Similarity=0.683  Sum_probs=27.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      .||+|=|||-+|+.+.|.+.+.   ..+||+|-|.
T Consensus         1 ~kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            4799999999999999988753   5899999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.66  E-value=0.092  Score=44.26  Aligned_cols=104  Identities=15%  Similarity=0.190  Sum_probs=60.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGG--KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI  330 (457)
                      ++|.|+|+|++|..+|+.|.+.|.  +|++ .|.       +   .+.+...++ .+.+..+    ..+.++....++|+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~-~D~-------~---~~~~~~a~~-~~~~~~~----~~~~~~~~~~~~dl   65 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYG-YDI-------N---PESISKAVD-LGIIDEG----TTSIAKVEDFSPDF   65 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEE-ECS-------C---HHHHHHHHH-TTSCSEE----ESCGGGGGGTCCSE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEE-EEC-------C---hHHHHHHHH-hhcchhh----hhhhhhhhcccccc
Confidence            369999999999999999999985  6664 344       2   344433333 3322211    11222334458999


Q ss_pred             eeccccCCcccc---cccccc-cceEEEecCCCC--CCHHHHHHHHhC
Q 012750          331 LIPCALGGVLKR---ENAADV-KAKFIIEAANHP--TDPEADEILSKR  372 (457)
Q Consensus       331 liPaA~~~~It~---~na~~i-~akiIvEgAN~p--~t~~a~~iL~~r  372 (457)
                      ++-|.....+.+   +-.+.+ .-.+|.+-+...  +..+.++.+.++
T Consensus        66 Iila~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~  113 (171)
T d2g5ca2          66 VMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR  113 (171)
T ss_dssp             EEECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG
T ss_pred             ccccCCchhhhhhhhhhhccccccccccccccccHHHHHHHHHhhccc
Confidence            999986554322   112223 346888877754  334445556555

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.57  E-value=0.34  Score=41.75  Aligned_cols=33  Identities=30%  Similarity=0.437  Sum_probs=28.9

Q ss_pred             eEEEEecChHHHHHHHHHHHC-CCEEEEEECCCC
Q 012750          254 TFVIQGFGNVGSWAARLIHER-GGKVIAVSDITG  286 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G  286 (457)
                      ||+|=|||-+|+.+.|.+.+. ..+||+|-|..+
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~   35 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFM   35 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCC
Confidence            789999999999999988864 789999988754

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=93.48  E-value=0.35  Score=41.96  Aligned_cols=32  Identities=25%  Similarity=0.507  Sum_probs=27.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC----CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER----GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~----GakVVaVsD~  284 (457)
                      .||+|=|||-+|+.++|.+.+.    ..+||+|-|.
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            4799999999999999998764    4689999886

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.083  Score=44.79  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=32.8

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++.+.. .|.+|+|+|.|.||..+++++...|+++|++++.
T Consensus        24 ~~~~~~-~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~   63 (168)
T d1uufa2          24 RHWQAG-PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS   63 (168)
T ss_dssp             HHTTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             HHhCCC-CCCEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence            443443 6899999999999999999999999999965544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.12  E-value=0.076  Score=48.16  Aligned_cols=76  Identities=16%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCC----c
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPS----E  322 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~----e  322 (457)
                      ++|+|+++.|.|- +.+|+.+|+.|.+.|++|+ +.|.          +.+++.+..++.+.+..+. . .+++.    +
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~-~~~r----------~~~~l~~~~~~~~~~~~~~-~-Dv~~~~~v~~   67 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVV-AVTR----------TNSDLVSLAKECPGIEPVC-V-DLGDWDATEK   67 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES----------CHHHHHHHHHHSTTCEEEE-C-CTTCHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHHHHhcCCCeEEE-E-eCCCHHHHHH
Confidence            3689999999985 7799999999999999998 4554          2456666555543332111 0 01111    1


Q ss_pred             ccc--cccceeecccc
Q 012750          323 LLA--HECDVLIPCAL  336 (457)
Q Consensus       323 ll~--~~~DIliPaA~  336 (457)
                      +++  -+.|+||.+|-
T Consensus        68 ~~~~~g~iDilVnnAg   83 (242)
T d1cyda_          68 ALGGIGPVDLLVNNAA   83 (242)
T ss_dssp             HHTTCCCCSEEEECCC
T ss_pred             HHHHcCCCeEEEECCc
Confidence            222  27899999884

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.36  Score=41.65  Aligned_cols=32  Identities=28%  Similarity=0.595  Sum_probs=28.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .||+|=|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            4799999999999999988876 5899999885

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.99  E-value=0.04  Score=45.86  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=27.9

Q ss_pred             CeEEEE-ecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQ-GFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIq-GfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +||+|+ |.|++|+.+|+.|.+.|++|+ +.++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~-l~~R   32 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIV-VGSR   32 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEE-EEES
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            579999 789999999999999999998 6665

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.90  E-value=0.082  Score=44.88  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=33.1

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       243 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +++.+.. .|.+|+|+|.|.||..++.++...|++|++++.+
T Consensus        20 l~~~~~~-~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~   60 (168)
T d1piwa2          20 LVRNGCG-PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRS   60 (168)
T ss_dssp             HHHTTCS-TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             HHHhCcC-CCCEEEEECCCCcchhHHHHhhhccccccccccc
Confidence            3444443 7889999999999999999998899999976543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.67  E-value=0.037  Score=47.02  Aligned_cols=35  Identities=14%  Similarity=0.150  Sum_probs=29.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .++||+|+|-|+.|..+|..|.++|++-|.|.|..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            36899999999999999999999999633477764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.64  E-value=0.056  Score=46.99  Aligned_cols=33  Identities=24%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +|||+|+|-|.-|..+|..|.++|.+|+ |.|.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~-vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVT-VFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEE-EECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEE-EEeCC
Confidence            6899999999999999999999999987 88763

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=92.44  E-value=0.68  Score=40.00  Aligned_cols=32  Identities=34%  Similarity=0.547  Sum_probs=27.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  284 (457)
                      +||+|=|||-+|+.+.|.+.+.   ...||+|-|.
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~   35 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT   35 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence            4799999999999999987753   3789998876

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=92.33  E-value=0.56  Score=40.46  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=28.8

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITG  286 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G  286 (457)
                      .||+|=|||-+|+.+.|.+.+ ...+||+|-|..+
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~   36 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFI   36 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSS
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCc
Confidence            589999999999999997765 4689999988643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.18  E-value=0.19  Score=42.14  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=31.5

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750          243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       243 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  281 (457)
                      +++.+.. .|.+|+|+|.|.||..++.++...|++|+++
T Consensus        19 ~~~~~~~-~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v   56 (170)
T d1e3ja2          19 CRRAGVQ-LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCT   56 (170)
T ss_dssp             HHHHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHhCCC-CCCEEEEEcccccchhhHhhHhhhccccccc
Confidence            3444443 6789999999999999999999999999965

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.16  E-value=0.38  Score=40.53  Aligned_cols=111  Identities=13%  Similarity=0.121  Sum_probs=63.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecC-CCc----cc
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME-PSE----LL  324 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~-~~e----ll  324 (457)
                      -.|.+|.|.|.|.+|..++.++...|++.|.++|.+          .+++. ..++.+.-      ..++ .++    .+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~----------~~k~~-~~~~~ga~------~~i~~~~~~~~~~~   93 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK----------EEKLK-LAERLGAD------HVVDARRDPVKQVM   93 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS----------HHHHH-HHHHTTCS------EEEETTSCHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccch----------hHHHH-HHhhcccc------eeecCcccHHHHHH
Confidence            357899999999999999999988898666577763          23333 33332211      1111 111    11


Q ss_pred             ----ccccceeeccccCCcccccccc--cccceEEEecCCCCCCHHHHHHHHhCCCeEec
Q 012750          325 ----AHECDVLIPCALGGVLKRENAA--DVKAKFIIEAANHPTDPEADEILSKRGVTILP  378 (457)
Q Consensus       325 ----~~~~DIliPaA~~~~It~~na~--~i~akiIvEgAN~p~t~~a~~iL~~rGI~viP  378 (457)
                          ...+|+.+.|+.....-+...+  +-..++|.=|...+.+-.... +..|.+.+.-
T Consensus        94 ~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~-l~~k~~~i~G  152 (172)
T d1h2ba2          94 ELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGELRFPTIR-VISSEVSFEG  152 (172)
T ss_dssp             HHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSSCCCCCHHH-HHHTTCEEEE
T ss_pred             HhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcccccCCHHH-HHhCCcEEEE
Confidence                2358999999765432222222  336688876654443322222 3446666543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.079  Score=44.01  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=28.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +||+|.|.|++|+.++..|.+.|..|..+..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r   31 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLR   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence            5899999999999999999999999986653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.04  E-value=0.29  Score=42.12  Aligned_cols=35  Identities=23%  Similarity=0.212  Sum_probs=30.3

Q ss_pred             CCCCeEEEE--ecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQ--GFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIq--GfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -.|.+|+|+  |.|.||..+.++....|++||+++..
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~   63 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRD   63 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEec
Confidence            357889998  57999999999998999999988765

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=91.88  E-value=0.078  Score=44.13  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=29.4

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ..=++|+|+| .|++|+++|+.|.++|+.|. +.|.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~-~~d~   41 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPIS-ILDR   41 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEE-EECT
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcE-eccc
Confidence            3446899999 99999999999999999987 5665

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.84  E-value=0.2  Score=40.51  Aligned_cols=47  Identities=28%  Similarity=0.213  Sum_probs=35.4

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHH
Q 012750          249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIH  297 (457)
Q Consensus       249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~  297 (457)
                      +.++++|+|+|.|.+|..+|..|.+.|.+|. +.+....+. |.-+|.+
T Consensus        27 ~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vt-lie~~~~~l-~~~~d~~   73 (123)
T d1nhpa2          27 DPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT-VIDILDRPL-GVYLDKE   73 (123)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSSSTT-TTTCCHH
T ss_pred             ccCCCEEEEECChHHHHHHHHHhhccceEEE-EEEecCccc-ccccchh
Confidence            4567899999999999999999999999987 555543333 2235543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=91.69  E-value=0.11  Score=44.75  Aligned_cols=109  Identities=18%  Similarity=0.110  Sum_probs=64.6

Q ss_pred             CCCCeEEEEecChHHHH-HHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-
Q 012750          250 IRDLTFVIQGFGNVGSW-AARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-  325 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~-~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-  325 (457)
                      ++..||+|+|+|.+|+. .+..+.+.  ..+|+||+|.+          .+...+..++.+...-|     -+.+++++ 
T Consensus         1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~----------~~~~~~~~~~~~~~~~~-----~~~~ell~~   65 (181)
T d1zh8a1           1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT----------RSHAEEFAKMVGNPAVF-----DSYEELLES   65 (181)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSS----------HHHHHHHHHHHSSCEEE-----SCHHHHHHS
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEecc----------Hhhhhhhhcccccccee-----eeeeccccc
Confidence            35578999999999986 46777653  36999999873          45555544443221112     13356664 


Q ss_pred             cccceeeccccCCccccccccc---ccceEEEecCCCCC--C-HHHHHH---HHhCCCeEe
Q 012750          326 HECDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPT--D-PEADEI---LSKRGVTIL  377 (457)
Q Consensus       326 ~~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~~a~~i---L~~rGI~vi  377 (457)
                      .++|+++=|+. +..+.+.+..   -+..+++|=   |+  + .++.++   .+++|+.+.
T Consensus        66 ~~id~v~I~tp-~~~h~~~~~~al~~gk~V~~EK---Pl~~~~~e~~~l~~~~~~~~~~~~  122 (181)
T d1zh8a1          66 GLVDAVDLTLP-VELNLPFIEKALRKGVHVICEK---PISTDVETGKKVVELSEKSEKTVY  122 (181)
T ss_dssp             SCCSEEEECCC-GGGHHHHHHHHHHTTCEEEEES---SSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred             cccceeecccc-ccccccccccccccchhhhcCC---CCcCCHHHHHHHHHHHHHhCCeEE
Confidence            47898887754 3334333333   245788886   53  2 344443   445666553

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=91.60  E-value=0.17  Score=42.57  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=27.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCC--EEEEEECC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDI  284 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  284 (457)
                      +.++|+|+|.|+||+.+|..|..+|.  .|+ +.|.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elv-L~D~   38 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFV-IVDV   38 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEE-Eeec
Confidence            45799999999999999999988773  565 5564

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.60  E-value=0.15  Score=43.57  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=31.7

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECC
Q 012750          244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDI  284 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~  284 (457)
                      ++.+.--+|.+|.|+|.|.||..++.++...|+ +|++ +|.
T Consensus        21 ~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~-~~~   61 (182)
T d1vj0a2          21 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIV-IAG   61 (182)
T ss_dssp             HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEE-EES
T ss_pred             HHHhCCCCCCEEEEECCCccchhheecccccccccccc-ccc
Confidence            333333478999999999999999999999998 6774 454

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.48  E-value=0.19  Score=40.67  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=30.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG  286 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  286 (457)
                      ++++++|+|-|-+|..+|..|.+.|.+|. +.+...
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vt-li~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVS-LVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEE-EEeecc
Confidence            45899999999999999999999999988 555543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=91.24  E-value=0.061  Score=44.71  Aligned_cols=85  Identities=8%  Similarity=0.074  Sum_probs=48.8

Q ss_pred             EEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeecc
Q 012750          255 FVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPC  334 (457)
Q Consensus       255 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPa  334 (457)
                      +.++|.||+|+++++.|.+ +..++.|.++          +.+.+.++.++.+..       ..++.+.. ..+||++-|
T Consensus         2 IgfIG~G~mg~~l~~~L~~-~~~~~~v~~R----------~~~~~~~l~~~~~~~-------~~~~~~~~-~~~DiVil~   62 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKD-RYEIGYILSR----------SIDRARNLAEVYGGK-------AATLEKHP-ELNGVVFVI   62 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC-----CCCEECS----------SHHHHHHHHHHTCCC-------CCSSCCCC-C---CEEEC
T ss_pred             EEEEeCcHHHHHHHHHHHh-CCCEEEEEeC----------Chhhhcchhhccccc-------ccchhhhh-ccCcEEEEe
Confidence            4579999999999998865 5555444443          367777776654322       22444444 368999988


Q ss_pred             ccCCcccccccccc--cceEEEecCCC
Q 012750          335 ALGGVLKRENAADV--KAKFIIEAANH  359 (457)
Q Consensus       335 A~~~~It~~na~~i--~akiIvEgAN~  359 (457)
                      -..+.+.+ -+..+  +-++|+.-++.
T Consensus        63 v~d~~i~~-v~~~l~~~~~ivi~~s~~   88 (153)
T d2i76a2          63 VPDRYIKT-VANHLNLGDAVLVHCSGF   88 (153)
T ss_dssp             SCTTTHHH-HHTTTCCSSCCEEECCSS
T ss_pred             ccchhhhH-HHhhhcccceeeeecccc
Confidence            65554432 23333  45788877764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=91.09  E-value=0.15  Score=44.72  Aligned_cols=35  Identities=20%  Similarity=0.119  Sum_probs=31.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +...||+|+|.|..|..+|..|.++|.+|+ |.|.+
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~-v~Er~   36 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGVDVD-VYERS   36 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCCEE-EEeCC
Confidence            456799999999999999999999999998 88864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.09  E-value=0.27  Score=41.07  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750          245 EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS  282 (457)
Q Consensus       245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  282 (457)
                      +.+.. .|.+|+|.|.|.||..++.++...|++|+++.
T Consensus        22 ~~~~~-~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~   58 (166)
T d1llua2          22 QTNAR-PGQWVAISGIGGLGHVAVQYARAMGLHVAAID   58 (166)
T ss_dssp             HHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HhCCC-CCCEEEEeeccccHHHHHHHHHHcCCccceec
Confidence            33443 58899999999999999999999999999653

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=90.95  E-value=0.94  Score=39.04  Aligned_cols=32  Identities=31%  Similarity=0.495  Sum_probs=28.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  284 (457)
                      .||+|=|||-+|+.+.|.+.+. ..+|++|-|.
T Consensus         2 ikIgINGfGRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            3799999999999999988765 6899999886

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.87  E-value=1.1  Score=39.29  Aligned_cols=42  Identities=29%  Similarity=0.472  Sum_probs=32.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-----CEEEEEECCCCeeeCCCCCCHHHHHHh
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG-----GKVIAVSDITGAVKNADGIDIHKLLAH  302 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G-----akVVaVsD~~G~iynp~GLDi~~L~~~  302 (457)
                      .+|+|=|||-+|+.+.|.+.+.+     ..||+|-|..        .|++.+.-+
T Consensus         3 ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~--------~~~~~~ayL   49 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMN--------TDAEYFAYQ   49 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESC--------CCHHHHHHH
T ss_pred             eEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCC--------CCHHHHHHH
Confidence            58999999999999999887754     4889888764        356665433

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=90.85  E-value=0.13  Score=44.11  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=70.1

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccc
Q 012750          252 DLTFVIQGF-GNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD  329 (457)
Q Consensus       252 g~~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~D  329 (457)
                      ..+|+|.|+ |.+|+.+++.+.+ .+.+++|..|+.+.-+  -|-|..++...        ...+....+..+.+..+||
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~--~g~d~~~~~~~--------~~~~~~~~~~~~~~~~~~D   73 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL--LGSDAGELAGA--------GKTGVTVQSSLDAVKDDFD   73 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT--CSCCTTCSSSS--------SCCSCCEESCSTTTTTSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchh--ccchhhhhhcc--------ccCCceeeccHHHHhcccc
Confidence            468999995 9999999998876 5889998888765321  12232221110        0111122222333445899


Q ss_pred             eeeccccCCccccccc---ccccceEEEecCCCCCCHHHHHHHHh----CCCeEeccccc
Q 012750          330 VLIPCALGGVLKRENA---ADVKAKFIIEAANHPTDPEADEILSK----RGVTILPDIYA  382 (457)
Q Consensus       330 IliPaA~~~~It~~na---~~i~akiIvEgAN~p~t~~a~~iL~~----rGI~viPD~la  382 (457)
                      |+|.-+..... .+|+   .+.+..+|++-.-  ++++-.+.|++    -+|++.|-+..
T Consensus        74 ViIDFs~p~~~-~~~~~~a~~~~~~~ViGTTG--~~~~~~~~i~~~a~~ipi~~apN~Sl  130 (162)
T d1diha1          74 VFIDFTRPEGT-LNHLAFCRQHGKGMVIGTTG--FDEAGKQAIRDAAADIAIVFAANFSM  130 (162)
T ss_dssp             EEEECSCHHHH-HHHHHHHHHTTCEEEECCCC--CCHHHHHHHHHHTTTSCEEECSCCCH
T ss_pred             eEEEeccHHHH-HHHHHHHHhccceeEEecCC--CcHHHHHHHHHHcCCCCEEEEccccH
Confidence            99998766432 2333   4457888886433  46655555554    45677777653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.57  E-value=0.24  Score=42.52  Aligned_cols=36  Identities=28%  Similarity=0.221  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.|.+|+|+|.|.||..++.++...|++.|-++|++
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            478899999999999999999999999766588874

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.45  E-value=0.21  Score=42.74  Aligned_cols=36  Identities=22%  Similarity=0.147  Sum_probs=30.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.|.+|+|+|.|.||..++.++...|++.|.++|++
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            478899999999999999999999998555477763

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.29  Score=44.06  Aligned_cols=77  Identities=14%  Similarity=0.161  Sum_probs=49.9

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC----Cc
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP----SE  322 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~----~e  322 (457)
                      ..|+||++.|.| .+.+|+.+|+.|.+.|++|+ +.|.+          .+++.+..++.+.+..+. . .+++    ++
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~-~~~r~----------~~~l~~~~~~~~~~~~~~-~-Dv~d~~~v~~   69 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVV-AVSRT----------QADLDSLVRECPGIEPVC-V-DLGDWEATER   69 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESC----------HHHHHHHHHHSTTCEEEE-C-CTTCHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEECC----------HHHHHHHHHhcCCCeEEE-E-eCCCHHHHHH
Confidence            468999999998 48899999999999999998 55542          455655555543322111 0 0111    11


Q ss_pred             ccc--cccceeeccccC
Q 012750          323 LLA--HECDVLIPCALG  337 (457)
Q Consensus       323 ll~--~~~DIliPaA~~  337 (457)
                      +++  -+.|+||-+|..
T Consensus        70 ~~~~~g~iDilVnnAg~   86 (244)
T d1pr9a_          70 ALGSVGPVDLLVNNAAV   86 (244)
T ss_dssp             HHTTCCCCCEEEECCCC
T ss_pred             HHHHhCCceEEEecccc
Confidence            222  278999988744

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.32  E-value=0.2  Score=43.31  Aligned_cols=120  Identities=17%  Similarity=0.143  Sum_probs=66.2

Q ss_pred             HhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcc
Q 012750          245 EHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL  323 (457)
Q Consensus       245 ~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~el  323 (457)
                      +.|...+|.+|.|+| -|.||..+.++....|++|++.+.++..        .+.+.++-..  .+.+|.....-.....
T Consensus        25 ~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k--------~~~~~~lGa~--~vi~~~~~~~~~~~~~   94 (176)
T d1xa0a2          25 EHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE--------HDYLRVLGAK--EVLAREDVMAERIRPL   94 (176)
T ss_dssp             HTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC--------HHHHHHTTCS--EEEECC---------C
T ss_pred             HhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH--------HHHHHhcccc--eeeecchhHHHHHHHh
Confidence            456667899999999 6999999999999999999988765331        2222221110  1122221100000111


Q ss_pred             cccccceeeccccCCcccccccccc--cceEEEecCCCC--CCHHHHHHHHhCCCeE
Q 012750          324 LAHECDVLIPCALGGVLKRENAADV--KAKFIIEAANHP--TDPEADEILSKRGVTI  376 (457)
Q Consensus       324 l~~~~DIliPaA~~~~It~~na~~i--~akiIvEgAN~p--~t~~a~~iL~~rGI~v  376 (457)
                      -...+|+.+.+..+. ....+...+  ..++|.-|.-.+  .+..... +.-|++.+
T Consensus        95 ~~~gvD~vid~vgg~-~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~-~~~k~~~i  149 (176)
T d1xa0a2          95 DKQRWAAAVDPVGGR-TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHP-FILRGVSL  149 (176)
T ss_dssp             CSCCEEEEEECSTTT-THHHHHHTEEEEEEEEECSCCSSSCCCCCSHH-HHHTTCEE
T ss_pred             hccCcCEEEEcCCch-hHHHHHHHhCCCceEEEeecccCcccCCCHHH-HHHCCcEE
Confidence            234789999886544 333444433  567877665433  2222333 34455654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.27  E-value=0.36  Score=40.16  Aligned_cols=95  Identities=19%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             eEEEEe-cChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccccee
Q 012750          254 TFVIQG-FGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL  331 (457)
Q Consensus       254 ~vaIqG-fGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIl  331 (457)
                      ||+|.| .|.+|+.+++.+.+ .+.++++..|..-        ++.                        .+...++||+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~--------~~~------------------------~~~~~~~Dvv   48 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD--------PLS------------------------LLTDGNTEVV   48 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC--------CTH------------------------HHHTTTCSEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC--------chh------------------------hhccccCCEE
Confidence            689999 59999999998754 6789998877521        111                        1123478999


Q ss_pred             eccccCCcccc--cccccccceEEEecCCCCCCHHHHHHHH-----hC--CCeEeccccc
Q 012750          332 IPCALGGVLKR--ENAADVKAKFIIEAANHPTDPEADEILS-----KR--GVTILPDIYA  382 (457)
Q Consensus       332 iPaA~~~~It~--~na~~i~akiIvEgAN~p~t~~a~~iL~-----~r--GI~viPD~la  382 (457)
                      |.-+......+  +-+.+.++.+|++- =+ .+++-.+.|+     .+  +|++.|-+..
T Consensus        49 IDFS~p~~~~~~~~~~~~~~~~~ViGT-TG-~~~~~~~~l~~~~~~~~~ipil~apNfSl  106 (135)
T d1yl7a1          49 IDFTHPDVVMGNLEFLIDNGIHAVVGT-TG-FTAERFQQVESWLVAKPNTSVLIAPNFTS  106 (135)
T ss_dssp             EECCCTTTHHHHHHHHHHTTCEEEECC-CC-CCHHHHHHHHHHHHSCTTCEEEECSCCGG
T ss_pred             EEcccHHHHHHHHHHHHhcCCCEEEec-cc-cchhHHHHHHHHHHhcCCCCEEEcCCccH
Confidence            99876654321  23344688888843 32 4555444443     33  3677887743

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.05  E-value=0.13  Score=45.15  Aligned_cols=31  Identities=35%  Similarity=0.552  Sum_probs=27.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|-||..+|..|+++|.+|+ ..|.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~-g~D~   31 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVI-GVDV   31 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECS
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEE-EEeC
Confidence            579999999999999999999999998 4565

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.95  E-value=0.31  Score=36.76  Aligned_cols=40  Identities=40%  Similarity=0.522  Sum_probs=33.8

Q ss_pred             HhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          245 EHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       245 ~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +.+...++.+|.|.| -|.||..+.+++...|++|++++-+
T Consensus        25 ~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s   65 (77)
T d1o8ca2          25 DAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR   65 (77)
T ss_dssp             HTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             hhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECC
Confidence            445556888999976 5999999999999999999988755

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.92  E-value=0.14  Score=45.59  Aligned_cols=35  Identities=29%  Similarity=0.297  Sum_probs=31.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -..++|+|+|.|..|..+|..|.++|.+|+ |.|..
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~-vlE~~   62 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVT-VLEAS   62 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEE-EECSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEE-EEeCC
Confidence            455799999999999999999999999988 88753

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.82  E-value=0.18  Score=45.05  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+||.+.|.|. +.+|..+|+.|+++|++|+ +.|.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~-~~~r   37 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAV-LLDL   37 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            3699999999985 7799999999999999988 5555

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.64  E-value=0.17  Score=45.57  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=31.8

Q ss_pred             CCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEECCC
Q 012750          248 QAIRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       248 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+|+||++.|.|-+   .+|+.+|+.|.+.|++|+ ++|.+
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~-i~~~~   43 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVA-LSYQA   43 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEE-EEeCc
Confidence            57999999999964   499999999999999987 66653

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.63  E-value=0.27  Score=42.03  Aligned_cols=43  Identities=26%  Similarity=0.451  Sum_probs=36.1

Q ss_pred             HHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          243 LAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       243 l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |.+.|...++.+|.|+| -|.||..++++....|++||+++-+.
T Consensus        15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~   58 (167)
T d1tt7a2          15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR   58 (167)
T ss_dssp             HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCH
Confidence            44566667788899998 59999999999999999999887653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.47  E-value=0.35  Score=38.76  Aligned_cols=42  Identities=24%  Similarity=0.163  Sum_probs=33.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHH
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIH  297 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~  297 (457)
                      +++++|+|.|.+|-.+|..|.+.|.+|+ +.+..-.+.   ++|.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vt-lv~~~~~l~---~~d~~   73 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVK-LIHRGAMFL---GLDEE   73 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEE-EECSSSCCT---TCCHH
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEE-EEecccccc---CCCHH
Confidence            3689999999999999999999999988 666654443   36754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.29  E-value=0.36  Score=40.91  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -+|.+|.|+|. |.||..+++++...|++|++++++
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~   61 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR   61 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccccccccccc
Confidence            47899999995 999999999999999999987754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=89.26  E-value=0.18  Score=43.99  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=32.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .++++|+|+|-|..|..+|..|.++|.+|+ |.|.+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vt-l~E~~   75 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVT-LFDAH   75 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEE-EEESS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceE-EEecc
Confidence            678999999999999999999999999998 88764

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.24  E-value=0.34  Score=40.14  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=27.3

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCE
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGK  277 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak  277 (457)
                      +....|++|+|+|.|++|..+|+.+.+.|++
T Consensus        24 ~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          24 DKAPVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             SCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            4456789999999999999999999998874

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.24  E-value=0.3  Score=40.95  Aligned_cols=36  Identities=22%  Similarity=0.165  Sum_probs=31.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.|.+|+|+|.|.+|..++.++...|+++|.++|++
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            478899999999999999999999998776677764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=0.22  Score=45.26  Aligned_cols=50  Identities=20%  Similarity=0.245  Sum_probs=39.4

Q ss_pred             CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750          247 GQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG  307 (457)
Q Consensus       247 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g  307 (457)
                      |..|+||++.|.|- +.+|+.+|+.|.++|++|+ ++|.          +.+.+.+..++.+
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~-i~~r----------~~~~~~~~~~~~~   51 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVV-ICDK----------DESGGRALEQELP   51 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEES----------CHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHHHHhcC
Confidence            45689999999984 8899999999999999998 5665          3456666655543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.18  E-value=0.2  Score=45.65  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=32.0

Q ss_pred             CCCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEECC
Q 012750          247 GQAIRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       247 g~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -.+|+||++.|.|.+   -+|..+|+.|.+.|++|+ +++.
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vv-i~~~   42 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEIL-VGTW   42 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEE-EEEE
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence            357999999999975   499999999999999998 6554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=89.13  E-value=0.19  Score=46.02  Aligned_cols=35  Identities=14%  Similarity=0.258  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+||+++|.| -|.+|+.+|+.|.+.|++|+ ++|.
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vi-i~~r   57 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCV-IASR   57 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEEC
Confidence            58999999998 58999999999999999998 5665

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=89.12  E-value=0.19  Score=43.55  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=28.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .++|+|+|-|-+|..+|..|+++|.+|+ |.|.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~-vier   37 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVH-ILAR   37 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEE-EEeC
Confidence            4689999999999999999999999987 7764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.97  E-value=0.48  Score=37.44  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=34.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHH
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIH  297 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~  297 (457)
                      .++++|+|-|.+|-.+|..|.+.|.+|. +.+....+. | .+|.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vt-lve~~~~il-~-~~d~~   63 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVS-VVEARERIL-P-TYDSE   63 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEE-EECSSSSSS-T-TSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceE-EEeeecccc-c-cccch
Confidence            4799999999999999999999999987 666655444 2 36644

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.96  E-value=0.29  Score=41.58  Aligned_cols=36  Identities=31%  Similarity=0.323  Sum_probs=31.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.|.+|+|.|.|.||..++.++...|+++|.++|.+
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            468899999999999999999999999888788763

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.95  E-value=0.48  Score=39.20  Aligned_cols=39  Identities=28%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +..+.. .|.+|+|.|.|.||..++.++...|++|++ +|.
T Consensus        21 ~~~~~~-~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~-~~~   59 (168)
T d1rjwa2          21 KVTGAK-PGEWVAIYGIGGLGHVAVQYAKAMGLNVVA-VDI   59 (168)
T ss_dssp             HHHTCC-TTCEEEEECCSTTHHHHHHHHHHTTCEEEE-ECS
T ss_pred             HHhCCC-CCCEEEEeecccchhhhhHHHhcCCCeEec-cCC
Confidence            334554 678999999999999999999999999874 454

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=88.89  E-value=0.22  Score=45.32  Aligned_cols=36  Identities=14%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+|+||++.|.| -+.+|+.+|+.|+++|++|+ ++|.
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~-i~~r   38 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVY-TCSR   38 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            368999999998 58899999999999999988 5555

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=88.76  E-value=0.78  Score=38.30  Aligned_cols=108  Identities=10%  Similarity=0.115  Sum_probs=62.1

Q ss_pred             CeEEEEecChHHHH-HHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750          253 LTFVIQGFGNVGSW-AARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV  330 (457)
Q Consensus       253 ~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI  330 (457)
                      .||+|+|+|+.|+. .+..|.+. +..++ ++|.          |.+.+.+..++.+...-|     -+.+++++.++|+
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~-~~d~----------~~~~~~~~~~~~~~~~~~-----~~~~~ll~~~iD~   65 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTR----------NPKVLGTLATRYRVSATC-----TDYRDVLQYGVDA   65 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECS----------CHHHHHHHHHHTTCCCCC-----SSTTGGGGGCCSE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEE-EEEC----------CHHHHHHHHHhccccccc-----ccHHHhcccccce
Confidence            58999999999976 56677655 44554 7765          345565555543321112     1346777778898


Q ss_pred             eeccccCCccccccccc---ccceEEEecCCCCCCHHHHH---HHHhCCCeEe
Q 012750          331 LIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADE---ILSKRGVTIL  377 (457)
Q Consensus       331 liPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a~~---iL~~rGI~vi  377 (457)
                      ++=|.. +..+.+.+..   -+..+++|===.....++.+   ...++|+.+.
T Consensus        66 V~I~tp-~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~  117 (167)
T d1xeaa1          66 VMIHAA-TDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLY  117 (167)
T ss_dssp             EEECSC-GGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             eccccc-ccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            887743 3333333322   35578898511111244544   4567887653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=88.50  E-value=0.38  Score=40.23  Aligned_cols=31  Identities=32%  Similarity=0.466  Sum_probs=25.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGG--KVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  284 (457)
                      .+|+|+|.|+||+++|..|..+|.  .++ +.|.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~Elv-L~D~   34 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIV-LEDI   34 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEE-EEEe
Confidence            479999999999999999988875  566 5564

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.25  Score=43.21  Aligned_cols=32  Identities=25%  Similarity=0.316  Sum_probs=29.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|+|+|.|.+|+..|..+...|+.|+ +.|.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~-l~D~~   36 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVV-LVDQT   36 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEE-EEECC
Confidence            589999999999999999999999998 77763

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=88.43  E-value=0.31  Score=39.76  Aligned_cols=40  Identities=20%  Similarity=0.145  Sum_probs=31.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCC--CEEEEEECCCCeeeCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERG--GKVIAVSDITGAVKNA  291 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~~G~iynp  291 (457)
                      .|+||+|+|.|.+|..+|..|.+.+  .+|+ +-|.+-..+.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vt-lie~~~~~~~~   42 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVT-LIEPNTDYYTC   42 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEE-EECSCSCEECS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEE-EEECCCccccc
Confidence            4899999999999999999998877  4776 55766555544

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.39  E-value=0.19  Score=42.94  Aligned_cols=107  Identities=21%  Similarity=0.258  Sum_probs=64.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCC-Ceec-CCCccc-cccc
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG-GDSM-EPSELL-AHEC  328 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~-~~~i-~~~ell-~~~~  328 (457)
                      .||+|+|+|++|+..++.|... +.+|+||+|.+          .+...+..++.+    ++. .+.. +.++++ +.++
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~----------~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~~~i   67 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRS----------LEKAKAFATANN----YPESTKIHGSYESLLEDPEI   67 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSS----------HHHHHHHHHHTT----CCTTCEEESSHHHHHHCTTC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCC----------ccccccchhccc----cccceeecCcHHHhhhcccc
Confidence            5899999999999999888765 78999999873          445444444322    222 2222 335566 4578


Q ss_pred             ceeeccccCCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCCeEe
Q 012750          329 DVLIPCALGGVLKRENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKRGVTIL  377 (457)
Q Consensus       329 DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~~a~~---iL~~rGI~vi  377 (457)
                      |+++=|+.. ..+.+.+..   -+..+++|-   |+  + .++++   +.+++|+.+.
T Consensus        68 D~v~I~tp~-~~h~~~~~~~l~~g~~v~~EK---P~~~~~~e~~~l~~~~~~~~~~~~  121 (184)
T d1ydwa1          68 DALYVPLPT-SLHVEWAIKAAEKGKHILLEK---PVAMNVTEFDKIVDACEANGVQIM  121 (184)
T ss_dssp             CEEEECCCG-GGHHHHHHHHHTTTCEEEECS---SCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred             ceeeecccc-hhhcchhhhhhhccceeeccc---ccccCHHHHHHHHHHHHhhCCEEE
Confidence            998877543 233332222   356788885   53  3 34443   4556676553

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.38  E-value=0.1  Score=47.06  Aligned_cols=36  Identities=22%  Similarity=0.447  Sum_probs=31.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+.++|+|.|.|.+|+.++..|...|.+-+.+.|.+
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            467899999999999999999999999766677754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.28  E-value=0.56  Score=37.20  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=33.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHH
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIH  297 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~  297 (457)
                      ++|+|+|.|.+|..+|..|.+.|.+|. +.+....+.  ..+|.+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vt-lve~~~~~l--~~~d~~   63 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTH-LFEMFDAPL--PSFDPM   63 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSSSS--TTSCHH
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEE-EEeecchhh--hhcchh
Confidence            689999999999999999999999987 677655443  235644

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=88.04  E-value=0.4  Score=42.56  Aligned_cols=111  Identities=13%  Similarity=0.122  Sum_probs=63.5

Q ss_pred             CCCeEEEEecChHHH-HHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe---ecCCCcccc
Q 012750          251 RDLTFVIQGFGNVGS-WAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD---SMEPSELLA  325 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~-~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~---~i~~~ell~  325 (457)
                      +..||+|+|+|+.|. +.+..+.. .+.+|+||+|.+          .+.+.+..++.+ +   +...   .-+-+++++
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~----------~~~a~~~~~~~~-i---~~~~~~~~~d~~ell~   97 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN----------AEKAKIVAAEYG-V---DPRKIYDYSNFDKIAK   97 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC----------HHHHHHHHHHTT-C---CGGGEECSSSGGGGGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCC----------HHHHHHHHHhhc-c---ccccccccCchhhhcc
Confidence            457899999999996 56666554 488999999873          556665555432 1   1110   113356674


Q ss_pred             -cccceeeccccCCccccccccc---ccceEEEecCCCCCC-HHHHHH---HHhCCCeEe
Q 012750          326 -HECDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPTD-PEADEI---LSKRGVTIL  377 (457)
Q Consensus       326 -~~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t-~~a~~i---L~~rGI~vi  377 (457)
                       .++|+++=|+.. ..+.+-+.+   -+--+++|--= ..| .++.++   -+++|+.+.
T Consensus        98 ~~~iD~V~I~tp~-~~H~~~~~~al~~gk~v~~EKPl-a~~~~e~~~l~~~a~~~~~~~~  155 (221)
T d1h6da1          98 DPKIDAVYIILPN-SLHAEFAIRAFKAGKHVMCEKPM-ATSVADCQRMIDAAKAANKKLM  155 (221)
T ss_dssp             CTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEECSSC-CSSHHHHHHHHHHHHHHTCCEE
T ss_pred             cccceeeeeccch-hhhhhHHHHhhhcchhhhcCCCc-cCCHHHHHHHHHHHHhcCCcEE
Confidence             478888766432 233322222   24578888521 123 345443   445566654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=88.00  E-value=0.22  Score=44.62  Aligned_cols=34  Identities=15%  Similarity=0.458  Sum_probs=29.7

Q ss_pred             CCCCeEEEEec-Ch--HHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGF-GN--VGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGf-Gn--VG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |+||+++|.|. |+  .|..+|+.|.++|++|+ +++.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vi-l~~~   40 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLV-LTGF   40 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEE-EEEC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEE-EEeC
Confidence            79999999995 65  99999999999999988 5554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.45  Score=42.90  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+|.|+.+.|.|. +.+|+.+|+.|++.|++|+ ++|.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~-l~~r   39 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLV-LWDI   39 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            4699999999996 6699999999999999988 6665

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.94  E-value=0.28  Score=45.65  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.4

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      .+|++|.|.| -|-+|+++++.|.++|++|++..+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR   43 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR   43 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC
Confidence            5799999998 499999999999999999997654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.86  E-value=0.28  Score=44.47  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+|+++.|.|- +.+|+.+|+.|++.|++|+ ++|.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~-i~~r   37 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVV-VASR   37 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            689999999985 7799999999999999988 6665

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=87.83  E-value=0.26  Score=44.75  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+||+|.|.|. +-+|..+|+.|+++|++|+.+++.
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~   38 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3689999999985 679999999999999999877665

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=87.82  E-value=0.2  Score=43.41  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=29.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|+|+|-|..|..+|..|.++|.+|+ |.|.+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~-vlE~~   32 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAV-LLESS   32 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEE-EECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEE-EEecC
Confidence            579999999999999999999999987 88763

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.63  E-value=0.21  Score=43.29  Aligned_cols=33  Identities=15%  Similarity=0.437  Sum_probs=29.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  285 (457)
                      .||+|-|||..|+.+++.|.+. ...||+|.|..
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~   36 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTK   36 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCC
Confidence            5899999999999999988764 58999999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=87.52  E-value=0.38  Score=41.88  Aligned_cols=27  Identities=22%  Similarity=0.270  Sum_probs=25.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEE
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVI  279 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVV  279 (457)
                      ++|+|.|.|+.|..+|..|.+.|.+|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~   34 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVC   34 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEE
Confidence            479999999999999999999998876

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=87.47  E-value=0.31  Score=44.27  Aligned_cols=35  Identities=14%  Similarity=0.156  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+||+++|.|- +.+|+.+|+.|.++|++|+ ++|.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~-~~~r   40 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVY-TCSR   40 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            689999999985 6799999999999999988 5665

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.61  Score=39.10  Aligned_cols=122  Identities=16%  Similarity=0.211  Sum_probs=65.4

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC--cccCCCCeecC
Q 012750          243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGS--LKDFDGGDSME  319 (457)
Q Consensus       243 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~--~~~~~~~~~i~  319 (457)
                      +++.+.. .|.+|+|+|.|.+|..++.++...|+ +|+ ++|.+          .+.+ +..++.|.  +..+.......
T Consensus        19 ~~~~~~~-~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi-~~d~~----------~~rl-~~a~~~Ga~~~~~~~~~~~~~   85 (171)
T d1pl8a2          19 CRRGGVT-LGHKVLVCGAGPIGMVTLLVAKAMGAAQVV-VTDLS----------ATRL-SKAKEIGADLVLQISKESPQE   85 (171)
T ss_dssp             HHHHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCSEEE-EEESC----------HHHH-HHHHHTTCSEEEECSSCCHHH
T ss_pred             HHHhCCC-CCCEEEEECCCccHHHHHHHHHHcCCceEE-eccCC----------HHHH-HHHHHhCCccccccccccccc
Confidence            3444443 57899999999999999999999999 676 56653          2333 33333221  00110000000


Q ss_pred             CCcc----cccccceeeccccCCccccc--ccccccceEEEecCCCC-CCHHHHHHHHhCCCeEec
Q 012750          320 PSEL----LAHECDVLIPCALGGVLKRE--NAADVKAKFIIEAANHP-TDPEADEILSKRGVTILP  378 (457)
Q Consensus       320 ~~el----l~~~~DIliPaA~~~~It~~--na~~i~akiIvEgAN~p-~t~~a~~iL~~rGI~viP  378 (457)
                      ..+.    ....+|+.+.|......-+.  +.-+-..+++.=|-... .+-... .+..|++.+..
T Consensus        86 ~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~-~~~~k~l~i~G  150 (171)
T d1pl8a2          86 IARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLL-HAAIREVDIKG  150 (171)
T ss_dssp             HHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHH-HHHHTTCEEEE
T ss_pred             ccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHH-HHHHCCcEEEE
Confidence            0001    12368999999754322121  22234567777665433 332223 34557887763

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=87.36  E-value=0.24  Score=44.64  Aligned_cols=35  Identities=23%  Similarity=0.312  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+|+++.|.| -+.+|+.+|+.|++.|++|+ ++|.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv-~~~r   36 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVI-GTAT   36 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeC
Confidence            58999999988 57899999999999999998 5665

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=87.31  E-value=0.32  Score=44.28  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+||++.|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r   37 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVV-LADV   37 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            589999999985 6799999999999999987 6665

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.16  E-value=1  Score=38.36  Aligned_cols=114  Identities=22%  Similarity=0.314  Sum_probs=64.8

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHHCCCE-EEEEECCCCeeeCCCCCCHHHHHHhHhhcCC--cccCCCCeecC-CCccccc
Q 012750          252 DLTFVIQG-FGNVGSWAARLIHERGGK-VIAVSDITGAVKNADGIDIHKLLAHKDKTGS--LKDFDGGDSME-PSELLAH  326 (457)
Q Consensus       252 g~~vaIqG-fGnVG~~~a~~L~~~Gak-VVaVsD~~G~iynp~GLDi~~L~~~~~~~g~--~~~~~~~~~i~-~~ell~~  326 (457)
                      +.+|.|+| .|.||+.++++....|++ |++++++           .+...+..++.|.  +-+|....... -.++-..
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-----------~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~   99 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-----------QEKCLFLTSELGFDAAVNYKTGNVAEQLREACPG   99 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-----------HHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTT
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccch-----------HHHHhhhhhcccceEEeeccchhHHHHHHHHhcc
Confidence            47899999 599999999999889985 5555555           2333334433332  22221111000 0011133


Q ss_pred             ccceeeccccCCcccccccccc--cceEEEecC----------CCCCCHHHHHHHHhCCCeEe
Q 012750          327 ECDVLIPCALGGVLKRENAADV--KAKFIIEAA----------NHPTDPEADEILSKRGVTIL  377 (457)
Q Consensus       327 ~~DIliPaA~~~~It~~na~~i--~akiIvEgA----------N~p~t~~a~~iL~~rGI~vi  377 (457)
                      .+|+++.|..+.. ...+.+.+  ..++|.=|+          ..+..+....++..|++.+-
T Consensus       100 GvDvv~D~vGg~~-~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~~  161 (187)
T d1vj1a2         100 GVDVYFDNVGGDI-SNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRE  161 (187)
T ss_dssp             CEEEEEESSCHHH-HHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEEE
T ss_pred             CceEEEecCCchh-HHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEEE
Confidence            6999999976433 33444444  557776653          22344555667888888753

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.14  E-value=0.36  Score=41.55  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=29.5

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          251 RDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       251 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      ..+||+|.| -|.+|+++++.|.++|.+|++++.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R   35 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR   35 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEc
Confidence            457899999 699999999999999999998874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.06  E-value=0.75  Score=38.61  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=31.1

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -+|.+|.|.| .|.||..+++++...|++|++++++
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEEeccccccccccccccccCccccccccc
Confidence            3688999999 4999999999999999999987765

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.03  E-value=0.35  Score=41.98  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +..||+|+|.|--|..+|..|.++|.+|+ |.+.+
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~-VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVT-LLEAR   37 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEE-EEeCC
Confidence            45689999999999999999999999987 77653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.02  E-value=0.89  Score=35.72  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=34.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHH
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIH  297 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~  297 (457)
                      .++++|+|.|.+|..+|..|.+.|.+|. +.+....+.  .++|.+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vt-lve~~~~il--~~~d~~   64 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVT-ILEGAGEIL--SGFEKQ   64 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSSSSS--TTSCHH
T ss_pred             CCeEEEECCCccceeeeeeecccccEEE-EEEecceec--ccccch
Confidence            4799999999999999999999999988 555544443  246754

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.98  E-value=0.35  Score=43.08  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .|+||++.|.|- +.+|+.+|+.|.+.|++|+ +.|.
T Consensus         1 gLkgK~~lVTGas~GIG~aia~~l~~~Ga~V~-~~~r   36 (234)
T d1o5ia_           1 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVT-ICAR   36 (234)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            379999999985 7799999999999999988 5555

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.91  E-value=0.4  Score=42.35  Aligned_cols=55  Identities=20%  Similarity=0.264  Sum_probs=39.0

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHH--------------------HCCCEEEEEECCCCeeeCCCCCCHHHHHHhH
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIH--------------------ERGGKVIAVSDITGAVKNADGIDIHKLLAHK  303 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~--------------------~~GakVVaVsD~~G~iynp~GLDi~~L~~~~  303 (457)
                      ..++.|++|+|+|-|||+..+|+.|.                    +.|++=|.+.-.+|-.--  -+...++.+..
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~--~ft~~Elre~~  108 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQA--AFTTLELRELA  108 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGC--CCCHHHHHHGG
T ss_pred             CccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhC--CCChhhhhhhc
Confidence            34578999999999999999999887                    568776667766653322  24455555543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=86.85  E-value=0.8  Score=37.95  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=26.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGG--KVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~  285 (457)
                      .+|+|+|.|+||+.+|..|..++.  .++ +.|.+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~-L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELV-LIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEE-EECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEE-EEecc
Confidence            479999999999999999988875  565 66754

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.83  E-value=0.37  Score=45.35  Aligned_cols=131  Identities=18%  Similarity=0.128  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC-------EEEEEECCCCeeeCCCC--CCHH
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER----GG-------KVIAVSDITGAVKNADG--IDIH  297 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga-------kVVaVsD~~G~iynp~G--LDi~  297 (457)
                      ||-=+..++-.+++..|++|+..||++.|.|.-|-.++++|...    |.       +|+ +.|++|-+++...  ++..
T Consensus         4 Ta~V~lAglinAlki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~-lvD~~Glv~~~r~~~~~~~   82 (294)
T d1pj3a1           4 TAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW-MFDKYGLLVKGRKAKIDSY   82 (294)
T ss_dssp             HHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE-EEETTEECBTTCSSCCCTT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEE-EEeCCCCccCCCCcccHHH
Confidence            44455567778888889999999999999999999999987643    43       466 8999999987532  3321


Q ss_pred             HHHHhHhhcCCcccCCCCeecCCCccc-ccccceeecccc-CCcccccccccc----cceEEEecCCCCC---CHHHHHH
Q 012750          298 KLLAHKDKTGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADV----KAKFIIEAANHPT---DPEADEI  368 (457)
Q Consensus       298 ~L~~~~~~~g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~p~---t~~a~~i  368 (457)
                        .+.+...     -+....-+-.+.. ..+.|+||=++. ++.+|++-++.+    +-.||---+| |+   .+.+++.
T Consensus        83 --k~~~a~~-----~~~~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSN-Pt~~~e~~~~~a  154 (294)
T d1pj3a1          83 --QEPFTHS-----APESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSN-PTAQAECTAEEA  154 (294)
T ss_dssp             --TGGGCBC-----CCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCS-SGGGCSCCHHHH
T ss_pred             --HHHhhcc-----ccccchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccC-CCCcCCcCHHHH
Confidence              1111100     0000000112222 248899988884 578898876543    4468888888 53   2334555


Q ss_pred             HH
Q 012750          369 LS  370 (457)
Q Consensus       369 L~  370 (457)
                      ..
T Consensus       155 ~~  156 (294)
T d1pj3a1         155 YT  156 (294)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.82  E-value=0.61  Score=39.73  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~  284 (457)
                      -+|.+|+|+|.|.||..++.++...|+ +|+ ++|.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi-~vd~   62 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRII-GIDL   62 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEE-EECS
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEE-EecC
Confidence            478999999999999999999999996 677 5665

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=86.67  E-value=0.36  Score=44.20  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .|+|+++.|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~-i~~r   37 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVA-VLDK   37 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            489999999984 8999999999999999998 5654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=86.67  E-value=0.58  Score=36.86  Aligned_cols=44  Identities=16%  Similarity=0.031  Sum_probs=34.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCH
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDI  296 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi  296 (457)
                      ..+++|+|+|.|.+|..+|..|.+.|.+|. +.+..-.+.  .++|.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt-~i~~~~~~l--~~~d~   63 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTV-MLVRTEPLK--LIKDN   63 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCTTT--TCCSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhhe-Eeeccchhh--ccccc
Confidence            467999999999999999999999999987 555543333  25664

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=86.59  E-value=0.47  Score=42.20  Aligned_cols=33  Identities=15%  Similarity=0.156  Sum_probs=28.7

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750          251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       251 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +.+||.|.|. |.+|+++++.|.++|.+|++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R   35 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFR   35 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            3467999994 99999999999999999997754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.58  E-value=0.81  Score=36.38  Aligned_cols=48  Identities=13%  Similarity=0.089  Sum_probs=35.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHH
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIH  297 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~  297 (457)
                      ..+-..++++|+|.|.+|-.+|..|.+.|.+|.=+- ...-+. | ++|.+
T Consensus        17 ~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~-~~~~ll-~-~~d~e   64 (119)
T d3lada2          17 DFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLE-AMDKFL-P-AVDEQ   64 (119)
T ss_dssp             SCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEE-SSSSSS-T-TSCHH
T ss_pred             CcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEE-eecccC-C-cccch
Confidence            444445899999999999999999999999988444 333232 2 45655

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.55  E-value=0.41  Score=40.76  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -+|.+|.|+|- |.||..++++....|++|++++.+
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~   63 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS   63 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCC
Confidence            36899999987 889999999999999999988754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=86.50  E-value=0.37  Score=43.65  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .|+||+++|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~r   37 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIA-LLDM   37 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            489999999985 7799999999999999987 6665

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.22  E-value=1.7  Score=35.95  Aligned_cols=120  Identities=13%  Similarity=0.176  Sum_probs=63.9

Q ss_pred             HHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC--cccCCCCeecCC
Q 012750          244 AEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS--LKDFDGGDSMEP  320 (457)
Q Consensus       244 ~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~--~~~~~~~~~i~~  320 (457)
                      ++.+.. .|.+|+|.|. |.+|..++.++...|.+.|-++|.+          .+.+. ..++.|.  +-++......  
T Consensus        21 ~~~~~~-~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~----------~~~~~-~~~~~Ga~~~i~~~~~~~~--   86 (170)
T d1jvba2          21 RKASLD-PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR----------EEAVE-AAKRAGADYVINASMQDPL--   86 (170)
T ss_dssp             HHTTCC-TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS----------HHHHH-HHHHHTCSEEEETTTSCHH--
T ss_pred             HHhCCC-CCCEEEEEeccccceeeeeecccccccccccccccc----------hhhHH-HHHHcCCceeeccCCcCHH--
Confidence            333433 6789999995 9999999999998896444466653          22322 2222221  1111110000  


Q ss_pred             Cccc----ccccceeeccccCCccccccccc--ccceEEEecCCCC-CCHHHHHHHHhCCCeEec
Q 012750          321 SELL----AHECDVLIPCALGGVLKRENAAD--VKAKFIIEAANHP-TDPEADEILSKRGVTILP  378 (457)
Q Consensus       321 ~ell----~~~~DIliPaA~~~~It~~na~~--i~akiIvEgAN~p-~t~~a~~iL~~rGI~viP  378 (457)
                      +++.    ...+|+++.|+.....-+.....  -..++|.=|.... .+-....+ ..|++.+..
T Consensus        87 ~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~-~~k~i~i~G  150 (170)
T d1jvba2          87 AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLI-TLSEIQFVG  150 (170)
T ss_dssp             HHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHH-HHHTCEEEE
T ss_pred             HHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHH-HhCCcEEEE
Confidence            1111    23589999998654333333333  3557776665432 33223333 446677653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.18  E-value=0.28  Score=44.38  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++||++.|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~-i~~r   41 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVA-VIYR   41 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEE-EEES
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            4689999999985 6799999999999999988 5555

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.09  E-value=0.33  Score=43.65  Aligned_cols=34  Identities=12%  Similarity=0.202  Sum_probs=30.1

Q ss_pred             CCCCeEEEEec-C--hHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGF-G--NVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGf-G--nVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |+||++.|.|- |  -+|..+|+.|.++|++|+ ++|.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~-i~~r   39 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLA-FTYL   39 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEE-EEES
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            79999999996 5  499999999999999998 6665

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.08  E-value=0.52  Score=40.54  Aligned_cols=42  Identities=40%  Similarity=0.529  Sum_probs=34.7

Q ss_pred             HHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          243 LAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       243 l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +.+.|...++.+|.|+| .|.||..++++....|++||+++.+
T Consensus        23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~   65 (177)
T d1o89a2          23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR   65 (177)
T ss_dssp             HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecc
Confidence            34556666777898876 5999999999999999999988765

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=85.80  E-value=0.33  Score=43.29  Aligned_cols=35  Identities=11%  Similarity=0.287  Sum_probs=29.9

Q ss_pred             CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+||++.|.|.+   ..|+.+|+.|.++|++|+ +.+.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~-i~~~~   40 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQN   40 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEE-EEeCC
Confidence            799999999864   488999999999999988 66653

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.79  E-value=0.89  Score=36.42  Aligned_cols=29  Identities=17%  Similarity=0.272  Sum_probs=26.1

Q ss_pred             CeEEEEec----ChHHHHHHHHHHHCCCEEEEE
Q 012750          253 LTFVIQGF----GNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       253 ~~vaIqGf----GnVG~~~a~~L~~~GakVVaV  281 (457)
                      ++|+|+|.    ++.|..+.+.|.+.|++|+.|
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pV   34 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPV   34 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEE
Confidence            58999994    889999999999999999876

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=85.78  E-value=0.86  Score=36.27  Aligned_cols=43  Identities=14%  Similarity=0.068  Sum_probs=34.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHH
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIH  297 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~  297 (457)
                      .++|+|+|.|.+|-.+|..|.+.|.+|. +.+....+.  .++|.+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vt-lv~~~~~il--~~~d~~   64 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSY-IFARGNRIL--RKFDES   64 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEE-EECSSSSSC--TTSCHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccce-eeehhcccc--ccccHH
Confidence            4799999999999999999999999988 666654444  246643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=85.62  E-value=0.4  Score=44.17  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=30.3

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      .+++||.|.| -|-+|+++++.|.++|.+|+++.-
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r   40 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSL   40 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            4789999999 599999999999999999997753

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.54  E-value=0.45  Score=42.31  Aligned_cols=55  Identities=24%  Similarity=0.212  Sum_probs=38.3

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHH--------------------CCCEEEEEECCCCeeeCCCCCCHHHHHHhH
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHE--------------------RGGKVIAVSDITGAVKNADGIDIHKLLAHK  303 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~--------------------~GakVVaVsD~~G~iynp~GLDi~~L~~~~  303 (457)
                      ..++.|++|+|+|-|||+..+|+.|.+                    .|++=|-+...+|-.--  -+...+|.+..
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~--~ft~~Elre~~  108 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQV--AFTIKELREMI  108 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGC--CCCHHHHHHHH
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhC--CCCchhhhccc
Confidence            345789999999999999999999987                    47766667766653211  13345555443

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.46  E-value=0.33  Score=43.67  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=30.3

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |+||++.|.| -+.+|+.+|+.|++.|++|+ ++|.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi-~~~r   38 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVI-ATDI   38 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeC
Confidence            8999999988 59999999999999999999 4554

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.46  E-value=0.94  Score=36.19  Aligned_cols=43  Identities=23%  Similarity=0.261  Sum_probs=34.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHH
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIH  297 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~  297 (457)
                      .++++|+|.|.+|..+|.+|.+.|.+|. |.+....+. | .+|.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vt-ii~~~~~~l-~-~~d~e   65 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVT-VVEFQPQIG-A-SMDGE   65 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSSSS-S-SSCHH
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCccee-EEEeccccc-h-hhhhh
Confidence            3799999999999999999999999997 666654444 3 36644

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=85.36  E-value=0.31  Score=42.23  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=27.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+|+|.|-+|+..|..++..|.+|+ +.|.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~-l~D~   35 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPIL-MKDI   35 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEE-EECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEE-EEEC
Confidence            479999999999999999999999998 6665

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.15  E-value=0.68  Score=38.26  Aligned_cols=31  Identities=29%  Similarity=0.461  Sum_probs=24.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGG--KVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  284 (457)
                      ++|+|+|.|+||+.+|..|..++.  .++ .-|.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~-L~Di   33 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMV-LIDV   33 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEE-EEec
Confidence            579999999999999988877663  554 5554

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=85.11  E-value=0.38  Score=40.05  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=27.2

Q ss_pred             eEEEEecChHHHHHHHHHHHCCC-EEEEEECCC
Q 012750          254 TFVIQGFGNVGSWAARLIHERGG-KVIAVSDIT  285 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~  285 (457)
                      +|+|+|.|..|..+|..|.++|. +|+ |.|.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~-vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLL-ILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEE-EECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEE-EEECC
Confidence            69999999999999999999997 476 87754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.86  E-value=0.28  Score=41.42  Aligned_cols=32  Identities=31%  Similarity=0.453  Sum_probs=25.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCC-EEEEEECC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDI  284 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~  284 (457)
                      ..+|+|+|.|+||+.+|.+|...+. .++ +.|.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~-L~Di   35 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVV-LFDI   35 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEE-EECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEE-EEec
Confidence            3689999999999999988887774 433 5554

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.84  E-value=0.36  Score=43.89  Aligned_cols=35  Identities=11%  Similarity=0.146  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +|+||++.|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~-~~~r   40 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIH-TCAR   40 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            689999999985 7799999999999999988 5555

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.76  E-value=0.47  Score=42.77  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .|+||++.|.|- +.+|+.+|+.|+++|++|+ ++|.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~-~~~r   38 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVV-FGDI   38 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            389999999985 7899999999999999988 5665

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.72  E-value=1  Score=39.05  Aligned_cols=37  Identities=32%  Similarity=0.380  Sum_probs=29.6

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      +.. .|.+|+|.|.|.||..++.++...|++.|.++|.
T Consensus        22 ~v~-~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~   58 (195)
T d1kola2          22 GVG-PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL   58 (195)
T ss_dssp             TCC-TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCC-CCCEEEEECcCHHHHHHHHHHHhhcccceeeecc
Confidence            444 6889999999999999999988888844446665

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=0.71  Score=41.67  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++|+++.|.|. +.+|..+|+.|.+.|++|+ ++|.
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv-~~~r   42 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVV-GCAR   42 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            89999999985 8899999999999999998 4555

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=84.70  E-value=0.41  Score=42.38  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=28.4

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .|+|+|-|-+|..+|..|.++|.+|+ |-|..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~-vlE~~   36 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTA-LFESG   36 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEE-EECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEE-EEeCC
Confidence            59999999999999999999999998 88863

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=84.70  E-value=0.49  Score=42.94  Aligned_cols=35  Identities=34%  Similarity=0.627  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .|+||+++|.| .+.+|+.+|+.|.+.|++|+ ++|.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~-i~~r   38 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVV-IADI   38 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            38999999998 47799999999999999988 6665

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.69  E-value=0.36  Score=43.86  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=32.1

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+|+||++.|.| -+.+|+.+|+.|.++|++|+ ++|.+
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vv-i~~~~   51 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVI-VNYAN   51 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeCC
Confidence            359999999998 58999999999999999998 66543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=84.67  E-value=0.18  Score=41.18  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             CCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCC
Q 012750          252 DLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDIT  285 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~  285 (457)
                      ..+|+|.|.|+.|+.+++.+. +.+++++|+.|.+
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd   37 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVD   37 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESC
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCc
Confidence            358999999999999998764 4689999999874

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.64  E-value=0.55  Score=42.12  Aligned_cols=35  Identities=23%  Similarity=0.500  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .|+||++.|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~-~~~r   37 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLV-ACDI   37 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            479999999985 7799999999999999988 5665

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.60  E-value=0.42  Score=39.73  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.|+|+|-|--|..+|..|+++|.+|+ |.|..
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~~V~-vlE~~   37 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGKKVL-HIDKQ   37 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEE-EEcCC
Confidence            358999999999999999999999987 88875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=84.37  E-value=0.85  Score=38.70  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=30.4

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCC
Q 012750          247 GQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDIT  285 (457)
Q Consensus       247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~  285 (457)
                      +.. +|.+|+|.|.|.||..++.++...|+ +|+ ++|++
T Consensus        24 ~~~-~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi-~~d~~   61 (174)
T d1jqba2          24 DIE-MGSSVVVIGIGAVGLMGIAGAKLRGAGRII-GVGSR   61 (174)
T ss_dssp             TCC-TTCCEEEECCSHHHHHHHHHHHTTTCSCEE-EECCC
T ss_pred             CCC-CCCEEEEEcCCcchhhhhhhhhcccccccc-cccch
Confidence            444 68899999999999999999999998 565 66663

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.34  E-value=0.48  Score=42.69  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=30.6

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      ++|+||++.|.| .+.+|..+|+.|+++|++|+-..+
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~   38 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYG   38 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            468999999988 477999999999999999983333

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=84.30  E-value=0.5  Score=42.61  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+||++.|.| -+.+|+.+|+.|++.|++|+ ++|.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~-~~~~~   38 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVA-LCDLR   38 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            7999999998 58899999999999999987 66663

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.22  E-value=0.42  Score=43.18  Aligned_cols=46  Identities=22%  Similarity=0.305  Sum_probs=37.0

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK  305 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~  305 (457)
                      .|+||++.|.|- +.+|+.+|+.|.+.|++|+ ++|.          +.+++.+..++
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r----------~~~~l~~~~~~   48 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVA-IADI----------NLEAARATAAE   48 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEE-EEES----------CHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHHHHH
Confidence            479999999985 8899999999999999988 6665          34566665554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=84.10  E-value=1  Score=37.67  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=28.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~  284 (457)
                      -+|.+|+|+|.|.+|..++.++...|+ +|+ ++|+
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi-~~~~   61 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARII-GVDI   61 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEE-EECS
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEE-eecC
Confidence            478999999999999999999999986 555 5665

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.00  E-value=0.39  Score=41.28  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=25.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      ++|+|+|.|-||..+|..|+ +|.+|++ .|.+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g-~Din   31 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTI-VDIL   31 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEE-ECSC
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEE-EECC
Confidence            57999999999999997775 7999995 4653

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=83.99  E-value=0.42  Score=45.20  Aligned_cols=128  Identities=19%  Similarity=0.255  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC-------EEEEEECCCCeeeCCCC-CCHHH
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER----GG-------KVIAVSDITGAVKNADG-IDIHK  298 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga-------kVVaVsD~~G~iynp~G-LDi~~  298 (457)
                      ||-=+..++..+++..|.+|+..||+|.|.|.-|-.++++|...    |.       +|+ +.|++|-+++... ++.  
T Consensus         4 Ta~V~lAglinAlki~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~-~vD~~Glv~~~r~d~~~--   80 (308)
T d1o0sa1           4 TASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY-LMDIDGLVTKNRKEMNP--   80 (308)
T ss_dssp             HHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE-EEETTEECBTTCSSCCG--
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEE-EEeCCCCccCCCcccCH--
Confidence            45455667778888889999999999999999999999988643    42       455 8999999987542 321  


Q ss_pred             HHHhHhhcCCcc-cCCCCeecCCCccc-ccccceeecccc-CCcccccccccc----cceEEEecCCCCC---CHHHHHH
Q 012750          299 LLAHKDKTGSLK-DFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADV----KAKFIIEAANHPT---DPEADEI  368 (457)
Q Consensus       299 L~~~~~~~g~~~-~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~p~---t~~a~~i  368 (457)
                         ++..   +. +....  -+-.++. ..+.++|+=++. .+.+|++-++.+    +=.||---+| |+   .+.+++.
T Consensus        81 ---~k~~---~a~~~~~~--~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLSN-Ptp~~E~~~eda  151 (308)
T d1o0sa1          81 ---RHVQ---FAKDMPET--TSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSN-PTSKAECTAEEA  151 (308)
T ss_dssp             ---GGTT---TCBSSCCC--CCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCS-SGGGCSSCHHHH
T ss_pred             ---HHHH---HHHhcccC--CcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEccC-CCCCCCCCHHHH
Confidence               1111   11 00000  0111222 346778877764 688888877554    4468888888 53   3345566


Q ss_pred             HH
Q 012750          369 LS  370 (457)
Q Consensus       369 L~  370 (457)
                      ++
T Consensus       152 ~~  153 (308)
T d1o0sa1         152 YT  153 (308)
T ss_dssp             HH
T ss_pred             Hh
Confidence            55

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=83.98  E-value=0.5  Score=38.98  Aligned_cols=104  Identities=14%  Similarity=0.213  Sum_probs=59.1

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh--cCCcccCCCCeecCCCcccc----cc
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK--TGSLKDFDGGDSMEPSELLA----HE  327 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~--~g~~~~~~~~~~i~~~ell~----~~  327 (457)
                      .++|.|+|.+|+.+++.|.++|..|+.| |.+          .+...+..++  ...+.-+. +.. +..+.|.    .+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vI-d~d----------~~~~~~~~~~~~~~~~~vi~-Gd~-~d~~~L~~a~i~~   71 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVI-SNL----------PEDDIKQLEQRLGDNADVIP-GDS-NDSSVLKKAGIDR   71 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEE-ECC----------CHHHHHHHHHHHCTTCEEEE-SCT-TSHHHHHHHTTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEE-ecc----------chhHHHHHHHhhcCCcEEEE-ccC-cchHHHHHhcccc
Confidence            6999999999999999999999998844 331          2222211111  00110000 111 1223331    27


Q ss_pred             cceeeccccCCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCC
Q 012750          328 CDVLIPCALGGVLK---RENAADV--KAKFIIEAANHPTDPEADEILSKRGV  374 (457)
Q Consensus       328 ~DIliPaA~~~~It---~~na~~i--~akiIvEgAN~p~t~~a~~iL~~rGI  374 (457)
                      ||.+|-+.-.+..|   ...+.++  .+++|+...    +++-.+.|++-|+
T Consensus        72 a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~----~~~~~~~l~~~Ga  119 (153)
T d1id1a_          72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVS----DSKNLNKIKMVHP  119 (153)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECS----SGGGHHHHHTTCC
T ss_pred             CCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEc----CHHHHHHHHHCCC
Confidence            88888775432222   1223333  558888753    4566788999887

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.98  E-value=1.3  Score=35.41  Aligned_cols=43  Identities=21%  Similarity=0.120  Sum_probs=34.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHH
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIH  297 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~  297 (457)
                      .++++|+|.|.+|..+|..|.+.|.+|+ +.+....+. | ++|.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vt-lv~~~~~~l-~-~~d~~   64 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTS-LMIRHDKVL-R-SFDSM   64 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSSSC-T-TSCHH
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEE-EEeeccccc-c-chhhH
Confidence            3799999999999999999999999987 666654443 2 36655

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=83.80  E-value=0.72  Score=39.26  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=28.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  284 (457)
                      +...+|+|+|.|+||+.+|..|...|.  .++ +.|.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~Elv-LiD~   53 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELA-LVDV   53 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEE-EEEe
Confidence            567899999999999999999998886  666 5565

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.78  E-value=0.45  Score=44.84  Aligned_cols=30  Identities=20%  Similarity=0.175  Sum_probs=27.0

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750          252 DLTFVIQG-FGNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       252 g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  281 (457)
                      |+||.|.| -|-+|+++++.|+++|++|+++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~i   31 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIV   31 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence            78999998 5999999999999999999965

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.71  E-value=0.5  Score=39.73  Aligned_cols=34  Identities=12%  Similarity=0.026  Sum_probs=28.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -+++|+|+|-||+|..+|..+.+.|++.|-+.-.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~r   77 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFR   77 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEe
Confidence            4668999999999999999999999987666533

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.56  E-value=0.64  Score=38.04  Aligned_cols=81  Identities=21%  Similarity=0.396  Sum_probs=53.0

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccccee
Q 012750          253 LTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL  331 (457)
Q Consensus       253 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIl  331 (457)
                      ++|+|.|+ |.+|+.+++.+.+.+..+++..|.+.                                  .+.+ .++||+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~----------------------------------~~~~-~~~DVv   45 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG----------------------------------VEEL-DSPDVV   45 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE----------------------------------EEEC-SCCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc----------------------------------HHHh-ccCCEE
Confidence            47999996 99999999999999999987654321                                  0111 257899


Q ss_pred             eccccCCcccc--cccccccceEEEecCCCCCCHHHHHHHH
Q 012750          332 IPCALGGVLKR--ENAADVKAKFIIEAANHPTDPEADEILS  370 (457)
Q Consensus       332 iPaA~~~~It~--~na~~i~akiIvEgAN~p~t~~a~~iL~  370 (457)
                      |.-+......+  +.+.+-+..+|++=..  .+++-.+.|+
T Consensus        46 IDFS~p~~~~~~l~~~~~~~~p~ViGTTG--~~~~~~~~i~   84 (128)
T d1vm6a3          46 IDFSSPEALPKTVDLCKKYRAGLVLGTTA--LKEEHLQMLR   84 (128)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCEEEECCCS--CCHHHHHHHH
T ss_pred             EEecCHHHHHHHHHHHHhcCCCEEEEcCC--CCHHHHHHHH
Confidence            88766543321  2334457788885432  4555555554

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.51  E-value=0.49  Score=43.98  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +.++|+|+|.|--|..+|..|.++|.+|+ |.|.+
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~-viEk~   34 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVH-IIDQR   34 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEE-EEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEE-EEECC
Confidence            45899999999999999999999999987 77653

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=83.44  E-value=0.58  Score=42.36  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |+||++.|.|- +.+|+.+|+.|++.|++|+ ++|.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~-i~~r   36 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLS-LVDV   36 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            78999999985 7899999999999999987 6765

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=83.40  E-value=0.41  Score=42.10  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=28.4

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750          252 DLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       252 g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      .+||.|.|. |.+|+++++.|.+.|.+|++++-
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R   35 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVR   35 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence            478999995 99999999999999999997663

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=83.39  E-value=0.48  Score=43.84  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=29.7

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          251 RDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       251 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +.++|+|.| -|.+|+++++.|.++|++|++++-
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R   35 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVH   35 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEEC
Confidence            468999999 599999999999999999998873

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.30  E-value=0.57  Score=43.43  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |+|++++|.|. +.+|+.+|+.|++.|++|+ ++|.
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vv-i~~r   44 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVV-IASR   44 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            89999999985 7799999999999999988 6665

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=83.21  E-value=0.48  Score=42.75  Aligned_cols=35  Identities=14%  Similarity=0.345  Sum_probs=30.1

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      |+||++.|.|- +.+|+.+|+.|+++|++|+ ++|.+
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~-~~~r~   37 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIV-LNGFG   37 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EECCS
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            68999999875 7799999999999999988 66653

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.01  E-value=0.57  Score=42.45  Aligned_cols=31  Identities=26%  Similarity=0.486  Sum_probs=27.8

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750          253 LTFVIQG-FGNVGSWAARLIHERGGKVIAVSD  283 (457)
Q Consensus       253 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  283 (457)
                      +||.|.| .|-+|+++++.|.++|++|+++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r   32 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVA   32 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            5899998 599999999999999999998753

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.85  E-value=0.49  Score=42.36  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+++||++.|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~-~~~r   39 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVA-VTHR   39 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            3589999999985 6799999999999999998 4554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.75  E-value=0.44  Score=43.11  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .+|+||++.|.|- +.+|+.+|+.|++.|++|+ ++|.
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~r   43 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVV-VSDI   43 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEE-EEES
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            3589999999985 7899999999999999988 5665

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.59  E-value=0.75  Score=38.33  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=27.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  284 (457)
                      -.+.+|+|+|.|+||+.+|..|..+|.  .|+ ..|.
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~-L~Di   39 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIV-LIDA   39 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEE-EEee
Confidence            357899999999999999999887774  555 5564

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.48  E-value=0.79  Score=39.21  Aligned_cols=42  Identities=10%  Similarity=0.099  Sum_probs=36.2

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeee
Q 012750          248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVK  289 (457)
Q Consensus       248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iy  289 (457)
                      .+++||+|+|+|.|+-|..+|..|.+.+++++-+.-+...+.
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~~~   69 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAV   69 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEE
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccceee
Confidence            358999999999999999999999999999987877655443

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.46  E-value=0.48  Score=43.20  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=30.2

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |+||++.|.|- +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~r   36 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVT-ITGR   36 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            78999999985 7899999999999999988 6665

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.40  E-value=0.54  Score=42.47  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=30.3

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |+||++.|.| .+.+|+.+|+.|.+.|++|+ ++|.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~~   38 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVA-FSDI   38 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            8999999998 47799999999999999987 6665

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=82.39  E-value=0.67  Score=41.61  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .|+||.+.|.|- +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~-~~~~~   38 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIA-IADLV   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            489999999985 7799999999999999988 66653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.35  E-value=0.3  Score=41.42  Aligned_cols=33  Identities=18%  Similarity=0.137  Sum_probs=28.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++++|+|+|-|+.|..+|.+|.+.|.+|+ |-|.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~-iie~   36 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPV-LITG   36 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCE-EECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceE-EEEe
Confidence            45789999999999999999999999987 5553

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=82.33  E-value=0.42  Score=44.99  Aligned_cols=130  Identities=21%  Similarity=0.257  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----C------C-EEEEEECCCCeeeCCCC-CCHHH
Q 012750          231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER----G------G-KVIAVSDITGAVKNADG-IDIHK  298 (457)
Q Consensus       231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----G------a-kVVaVsD~~G~iynp~G-LDi~~  298 (457)
                      ||-=+..++-.+++..|.+|+..||++.|.|.-|-.++++|...    |      . +|+ +.|++|-|++... ++   
T Consensus         4 TaaV~lAglinAlki~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~-l~D~kGlv~~~R~~l~---   79 (298)
T d1gq2a1           4 TASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIW-MVDSKGLIVKGRASLT---   79 (298)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEE-EEETTEECBTTCSSCC---
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEE-EEeCCCcccCCCcccC---
Confidence            44445566777888889999999999999999999999988632    3      2 455 8999999997653 22   


Q ss_pred             HHHhHhhcCCcccCCCCeecCCCccc-ccccceeecccc-CCcccccccccc----cceEEEecCCCC--CCHHHHHHHH
Q 012750          299 LLAHKDKTGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADV----KAKFIIEAANHP--TDPEADEILS  370 (457)
Q Consensus       299 L~~~~~~~g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~p--~t~~a~~iL~  370 (457)
                        .++..   +... ..+.-+..++. ..+.++|+=++. ++.+|++-++.+    +=.||---+|--  ..+.+++.+.
T Consensus        80 --~~k~~---~a~~-~~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~  153 (298)
T d1gq2a1          80 --PEKEH---FAHE-HCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYK  153 (298)
T ss_dssp             --TTGGG---GCBS-CCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHH
T ss_pred             --HHHHH---HHHH-hhhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhh
Confidence              11111   1000 00000112333 346778877765 789999866543    346888888832  2344556554

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.93  E-value=2  Score=35.36  Aligned_cols=101  Identities=17%  Similarity=0.145  Sum_probs=56.9

Q ss_pred             CCCeEEEEec----ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750          251 RDLTFVIQGF----GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH  326 (457)
Q Consensus       251 ~g~~vaIqGf----GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~  326 (457)
                      +-++|+|+|.    +..|..+++.|.+.|++|+.|        ||..             +.+.+.+-...+  .+ +..
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pV--------nP~~-------------~~i~G~~~~~sl--~d-lp~   73 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPV--------NPKY-------------EEVLGRKCYPSV--LD-IPD   73 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--------CTTC-------------SEETTEECBSSG--GG-CSS
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEE--------CCcc-------------cccCCCcccccc--cc-cCc
Confidence            3478999995    789999999999999998866        4432             122221100001  11 122


Q ss_pred             cccee---eccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEe
Q 012750          327 ECDVL---IPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTIL  377 (457)
Q Consensus       327 ~~DIl---iPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~vi  377 (457)
                      +.|+.   +|....-.+-++ +....+|.|.=. -+-.++++.+.++++|+.++
T Consensus        74 ~iD~v~i~vp~~~~~~~~~e-~~~~g~k~v~~~-~G~~~ee~~~~a~~~gi~vi  125 (139)
T d2d59a1          74 KIEVVDLFVKPKLTMEYVEQ-AIKKGAKVVWFQ-YNTYNREASKKADEAGLIIV  125 (139)
T ss_dssp             CCSEEEECSCHHHHHHHHHH-HHHHTCSEEEEC-TTCCCHHHHHHHHHTTCEEE
T ss_pred             cceEEEEEeCHHHHHHHHHH-HHHhCCCEEEEe-ccccCHHHHHHHHHCCCEEE
Confidence            34444   444322111111 222344444421 12368999999999999765

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.82  E-value=0.53  Score=42.85  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .|+||++.|.|. +.+|+.+|+.|+++|++|+ ++|.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~-l~~r   37 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVT-ITGR   37 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            489999999884 8899999999999999988 6665

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.79  E-value=0.63  Score=43.24  Aligned_cols=37  Identities=27%  Similarity=0.405  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      .+|+|+++.|.|. +.+|+.+|+.|+++|++|+ ++|.+
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vv-i~d~~   40 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVV-VNDLG   40 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EECCC
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeCC
Confidence            3589999999985 7799999999999999988 78764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.68  E-value=0.47  Score=40.42  Aligned_cols=32  Identities=19%  Similarity=0.090  Sum_probs=28.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      .++|+|+|-|+.|..+|.+|.+.|.+++ |.|.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~-vie~   36 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPL-LFEG   36 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCE-EECC
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEE-EEEe
Confidence            4689999999999999999999999988 6663

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.62  E-value=1  Score=35.94  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=35.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHH
Q 012750          252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHK  298 (457)
Q Consensus       252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~  298 (457)
                      .++++|+|.|.+|-.+|..|.+.|.+|. |......+. | ++|.+.
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vt-vi~~~~~~l-~-~~d~~~   68 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVT-VVEFASEIV-P-TMDAEI   68 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEE-EECSSSSSS-T-TSCHHH
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEE-EEEEccccC-c-hhhhcc
Confidence            4799999999999999999999999998 666655554 3 467543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=81.55  E-value=1.5  Score=36.43  Aligned_cols=36  Identities=31%  Similarity=0.329  Sum_probs=30.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      -.|.+|+|.|.|.+|..++.++...|+..|.++|++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            478899999999999999999998888655567764

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.39  E-value=0.9  Score=38.56  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  284 (457)
                      ++..+|+|+|.|+||+++|..|..+|.  .++ +.|.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elv-L~D~   52 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELA-LVDA   52 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEE-EECS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence            666789999999999999999988775  565 5565

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=81.30  E-value=0.81  Score=40.83  Aligned_cols=34  Identities=21%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |+|+++.|.|. +.+|..+|+.|.++|++|+ +++.
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~-~~~r   37 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLV-AVDR   37 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            79999999985 7799999999999999998 5554

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=81.10  E-value=0.61  Score=38.89  Aligned_cols=33  Identities=12%  Similarity=0.110  Sum_probs=26.5

Q ss_pred             CeEEEEecChHHHH-HHHHHHH-CCCEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSW-AARLIHE-RGGKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~-~a~~L~~-~GakVVaVsD~~  285 (457)
                      .||+|+|+|++|+. .+..|.. .+.+|++|+|.+
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~   36 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPT   36 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEech
Confidence            58999999999975 4666654 478999999875

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.00  E-value=0.82  Score=41.05  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      ++||++.|.|- +.+|+.+|+.|+++|++|+ ++|.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~-i~~r   35 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVA-LVDW   35 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            47999999985 7799999999999999988 6665

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.87  E-value=0.52  Score=42.09  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=28.4

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750          254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT  285 (457)
Q Consensus       254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  285 (457)
                      +|+|+|.|.+|..+|..|.+.|.+|+ |-|.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~-vlE~~   34 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQ   34 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEE-EECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEE-EEeCC
Confidence            69999999999999999999999988 77764

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.82  E-value=0.57  Score=40.94  Aligned_cols=36  Identities=28%  Similarity=0.379  Sum_probs=31.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG  286 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  286 (457)
                      |++++|+|+|||+=|..=|.-|.+.|.+|+ |.=..|
T Consensus        14 ik~k~IaViGYGsQG~AhAlNLrDSG~~V~-VGLr~g   49 (182)
T d1np3a2          14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVT-VGLRSG   49 (182)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEE-EECCTT
T ss_pred             HCCCEEEEEeeCcHhHHHHhhhhhcCCCEE-EEcCCC
Confidence            689999999999999999999999999887 665544

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.77  E-value=0.61  Score=41.99  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |+|+++.|.| -+.+|+.+|+.|.+.|++|+ ++|.
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r   38 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVM-ITGR   38 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            8999999998 58899999999999999988 6665

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=80.64  E-value=0.95  Score=39.60  Aligned_cols=34  Identities=35%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      -.+++|+|+|.|..|..+|..|.+.|+.|+ |.|.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~-l~E~   80 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVH-LTDT   80 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhcccee-eEee
Confidence            467999999999999999999999999988 6654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.59  E-value=0.58  Score=40.01  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=25.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEE
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGGKVI  279 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~GakVV  279 (457)
                      ++|+|.|.|+.|..+|..|.+.|.+|.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~   27 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVR   27 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence            579999999999999999999999987

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=80.42  E-value=0.28  Score=39.92  Aligned_cols=58  Identities=21%  Similarity=0.215  Sum_probs=44.4

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750          223 GSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI  284 (457)
Q Consensus       223 Gs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  284 (457)
                      |.+|.++..|+||.|++..  .  +.-.+|++|+|+|.||-+...|.+|.+...+|.=|...
T Consensus         5 ~ipge~~~~gkGV~yca~c--D--~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~   62 (126)
T d1fl2a2           5 NVPGEDQYRTKGVTYCPHC--D--GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA   62 (126)
T ss_dssp             CCTTTTTTBTTTEESCHHH--H--GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSS
T ss_pred             CCCCHHHhcCCCEEEEEec--C--hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecc
Confidence            4556677889999887542  1  23368999999999999999999999887777755433

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.32  E-value=0.66  Score=41.95  Aligned_cols=32  Identities=16%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750          250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV  281 (457)
Q Consensus       250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  281 (457)
                      |+|+++.|.|. +.+|+.+|+.|+++|++|+.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~   44 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVT   44 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence            89999999985 679999999999999999854

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=80.14  E-value=0.78  Score=42.29  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC--CEEEEEECCC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERG--GKVIAVSDIT  285 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~~  285 (457)
                      +||+|+|.|..|..+|..|++.|  .+|+ |.+.+
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~-vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVT-LFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEE-EECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEE-EEECC
Confidence            68999999999999999888776  4887 77765

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=80.10  E-value=0.85  Score=38.07  Aligned_cols=31  Identities=29%  Similarity=0.356  Sum_probs=25.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEECC
Q 012750          253 LTFVIQGFGNVGSWAARLIHERGG--KVIAVSDI  284 (457)
Q Consensus       253 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  284 (457)
                      ++|+|+|.|+||+.+|..|..+|.  .++ ..|.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elv-L~Di   34 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYV-FIDA   34 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEE-EEec
Confidence            689999999999999998887774  555 5554